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Contaminants in urban waters—Science capabilities of the U.S. Geological Survey

Streams and estuaries with urban watersheds commonly exhibit increased streamflow and decreased base flow; diminished stream-channel stability; excessive amounts of contaminants such as pesticides, metals, industrial and municipal waste, and combustion products; and alterations to biotic community structure. Collectively, these detrimental effects have been termed the “urban-stream syndrome.” Water-resource managers seek to lessen the effects on receiving water bodies of new urban development and remediate the effects in areas of existing urbanization. Similarly, the scientific community has produced extensive research on these topics, with researchers from the U.S. Geological Survey (USGS) leading many studies of urban streams and the processes responsible for the urban-stream syndrome. Increasingly, USGS studies are evaluating the effects of management and restoration activities to better understand how urban waters respond to the implementation of management practices. The USGS has expertise in collecting and interpreting data for many physical, chemical, and ecological processes in urban waters and, thus, provides holistic assessments to inform managers of urban water resources.

Fact Sheet

Urban development and stream ecosystem health—Science capabilities of the U.S. Geological Survey

Urban development creates multiple stressors that can degrade stream ecosystems by changing stream hydrology, water quality, and physical habitat. Contaminants, habitat destruction, and increasing streamflow variability resulting from urban development have been associated with the disruption of biological communities, particularly the loss of sensitive aquatic biota. Understanding how algal, invertebrate, and fish communities respond to these physical and chemical stressors can provide important clues as to how streams should be managed to protect stream ecosystems as a watershed becomes increasingly urbanized. The U.S. Geological Survey continues to lead monitoring efforts and scientific studies on the effects of urban development on stream ecosystems in metropolitan areas across the United States.

Fact Sheet

Pollinator conservation and climate science at the U.S. Geological Survey

Introduction Ecosystems—whether agricultural, urban, or natural—depend on pollinators, great and small. Pollinators in the form of bees, birds, butterflies, bats, and even moths provide vital, but often invisible services, from contributing to biodiverse terrestrial wildlife and plant communities to supporting healthy watersheds. Pollinator declines worldwide have been noted as land-use and climate changes occur on the landscape. This is alarming because up to 75 percent of crop species that are important for human food production depend on pollinators for production. Biodiversity of pollinators in the United States includes more than 4,000 species of insects, birds, and mammals. Pollinator species in the United States are in crisis based on broad-scale changes in land-use and climate. The Committee on the Status of Pollinators in North America summarized active and passive management alternatives to benefit pollinators and reduce their decline. Because assessment of pollinators in the United States has historically lagged behind other regions of the world, the Committee challenged the U.S. Geological Survey (USGS) and U.S. Fish and Wildlife Service (USFWS) to develop conservation plans, for pollinators, including quantification of the effects of climate change. As an example of the immediate need to focus efforts on pollinator conservation, Inouye and others cited the USFWS’s 2017 listing of the rusty-patched bumble bee ( Bombus affinis ) as Endangered under the U.S. Endangered Species Act (ESA) of 1973. Strategies are developed to accomplish pollinator conservation goals and the USGS is contributing scientific expertise toward those goals.

Fact Sheet

Effects of sea lamprey (Petromyzon marinus) control in the Great Lakes on aquatic plants, invertebrates and amphibians

The chemicals 3-trifluoromethyl-4-nitrophenol (TFM) or a combination of TFM and 2a??,5-dichloro-4a??-nitrosalicylanilide (Bayer 73) have been used to control the sea lamprey (Petromyzon marinus) in the Great Lakes for about 20 yr. These chemicals cause some mortalities of Oligochaeta and Hirudinea, immature forms of Ephemeroptera (Hexagenia sp.), and certain Trichoptera, Simuliidae, and Amphibia (Necturus sp.). The combination of TFM and Bayer 73 may affect some Pelecypoda and Gastropoda, but its overall effects on invertebrates are probably less than those of TFM alone. Granular Bayer 73 is likely to induce mortalities among oligochaetes, microcrustaceans, chironomids, and pelecypods. No evidence exists that the lampricides have caused the catastrophic decline or disappearance of any species. The overall impact of chemical control of sea lampreys on aquatic communities has been minor compared with the benefits derived.

