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USGS2022

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Water resources

The Williston Basin has been a leading oil and gas producing area for more than 50 years. While oil production initially peaked within the Williston Basin in the mid-1980s, production rapidly increased in the mid-2000s, largely because of improved horizontal (directional) drilling and hydraulic fracturing methods. In 2012, energy development associated with the Bakken Formation was identified as a priority requiring collaboration toward improved timeliness of issuing permits for new wells combined with reasonable measures to maintain environmental quality. Shortly thereafter, the Bakken Federal Executive Group was created to address common challenges associated with energy development. The Bakken Federal Executive Group partner agencies identified a gap in current understanding of the cumulative environmental challenges attributed to energy development throughout the area, resulting in an effort to aggregate scientific data and identify additional research and information needs related to natural resources within areas of energy development in the Williston Basin. As part of this effort, water resources in the area (including groundwater; streams and rivers; and lakes, reservoirs, and wetlands) were characterized and described in terms of physical occurrence, flow characteristics, recharge, water quality, and water use. Similarly, waters produced during energy-development activities also were characterized even though these waters are not considered usable resources within the area. Groundwater resources were characterized by the major hydrogeologic units, or aquifers, identifying the units that supply most groundwater used for domestic, stock, agricultural, and industrial purposes. The groundwater characterization included other deeper hydrogeologic units in the Williston Basin that may be a useable source of water with treatment, have utility as a reservoir for reinjection of produced waters, or be a source of minerals and energy resources. A generalized groundwater budget and flow system identifying the sources of recharge (stream infiltration, precipitation, and movement [leakage] from other aquifers) and the general groundwater flow direction is included for each of the major hydrogeologic units. Rivers and streams within the Williston Basin with 10 or more years of continuous streamflow data were identified. For a subset of these sites, streamflow characteristics, including the monthly and annual mean flow, were generated to identify seasonal and interannual changes in streamflow and thus provide information on the drivers and reliability of streamflow at the seasonal or multiyear scale. Daily streamflow and annual extreme flows (peak and low flow) also were estimated for the subset of sites. The daily streamflow and annual extreme flow values provide information on short-term or extreme events that are relevant to infrastructure design and evaluating spills, leaks, or accidental discharges of water or petroleum products. Surface-water features (lakes, ponds, and wetlands) were classified using the Cowardin system and identified on the National Wetlands Inventory maps generated by the U.S. Fish and Wildlife Service. The spatial distribution of the surface-water features was analyzed by State, county, and specifically in comparison to the Prairie Pothole Region. The proximity of the surface-water features to energy development infrastructure (specifically oil or gas well pads) was evaluated. It was determined that, although oil or gas wells are often near a surface-water feature, most surface-water features do not have wells nearby, with the exception of wells in the Prairie Pothole Region. Water-quality data were aggregated from two data sources: (1) the Water-Quality Portal, sponsored by the U.S. Geological Survey (USGS), U.S. Environmental Protection Agency (EPA), and National Water Quality Monitoring Council; and (2) a data compilation completed as part of the USGS National Water-Quality Assessment project. The Water-Quality Portal integrates publicly available water-quality data from databases maintained by the USGS, EPA, and U.S. Department of Agriculture, including water-quality data from Tribal, State, and local databases. Water-quality data for 15 commonly measured water-quality constituents were aggregated for groundwater, rivers and streams, and lakes and reservoirs. For each aggregated dataset (groundwater, rivers and streams, and lakes and reservoirs), analyses of the water-quality data included summary statistics, maps of spatial distribution of constituent values, boxplots of constituent values by timeframe or hydrogeologic unit, spatial comparisons of site locations and constituent values to petroleum well density, and comparisons of the constituent values measured to EPA drinking-water standards/guidelines. Produced water includes all fluids brought to the surface along with the targeted hydrocarbons as part of the oil and gas exploration and extraction processes. These fluids may include formation water (waters that co-exist with rock/oil/gas), hydraulic fracturing fluids, and other combinations of water and chemicals used during oil and gas well drilling, development, treatments, recompletions, and workovers. Produced water datasets were aggregated from two sources: the USGS National Produced Waters Geochemical database (ver. 2.1) and a series of projects focused specifically on sampling produced water in the Williston Basin from 2010 to 2014. The National Produced Waters Geochemical database was useful for a general understanding of produced-water chemistry. Produced waters are characterized by extreme salinity and contain elevated concentrations of other constituents (including arsenic, barium, cadmium, lead, zinc, radium-226/radium-228, and ammonium) that could negatively affect water and aquatic resources if released. Produced waters also have a generally unique chemical (isotopic) signature that may be useful in tracking water from different geologic units; for example, the oxygen/deuterium and strontium ratio values measured in brine waters from the Bakken Formation are distinct from brines collected from other geologic units in the Williston Basin. Water-use information related to energy production in the area also was aggregated and summarized. The summary of water use is not limited to oil and gas production but includes water used to produce all types of energy resources in the Williston Basin, including coal/lignite, thermoelectric power, oil and gas, hydropower, biomass and biofuels, wind, geothermal, and solar. Each State has its own methods for regulating and reporting water usage within its jurisdiction. These methods can introduce problems when examining water use from sources, such as the Missouri River or Fox Hills aquifer, that are shared across political boundaries. Without the one-to-one match for usage types and amounts used from a water source, it is difficult to develop a comprehensive water budget for the water source being evaluated. A large amount of freshwater is required to prepare a well for oil and gas well production; in some cases, 3 to 7 million gallons of water are needed per well. The EPA estimates that hydraulic fracturing in the Williston Basin uses between 70 to 140 billion gallons per year. Water also is used for myriad other purposes related to ancillary oil and gas extraction. In addition to water used for immediate energy development, the expanded human workforce migrating into the area and other support staff who have moved into the area during the development also use water. Research and information needs were identified that could be relevant in the evaluation of the effects of energy development on water resources. Information needs related to the evaluation of groundwater resources include the following: improved potentiometric-surface maps for glacial units; availability of a uniform stream network digital geographic coverage that spans the international boundary with Canada; enhanced surface-water use information with regards to the gain and loss of streamflow to shallow groundwater, which would increase understanding groundwater and surface-water interactions; and expanded geophysical assessments. Gaps in the availability of streamflow data include the lack of information on ice-jam flooding despite potential for effects to infrastructure (pipelines, roads, and facilities) and an understanding of the cumulative effects of largely undocumented stock and diversion dams. Although this study resulted in the aggregation of a large quantity of water-quality data, the availability of consistently collected, systematically processed and reported data over large parts of the Williston Basin is sparse. Few samples have been analyzed for constituents that may indicate the effect of energy development on water resources. Constituents that could be considered include boron, chloride, bromide, iodine, fluoride, manganese, lithium, radium, strontium isotopes, volatile organic compounds, and isotopes of inorganic ions (such as hydrogen and carbon). Collaboration between Tribal, Federal, State, and local entities to identify a common study design, common monitoring constituents, and consistent sampling locations would generate datasets with broad utility and would likely result in overall cost savings for monitoring over time. Similarly, there is a need for standardized sample collection, processing, laboratory analytical methods, and the collection of ancillary data for produced waters sampling. Additional characterization of the range of chemical, microbial, and isotopic compositions and quantities of “end-member” produced waters, and the collection of time-series datasets to document the changes in produced waters during and after well development also were needs identified during this study. Water-use estimates would be improved through the implementation of comprehensive studies of water use from groundwater and surface-water sources using consistent methodologies across the Williston Basin. The submission of chemical and water data related to hydraulic fracturing collected by the oil and gas industry would add to the quantity of available data. Consistent implementation of regulations and monitoring controls across political boundaries (State, county, and international) would further improve the consistency of data available for the estimates of water use.

