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At least 577 records · Page 32Linked to original sources
USGS2007

Effects of nutrient enrichment on Prymnesium parvum population dynamics and toxicity: Results from field experiments, Lake Possum Kingdom, USA

Large fish kills associated with toxic populations of the haptophyte Prymnesium parvum occur worldwide. In the past 5 yr, incidences of P. parvum blooms in inland water bodies of Texas (USA) have increased dramatically, where cell densities in excess of 1 × 10 7 cells l –1 are typically observed. We conducted field experiments (Lake Possum Kingdom) during the fall and early spring of 28 d duration using 24 enclosures of 1.57 m 3 each. The experiments investigated the effect of nutrient enrichment, immigration of P. parvum and addition of barley straw extract on phytoplankton biomass and assemblage structure, P. parvum population density, zooplankton biomass and assemblage structure, bacteria, and toxicity. Nutrient enrichment stimulated P. parvum population growth beyond bloom proportions (>1 × 10 7 cells l –1 ). However, P. parvum did not dominate the assemblage under these conditions, as it does during natural blooms. Instead, euglenophytes and chlorophytes dominated. Toxicity, estimated using fish ( Pimephales promelas ) and cladoceran ( Daphnia magna ) bioassays and which is linked to P. parvum ’s allelopathic and mixotrophic effectiveness, was greatly reduced (eliminated in many cases) under conditions of nutrient enrichment. The suppression of toxicity by nutrient addition suggested that targeted and time-limited nutrient manipulations might be used to mitigate the effects of P. parvum blooms. Immigration of P. parvum into natural assemblages and addition of barley straw extract had no significant effect on plankton dynamics. Inter-Research 2007.

Texas↗
USGS1989

Gill tissue reactions in walleye Stizostedion vitreum vitreum and common carp Cyprinus carpio to glochidia of the freshwater mussel Lampsilis radiata siliquoidea

The glochidia of many freshwater mussels, which are obligate parasites on the gills, fins, and other body parts of specific fishes, attach to a suitable host, become encapsulated, and develop to the free-living juvenile stage. Using light and electron microscopy we compared gill tissue reactions in a suitable host (walleye Stizostedion vitreum vitreum ) and unsuitable host (common carp Cyprinus carpio ) infected with Lampsilis radiata siliquoidea . Encapsulation of glochidia on walleye gills was completed by 6 h post-infection at 20 to 22°C. Capsular formation and compaction were accompanied by a general increase in epithelioid cells. Fibrotic material appeared in capsules at about 48 h and virtually filled capsular cells from about Day 5 to Day 11 post-infection. Liberation of juvenile mussels was accompanied by thinning of the capsule from about Day 11 to Day l7. Although glochidia attached to the gills of common carp, few became encapsulated. By 48 h post-infection, preliminary capsular growth was evident and necrotic cells and cellular debris appeared at the edges of the growth. However, all glochidia were sloughed from carp gills by 60 h. Host specificity of L. radiata siliquoidea apparently depended on a combination of the attachment response of glochidia, differences in the encapsulation process, and tissue reactions in the fish.

Diseases of Aquatic Organisms↗
USGS1995

Characterization of a rhabdovirus isolated from carpione Salmo trutta carpio in Italy

