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Program design for San Francisco Bay Region environment and resources planning study

The "Program Design" for the San Francisco Bay Region Environment and Resources Planning Study represents a refinement, elaboration, and extension of the plans which formed the basis for the cooperative program between the Department of the Interior, Geological Survey, and the Department of Housing and Urban Development, Office of Research and Technology, formally recognized in the Letter of Agreement of October 24, 1969, and begun January 1, 1970. From the first, the study was recognized as an experimental pilot study, and new developments in the state-of-the-art in the earth sciences and in urban and regional planning were recognized as necessary. Indeed, the development of a suitable structure for such a program was considered one of the important parts of the experiment. Consequently, one of the stated goals of the Letter of Agreement was to produce a Program Design.

California

Hydrogeochemical processes governing the origin, transport and fate of major and trace elements from mine wastes and mineralized rock to surface waters

The formation of acid mine drainage from metals extraction or natural acid rock drainage and its mixing with surface waters is a complex process that depends on petrology and mineralogy, structural geology, geomorphology, surface-water hydrology, hydrogeology, climatology, microbiology, chemistry, and mining and mineral processing history. The concentrations of metals, metalloids, acidity, alkalinity, Cl - , F - and SO 4 2- found in receiving streams, rivers, and lakes are affected by all of these factors and their interactions. Remediation of mine sites is an engineering concern but to design a remediation plan without understanding the hydrogeochemical processes of contaminant mobilization can lead to ineffective and excessively costly remediation. Furthermore, remediation needs a goal commensurate with natural background conditions rather than water-quality standards that might bear little relation to conditions of a highly mineralized terrain. This paper reviews hydrogeochemical generalizations, primarily from US Geological Survey research, that enhance our understanding of the origin, transport, and fate of contaminants released from mined and mineralized areas. Mobility of potential or actual contaminants from mining and mineral processing activities depends on (1) occurrence : is the mineral source of the contaminant actually present? (2) abundance : is the mineral present in sufficient quantity to make a difference? (3) reactivity : what are the energetics, rates, and mechanisms of sorption and mineral dissolution and precipitation relative to the flow rate of the water? and (4) hydrology : what are the main flow paths for contaminated water? Estimates of relative proportions of minerals dissolved and precipitated can be made with mass-balance calculations if minerals and water compositions along a flow path are known. Combined with discharge, these mass-balance estimates quantify the actual weathering rate of pyrite mineralization in the environment and compare reasonably well with laboratory rates of pyrite oxidation except when large quantities of soluble salts and evaporated mine waters have accumulated underground. Quantitative mineralogy with trace-element compositions can substantially improve the identification of source minerals for specific trace elements through mass balances. Post-dissolution sorption and precipitation (attenuation) reactions depend on the chemical behavior of each element, solution composition and pH, aqueous speciation, temperature, and contact-time with mineral surfaces. For example, little metal attenuation occurs in waters of low pH (<3.5) and metals tend to maintain element ratios indicative of the main mineral or group of minerals from which they dissolved, except Fe, SiO 2 , and redox-sensitive oxyanions (As, Sb, Se, Mo, Cr, V). Once dissolved, metal and metalloid concentrations are strongly affected by redox conditions and pH. Iron is the most reactive because it is rapidly oxidized by bacteria and archaea and Fe(III) hydrolyzes and precipitates at low pH (1&ndash;3) which is related directly to its first hydrolysis constant, pK 1 = 2.2. Several insoluble sulfate minerals precipitate at low pH including anglesite, barite, jarosite, alunite and basaluminite. Aluminum hydrolyzes near pH 5 (pK 1 = 5.0) and provides buffering and removal of Al by mineral precipitation from pH 4&ndash;5.5. Dissolved sulfate behaves conservatively because the amount removed from solution by precipitation is usually too small relative to the high concentrations in the water column and relative to the flow rate of the water.

Applied Geochemistry

Targeted metabolomics characterizes metabolite occurrence and variability in stable freshwater mussel populations

