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Agencies collaborate, develop a cyanobacteria assessment network

Cyanobacteria are a genetically diverse group of photosynthetic microorganisms that occupy a broad range of habitats on land and water all over the world. They release toxins that can cause lung and skin irritation, alter the taste and odor of potable water, and cause human and animal illness. Cyanobacteria blooms occur worldwide, and climate change may increase the frequency, duration, and extent of these bloom events. Rapid detection of potentially harmful blooms is essential to protect humans and animals from exposure. Information about potential for exposure, such as bloom duration, frequency, and extent, is especially critical for developing environmental management decisions during periods of limited resources and funding. The National Research Council (NRC) report Exposure Science in the 21st Century suggested that effectively assessing and mitigating exposures requires techniques for rapid measurement of a stressor, such as an algal bloom, across diverse geographic, temporal, and biologic scales (e.g., various bloom concentrations) and an enhanced infrastructure to address threats [ NRC , 2012]. The report specifically calls for approaches that use diverse information, such as satellite remote sensing, to identify and understand exposures that may pose a threat to ecosystems or human health. A collaborative effort integrates the work of the U.S. Environmental Protection Agency (EPA), NASA, the National Oceanic and Atmospheric Administration (NOAA), and the U.S. Geological Survey (USGS) to provide an approach for using satellite ocean color capabilities in U.S. fresh and brackish water quality management decisions. The overarching goal of this collaborative project is to detect and quantify cyanobacteria blooms using satellite data records in order to support the environmental management and public use of U.S. lakes and reservoirs. Satellite remote sensing tools may enable policy makers and environmental managers to assess the sustainability of watershed ecosystems and the services they provide, now and in the future. Satellite technology allows us to develop early-warning indicators of cyanobacteria blooms at the local scale while maintaining continuous national coverage.

Eos, Earth and Space Science News

Lithologic and hydrologic controls of mixed alluvial-bedrock channels in flood-prone fluvial systems: bankfull and macrochannels in the Llano River watershed, central Texas, USA

The rural and unregulated Llano River watershed located in central Texas, USA, has a highly variable flow regime and a wide range of instantaneous peak flows. Abrupt transitions in surface lithology exist along the main-stem channel course. Both of these characteristics afford an opportunity to examine hydrologic, lithologic, and sedimentary controls on downstream changes in channel morphology. Field surveys of channel topography and boundary composition are coupled with sediment analyses, hydraulic computations, flood-frequency analyses, and geographic information system mapping to discern controls on channel geometry (profile, pattern, and shape) and dimensions along the mixed alluvial-bedrock Llano River and key tributaries. Four categories of channel classification in a downstream direction include: (i) uppermost ephemeral reaches, (ii) straight or sinuous gravel-bed channels in Cretaceous carbonate sedimentary zones, (iii) straight or sinuous gravel-bed or bedrock channels in Paleozoic sedimentary zones, and (iv) straight, braided, or multithread mixed alluvial&ndash;bedrock channels with sandy beds in Precambrian igneous and metamorphic zones. Principal findings include: (i) a nearly linear channel profile attributed to resistant bedrock incision checkpoints; (ii) statistically significant correlations of both alluvial sinuosity and valley confinement to relatively high f (mean depth) hydraulic geometry values; (iii) relatively high b (width) hydraulic geometry values in partly confined settings with sinuous channels upstream from a prominent incision checkpoint; (iv) different functional flow categories including frequently occurring events (< 1.5-year return periods) that mobilize channel-bed material and less frequent events that determine bankfull channel (1.5- to 3-year return periods) and macrochannel (10- to 40-year return periods) dimensions; (v) macrochannels with high f values (most &le; 0.45) that develop at sites with unit stream power values in excess of 200 watts per square meter (W/m2); and (vi) downstream convergence of hydraulic geometry exponents for bankfull and macrochannels, explained by co-increases of flood magnitude and noncohesive sandy sediments that collectively minimize development of alluvial bankfull indicators. Collectively, these findings indicate that mixed alluvial&ndash;bedrock channels exhibit first-order lithologic controls (lithologic resistance and valley confinement) of channel geometry, second-order hydrologic (flow regime) control of channel dimensions, and third-order sedimentary controls that exert subsidiary influence on channel shape and bed configuration.