A virus, strain 583, was isolated from carpione Salmo trutta carpio fry exhibiting high mortality. The virus was not neutralized by rabbit antisera against the fish rhabdoviruses viral haemorrhagic septicaemia virus (VHSV), infectious hematopoietic necrosis virus, eel rhabdovirus European X, spring viraemia of carp virus or pike fry rhabdovirus, or against the birnavirus infectious pancreatic necrosis virus. The virus replicated in several fish cell lines incubated at 20 to 25*C and grew optimally in the bluegill fry (BF-2) and fathead minnow (FHM) cell lines. Electron microscopy of infected BF-2 cell cultures revealed the presence of typical rhabdovirus particles, and immunofluorescent staining was observed using various polyclonal and monoclonal antibodies (MAbs) against Egtved virus, the causative agent of viral haemorrhagic septicaemia. The staining by a MAb against the nucleoprotein (N) of VHSV was particularly strong, a MAb against the glycoprotein (G) gave a moderate reaction, whereas a second MAb against the G protein and MAbs against the matrix proteins, M_(1) and M_(2), of VHSV did not react. Fluorescence titres using 3 rabbit antisera against whole Egtved virus varied between negative and moderately positive. Western blotting using polyclonal and monoclonal sera confirmed that both the N and G proteins of the carpione virus shared some epitopes with those of VHSV, but the M_(1) and M_(2) proteins did not. SDS-PAGE showed the structural proteins of the carpione virus produced a pattern typical of members of the Lyssavirus genus of the Rhabdoviridae and the molecular weights were very similar to those of VHSV, except for the M_(2) protein which was somewhat smaller. Infection trials showed the carpione virus induced high mortalities in carpione fry but not in rainbow trout Oncorhynchus mykiss fry. The carpione virus was clearly distinguishable from Egtved virus despite limited serological cross reaction. Since it was also easily distinguishable by immunofluorescence from the other fish rhabdoviruses included in the present study as well as in studies published elsewhere, it is concluded that the virus is a previously undescribed one. It is proposed that the virus be given the preliminary designation 'carpione rhabdovirus'.

Diseases of Aquatic Organisms↗
USGS2019

Isolation, characterization and molecular identification of a novel aquareovirus that infects the endangered fountain darter, Etheostoma fonticola

The fountain darter Etheostoma fonticola (FOD) is a federally endangered fish listed under the US Endangered Species Act. Here, we identified and characterized a novel aquareovirus isolated from wild fountain darters inhabiting the San Marcos River. This virus was propagated in Chinook salmon embryo (CHSE)-214, rainbow trout gonad-2 and fathead minnow cells at 15°C. The epithelioma papulosum cyprini cell line was refractory at all temperatures evaluated. High throughput sequencing technologies facilitated the complete genome sequencing of this virus utilizing ribosomal RNA-depleted RNA extracted from infected CHSE-214 cells. Conventional PCR primer sets were developed for the detection and confirmation of this virus to assist diagnostic screening methods. Phylogenetic analysis suggests this virus belongs to the Aquareovirus A genus. This research provides requisite initial data critical to support hatchery and refugia biosecurity measures for this endangered species.

Diseases of Aquatic Organisms↗
USGS2012

Variations of transcript profiles between sea otters Enhydra lutris from Prince William Sound, Alaska, and clinically normal reference otters

Development of blood leukocyte gene transcript profiles has the potential to expand condition assessments beyond those currently available to evaluate wildlife health, including sea otters Enhydra lutris , both individually and as populations. The 10 genes targeted in our study represent multiple physiological systems that play a role in immuno-modulation, inflammation, cell protection, tumor suppression, cellular stress-response, xenobiotic metabolizing enzymes, and antioxidant enzymes. These genes can be modified by biological, physical, or anthropogenic impacts and consequently provide information on the general type of stressors present in a given environment. We compared gene transcript profiles of sea otters sampled in 2008 among areas within Prince William Sound impacted to varying degrees by the 1989 ‘Exxon Valdez’ oil spill with those of captive and wild reference sea otters. Profiles of sea otters from Prince William Sound showed elevated transcription in genes associated with tumor formation, cell death, organic exposure, inflammation, and viral exposure when compared to the reference sea otter group, indicating possible recent and chronic exposure to organic contaminants. Sea otters from historically designated oiled areas within Prince William Sound 19 yr after the oil spill had higher transcription of genes associated with tumor formation, cell death, heat shock, and inflammation than those from areas designated as less impacted by the spill.

Alaska↗
USGS2014

Microbial aggregates within tissues infect a diversity of corals throughout the Indo-Pacific

Coral reefs are highly diverse ecosystems where symbioses play a pivotal role. Corals contain cell-associated microbial aggregates (CAMA), yet little is known about how widespread they are among coral species or the nature of the symbiotic relationship. Using histology, we found CAMA within 24 species of corals from 6 genera from Hawaii, American Samoa, Palmyra, Johnston Atoll, Guam, and Australia. Prevalence (%) of infection varied among coral genera: Acropora, Porites, and Pocillopora were commonly infected whereas Montipora were not. Acropora from the Western Pacific were significantly more likely to be infected with CAMA than those from the Central Pacific, whereas the reverse was true for Porites. Compared with apparently healthy colonies, tissues from diseased colonies were significantly more likely to have both surface and basal body walls infected. The close association of CAMA with host cells in numerous species of apparently healthy corals and lack of associated cell pathology reveals an intimate agent-host association. Furthermore, CAMA are Gram negative and in some corals may be related to chlamydia or rickettsia. We propose that CAMA in adult corals are facultative secondary symbionts that could play an important ecological role in some dominant coral genera in the Indo-Pacific. CAMA are important in the life histories of other animals, and more work is needed to understand their role in the distribution, evolution, physiology, and immunology of reef corals.