Canadian Journal of Fisheries and Aquatic Sciences

The arctic water resource vulnerability index: An integrated assessment tool for community resilience and vulnerability with respect to freshwater

People in the Arctic face uncertainty in their daily lives as they contend with environmental changes at a range of scales from local to global. Freshwater is a critical resource to people, and although water resource indicators have been developed that operate from regional to global scales and for midlatitude to equatorial environments, no appropriate index exists for assessing the vulnerability of Arctic communities to changing water resources at the local scale. The Arctic Water Resource Vulnerability Index (AWRVI) is proposed as a tool that Arctic communities can use to assess their relative vulnerability-resilience to changes in their water resources from a variety of biophysical and socioeconomic processes. The AWRVI is based on a social-ecological systems perspective that includes physical and social indicators of change and is demonstrated in three case study communities/watersheds in Alaska. These results highlight the value of communities engaging in the process of using the AWRVI and the diagnostic capability of examining the suite of constituent physical and social scores rather than the total AWRVI score alone. ?? 2008 Springer Science+Business Media, LLC.

Environmental Management

Birdwatching preferences reveal synergies and tradeoffs among recreation, carbon, and fisheries ecosystem services in Pacific Northwest estuaries, USA

Coastal ecosystems provide multiple ecosystem services that are valued in diverse ways. The Nisqually River Delta (the Delta), an estuary in Puget Sound, Washington, U.S.A., is co-managed by the Nisqually Indian Tribe and the Billy Frank Jr. Nisqually National Wildlife Refuge. In an ecosystem services assessment, we used different service-appropriate methods including citizen science, statistical and geospatial models, and scenario analysis to evaluate three ecosystem services – recreational birdwatching, soil carbon accumulation and fishery production – indicated as priorities for the Refuge, Nisqually Indian Tribe, and surrounding communities. We developed a generalized additive mixed model set based on eBird mobile application birdwatching observations to understand the biological and landscape features that influence birdwatching and to project birdwatching visitation based on scenarios of Delta habitat change. We evaluated ecosystem service synergies and tradeoffs associated with habitat change for three coastal habitat types using scenario outputs from the birdwatching model and published results on Delta soil carbon accumulation and fishery production. The highest-ranked birdwatching models explained 88 % of the deviance and showed that visitation was greatest in winter months when distance to major cities was approximately 20 km. Recreational birdwatching increased with increasing area of forested wetland, emergent wetland, aquatic vegetation bed, open access, and total estuary. With increasing forested and emergent wetland area, recreational birdwatching, out-migrating juvenile Chinook salmon weight and soil carbon accumulation all increased. With increasing aquatic vegetation bed (resulting from sea level rise), recreational birdwatching increased, but salmon weight and soil carbon accumulation decreased. We identified practical ways in which ecosystem services may be incorporated into adaptive management frameworks that support climate adaptation decision making. This study illustrated how use of ecosystem services can help managers make decisions that have greater benefit for wildlife and people, communicate the societal value of decisions and increase local support and participation.

Washington

A multi-metric assessment of environmental contaminant exposure and effects in an urbanized reach of the Charles River near Watertown, Massachusetts