Montana, North Dakota, South Dakota↗
USGS2007

Pre-Restoration Habitat Use by Chinook Salmon in the Nisqually Estuary Using Otolith Analysis

INTRODUCTION The Nisqually Fall Chinook population is one of 27 stocks in the Puget Sound evolutionarily significant unit listed as threatened under the federal Endangered Species Act. The preservation of the Nisqually delta ecosystem coupled with extensive restoration of approximately 1,000 acres of diked estuarine habitat is identified as the highest priority action for the recovery of naturally spawning Nisqually River Fall Chinook salmon (Oncorhynchus tshawytscha) in the Nisqually Chinook Recovery Plan. In order to evaluate the response of Chinook salmon to restoration, a pre-restoration baseline of life history diversity and estuary utilization must be established. Otolith analysis has been proposed as a means to measure Chinook salmon life history diversity, growth, and residence in the Nisqually estuary. Over time, the information from the otolith analyses will be used to: (1) determine if estuary restoration actions cause changes to the population structure (i.e. frequency of the different life history trajectories) for Nisqually River Chinook, (2) compare pre and post restoration residence times and growth rates, and (3) suggest whether estuary restoration yields substantial benefits for Chinook salmon. Otoliths are calcium carbonate structures in the inner ear that grow in proportion to the overall growth of the fish. Daily growth increments can be measured so date and fish size at various habitat transitions can be back-calculated. Careful analysis of otolith microstructure can be used to determine the number of days that a fish resided in the estuary as a juvenile (increment counts), size at entrance to the estuary, size at egress, and the amount that the fish grew while in the estuary. Juvenile Chinook salmon can exhibit a variety of life history trajectories ? some enter the sea (or Puget Sound) as fry, some rear in the estuary before entering the sea, and some rear in the river and then move rapidly through the estuary into the sea as smolts. The purpose of this study is to evaluate and use analysis of otolith microstructure as a tool for characterizing the importance of the estuary to Chinook salmon in the Nisqually River before and after restoration efforts at the Nisqually National Wildlife Refuge (NNWR). This tool is used to quantify changes in habitat use and help assess restoration benefits to the federally threatened Nisqually River Chinook salmon population. Analysis of otolith microstructure typically is superior to the alternative of traditional mark-recapture methods. The latter are extremely expensive or inadequate in estuary habitats, typically are biased and substantially underestimate use, and do not directly reveal the importance or contribution to adult recruitment (i.e., they do not account for differential survival afterward in Puget Sound or the ocean). Analysis of otolith microstructure for these purposes, while new, is proving highly successful in a similar study that USGS and partners are conducting in the Skagit River estuary system located in northern Puget Sound. This work has been based on research by Neilson et al. (1985). We expect to use the Skagit River data as a reference for the before/after restoration comparison in the Nisqually River.