Marine Ecology Progress Series↗
USGS2022

Poplar Island: Understanding the development of a beneficial use restoration site

Poplar Island, like many other islands throughout the Chesapeake Bay, eroded from 460 hectares in 1847 to only 1.5 hectares by the 1990’s. However, the U.S. Army Corps of Engineers, Maryland Department of Transportation, and numerous other state and federal agencies selected this site as the location of a beneficial use project aimed at restoring remote island habitat in the Chesapeake Bay using clean dredge material. While monitoring efforts since the beginning of restoration efforts have documented extensive use of Poplar Island by numerous species across multiple taxa, these efforts have previously lacked context regarding underlying habitat patterns. However, such information is especially important on a site like Poplar Island where habitat distribution and availability can change dramatically between years due to ongoing construction efforts. To address this information gap we digitized annual aerial imagery of Poplar Island from 2006-2017 into 20 habitat classes. The resulting data layers demonstrate the transition of cells along the eastern side of the island from undeveloped cells to planted marsh cells, which matches trends seen in avian monitoring data. Similarly, our data display changes in the distribution of specific resources such as sand across the island, and how individual locations of interest such as constructed habitat islands have evolved over time. We believe that these data will provide critical insight into the factors influencing wildlife distribution patterns on Poplar Island, and will allow for the identification of management actions that may either be targeted or avoided in the planning of future beneficial use projects.

Maryland↗
USGS2012

Immunity to fish rhabdoviruses

Members of the family Rhabdoviridae are single-stranded RNA viruses and globally important pathogens of wild and cultured fish and thus relatively well studied in their respective hosts or other model systems. Here, we review the protective immune mechanisms that fish mount in response to rhabdovirus infections. Teleost fish possess the principal components of innate and adaptive immunity found in other vertebrates. Neutralizing antibodies are critical for long-term protection from fish rhabdoviruses, but several studies also indicate a role for cell-mediated immunity. Survival of acute rhabdoviral infection is also dependent on innate immunity, particularly the interferon (IFN) system that is rapidly induced in response to infection. Paradoxically, rhabdoviruses are sensitive to the effects of IFN but virulent rhabdoviruses can continue to replicate owing to the abilities of the matrix (M) protein to mediate host-cell shutoff and the non-virion (NV) protein to subvert programmed cell death and suppress functional IFN. While many basic features of the fish immune response to rhabdovirus infections are becoming better understood, much less is known about how factors in the environment affect the ecology of rhabdovirus infections in natural populations of aquatic animals.

Viruses↗
USGS2015

Downscaling global land-use/land-cover projections for use in region-level state-and-transition simulation modeling

Global land-use/land-cover (LULC) change projections and historical datasets are typically available at coarse grid resolutions and are often incompatible with modeling applications at local to regional scales. The difficulty of downscaling and reapportioning global gridded LULC change projections to regional boundaries is a barrier to the use of these datasets in a state-and-transition simulation model (STSM) framework. Here we compare three downscaling techniques to transform gridded LULC transitions into spatial scales and thematic LULC classes appropriate for use in a regional STSM. For each downscaling approach, Intergovernmental Panel on Climate Change (IPCC) Representative Concentration Pathway (RCP) LULC projections, at the 0.5 × 0.5 cell resolution, were downscaled to seven Level III ecoregions in the Pacific Northwest, United States. RCP transition values at each cell were downscaled based on the proportional distribution between ecoregions of (1) cell area, (2) land-cover composition derived from remotely-sensed imagery, and (3) historic LULC transition values from a LULC history database. Resulting downscaled LULC transition values were aggregated according to their bounding ecoregion and “cross-walked” to relevant LULC classes. Ecoregion-level LULC transition values were applied in a STSM projecting LULC change between 2005 and 2100. While each downscaling methods had advantages and disadvantages, downscaling using the historical land-use history dataset consistently apportioned RCP LULC transitions in agreement with historical observations. Regardless of the downscaling method, some LULC projections remain improbable and require further investigation.