The Charles River Project provided an opportunity to simultaneously deploy a combination of biomonitoring techniques routinely used by the U.S. Geological Survey National Water Quality Assessment Program, the Biomonitoring of Environmental Status and Trends Project, and the Contaminant Biology Program at an urban site suspected to be contaminated with polycyclic aromatic hydrocarbons. In addition to these standardized methods, additional techniques were used to further elucidate contaminant exposure and potential impacts of exposure on biota. The purpose of the study was to generate a comprehensive, multi-metric data set to support assessment of contaminant exposure and effects at the site. Furthermore, the data set could be assessed to determine the relative performance of the standardized method suites typically used by the National Water Quality Assessment Program and the Biomonitoring of Environmental Status and Trends Project, as well as the additional biomonitoring methods used in the study to demonstrate ecological effects of contaminant exposure. The Contaminant Effects Workgroup, an advisory committee of the U.S. Geological Survey/Contaminant Biology Program, identified polycyclic aromatic hydrocarbons as the contaminant class of greatest concern in urban streams of all sizes. The reach of the Charles River near Watertown, Massachusetts, was selected as the site for this study based on the suspected presence of polycyclic aromatic hydrocarbon contamination and the presence of common carp ( Cyprinus carpio ), largemouth bass ( Micropterus salmoides ), and white sucker ( Catostomus commersoni ). All of these fish have extensive contaminant-exposure profiles related to polycyclic aromatic hydrocarbons and other environmental contaminants. This project represented a collaboration of universities, Department of the Interior bureaus including multiple components of the USGS (Biological Resources Discipline and Water Resources Discipline Science Centers, the Contaminant Biology Program, and the Status and Trends of Biological Resources Program), and the U.S. Fish and Wildlife Service. Samples for analyzing water chemistry, sediment chemistry and toxicity, fish community structure, tissue chemistry, and fish (20 carp, 20 bass, and 40 white sucker) and invertebrate pathology were collected in late August, 2005. This report provides results from the analyses of fish pathology, biomarkers of exposure and effects (reproductive, carcinogenic, genotoxic, and immunologic), sediment chemistry, toxicity, and fish and invertebrate community structure.

Massachusetts

U.S. Department of the Interior Climate Science Centers and U.S. Geological Survey National Climate Change and Wildlife Science Center—Annual report for 2015

2015 was another great year for the Department of the Interior (DOI) Climate Science Centers (CSCs) and U.S. Geological Survey (USGS) National Climate Change and Wildlife Science Center (NCCWSC) network. The DOI CSCs and USGS NCCWSC continued their mission of providing the science, data, and tools that are needed for on-the-ground decision making by natural and cultural resource managers to address the effects of climate change on fish, wildlife, ecosystems, and communities. Our many accomplishments in 2015 included initiating a national effort to understand the influence of drought on wildlife and ecosystems; providing numerous opportunities for students and early career researchers to expand their networks and learn more about climate change effects; and working with tribes and indigenous communities to expand their knowledge of and preparation for the impacts of climate change on important resources and traditional ways of living. Here we illustrate some of these 2015 activities from across the CSCs and NCCWSC.

Open-File Report

Natural resource mitigation, adaptation and research needs related to climate change in the Great Basin and Mojave Desert

This report synthesizes the knowledge, opinions, and concerns of many Federal and State land managers, scientists, stakeholders, and partners from a workshop, held at the University of Nevada, Las Vegas, on April 20-22, 2010. Land managers, research scientists, and resource specialists identified common concerns regarding the potential effects of climate change on public lands and natural resources in the Great Basin and Mojave Desert and developed recommendations for mitigation, adaptation, and research needs. Water and, conversely, the effects of drought emerged as a common theme in all breakout sessions on terrestrial and aquatic species at risk, managing across boundaries, monitoring, and ecosystem services. Climate change models for the southwestern deserts predict general warming and drying with increasing precipitation variability year to year. Scientists noted that under these changing conditions the past may no longer be a guide to the future in which managers envision increasing conflicts between human water uses and sustaining ecosystems. Increasing environmental stress also is expected as a consequence of shifting ecosystem boundaries and species distributions, expansion of non-native species, and decoupling of biotic mutualisms, leading to increasingly unstable biologic communities. Managers uniformly expressed a desire to work across management and agency boundaries at a landscape scale but conceded that conflicting agency missions and budgetary constraints often impede collaboration. More and better science is needed to cope with the effects of climate change but, perhaps even more important is the application of science to management issues using the methods of adaptive management based on long-term monitoring to assess the merits of management actions. Access to data is essential for science-based land management. Basic inventories, spatial databases, baseline condition assessments, data quality assurance, and data sharing were identified as top information priorities by all participants at this workshop. Optimizing the utility of ecosystem monitoring data will require standardizing monitoring protocols across agencies. Better communication among researchers and managers and cooperation through partnerships to manage resources across boundaries were emphasized as necessary for adapting to changing climatic conditions. However, even these strategies may be insufficient unless policy mandates, agency missions, and funding are coordinated at a high level.