Open-File Report↗
USGS2017

2010-2015 Juvenile fish ecology in the Nisqually River Delta and Nisqually Reach Aquatic Reserve

The return of tidal inundation to over 750 acres of the U. S. Fish and Wildlife Service Billy Frank Jr. Nisqually National Wildlife Refuge (NNWR) in fall of 2009 was the crowning moment in the effort to protect and restore the Nisqually Delta. The Nisqually NWR project complemented three earlier restoration projects completed by the Nisqually Indian Tribe (Tribe) on tribal property to restore over 900 acres of the estuary, representing the largest estuary restoration project in the Pacific Northwest and one of the most significant advances to date towards the recovery of Puget Sound (USFWS 2005). In 2011 the Washington Department of Natural Resources (WADNR established the over 14000 acre Nisqually Reach Aquatic Reserve (Reserve), complementing the protection and restoration successes in the Nisqually Delta. The Reserve includes all state-owned aquatic lands around Anderson, Ketron and Eagle islands and part of McNeil Island (Figure 1, WDNR 2011). The Reserve also includes a diverse assemblage of nearshore and offshore habitats important to resident and migratory fish including federal endangered species act listed fish like Chinook salmon (Oncorynchus tshawytscha) and steelhead (O. mykiss). Studies in the Nisqually Estuary (Ellings and Hodgson 2007, David et al. 2014, Ellings et al. 2016) and South Puget Sound (Duffy 2003) have summarized fish use of the area. However, the fish ecology of the reserve had not been systematically surveyed. The Tribe, U.S. Geological Survey (USGS), NNWR, Nisqually River Foundation (NRF), and others are currently conducting a multi-year, interdisciplinary, hypothesis-based research and monitoring study investigating the impact of delta restoration on estuarine processes, habitat structures, and functions. Our interdisciplinary monitoring framework enables us to link key estuarine processes with habitat development and biological response at multiple scales across the restored footprint, reference marshes, and throughout the Nisqually Reach. Key research components include hydrology and sediment regime, channel and marsh topography and development, vegetation colonization, and invertebrate, bird, and fish abundance, habitat use, and foraging ecology. After the Reserve was established, the WDNR and the research partnership led by the Tribe expanded the existing delta fish ecology assessment to include sampling stations throughout the Reserve. The results of the Reserve fish ecology assessment provide a unique regional analysis of fish ecology from the Nisqually River to McNeil Island.

Salmon Recovery Program Technical Report↗
USGS1984

Effects of weather on breeding ducks in North Dakota

The present report quantifies relations between weather and several aspects of the breeding biology of four duck species: mallard (Anas platyrhynchos), gadwall (A. strepera), blue-winged teal (A. discors), and redhead (Aythya americana). Data were obtained from two locations in North Dakota,--the J. Clark Salyer National Wildlife Refuge, intermittently during 1936-68, and the Northern Prairie Wildlife Research Center's Woodworth Station during 1965-77. Arrival dates varied with mean temperature before and during the usual arrival period; early-arriving species were affected by early-season temperatures, and later-arriving species by temperatures later in spring. After temperature effects were accounted for, first arrivals were seen at the more southern Woodworth Station a few days earlier than at Salyer. High spring temperatures also seemed to induce early nesting. The mallard, which nested earliest, was most affected by temperatures during April whereas the other species were most affected by temperatures during late April and May. Peak hatching dates were also earlier in years with higher temperatures in May. Earlier peaks were associated with early first nests, so it was difficult to separate the effects of weather and date of initial nesting. Peaks at Woodworth occurred earlier than at Salyer, after temperature differences were taken into account. The period of most active nesting was longest for the early-nesting mallard, shortest for the late-nesting gadwall, and intermediate for the blue-winged teal and redhead. For two species, precipitation during the breeding season may have prolonged nesting activities. We also found that late nesting seasons tend to be compressed. Productivity at Salyer, measured by the brood to pair ratio, was generally greater in years with higher temperatures during 23 April-3 June. Effects were more pronounced among early-nesting species. Average brood size for Classes I and II tended to decline during the 1947-62 period at Salyer; pair populations generally increased. Consequently, it was nearly impossible to distinguish the effects of pair density on brood size from those of yearly trend. In addition, Class II broods were smaller in years when temperatures were higher during late May and June.

Fish and Wildlife Technical Report↗
USGS2005

An introduction to mid-Atlantic seasonal pools

Seasonal pools, also known as vernal ponds, provide important ecological services to the mid-Atlantic region. This publication serves as an introduction to seasonal pool ecology and management; it also provides tools for exploring seasonal pools, including a full-color field guide to wildlife. Seasonal pools are defined as having four distinctive features: surface water isolation, periodic drying, small size and shallow depth, and support of a characteristic biological community. Seasonal pools experience regular drying that excludes populations of predatory fish. Thus, pools in the mid-Atlantic region provide critical breeding habitat for amphibian and invertebrate species (e.g., spotted salamander (Ambystoma maculatum), wood frog (Rana sylvatica), and fairy shrimp (Order Anostraca)) that would be at increased risk of predation in more permanent waters. The distinctive features of seasonal pools also make them vulnerable to human disturbance. In the mid-Atlantic region, land-use changes pose the greatest challenges to seasonal pool conservation. Seasonal pools are threatened by direct loss (e.g., filling or draining of the pool) as well as by destruction and fragmentation of adjoining terrestrial habitat. Many of the species that depend on seasonal pools for breeding spend the majority of their lives in the surrounding lands that extend a radius of 1000 feet or more from the pools; these vital habitats are being transected by roads and converted to other land uses. Other threats to seasonal pools include biological introductions and removals, mosquito control practices, amphibian diseases, atmospheric deposition, and climate change. The authors recommend a three-pronged strategy for seasonal pool conservation and management in the mid-Atlantic region: education and research, inventory and monitoring of seasonal pools, and landscape-level planning and management.