AIMS Environmental Science↗
USGS1986

Immunoblot assay: a rapid and sensitive method for identification of salmonid fish viruses

An immunoblot assay was used to identify the viruses of infectious pancreatic necrosis, infectious hematopoietic necrosis, and viral hemorrhagic septicemia. Viral antigen in infected cell culture supernatant was adsorbed onto nitrocellulose membrane or Whatman 541 filter paper and detected by enzyme-linked immunosorbent assay techniques. The immunoblot assay took less than 4 hr to perform and required no special instrumentation. Assays using cell culture supernatant fluids showed immunoblot sensitivity was 10 5 –10 6 PFU/ml. Assay sensitivity, determined using purified virus, is 0.85–4.0 ng of viral antigen. The immunoblot assay was used to detect and identify virus in cell culture fluids.

Journal of Wildlife Diseases↗
USGS1991

Weights and hematology of wild black bears during hibernation

We compared weights and hematological profiles of adult (>3-yr-old) female black bears ( Ursus americanus ) during hibernation (after 8 January). We handled 28 bears one to four times (total of 47) over 4 yr of varying mast and berry production. Mean weight of lactating bears was greater ( P < 0.0001) than that of non-lactating females. White blood cells ( P < 0.05) and mean corpuscular volume ( P = 0.005) also differed between lactating and non-lactating bears. Hemoglobin ( P = 0.006) and mean corpuscular hemoglobin concentration ( P = 0.02) varied among years; values were lowest during 1975, following decreased precipitation and the occurrence of a second year of mast and berry crop shortages in a three-year period. Significant ( P < 0.05) interaction between reproductive status (lactating versus non-lactating) and study year for hemoglobin, red blood cells, and packed cell volume, and increased mean corpuscular volume, suggested a greater nutritional challenge for lactating females compared to non-lactating females during the 1975 denning season. Our data suggest that hematological characteristics of denning bears may be more sensitive than weights as indicators of annual changes in nutritional status; however, other influential factors, in addition to mast and berry crop production, remain to be examined.

Journal of Wildlife Diseases↗
USGS1992

Energy metabolism and hematology of white-tailed deer fawns

Resting metabolic rates, weight gains and hematologic profiles of six newborn, captive white-tailed deer ( Odocoileus virginianus ) fawns (four females, two males) were determined during the first 3 mo of life. Estimated mean daily weight gain of fawns was 0.2 kg. The regression equation for metabolic rate was: Metabolic rate (kcal/kg 0.75 /day) = 56.1 + 1.3 (age in days), r = 0.65, P < 0.001). Regression equations were also used to relate age to red blood cell count (RBC), hemoglobin concentration (Hb), packed cell volume, white blood cell count, mean corpuscular volume, mean corpuscular hemoglobin concentration (MCHC), and mean corpuscular hemoglobin. The age relationships of Hb, MCHC, and smaller RBC's were indicative of an increasing and more efficient oxygen-carrying and exchange capacity to fulfill the increasing metabolic demands for oxygen associated with increasing body size.