Freshwater mussels (order Unionida) play a key role in freshwater systems as ecosystem engineers and indicators of aquatic ecosystem health. The fauna is globally imperilled due to a diversity of suspected factors; however, causes for many population declines and mortality events remain unconfirmed due partly to limited health assessment tools. Mussel-monitoring activities often rely on population-level measurements, such as abundance and age structure, which reflect delayed responses to environmental conditions. Measures of organismal health would enable preemptive detection of declining condition before population-level effects manifest. Metabolomic analysis can identify shifts in biochemical pathways in response to stressors and changing environmental conditions; however, interpretation of the results requires information on inherent variability of metabolite concentrations in mussel populations. We targeted metabolites in the haemolymph of two common mussels, Lampsilis cardium and Lampsilis siliquoidea , from three Indiana streams (USA) using ultra-high-performance liquid chromatography combined with quadrupole time-of-flight mass spectroscopy. The influence of species, stream and sex on metabolite variability was examined with distance-based redundancy analysis. Metabolite variability was most influenced by species, followed by site and sex. Inter- and intraspecies metabolite variability among sexes was less distinct than differences among locations. We further categorized metabolites by occurrence and variability in mussel populations. Metabolites with high occurrence (Categories 1 and 2) included those indicative of energy status (catabolism versus anabolism; arginine, proline, carnitine, nicotinic acid, pantothenic acid), oxidative stress (proline, glutamine, glutamate) and protein metabolism (thymidine, cytidine, inosine). Metabolites with lower occurrence (Category 3) are constituents of assorted metabolic pathways and can be important biomarkers with additional temporal sampling to characterize their variability. These data provide a reference for future temporal (before/after) monitoring and for studies of stressor–metabolite linkages in freshwater mussels.

Indiana

Development and calibration of HEC–RAS hydraulic, temperature, and nutrient models for the Mohawk River, New York

In support of a preliminary analysis performed by New York State Department of Environmental Conservation that found elevated nutrient levels along selected reaches of the Mohawk River, a one-dimensional, unsteady hydraulic and water-quality model (Hydrologic Engineering Center River Analysis System Nutrient Simulation Module 1 [HEC–RAS NSM I]) was developed by the U.S. Geological Survey for the 127-mile reach of the Mohawk River between Rome and Cohoes, New York. The model was designed to accurately simulate within-channel flow conditions for this highly regulated, control-structure dense river reach. The model was calibrated for the period of May through September 2016 using available streamflow, temperature, and water-quality data. Nitrogen, phosphorus, dissolved oxygen, and water column algae were balanced within the model; however, the nutrient model calibration was focused on phosphorus. The HEC–RAS hydraulic model simulated streamflow adequately at the calibration locations with observed and simulated daily flows demonstrating coefficient of determination ( r 2 ) values ranging from 0.91 to 0.97, mean absolute error ranging from 15–20 percent, and bias ranging from −7 to 16 percent. The water temperature model within HEC–RAS NSM I demonstrated remarkable ability to simulate water temperature: typical water temperature errors were less than 1.0 degree Celsius (°C). Simulated water temperature results closely tracked observed continuous water temperature data at three locations on the Mohawk River, with mean absolute error for the 2016 study period ranging from 0.87 to 0.90 °C, and a root mean square error of 1.00 to 1.07 °C. Performance criteria for the water-quality (nutrient) model were applied differently than the water temperature model because of the temporally coarse discrete samples collected for the project. The average difference between final simulated concentrations and observed concentrations of organic phosphorus for all sample locations was within 0.01 milligrams per liter (mg/L) and within 0.09 mg/L for orthophosphate using all locations except Rome, which was within 0.25 mg/L. The calibrated model was used to implement nine phosphorus reduction scenarios by applying reductions to wastewater treatment plant effluent concentrations within the model. Monthly mean differences were computed for five comparison locations. Scenario results were generally linear and predictable; scenarios implementing the highest reductions showed correspondingly larger differences in Mohawk River concentrations downstream from the wastewater treatment plants associated with those reductions. The largest monthly mean differences were realized from reduction scenario nine and ranged from −0.018 to −0.076 mg/L for organic phosphorus and from 0.001 to −0.138 mg/L for orthophosphate.

New York

Effects of climate change on the hydrologic and hydraulic response of the Caulks Creek basin, Wildwood, Missouri

The city of Wildwood, Missouri, has identified fluvial erosion along Caulks Creek as a management priority due to potential effects to infrastructure and property. The upper and middle reaches of Caulks Creek flow intermittently (only immediately after precipitation), whereas the lower reach flows perennially. This study examines the effects of climate change and added storage on the hydrologic and hydraulic response of the Caulks Creek Basin to design storms. The study uses hydrologic (Hydrologic Engineering Center Hydrologic Modeling System – HEC-HMS) and hydraulic (Hydrologic Engineering Center River Analysis System – HEC-RAS) models furnished by the Federal Emergency Management Agency (FEMA). HEC-HMS simulations were used to quantify the peak, volume, and timing of the flow response to a suite of design storms under both normal and wet antecedent conditions and for both the existing storage structures and new storage in the basin. The suite of design storms included all combinations of the following: (a) storm durations: 6-hour and 24-hour, (b) annual exceedance probabilities: 0.5, 0.2, 0.1, 0.04, 0.02, and 0.01, (c) climate conditions: current, 30-year, and 80-year predictions of future climate from the Coupled Model Intercomparison Project (CMIP) Climate Data Processing Tool. Additionally, for a selection of scenarios, results from the HEC-HMS simulations were used as boundary conditions for two-dimensional (2D) HEC-RAS simulations aimed at understanding how the distribution of velocity, shear stress, and stream power throughout the stream may be affected by projected changes in climate.