Report↗
USGS2018

Climate Assessments and Scenario Planning (CLASP)

The NE CASC boasts an interdisciplinary array of scientists, from ecologists to biologists, hydrologists to climatologists, each contributing new, original academic research to advance our understanding of the impacts of climate change on wildlife and other natural resources in the Northeast. Needed was an outreach specialist who would interface directly with the management agencies who benefited from this research to aid the integration of this research into their management planning as part of adapting to climate change. A climatologist was preferred to address queries about climate modeling, climate change uncertainties, and other areas of climate science outside the expertise of NE CASC ecologists, biologists, and hydrologists. This person’s activities would include responding to inquiries, presenting climate science concepts at management workshops, gathering managers’ climate science needs, contributing to the climate portion of synthesis reports and other resources for managers, and collaborating with ecologists on interdisciplinary studies of climate change by providing climate data and guidance on interpretation. The objective was to relay and interpret the scientific findings most relevant to managers’ resources of concern and management activities around those resources to guide adjustments to their activities toward better protecting their resources of concern. As an outcome, managers often relied on synthesized climate science to be able to consider how climate trends affect their work, especially those thinking about climate change for the first time in the context of their work. This lays the groundwork for more detailed management-driven science delivery that can aid eventual implementation. Management groups reached by this project include land managers with the National Park Service, state fish and game departments and DNRs, and tribal environmental coordinators.

Report↗
USGS1999

The ecological condition of estuaries in the Gulf of Mexico

The Gulf of Mexico is a vast natural resource encompassing the coastal areas of western Florida, Alabama, Mississippi, Louisiana, and Texas, as well as a portion of Mexico. Many estuaries flow into the Gulf of Mexico and serve as nursery grounds for fish, habitat for a wide variety of wildlife, shipping routes, and a source of recreation. Estuarine-dependent species constitute more than 95 percent of the commercial fishery harvests from the Gulf of Mexico, and many important recreational fishery species depend on estuaries during some part of their life cycle. Gulf estuaries are diverse and productive ecosystems that provide a variety of valuable resources, including fish and shellfish, recreation, transportation, and water supply. Assessing the overall condition of Gulf of Mexico estuaries required incorporating data from other federal, state, and local monitoring programs to augment the information on ecological indicators collected by the U.S. Environmental Protection Agency’s (USEPA) Environmental Monitoring and Assessment Program (EMAP). The resulting document would provide a synthesis of the available knowledge about the condition of Gulf of Mexico estuaries. This document is intended for use by scientists and other citizens concerned with the ecological condition of estuaries, as well as by managers and lawmakers interested in the sustained use of estuaries for commercial and recreational purposes. It also addresses public concerns about the aesthetic quality of coastal areas vital to tourism and recreation. By producing this report on the ecological condition of estuaries in the Gulf of Mexico, we have taken one step in assessing the health of this environmental resource. We have produced an environmental “report card” to be used as a guide in the evaluation of management decisions and research directions. This report is organized in three parts: (1) an introduction that gives background information on the Gulf of Mexico, estuarine ecology, and the factors that impact estuaries in the gulf, (2) the main section on priority ecological indicators used to measure the condition of estuaries in the gulf and (3) an ecological report card that summarizes the data on ecological indicators and provides a rating of the condition of estuaries in each gulf state and for gulf estuaries overall. Many of the ratings were based on the percent area of estuaries in each state exhibiting degraded or adverse levels of an indicator. Eutrophication, a condition of high nutrients often resulting in low oxygen levels and other adverse effects, is an important water quality concern for estuaries along the gulf coast. The National Oceanic and Atmospheric Administration (NOAA) has compared the Gulf of Mexico to other coastal regions like the middle Atlantic and has ranked the Gulf of Mexico as having the highest number of point sources of nutrients and the highest percentage of land use devoted to agriculture. We evaluated monitoring data for nitrogen, chlorophyll, and dissolved oxygen as indicators of eutrophication. Although most of the estuaries exhibited high nitrogen or chlorophyll or low dissolved oxygen concentrations at least once during a survey, many times these conditions were observed in small rivers or bayous rather than in the entire estuary. Often, the percent area affected was low. The gulf estuaries had moderate conditions overall for nutrients and dissolved oxygen. Definite nutrient problems were observed in >25% of the estuarine area in Louisiana and Texas and definite dissolved oxygen problems were observed in Alabama. Contaminants in estuarine sediments provide evidence of the accumulation of chemicals from anthropogenic sources. We compared the concentrations of sediment contaminants to established guideline values to determine the proportion of estuarine area that could have potential adverse effects on living organisms. Although detectable levels of contaminants were measured in almost every estuary in the Gulf of Mexico, <25% of the estuarine area in all states had contaminant concentrations that exceeded these guidelines. Wetlands are integral parts of estuarine systems. Declining acreage means habitat loss that may be the result of commercial and residential development, hydrologic alterations, or dredge and fill operations. The Gulf of Mexico region contains more than 50% of the coastal wetland acreage in the U.S. and yet it also has the highest rate of coastal wetland loss. Nine of the top ten estuarine drainage areas ranked by total wetland area are in the Gulf of Mexico region. The most current estimates of total wetland loss over the past 200 years range from 41% to 54% for the gulf states. Although coastal wetlands continue to be altered or destroyed, some estimates indicate that the rate of loss has slowed. All gulf states were rated as having severe problems with wetland loss. The condition of benthic (bottom-dwelling) invertebrates, fish and shellfish, birds, and threatened and endangered species was used to evaluate the health of estuarine fauna. Degraded benthic communities inhabited <25% of the estuarine area in all gulf states except for Texas. Commercial fish and shellfish landings may be used as an indicator of population stability while fish biomarkers are used to measure the health of individuals in the population. Commercial landings of the top four fisheries (shrimp, menhaden, blue crab, and oyster) are stable in the gulf states while fish biomarkers indicate fair to poor fish health in Alabama and Texas and good fish health elsewhere. Coastal and marine bird populations appear to be in good condition throughout the gulf. Four threatened or endangered species inhabit coastal areas in the Gulf of Mexico: brown pelican, Gulf sturgeon, manatee, and Kemp’s ridley sea turtle. In general, populations of these species are in good to fair condition in the gulf states. Public health indicators include shellfish bed closures and chemicals found in edible fish tissue. Harvest of shellfish (primarily oyster in the Gulf of Mexico) is restricted or prohibited when concentrations of bacteria or other pathogens reach levels that could impair human health. The gulf states contain the most acreage of shellfish-growing waters in the U.S. but also have the most acreage restricted for harvest. All gulf states except Mississippi have >25% of their shellfish-growing waters restricted for harvest, mostly due to pollution from wastewater treatment plants or other upstream sources. Advisories may be issued that limit consumption when the concentrations of chemicals in fish tissue exceed levels known to be harmful to humans. Although seafood consumption advisories have been issued in all gulf states, the percent of the fish population with high concentrations of contaminants is relatively low in the gulf overall.