Journal of Wildlife Diseases↗
USGS1997

Hematologic and serum biochemical reference intervals for Florida panthers

Ninety-four blood samples were collected from 48 (29 males and 19 females) free-ranging Florida panthers ( Felis concolor coryi ) captured in southern Florida (USA) from 1983 to 1994 for routine hematological and serum biochemical analysis. Florida panthers in the northern portion of their range had significantly higher red blood cell (mean ± SD = 7.923 × 10 6 ± 0.854 × 10 6 /μl), hemoglobin (12.53 ± 1.66 g/dl), and packed cell volume (36.97 ± 4.27%) values compared to those of panthers localized in more southern parts of Florida (7.148 × 10 6 ± 1.045 × 10 6 /μl, 11.60 ± 1.62 g/dl, and 34.82 ± 5.99%, respectively). Adults had significantly higher mean serum total protein (7.50 ± 0.59 g/dl) and packed cell volume (36.90 ± 4.97%) values than juveniles (6.88 ± 0.49 g/dl and 34.54 ± 5.30%). However, mean serum albumin concentrations were significantly higher in juveniles (3.80 ± 0.26 g/dl) when compared to adult values (3.58 ± 0.26 g/dl). Mean serum calcium concentrations were significantly higher in juveniles (10.33 ± 0.39 mg/dl) than in adults (9.66 ± 0.45 mg/dl). Additionally, mean serum iron concentrations were significantly higher in those panthers of intergrade genetic stock compared to values in those of authentic genetic stock (105.6 ± 72.1 μg/dl versus 59.3 ± 19.7 μg/dl, respectively).

Florida↗
USGS1972

Some physiologic blood values of wild diving ducks

Blood samples were obtained from 54 canvasbacks ( Aythya valisineria ), 30 lesser scaup ( A. affinis ), 3 ring-necks ( A. collaris ), and 3 buffleheads ( Bucephala albeola ), which were wintering on Chesapeake Bay. These blood samples were used for: red blood cell counts (cans. 2.56 × 10 6 /mm 3 ; scaup 2.45 × 10 6 /mm 3 ; ring-necks 2.50 × 10 6 /mm 3 ; bufflehead 2.64 × 10 6 /mm 3 ), packed cell volume (cans. 52.2%; scaup 57.1%; ring-neck 49.1%; buffleheads 54.3%), total protein (cans. 4.4 g/100 ml; scaup 4.4 g/100 ml; ring-neck 3.5 g/100 ml; bufflehead 3.8 g/100 ml), erythrocyte measurements, and electrophoretic analysis of plasma and serum. Variations between individuals of the same species and sex were slight but a possible difference between male and female erythrocyte numbers and packed cell volumes was evident in the canvasback and scaup samples.

Maryland↗
USGS2020

Canine distemper virus in the sea otter population (Enhydra lutris) in Washington State, USA

Before 2001, all serosurveys for morbilliviruses in sea otters ( Enhydra lutris ) in California, Washington, and Alaska, USA, documented a 0% seroprevalence. The first published serologic detections of morbillivirus in sea otters occurred in 2001–02 in live-captured Washington sea otters, with a documented 80% seroprevalence. We conducted a retrospective study of sea otter cases from 1989 to 2010 compiled at the US Geological Survey, National Wildlife Health Center to identify cases of morbilliviral disease in Washington sea otters and to characterize the disease using immunohistochemistry, reverse transcription (RT)-PCR, genetic sequencing, virus isolation, and serology. We identified six cases of morbilliviral disease and 12 cases of morbilliviral infection in this population of sea otters during 2000–10. Significant histologic findings included inflammation in the white and gray matter of the brain characterized by lymphoplasmacytic perivascular cuffing, neuronal necrosis, and satellitosis in gray matter and by spongiosis, myelin degeneration, spheroids, and gemistocytes in white matter. Intranuclear and intracytoplasmic viral inclusion bodies were found in neurons, Purkinje cells, and glia. Immunohistochemistry for canine distemper virus (CDV) showed positive staining in neurons, glial cells, and cell processes. A pan-morbillivirus RT-PCR with subsequent restriction endonuclease digestion or sequencing identified CDV. Virus isolation was not successful. Two sea otters with morbilliviral encephalitis showed greater antibody titers to CDV than phocine distemper virus. Histologic changes were confined to the central nervous system and resembled neurologic canine distemper in domestic dogs. Cases of sea otters with morbilliviral infection without histologic changes could represent early infections or incompletely cleared sublethal infections. We found that morbillivirus was present in the Washington sea otter population as early as 2000, and we provide a description of the pathology of canine distemper in sea otters.

Washington↗
USGS1997

Debris-flow hazard map units from gridded probabilities

The common statistical practice of dividing a range of probabilities into equal probability intervals may not result in useful landslide-hazard map units for areas populated by equal-area cells, each of which has a unique probability. Most hazard map areas contain very large numbers of cells having low probability of failure, and as probability increases, the number of cells decreases in a non-linear fashion. Exploration of this distribution suggests that the spatial frequency of expected failures may be used to identify probability intervals that define map units. From a spatial database of gridded probabilities, map units that address the different objectives of land-use planners and emergency response officials can be defined.