Scientific Investigations Report

Photographic evaluation of the impacts of bottom fishing on benthic epifauna

The gravel sediment habitat on the northern edge of Georges Bank (East coast of North America) is an important nursery area for juvenile fish, and the site of a productive scallop fishery. During two cruises to this area in 1994 we made photographic transects at sites of varying depths that experience varying degrees of disturbance from otter trawling and scallop dredging. Differences between sites were quantified by analyzing videos and still photographs of the sea bottom. Videos were analyzed for sediment types and organism abundance. In the still photos, the percentages of the bottom covered by bushy, plant-like organisms and colonial worm tubes (Filograna implexa) were determined, as was the presence/absence of encrusting bryozoa. Non-colonial organisms were also identified as specifically as possible and sediment type was quantified. Significant differences between disturbed and undisturbed areas were found for the variables measured in the still photos; colonial epifaunal species were conspicuously less abundant at disturbed sites. Results from the videos and still photos were generally consistent although less detail was visible in the videos. Emergent colonial epifauna provide a complex habitat for shrimp, polychaetes, brittle stars and small fish at undisturbed sites. Bottom fishing removes this epifauna, thereby reducing the complexity and species diversity of the benthic community. (C) 2000 International Council for the Exploration of the Sea.

Georges Bank

Fish community dynamics following dam removal in a fragmented agricultural stream

Habitat fragmentation impedes dispersal of aquatic fauna, and barrier removal is increasingly used to increase stream network connectivity and facilitate fish dispersal. Improved understanding of fish community response to barrier removal is needed, especially in fragmented agricultural streams where numerous antiquated dams are likely destined for removal. We examined post-removal responses in two distinct fish communities formerly separated by a small aging mill dam. The dam was removed midway through the 6 year study, enabling passage for downstream fishes affiliated with a connected reservoir into previously inaccessible habitat, thus creating the potential for taxonomic homogenization between upstream and downstream communities. Both communities changed substantially post-removal. Two previously excluded species (white sucker, yellow perch) established substantial populations upstream of the former dam, contributing to a doubling of total fish biomass. Meanwhile, numerical density of pre-existing upstream fishes declined. Downstream, largemouth bass density was inversely correlated with prey fish density throughout the study, while post-removal declines in bluegill density coincided with cooler water temperature and increased suspended and benthic fine sediment. Upstream and downstream fish communities became more similar post-removal, represented by a shift in Bray-Curtis index from 14 to 41 % similarity. Our findings emphasize that barrier removal in highly fragmented stream networks can facilitate the unintended and possibly undesirable spread of species into headwater streams, including dispersal of species from remaining reservoirs. We suggest that knowledge of dispersal patterns for key piscivore and competitor species in both the target system and neighboring systems may help predict community outcomes following barrier removal.

Aquatic Sciences

The global dispersion of pathogenic microorganisms by dust storms and its relevance to agriculture

Dust storms move an estimated 500–5000 Tg of soil through Earth’s atmosphere every year. Dust-storm transport of topsoils may have positive effects such as fertilization of aquatic and terrestrial ecosystems and the evolution of soils in proximal and distal environments. Negative effects may include the stripping of nutrient-rich topsoils from source regions, sandblasting of plant life in downwind environments, the fertilization of harmful algal blooms, and the transport of toxins (e.g., metals, pesticides, herbicides, etc.) and pathogenic microorganisms. With respect to the long-range dispersion of microorganisms and more specifically pathogens, research is just beginning to demonstrate the quantity and diversity of organisms that can survive this type of transport. Most studies to date have utilized different assays to identify microorganisms and microbial communities using predominately culture-based, and more recently nonculture-based, methodologies. There is a clear need for international-scale research efforts that apply standardized methods to advance this field of science. Here we present a review of dust-borne microorganisms with a focus on their relevance to agronomy.