Alabama, Florida, Louisiana, Mississippi, Texas↗
USGS2001

The role of native birds and other wildlife on the emergence of zoonotic diseases

Wildlife can be an important source of transmission of infectious disease to humans. One potential transmission route involves hunting and fishing, both common activities in the United States and worldwide. For example, during 1996, approximately 11 million Americans, about 40 percent of the total population 16 years of age and older, took part in some recreational activity relating to wildlife and fish. Another potential route of infection focuses on urban and suburban environments. These locations are of special concern because of their increasing role as wildlife habitat, the greater interface between humans and wildlife that takes place within those environments, the paucity of knowledge about disease in those wildlife populations, and the general lack of orderly management for wildlife within those environments. In the wild, several trends are contributing to the growing importance of zoonotic diseases. First, the spectrum of infectious diseases affecting wildlife today is greater than at any time during the previous century. Second, the occurrence of infectious diseases has changed, from sporadic, self-limiting outbreaks that generally resulted in minor losses to frequently occurring events that generally result in major losses of wildlife. Third, disease emergence has occurred on a worldwide scale in a broad spectrum of wildlife species and habitats. Given the scope of the problem, current disease surveillance efforts are inadequate. Few state wildlife agencies allocate personnel and resources to address wildlife disease, despite their statutory responsibility for managing nonmigratory wildlife. Some state agencies provide minimal support for regional programs based at universities. At the federal level, the primary surveillance effort is conducted by the National Wildlife Health Center, operated by the U.S. Geological Survey. Outside of government, some veterinary schools, agriculture diagnostic laboratories, and other programs provide additional information on animal diseases, primarily by examining carcasses of dead wildlife submitted for analysis, and individual university-based researchers carry out a variety of studies. Typically, information about the occurrence of disease in free-ranging wildlife is derived from surveys and mortality events in areas where wildlife observations by agencies and the public are frequent enough to detect their occurrence before carcasses are removed by scavengers and predatory animals. The result is that disease occurrence is grossly underreported, heavily biased toward mortality events, and biased toward species of special concern and interest, such as game and endangered species. Therefore, the available information should be viewed as the “proverbial tip of the iceberg” relative to disease activity within wildlife populations.

National Academy of Science.↗
USGS2021

Conservation of northwestern and southwestern pond turtles: Threats, population size estimates, and population viability analysis

Accurate status assessments of long-lived, widely distributed taxa depend on the availability of long-term monitoring data from multiple populations. However, monitoring populations across large temporal and spatial scales is often beyond the scope of any one researcher or research group. Consequently, wildlife managers may be tasked with utilizing limited information from different sources to detect range-wide evidence of population declines and their causes. When assessments need to be made under such constraints, the research and management communities must determine how to extrapolate from variable population data to species-level inferences. Here, using three different approaches, we integrate and analyze data from the peer-reviewed literature and government agency reports to inform conservation for northwestern pond turtles (NPT) Actinemys marmorata and southwestern pond turtles (SPT) Actinemys pallida . Both NPT and SPT are long-lived freshwater turtles distributed along the west coast of the United States and Mexico. Conservation concerns exist for both species; however, SPT may face more severe threats and are thought to exist at lower densities throughout their range than NPT. For each species, we ranked the impacts of 13 potential threats, estimated population sizes, and modeled population viability with and without long-term droughts. Our results suggest that predation of hatchlings by invasive predators, such as American bullfrogs Lithobates catesbeianus and Largemouth Bass Micropterus salmoides, is a high-ranking threat for NPT and SPT. Southwestern pond turtles may also face more severe impacts associated with natural disasters (droughts, wildfires, and floods) than do NPT. Population size estimates from trapping surveys indicate that SPT have smaller population sizes on average than do NPT ( P = 0.0003), suggesting they may be at greater risk of local extirpation. Population viability analysis models revealed that long-term droughts are a key environmental parameter; as the frequency of severe droughts increases with climate change, the likelihood of population recovery decreases, especially when census sizes are low. Given current population trends and vulnerability to natural disasters throughout their range, we suggest that conservation and recovery actions first focus on SPT to prevent further population declines.