Texas

Hourly analyses of the large storms and atmospheric rivers that provide most of California's precipitation in only 10 to 100 hours per year

California is regularly impacted by floods and droughts, primarily as a result of too many or too few atmospheric rivers (ARs). This study analyzes a two-decade-long hourly precipitation dataset from 176 California weather stations and a 3-hourly AR chronology to report variations in rainfall events across California and their association with ARs. On average, 10-40 and 60-120 hours of rainfall in southern and northern California, respectively, are responsible for more than half of annual rainfall accumulations. Approximately 10-30% of annual precipitation at locations across the state is from only one large storm. On average, northern California receives 25-45 rainfall events annually (40-50% of which are AR-related). These events typically have longer durations and higher event-precipitation totals than those in southern California. Northern California also receives more AR landfalls with longer durations and stronger Integrated Vapor Transport (IVT). On average, ARs contribute 79%, 76%, and 68% of extreme-rainfall accumulations (i.e., top 5% events annually) in the north coast, northern Sierra, and Transverse Ranges of southern California, respectively. The San Francisco Bay Area terrain gap in the California Coast Range allows more AR water vapor to reach inland over the Delta and Sacramento Valley, and thus, influences precipitation in the Delta’s catchment. This is particularly important for extreme precipitation in the northern Sierra Nevada, including river basins above Oroville Dam and Shasta Dam. This study highlights differences between rainfall and AR characteristics in coastal versus inland northern California, differences that largely determine the regional geography of flood risks and water-reliability. These analyses support water resource, flood, levee, wetland, and ecosystem management within the catchment of the San Francisco estuary system by describing regional characteristics of ARs and their influence on rainfall on an hourly timescale.

California

Extreme floods, channel change, and riparian forests along ephemeral streams

The geomorphic effectiveness of extreme floods increases with aridity and decreasing watershed size. Therefore, in small dry watersheds extreme floods should control the age structure and spatial distribution of populations of disturbance-dependent riparian trees. We examined the influence of extreme floods on the bottomland morphology and forest of ephemeral streams in a semiarid region. Along six stream reaches on the Colorado Piedmont we examined channel changes by analyzing a rectified sequence of aerial photographs spanning 56 yr, and we investigated the spatial distribution of different-aged patches of forest by aging 189 randomly sampled cottonwood trees. Channel change in these ephemeral sand-bed streams is dominated by widening, which occurs over a span of hours during infrequent floods, and postflood narrowing, which occurs over decades between floods. Narrowing is accelerated where reliable moisture increases the density and growth rate of vegetation on the former bed. Reproduction of cottonwood trees has occurred mostly in former channel bed during periods of channel narrowing beginning after floods in 1935 and 1965 and continuing for as long as two decades. Thus cottonwood establishment is related to low flows at the time scale of a year, but to high flows at the time scale of decades. At sites that have not experienced major floods in the last 80 yr, little channel change has occurred, cottonwood reproduction has been limited, tree density has declined, and succession to grassland is occurring. Because channel change and tree reproduction in this region are driven by infrequent local events, channel width and tree age distributions vary greatly over time and among sites. For the same reason, riparian forests along these ephemeral streams can be as wide as forests along perennial rivers with much higher mean discharge.

Ecological Monographs

Effects of flow diversions on water and habitat quality: Examples from California's highly manipulated Sacramento–San Joaquin Delta

We use selected monitoring data to illustrate how localized water diversions from seasonal barriers, gate operations, and export pumps alter water quality across the Sacramento-San Joaquin Delta (California). Dynamics of water-quality variability are complex because the Delta is a mixing zone of water from the Sacramento and San Joaquin Rivers, agricultural return water, and the San Francisco Estuary. Each source has distinct water-quality characteristics, and the contribution of each source varies in response to natural hydrologic variability and water diversions. We use simulations with a tidal hydrodynamic model to reveal how three diversion events, as case studies, influence water quality through their alteration of Delta-wide water circulation patterns and flushing time. Reduction of export pumping decreases the proportion of Sacramento- to San Joaquin-derived fresh water in the central Delta, leading to rapid increases in salinity. Delta Cross Channel gate operations control salinity in the western Delta and alter the freshwater source distribution in the central Delta. Removal of the head of Old River barrier, in autumn, increases the flushing time of the Stockton Ship Channel from days to weeks, contributing to a depletion of dissolved oxygen. Each shift in water quality has implications either for habitat quality or municipal drinking water, illustrating the importance of a systems view to anticipate the suite of changes induced by flow manipulations, and to minimize the conflicts inherent in allocations of scarce resources to meet multiple objectives.