Book chapter

Metamorphosis enhances the effects of metal exposure on the mayfly, Centroptilum triangulifer

The response of larval aquatic insects to stressors such as metals is used to assess the ecological condition of streams worldwide. However, nearly all larval insects metamorphose from aquatic larvae to winged adults, and recent surveys indicate that adults may be a more sensitive indicator of stream metal toxicity than larvae. One hypothesis to explain this pattern is that insects exposed to elevated metal in their larval stages have a reduced ability to successfully complete metamorphosis. To test this hypothesis we exposed late-instar larvae of the mayfly, Centroptilum triangulifer , to an aqueous Zn gradient (32–476 μg/L) in the laboratory. After 6 days of exposure, when metamorphosis began, larval survival was unaffected by zinc. However, Zn reduced wingpad development at concentrations above 139 μg/L. In contrast, emergence of subimagos and imagos tended to decline with any increase in Zn. At Zn concentrations below 105 μg/L (hardness-adjusted aquatic life criterion), survival between the wingpad and subimago stages declined 5-fold across the Zn gradient. These results support the hypothesis that metamorphosis may be a survival bottleneck, particularly in contaminated streams. Thus, death during metamorphosis may be a key mechanism explaining how stream metal contamination can impact terrestrial communities by reducing aquatic insect emergence.

Environmental Science & Technology

Structure of marine predator and prey communities along environmental gradients in a glaciated fjord

Spatial patterns of marine predator communities are influenced to varying degrees by prey distribution and environmental gradients. We examined physical and biological attributes of an estuarine fjord with strong glacier influence to determine the factors that most influence the structure of predator and prey communities. Our results suggest that some species, such as walleye pollock ( Theragra chalcogramma ), black-legged kittiwake ( Rissa tridactyla ), and glaucous-winged gull ( Larus glaucescens ), were widely distributed across environmental gradients, indicating less specialization, whereas species such as capelin ( Mallotus villosus ), harbor seal ( Phoca vitulina ), and Kittlitz's murrelet ( Brachyramphus brevirostris ) appeared to have more specialized habitat requirements related to glacial influence. We found that upper trophic level communities were well correlated with their mid trophic level prey community, but strong physical gradients in photic depth, temperature, and nutrients played an important role in community structure as well. Mid-trophic level forage fish communities were correlated with the physical gradients more closely than upper trophic levels were, and they showed strong affinity to tidewater glaciers. Silica was closely correlated with the distribution of fish communities, the mechanisms of which deserve further study.

Alaska

Water Budgets: Foundations for Effective Water-Resources and Environmental Management

INTRODUCTION Water budgets provide a means for evaluating availability and sustainability of a water supply. A water budget simply states that the rate of change in water stored in an area, such as a watershed, is balanced by the rate at which water flows into and out of the area. An understanding of water budgets and underlying hydrologic processes provides a foundation for effective water-resource and environmental planning and management. Observed changes in water budgets of an area over time can be used to assess the effects of climate variability and human activities on water resources. Comparison of water budgets from different areas allows the effects of factors such as geology, soils, vegetation, and land use on the hydrologic cycle to be quantified. Human activities affect the natural hydrologic cycle in many ways. Modifications of the land to accommodate agriculture, such as installation of drainage and irrigation systems, alter infiltration, runoff, evaporation, and plant transpiration rates. Buildings, roads, and parking lots in urban areas tend to increase runoff and decrease infiltration. Dams reduce flooding in many areas. Water budgets provide a basis for assessing how a natural or human-induced change in one part of the hydrologic cycle may affect other aspects of the cycle. This report provides an overview and qualitative description of water budgets as foundations for effective water-resources and environmental management of freshwater hydrologic systems. Perhaps of most interest to the hydrologic community, the concepts presented are also relevant to the fields of agriculture, atmospheric studies, meteorology, climatology, ecology, limnology, mining, water supply, flood control, reservoir management, wetland studies, pollution control, and other areas of science, society, and industry. The first part of the report describes water storage and movement in the atmosphere, on land surface, and in the subsurface, as well as water exchange among these compartments. Our ability to measure these phenomena and inherent uncertainties in measurement techniques also are discussed. The latter part of the report presents a number of case studies that illustrate how water-budget studies are conducted, documents how human activities affect water budgets, and describes how water budgets are used to address water and environmental issues.