Journal of Fish and Wildlife Management↗
USGS2016

Nuclear and mitochondrial DNA analyses of golden eagles (Aquila chrysaetos canadensis) from three areas in western North America; initial results and conservation implications

Understanding the genetics of a population is a critical component of developing conservation strategies. We used archived tissue samples from golden eagles ( Aquila chrysaetos canadensis ) in three geographic regions of western North America to conduct a preliminary study of the genetics of the North American subspecies, and to provide data for United States Fish and Wildlife Service (USFWS) decision-making for golden eagle management. We used a combination of mitochondrial DNA (mtDNA) D-loop sequences and 16 nuclear DNA (nDNA) microsatellite loci to investigate the extent of gene flow among our sampling areas in Idaho, California and Alaska and to determine if we could distinguish birds from the different geographic regions based on their genetic profiles. Our results indicate high genetic diversity, low genetic structure and high connectivity. Nuclear DNA Fst values between Idaho and California were low but significantly different from zero (0.026). Bayesian clustering methods indicated a single population, and we were unable to distinguish summer breeding residents from different regions. Results of the mtDNA AMOVA showed that most of the haplotype variation (97%) was within the geographic populations while 3% variation was partitioned among them. One haplotype was common to all three areas. One region-specific haplotype was detected in California and one in Idaho, but additional sampling is required to determine if these haplotypes are unique to those geographic areas or a sampling artifact. We discuss potential sources of the high gene flow for this species including natal and breeding dispersal, floaters, and changes in migratory behavior as a result of environmental factors such as climate change and habitat alteration. Our preliminary findings can help inform the USFWS in development of golden eagle management strategies and provide a basis for additional research into the complex dynamics of the North American subspecies.

Alaska, California, Idaho, Oregon↗
USGS2014

Assessment of sediments in the riverine impoundments of national wildlife refuges in the Souris River Basin, North Dakota

Accelerated sedimentation of reservoirs and riverine impoundments is a major concern throughout the United States. Sediments not only fill impoundments and reduce their effective life span, but they can reduce water quality by increasing turbidity and introducing harmful chemical constituents such as heavy metals, toxic elements, and nutrients. U.S. Fish and Wildlife Service national wildlife refuges in the north-central part of the United States have documented high amounts of sediment accretion in some wetlands that could negatively affect important aquatic habitats for migratory birds and other wetland-dependent wildlife. Therefore, information pertaining to sediment accumulation in refuge impoundments potentially is important to guide conservation planning, including future management actions of individual impoundments. Lands comprising Des Lacs, Upper Souris, and J. Clark Salyer National Wildlife Refuges, collectively known as the Souris River Basin refuges, encompass reaches of the Des Lacs and Souris Rivers of northwestern North Dakota. The riverine impoundments of the Souris River Basin refuges are vulnerable to sedimentation because of the construction of in-stream dams that interrupt and slow river flows and because of post-European settlement land-use changes that have increased the potential for soil erosion and transport to rivers. Information regarding sediments does not exist for these refuges, and U.S. Fish and Wildlife Service personnel have expressed interest in assessing refuge impoundments to support refuge management decisions. Sediment cores and surface sediment samples were collected from impoundments within Des Lacs, Upper Souris, and J. Clark Salyer National Wildlife Refuges during 2004–05. Cores were used to estimate sediment accretion rates using radioisotope (cesium-137 [ 137 Cs], lead-210 [ 210 Pb]) dating techniques. Sediment cores and surface samples were analyzed for a suite of elements and agrichemicals, respectively. Examination of core characteristics along the depth profile suggests that there has been regular sediment mixing and removal, as well as non-uniform sediment deposition with time. Estimated mean accretion rates based on the three methods of determination (two time markers for 137 Cs, 210 Pb) ranged from 0.22–0.35 centimeters per year, and approximately 70 percent of cores had less 137 Cs than expected. Concentrations of sediment-associated elements generally were within reported reference ranges, and all agrichemicals analyzed were below detection limits. Results suggest that there does not appear to be widespread sediment accumulation in impoundments of the Souris River Basin refuges. In addition, there were no identifiable patterns among sedimentation rates from the upstream (Des Lacs, Upper Souris) to the downstream (J. Clark Salyer) refuges. There were, however, apparent upstream to downstream patterns of increased concentrations of some elements (for example, aluminum, boron, and vanadium) that may warrant further exploration. Future related monitoring and research efforts should focus on areas with high potential for sediment accumulation, such as upstream areas adjacent to dams, to identify potential sediment problems before they become too severe. Further, assessments of suspended sediments transported in the Des Lacs and Souris Rivers would augment interpretation of sedimentation data by identifying potential sediment sources and areas with the greatest potential for accumulation.