California

Effects of floods on fish assemblages in an intermittent prairie stream

1. Floods are major disturbances to stream ecosystems that can kill or displace organisms and modify habitats. Many studies have reported changes in fish assemblages after a single flood, but few studies have evaluated the importance of timing and intensity of floods on long-term fish assemblage dynamics. 2. We used a 10-year dataset to evaluate the effects of floods on fishes in Kings Creek, an intermittent prairie stream in north-eastern, Kansas, U.S.A. Samples were collected seasonally at two perennial headwater sites (1995-2005) and one perennial downstream flowing site (1997-2005) allowing us to evaluate the effects of floods at different locations within a watershed. In addition, four surveys during 2003 and 2004 sampled 3-5 km of stream between the long-term study sites to evaluate the use of intermittent reaches of this stream. 3. Because of higher discharge and bed scouring at the downstream site, we predicted that the fish assemblage would have lowered species richness and abundance following floods. In contrast, we expected increased species richness and abundance at headwater sites because floods increase stream connectivity and create the potential for colonisation from downstream reaches. 4. Akaike Information Criteria (AIC) was used to select among candidate regression models that predicted species richness and abundance based on Julian date, time since floods, season and physical habitat at each site. At the downstream site, AIC weightings suggested Julian date was the best predictor of fish assemblage structure, but no model explained >16% of the variation in species richness or community structure. Variation explained by Julian date was primarily attributed to a long-term pattern of declining abundance of common species. At the headwater sites, there was not a single candidate model selected to predict total species abundance and assemblage structure. AIC weightings suggested variation in assemblage structure was associated with either Julian date or local habitat characteristics. 5. Fishes rapidly colonised isolated or dry habitats following floods. This was evidenced by the occurrence of fishes in intermittent reaches and the positive association between maximum daily discharge and colonisation events at both headwater sites. 6. Our study suggests floods allow dispersal into intermittent habitats with little or no downstream displacement of fishes. Movement of fishes among habitats during flooding highlights the importance of maintaining connectivity of stream networks of low to medium order prairie streams. ?? 2006 The Authors.

Freshwater Biology

Status and trends of total nitrogen and total phosphorus concentrations, loads, and yields in streams of Mississippi, water years 2008–18

To assess the status and trends of conditions of surface waters throughout Mississippi, the U.S. Geological Survey, in cooperation with the Mississippi Department of Environmental Quality (MDEQ), summarized concentrations and estimated loads, yields, trends, and spatial and temporal patterns of total nitrogen (TN) and total phosphorus (TP) at 20 stream sites in MDEQ’s ambient water-quality monitoring network and 2 stream sites in the U.S. Geological Survey’s National Water-Quality Assessment Project’s monitoring network. Comparison of streamflow at the time of water-quality sample collection to flow-duration curves for each site showed that samples were relatively evenly spread over a wide range of flows, indicating that load estimations were representative of a wide range of flows. Relation of streamflow to concentrations of TN and TP varied among sites and land use. Sites with high agriculture land use in the drainage basin tended to have a positive correlation between streamflow and concentration, suggesting influence of event-driven nonpoint-source runoff. Sites near urban (developed) areas tended to have a negative correlation between streamflow and concentration, suggesting chronic point-source influences during low-flow conditions. Sites with high forest land use and lower agriculture and urban (developed) land use showed little to no association between streamflow and concentration. Seasonal distributions of concentrations of TN and TP also corresponded closely with variations in land use. Sites near urban (developed) land had the highest concentrations in late summer and fall, sites with a high percentage of agricultural land had the highest concentrations in the spring, and sites that were primarily forested or with little developed land did not exhibit substantial changes in concentration across seasons. Eight sites had statistical likelihoods for upward trends of TN loads, and seven sites had statistical likelihoods for downward trends. Trends in TN loads at six sites were considered “about as likely as not,” meaning that a site has an equal chance of having an upward or downward trend. Trend results of mean annual flow-normalized loads of TP for the period of analysis (2008–18) showed that 16 sites had upward trends, 3 sites had downward trends, and 2 sites were considered “about as likely as not.” Results from our study were compared to results from existing regional models to assess accuracy of predictions at a local scale. Comparisons of yields predicted from 2012 regional-scale SPAtially Referenced Regressions on Watershed attributes (SPARROW) to results from this study showed the 2012 SPARROW-predicted estimates varied in consistency with results from this study. The 2012 SPARROW-prediction model underestimated TN yields, more often and by a slightly larger degree, more than it overestimated TN yields. The 2012 SPARROW-predicted model tended to underestimate yields at study sites with higher yields. All four sites in the predominantly agricultural area of northwest Mississippi, locally known as the Mississippi Delta, were underestimated by 2012 SPARROW. For TP, yield comparisons at sites with lower yields were consistent, yields at sites with midrange yields tended to be overestimated by SPARROW, and yields at sites with high yields tended to be underestimated by SPARROW. TP yields at four sites in the Mississippi Delta were underestimated by the 2012 SPARROW-predicted model. Results of select sites from our study were also compared to other published load estimates from an earlier time period to evaluate possible trends. Comparison of TN yields at four sites and TP yields at three sites from the study-derived estimates to estimates made from data spanning 1993–2004 showed decreasing TN yields at all four sites and decreasing TP yields at two of three sites, with increasing yields of TP at the Yazoo River lower site. Also, a third comparison of the TN and TP yields of the Yazoo River lower site of this study to estimates made from data spanning 1996–97 showed decreasing TN yields but similar TP yields. This suggests that TN yields may have decreased over the last 20–30 years, but TP yields remain constant or are increasing.