Conference Paper↗
USGS1999

GIS characterization of spatially distributed lifeline damage

This paper describes the visualization of spatially distributed water pipeline damage following an earthquake using geographical information systems (GIS). Pipeline damage is expressed as a repair rate (RR). Repair rate contours are developed with GIS by dividing the study area into grid cells (n ?? n), determining the number of particular pipeline repairs in each grid cell, and dividing the number of repairs by the length of that pipeline in each cell area. The resulting contour plot is a two-dimensional visualization of point source damage. High damage zones are defined herein as areas with an RR value greater than the mean RR for the entire study area of interest. A hyperbolic relationship between visual display of high pipeline damage zones and grid size, n, was developed. The relationship is expressed in terms of two dimensionless parameters, threshold area coverage (TAC) and dimensionless grid size (DGS). The relationship is valid over a wide range of different map scales spanning approximately 1,200 km2 for the largest portion of the Los Angeles water distribution system to 1 km2 for the Marina in San Francisco. This relationship can aid GIS users to get sufficiently refined, but easily visualized, maps of damage patterns.

Technical Council on Lifeline Earthquake Engineeri↗
USGS2001

Mapping crustal heterogeneity using Lg propagation efficiency throughout the Middle East, Mediterranean, Southern Europe and Northern Africa

In this paper we describe a technique for mapping the lateral variation of Lg characteristics such as Lg blockage, efficient Lg propagation, and regions of very high attenuation in the Middle East, North Africa, Europe and the Mediterranean regions. Lg is used in a variety of seismological applications from magnitude estimation to identification of nuclear explosions for monitoring compliance with the Comprehensive Nuclear-Test-Ban Treaty (CTBT). These applications can give significantly biased results if the Lg phase is reduced or blocked by discontinuous structure or thin crust. Mapping these structures using quantitative techniques for determining Lg amplitude attenuation can break down when the phase is below background noise. In such cases Lg blockage and inefficient propagation zones are often mapped out by hand. With our approach, we attempt to visually simplify this information by imaging crustal structure anomalies that significantly diminish the amplitude of Lg. The visualization of such anomalies is achieved by defining a grid of cells that covers the entire region of interest. We trace Lg rays for each event/ station pair, which is simply the great circle path, and attribute to each cell a value equal to the maximum value of the Lg/P-coda amplitude ratio for all paths traversing that particular cell. The resulting map, from this empirical approach, is easily interpreted in terms of crustal structure and can successfully image small blockage features often missed by analysis of raypaths alone. This map can then be used to screen out events with blocked Lg prior to performing Q tomography, and to avoid using Lg-based methods of event identification for the CTBT in regions where they cannot work. For this study we applied our technique to one of the most tectonically complex regions on the earth. Nearly 9000 earthquake/station raypaths, traversing the vast region comprised of the Middle East, Mediterranean, Southern Europe and Northern Africa, have been analyzed. We measured the amplitude of Lg relative to the P-coda and mapped the lateral variation of Lg propagation efficiency. With the relatively dense coverage provided by the numerous crossing paths we are able to map out the pattern of crustal heterogeneity that gives rise to the observed character of Lg propagation. We observe that the propagation characteristics of Lg within the region of interest are very complicated but are readily correlated with the different tectonic environments within the region. For example, clear strong Lg arrivals are observed for paths crossing the stable continental interiors of Northern Africa and the Arabian Shield. In contrast, weakened to absent Lg is observed for paths crossing much of the Middle East, and Lg is absent for paths traversing the Mediterranean. Regions that block Lg transmission within the Middle East are very localized and include the Caspian Sea, the Iranian Plateau and the Red Sea. Resolution is variable throughout the region and strongly depends on the distribution of seismicity and recording stations. Lg propagation is best resolved within the Middle East where regions of crustal heterogeneity on the order of 100 km are imaged (e.g., South Caspian Sea and Red Sea). Crustal heterogeneity is resolvable but is poorest in seismically quiescent Northern Africa.

Pure and Applied Geophysics↗