North Dakota↗
USGS2020

Tissue distribution and immunomodulation in channel catfish (Ictalurus punctatus) following dietary exposure to polychlorinated biphenyl Aroclors and food deprivation

Although most countries banned manufacturing of polychlorinated biphenyls (PCBs) over 40 years ago, PCBs remain a global concern for wildlife and human health due to high bioaccumulation and biopersistance. PCB uptake mechanisms have been well studied in many taxa; however, less is known about depuration rates and how post-exposure diet can influence PCB concentrations and immune response in fish and wildlife populations. In a controlled laboratory environment, we investigated the influence of subchronic dietary exposure to two PCB Aroclors and food deprivation on tissue-specific concentrations of total PCBs and PCB homologs and innate immune function in channel catfish ( Ictalurus punctatus ). Overall, we found that the concentration of total PCBs and PCB homologs measured in whole body, fillet, and liver tissues declined more slowly in food-deprived fish, with slowest depuration observed in the liver. Additionally, fish that were exposed to PCBs had lower plasma cortisol concentrations, reduced phagocytic oxidative burst activity, and lower cytotoxic activity, suggesting that PCBs can influence stress and immune responses. However, for most measures of immune function, the effects of food deprivation had a larger effect on immune response than did PCB exposure. Taken together, these results suggest that short-term dietary exposure to PCBs can increase toxicity of consumable fish tissues for several weeks, and that PCB mixtures modulate immune and stress responses via multiple pathways. These results may inform development of human consumption advisories and can help predict and understand the influence of PCBs on fish health.

International Journal of Environmental Research an↗
USGS1994

Overview of the National Water-Quality Assessment Program

The Nation's water resources are the basis for life and our economic vitality. These resources support a complex web of human activities and fishery and wildlife needs that depend upon clean water. Demands for good-quality water for drinking, recreation, farming, and industry are rising, and as a result, the American public is concerned about the condition and sustainability of our water resources. The American public is asking: Is it safe to swim in and drink water from our rivers or lakes? Can we eat the fish that come from them? Is our ground water polluted? Is water quality degrading with time, and if so, why? Has all the money we've spent to clean up our waters, done any good? The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program was designed to provide information that will help answer these questions. NAWQA is designed to assess historical, current, and future water-quality conditions in representative river basins and aquifers nationwide. One of the primary objectives of the program is to describe relations between natural factors, human activities, and water-quality conditions and to define those factors that most affect water quality in different parts of the Nation. The linkage of water quality to environmental processes is of fundamental importance to water-resource managers, planners, and policy makers. It provides a strong and unbiased basis for better decisionmaking by those responsible for making decisions that affect our water resources, including the United States Congress, Federal, State, and local agencies, environmental groups, and industry. Information from the NAWQA Program also will be useful for guiding research, monitoring, and regulatory activities in cost effective ways.

Open-File Report↗
USGS2023

Improving the Midwest Climate Change Vulnerability Assessment Tool to support regional climate adaptation

An online climate vulnerability assessment dashboard was developed in 2021 through collaboration between U.S. Geological Survey (USGS) and U.S. Fish and Wildlife Service (FWS) to support regional climate adaptation efforts. The dashboard included 15 climate change impact metrics (five each from three categories: hydrology, precipitation, and temperature) and five metrics representing each watershed's capacity to adapt to changing conditions. Users could then adjust relative weights of each metric to generate vulnerability scores. The metrics included in the dashboard were identified by FWS for their programs but have broad relevance, making the dashboard useful to a wide range of stakeholders. For this project we had two primary goals: (1) update the online dashboard to better communicate the variability that is inherent in climate change projections, and (2) develop a use case example using the dashboard to collaboratively assess vulnerability of a resource of concern at a workshop with resource managers. For objective 2, we selected prairie-obligate butterflies (POBs), which are dependent on, and often restricted to, native prairie habitat. The extent of native prairie has been greatly reduced over the last two centuries resulting in a patchwork of isolated and often small tracts of land. For many POBs, declines and extirpations have been observed in recent decades. Although the causes are not always known, hypotheses include overuse of management tools (e.g., too frequent burning or overgrazing), lack of dispersal opportunities, or extreme weather events. With more extreme weather events anticipated in the future along with other changes in climate, it is important to better understand the vulnerability of POBs to design effective adaptation strategies. While research on extreme weather, climate change, and adaptation is ongoing for some prairie-obligate species, this workshop sought to take a broad perspective using POBs as the focal taxonomic group across eight U.S. States in the Midwest During the workshop we discussed weather and climate-related influences on butterfly communities and assessed climate change vulnerability using the Watershed-based Midwest Climate Change Vulnerability Assessment Tool (https://www.usgs.gov/apps/CC_Vulnerability/). We produced maps that quantify the regional vulnerability of POBs across 360 watersheds for two future emissions scenarios. The information developed during the workshop could help in regional planning for climate change adaptation and to identify avenues for research and collaboration for POBs in the Midwest.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss↗
USGS2023

Contaminant risks in consuming fish from the Area of Concern in the Upper Niagara River