Circular

Science plan for improving three-dimensional seismic velocity models in the San Francisco Bay region, 2019–24

This five-year science plan outlines short-term and long-term goals for improving three-dimensional seismic velocity models in the greater San Francisco Bay region as well as how to foster a community effort in reaching those goals. The short-term goals focus on improving the current U.S. Geological Survey San Francisco Bay region geologic and seismic velocity model using existing data. The long-term goals focus on acquiring new data and leveraging better analytic tools to improve the model and characterize the uncertainty. The plan describes opportunities for contributions by members of the community to develop these seismic velocity models, provides current and potential users with general information on where efforts will likely be focused to improve these models and how new versions of the models will be released, and outlines funding needs and obstacles for improving and maintaining such models. Several aspects of this plan, including how to foster a community effort, are independent of the geographic region and apply to other similar efforts.

California

Predicting recolonization patterns and interactions between potamodromous and anadromous salmonids in response to dam removal in the Elwha River, Washington State, USA

The restoration of salmonids in the Elwha River following dam removal will cause interactions between anadromous and potamodromous forms as recolonization occurs in upstream and downstream directions. Anadromous salmonids are expected to recolonize historic habitats, and rainbow trout (Oncorhynchus mykiss) and bull trout (Salvelinus confluentus) isolated above the dams for 90 years are expected to reestablish anadromy. We summarized the distribution and abundance of potamodromous salmonids, determined locations of spawning areas, and mapped natural barriers to fish migration at the watershed scale based on data collected from 1993 to 2006. Rainbow trout were far more abundant than bull trout throughout the watershed and both species were distributed up to river km 71. Spawning locations for bull trout and rainbow trout occurred in areas where we anticipate returning anadromous fish to spawn. Nonnative brook trout were confined to areas between and below the dams, and seasonal velocity barriers are expected to prevent their upstream movements. We hypothesize that the extent of interaction between potamodromous and anadromous salmonids will vary spatially due to natural barriers that will limit upstream-directed recolonization for some species of salmonids. Consequently, most competitive interactions will occur in the main stem and floodplain downstream of river km 25 and in larger tributaries. Understanding future responses of Pacific salmonids after dam removal in the Elwha River depends upon an understanding of existing conditions of the salmonid community upstream of the dams prior to dam removal.

Northwest Science

An illustrated landslide handbook for developing nations

As landslides continue to be a hazard that account for large numbers of human and animal casualties, property loss, and infrastructure damage, as well as impacts on the natural environment, it is incumbent on developed nations that resources be allocated to educate affected populations in less developed nations, and provide them with tools to effectively manage this hazard. Given that the engineering, planning and zoning, and mitigation techniques for landslide hazard reduction are more accessible to developed nations, it is crucial that such landslide hazard management tools be communicated to less developed nations in a language that is not overly technical, and provides information on basic scientific explanations on where, why and how landslides occur. The experiences of the United States, Canada, and many other nations demonstrate that, landslide science education, and techniques for reducing damaging landslide impacts may be presented in a manner that can be understood by the layperson. There are various methods through which this may be accomplished–community-level education, technology transfer, and active one-on-one outreach to national and local governments, and non-governmental organizations (NGOs), who disseminate information throughout the general population. The population at large can also benefit from the dissemination of landslide information directly to individual community members. The United States Geological Survey and the Geological Survey of Canada have just published and will distribute a universal landslide handbook that can be easily made available to emergency managers, local governments, and individuals. The handbook, “The Landslide Handbook: A Guide to Understanding Landslides” is initially published as U.S. Geological Survey Circular 1325, in English, available in print, and accessible on the internet. It is liberally illustrated with schematics and photographs, and provides the means for a basic understanding of landslides, with clearly-presented examples and explanations. The handbook will first be translated into Chinese, Spanish, and French and as a “public domain” document, it may be used without copyright issues, and will be free of charge to users. Support for users will be provided by both United States and Canadian geological surveys and those desiring more information will be urged to contact landslide personnel at these two agencies, through several means—email, telephone, and (or) FAX.

Conference Paper