Mississippi

Hydrological effects of the increased CO 2 and climate change in the Upper Mississippi River Basin using a modified SWAT

Increased atmospheric CO 2 concentration and climate change may significantly impact the hydrological and meteorological processes of a watershed system. Quantifying and understanding hydrological responses to elevated ambient CO 2 and climate change is, therefore, critical for formulating adaptive strategies for an appropriate management of water resources. In this study, the Soil and Water Assessment Tool (SWAT) model was applied to assess the effects of increased CO 2 concentration and climate change in the Upper Mississippi River Basin (UMRB). The standard SWAT model was modified to represent more mechanistic vegetation type specific responses of stomatal conductance reduction and leaf area increase to elevated CO 2 based on physiological studies. For estimating the historical impacts of increased CO 2 in the recent past decades, the incremental (i.e., dynamic) rises of CO 2 concentration at a monthly time-scale were also introduced into the model. Our study results indicated that about 1–4% of the streamflow in the UMRB during 1986 through 2008 could be attributed to the elevated CO 2 concentration. In addition to evaluating a range of future climate sensitivity scenarios, the climate projections by four General Circulation Models (GCMs) under different greenhouse gas emission scenarios were used to predict the hydrological effects in the late twenty-first century (2071–2100). Our simulations demonstrated that the water yield would increase in spring and substantially decrease in summer, while soil moisture would rise in spring and decline in summer. Such an uneven distribution of water with higher variability compared to the baseline level (1961–1990) may cause an increased risk of both flooding and drought events in the basin.

Mississippi River Basin

Nearshore subtidal community response during and after sediment disturbance associated with dam removal

Dam removal is used increasingly to restore aquatic ecosystems and remove unnecessary or high-risk infrastructure. As the number of removals increases, there is a growing understanding about the hydrologic, geomorphic, and ecological responses to these removals. Most dam removal studies, however, focus on river and watershed responses to dam removal. The removal of two dams on the Elwha River provided a unique opportunity to characterize the response of nearshore (coastal) ecosystems. We conducted SCUBA surveys between 2011 and 2022 to quantify trajectories of change in a nearshore ecosystem during and after dam removal. We focused on the degree to which the abundances of kelp, benthic invertebrates, and fish changed in response to patterns of sediment fluxes during and after dam removal. Our findings point to two pathways of response depending on the disturbance mechanism and species type. Sites with persistent sediment deposition were characterized by wholesale community changes that did not recover to a before dam removal condition. Instead, the sites were colonized by new species that were largely absent prior to dam removal. Sites that experienced high turbidity but lacked persistent seafloor deposition were primarily characterized by a reduction in the abundance of kelp and other algae during dam removal and a rapid recovery after sediment flux to the nearshore declined. Dam removal influences on invertebrates and fish at these sites were more variable, benefiting some species and disadvantaging others. In addition to dam removal, sea star wasting syndrome and a marine heatwave exerted distinct controls on subtidal communities during the same period. The loss of the predatory sea star Pycnopodia helianthoides was associated with gains in some of its prey species, and kelp community changes reflected regional trends in ocean temperature and kelp abundance. The results presented here have important implications for understanding the response of marine ecosystems to future dam removals and similar sediment perturbation events.