The lack of contemporary data on contaminants in resident fish prevents an analysis of temporal trends in contaminant concentrations and the present-day status of the “Restrictions on Fish and Wildlife Consumption” Beneficial Use Impairment (BUI) in the Niagara River Area of Concern (AOC). During 2018, concentrations of 260 contaminants in four groups of fish species from five areas in or near the upper Niagara River AOC were analyzed to determine the potential risks from fish consumption, responses to remediation in an adjacent AOC, and whether additional remedial actions were warranted in this AOC. The concentrations of most contaminants were generally undetectable or did not exceed established Federal, State, or European Union fish-consumption limits. Several contaminants without State or Federal limits exceeded European Union fish-consumption guidelines in some species and areas. High PCB residues in many bullhead from Scajaquada Creek, some bass from Hoyt Lake, and most common carp from all areas surpassed certain New York and Federal fish-consumption limits and indicate PCBs continue to restrict fish consumption at most study areas. High concentrations of several contaminants in resident fish, especially dioxins and furans in carp, from Cayuga Creek indicate that additional scrutiny of consumption advisories is warranted in this area. Because this study provides a snapshot in time of fish-contaminant data from five areas, additional data from other areas and times, and more detailed information on present-day pollutant sources may be needed before determining the status of the fish-consumption BUI in this AOC.

New York↗
USGS2018

Aquatic vegetation responses to island construction (habitat restoration) in a large floodplain river

The Upper Mississippi River is maintained in its current navigable state through impoundments, dredging, and other engineering projects. These stressors, along with anthropogenic impacts and natural system processes, led to declines in aquatic vegetation and the loss of fish and wildlife habitat, with a major downturn the late 1980s and early 1990s. Large‐scale restoration projects, such as the one evaluated here, are primarily designed to rehabilitate and enhance fish and wildlife habitat. We determined whether an individual restoration project, construction of an island complex, fulfilled a programmatic goal of re‐establishing diverse and abundant native aquatic vegetation. Eighteen years of aquatic vegetation monitoring data from impact and reference areas were compared to evaluate the anticipated direct effects (within 400 m of the constructed islands) and indirect effects (>400 m downstream of constructed islands) of restoration. Impact areas were also compared with an unrestored negative reference area ~200 km downstream of the project and with a positive reference area in adjacent, relatively natural backwaters. Only indirect effects of restoration were evident. Prevalence and species richness of aquatic vegetation in both of the impact areas and in the negative reference area increased prior to restoration, suggesting large‐scale improvement independent of the project examined here. Indirect effects were demonstrated as further increases in both prevalence and species richness coinciding with restoration in the area >400 m downstream of the restoration. We conclude that increased abundance and diversity of aquatic vegetation was partially achieved, with observed improvements potentially linked to reduced wind fetch.

River Research and Applications↗
USGS2012

An exploratory investigation of the landscape-lake interface: Land cover controls over consumer N and C isotopic composition in Lake Michigan rivermouths

Rivermouth ecosystems are areas where tributary waters mix with lentic near-shore waters and provide habitat for many Laurentian Great Lakes fish and wildlife species. Rivermouths are the interface between terrestrial activities that influence rivers and the ecologically important nearshore. Stable isotopes of nitrogen (N) and carbon (C) in consumers were measured from a range of rivermouths systems to address two questions: 1) What is the effect of rivermouth ecosystems and land cover on the isotopic composition of N available to rivermouth consumers? 2) Are rivermouth consumers composed of lake-like or river-like C? For question 1, data suggest that strong relationships between watershed agriculture and consumer N are weakened or eliminated at the rivermouth, in favor of stronger relationships between consumer N and depositional areas that may favor denitrification. For question 2, despite apparently large riverine inputs, consumers only occasionally appear river-like. More often consumers seem to incorporate large amounts of C from either the nearshore or primary production within the rivermouth itself. Rivermouths appear to be active C and N processing environments, thus necessitating their explicit incorporation into models estimating nearshore loading and possibly contributing to their importance to Great Lakes biota.

Lake Michigan↗
USGS2003

Potential for increased mercury accumulation in the estuary food web

Present concentrations of mercury in large portions of San Francisco Bay (Bay), the Sacramento-San Joaquin Delta (Delta), and the Sacramento and San Joaquin rivers are high enough to warrant concern for the health of humans and wildlife. Large scale tidal wetland restoration is currently under consideration as a means of increasing populations of fish species of concern. Tidal wetland restoration activities may lead to increased concentrations of mercury in the estuarine food web and exacerbate the existing mercury problem. This paper evaluates our present ability to predict the local and regional effects of restoration actions on mercury accumulation in aquatic food webs. A sport fish consumption advisory is in place for the Bay, and an advisory is under consideration for the Delta and lower Sacramento and San Joaquin rivers. Mercury concentrations in eggs of several water bird species from the Bay have exceeded the lowest observed effect level. A variety of mercury sources, largely related to historic mercury and gold mining, is present in the watershed and has created a spatially heterogeneous distribution of mercury in the Bay-Delta Estuary. Mercury exists in the environment in a variety of forms and has a complex biogeochemical cycle. The most hazardous form, methylmercury, is produced at a relatively high rate in wetlands and newly flooded aquatic habitats. It is likely that distinct spatial variation on multiple spatial scales exists in net methylmercury production in Bay-Delta tidal wetlands, including variation within each tidal wetland, among tidal wetlands in the same region, and among tidal wetlands in different regions. Understanding this spatial variation and its underlying causes will allow environmental managers to minimize the negative effects of mercury bioaccumulation as a result of restoration activities. Actions needed to reduce the uncertainty associated with this issue include a long term, multifaceted research effort, long term monitoring on local and regional scales, and careful evaluation of individual restoration projects with regard to potential increase of food web mercury.

California↗