Missouri

The 2023 US 50-State National Seismic Hazard Model: Overview and implications

The US National Seismic Hazard Model (NSHM) was updated in 2023 for all 50 states using new science on seismicity, fault ruptures, ground motions, and probabilistic techniques to produce a standard of practice for public policy and other engineering applications (defined for return periods greater than ∼475 or less than ∼10,000 years). Changes in 2023 time-independent seismic hazard (both increases and decreases compared to previous NSHMs) are substantial because the new model considers more data and updated earthquake rupture forecasts and ground-motion components. In developing the 2023 model, we tried to apply best available or applicable science based on advice of co-authors, more than 50 reviewers, and hundreds of hazard scientists and end-users, who attended public workshops and provided technical inputs. The hazard assessment incorporates new catalogs, declustering algorithms, gridded seismicity models, magnitude-scaling equations, fault-based structural and deformation models, multi-fault earthquake rupture forecast models, semi-empirical and simulation-based ground-motion models, and site amplification models conditioned on shear-wave velocities of the upper 30 m of soil and deeper sedimentary basin structures. Seismic hazard calculations yield hazard curves at hundreds of thousands of sites, ground-motion maps, uniform-hazard response spectra, and disaggregations developed for pseudo-spectral accelerations at 21 oscillator periods and two peak parameters, Modified Mercalli Intensity, and 8 site classes required by building codes and other public policy applications. Tests show the new model is consistent with past ShakeMap intensity observations. Sensitivity and uncertainty assessments ensure resulting ground motions are compatible with known hazard information and highlight the range and causes of variability in ground motions. We produce several impact products including building seismic design criteria, intensity maps, planning scenarios, and engineering risk assessments showing the potential physical and social impacts. These applications provide a basis for assessing, planning, and mitigating the effects of future earthquakes.

Earthquake Spectra

Digital geospatial presentation of geoelectrical and geotechnical data for the lower American River and flood plain, east Sacramento, California

To characterize the extent and thickness of lithologic units that may have differing scour potential, the U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, has performed several geoelectrical surveys of the lower American River channel and flood plain between Cal Expo and the Rio Americano High School in east Sacramento, California. Additional geotechnical data have been collected by the U.S. Army Corps of Engineers and its contractors. Data resulting from these surveys have been compiled into similar database formats and converted to uniform geospatial datums and projections. These data have been visualized in a digital three-dimensional framework project that can be viewed using freely available software. These data facilitate a comprehensive analysis of the resistivity structure underlying the lower American River corridor and assist in levee system management.

California

Modified level II streambed-scour analysis for structure I-65-85-5527 crossing Sugar Creek in Johnson County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sediment transport data are evaluated to calculate the depth of scour that may result when a given discharge is routed through a bridge opening. The results of the modified Level II analysis for structure 1-65-85-5527 on Interstate 65 crossing Sugar Creek in Johnson County, Indiana, are presented. The site is near the town of Amity in the southeastern part of Johnson County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 26.8 feet for the modeled discharge of 26,000 cubic feet per second and approximately 30.8 feet for the modeled discharge of 34,100 cubic feet per second

Indiana

Modified level II streambed-scour analysis for structure I-70-104-5128 crossing Brandywine Creek in Hancock County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sedient-transport data are evaluated to calculate the depth of scour that may result when given discharge is routed through a bridge opening. the results of the modified Levell II analysis for structure I-70-104-5128 on Interstate 70 crossing Brandywine Creek in Hancock County, Indiana, are presented. The site is near the town of Greenfield in the central part of Hancock County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 6.5 feet for the modeled discharge of 6,900 cubic feet per second and approximately 8.0 feet for the modeled discharge of 9,140 cubic feet per second.

Indiana

Modified level II streambed-scour analysis for structure I-69-87-4781 crossing Wabash River in Huntington County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sediment transport data are evaluated to calculate the depth of scour that may result when a given discharge is routed through a bridge opening. The results of the modified Level II analysis for structure 1-69-87-4781 on Interstate 69 crossing Wabash River in Huntington County, Indiana, are presented. The site is near the town of Markle in the eastern part of Huntington County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 13.1 feet for the modeled discharge of 10,600 cubic feet per second and approximately 14.6 feet for the modeled discharge of 17,000 cubic feet per second.

Indiana

Modified level II streambed-scour analysis for structure I-74-70-4437 crossing Eagle Creek in Marion County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sedimenttransport data are evaluated to calculate the depth of scour that may result when a given discharge is routed through a bridge opening. The results of the modified Level II analysis for structure 1-74-70-4437 on Interstate 74 crossing Eagle Creek in Marion County, Indiana, are presented. The site is near the town of Clermont in the northwestern part of Marion County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 16.0 feet for the modeled discharge of 22,700 cubic feet per second and approximately 31.7 feet for the modeled discharge of 31,600 cubic feet per second.

Indiana

Modified level II streambed-scour analysis for structure I-70-35-5245 crossing Big Walnut Creek in Putnam County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sedimenttransport data are evaluated to calculate the depth of scour that may result when a given discharge is routed through a bridge opening. The results of the modified Level II analysis for structure 1-70-35-5245 on Interstate 70 crossing Big Walnut Creek in Pumam.County, Indiana, are presented. The site is near the town of Manhattan in the southwestern part of Putnam County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 17.0 feet for the modeled discharge of 29,200 cubic feet per second and approximately 30.9 feet for the modeled discharge of 49,600 cubic feet per second.

Indiana

Modified level II streambed-scour analysis for structure I-69-16-5324 crossing Fosters Branch in Madison County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sediment transport data are evaluated to calculate the depth of scour that may result when a given discharge is routed through a bridge opening. The results of the modified Level II analysis for structure 1-69-16-5324 on Interstate 69 crossing Fosters Branch in Madison County, Indiana, are presented. The site is near the town of Ingalls in the southwestern part of Madison County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 8.0 feet for the modeled discharge of 1,600 cubic feet per second and approximately 12.8 feet for the modeled discharge of 2,720 cubic feet per second.

Indianapolis

Modified level II streambed-scour analysis for structure I-65-118-4838 crossing Crooked Creek in Marion County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sedimenttransport data are evaluated to calculate the depth of scour that may result when a given discharge is routed through a bridge opening. The results of the modified Level II analysis for structure 1-65-118-4838 on Interstate 65 crossing Crooked Creek in Marion County, Indiana, are presented. The site is in the city of Indianapolis in the central part of Marion County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 8.3 feet for the modeled discharge of 7,000 cubic feet per second and approximately 9.2 feet for the modeled discharge of 9,870 cubic feet per second.

Indiana

Modified level II streambed-scour analysis for structure I-64-108-5658 crossing Indian Creek in Harrison County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sedient-transport data are evaluated to calculate the depth of scour that may result when given discharge is routed through a bridge opening. the results of the modified Levell II analysis for structure I-64-108-5658 on Interstate 64 crossing Indian Creek in Harrison County, Indiana, are presented. The site is near the town of Corydon in the central part of Harrison County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 6.6 feet for the modeled discharge of 26,000 cubic feet per second and approximately 8.0 feet for the modeled discharge of 34,000 cubic feet per second.

Indiana

Modified level II streambed-scour analysis for structure I-74-32-4946 crossing Sugar Creek in Montgomery County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sedient-transport data are evaluated to calculate the depth of scour that may result when given discharge is routed through a bridge opening. The results of the modified Levell II analysis for structure I-74-32-4946 on Interstate 74 crossing Sugar Creek in Montgomery County, Indiana are presented. The site is near the town of Crawfordsville in the central part of Montgomery County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 13.0 feet for the modeled discharge of 3,000 cubic feet per second and approximately 15.1 feet for the modeled discharge of 41,900 cubic feet per second.

Indiana

Modified level II streambed-scour analysis for structure I-164-7-6974 crossing Schlensker Ditch in Vanderburgh County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sedient-transport data are evaluated to calculate the depth of scour that may result when given discharge is routed through a bridge opening. the results of the modified Levell II analysis for structure I-674-7-6974 on Interstate 164 crossing Schlensker Ditch in Vanderburgh County, Indiana, are presented. The site is near the town of Daylight in the northwestern part of Vanderburgh County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 176 feet for the modeled discharge of 2,100 cubic feet per second and approximately 33.4 feet for the modeled discharge of 2,940 cubic feet per second.

Indiana

Modified level II streambed-scour analysis for structure I-69-76-4775 crossing Salamonie River in Huntington County, Indiana

Level II scour evaluations follow a process in which hydrologic, hydraulic, and sediment transport data are evaluated to calculate the depth of scour that may result when a given discharge is routed through a bridge opening. The results of the modified Level II analysis for structure 1-69-76-4775 on Interstate 69 crossing Salamonie River in Huntington County, Indiana, are presented. The site is near the town of Warren in the southeastern part of Huntington County. Scour depths were computed with the Water Surface PROfile model, version V050196, which incorporates the scour-calculation procedures outlined in Hydraulic Engineering Circular No. 18. Total scour depths at the piers were approximately 13.7 feet for the modeled discharge of 15,800 cubic feet per second and approximately 20.9 feet for the modeled discharge of 26,900 cubic feet per second.

Indiana