Washington

Simulating present and future groundwater/surface-water interactions and stream temperatures in Beaver Creek, Kenai Peninsula, Alaska

In many places, coldwater ecosystems are facing increasing pressure from anthropogenic warming. This study examined stream temperatures and the water balance in the Beaver Creek watershed on the Kenai Peninsula in south-central Alaska—an area that is experiencing rapid warming. Low-gradient streams near the Kenai coast provide important spawning and rearing habitat for salmon but may be especially vulnerable to rising temperatures, because of long residence times, inflows from abundant riparian wetlands, and reliance on groundwater discharge that may also warm, or decrease in volume with rising evapotranspiration. In recent decades, observed maximum 7-day temperatures have consistently exceeded statistical (regression-based) projections. Here we simulate total streamflows and temperatures with a physics-based model that links the Soil Water Balance, MODFLOW 6 and SNTEMP simulation codes on a 7-day timestep. The model is based on existing data and groundwater levels, instream flows, and stream temperatures collected during 2019–23. Future climate scenarios were developed for 2023–50 from downscaled climate projections. Results indicate that groundwater discharge is about 64 percent of the total streamflow during the months of May through September. Total streamflow and groundwater discharge are expected to remain similar to current conditions through 2050. Stream temperatures are expected to rise; by midcentury, near the Beaver Creek mouth the model predicts 34 to 63 additional days per year with average weekly temperatures above 13 degrees Celsius, 14 to 81 additional days with average weekly temperatures above 15 degrees Celsius, and routine exceedances of 20 degrees Celsius during the warmest periods. Projected stream temperatures vary spatially. Areas of high groundwater inflows in the lower main stem and some tributaries may be most resilient to warming air temperatures during dry conditions. During storm events, groundwater-dominated tributaries may have the coolest stream temperatures.

Alaska

Managed aquifer recharge in snow-fed river basins: What, why and how?

What does climate change mean for snow-fed river basins? Climate change poses unique challenges in snow-fed river basins across the western United States because the majority of water supply originates as snow (Dettinger, Udall, & Georgakakos, 2015). In the Sierra Nevada, recent observations include changes in snow accumulation and snowmelt, and shifts in peak streamflow timing (Barnhart et al., 2016; Hatchett et al., 2017; Kim & Jain, 2010; McCabe, Wolock, & Valentin, 2018; Mote, Li, Lettenmaier, Xiao, & Engel, 2018). Such changes upstream alter surface water deliveries downstream, as well as groundwater recharge utilized as both primary and supplemental water supply (Godsey et al., 2014; Harpold, 2016; Jasechko et al., 2014). basin where snowmelt runoff produces substantial water supply to meet diverse agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the Carson Valley, a rich agricultural region (40,000 acres) that grows primarily alfalfa hay. The majority of irrigators rely on surface water delivered through a network of earthen ditches constructed in the mid-19th and early 20th centuries. Flow through these earthen networks and the practice of flood irrigation contribute significantly to groundwater recharge. Because no upstream surface water reservoirs exist, snowpack that accumulates through winter and melts slowly through spring has acted as a “natural” reservoir, providing ample supply through the summer irrigati agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the season. Some irrigators have permitted access to supplemental groundwater that is useful during periods of drought for augmenting shortfalls in surface water delivery. Groundwater is the primary source of municipal and industrial water supply for surrounding communities (e.g., Carson City, Minden, Gardnerville, Dayton). Across the basin, water use is highly regulated through federal, tribal, state and local water-sharing agreements based on prior appropriation doctrine (Wilds, 2014). Carson River surface water allocations follow the Alpine Decree, initiated by the United States Department of Interior in 1925 and signed into law in 1980, following 55 years of litigation, to adjudicate surface water rights to individual parties (NDWP, 1999). The Alpine Decree acknowledges return flows to lower river segments, and thus each river segment is distributed autonomously. This means that the most junior water right on an upper segment can be fulfilled before considering the most senior water right on a lower segment. Ultimately, the ruling is at the discretion of the Federal Water Master to satisfy the needs of each water right Downstream of Carson Valley, surface water flows are stored in Lahontan Reservoir, the nation’s first desert reclamation project (est. 1906), where releases are managed to meet the Newland’s Project irrigation water demand and for environmental use on the Stillwater National Wildlife Refuge. Flows from the Carson River are supplemented through diversions from the Truckee River via the Truckee Canal, resulting in a trans-basin water supply system. How is the Water for the Seasons research program informing snow-fed river basin communities? In the Truckee-Carson River System, researchers and local water managers are working together to assess climate change impacts to water supply and explore how model simulations can produce useful information to support local climate adaptation. Twelve key water managers represent agricultural, environmental, urban and regulatory water-use communities, and bring to the table diverse input and perspectives on how to adapt to climate change. Hydrologists use this input to craft scenarios and simulations that meet the information needs of local water managers. Biannual workshops provide an opportunity for information exchange, where researchers and key water managers generate new knowledge of river system function. That is, researchers share results of models that examine the physical potential, and managers validate the on-the-ground potential, further informing the research process. Coincident to this research program, the region faced a prolonged drought period (2012-2016) with historically low snowpack, followed by a historic wet year (2017) that brought winter and spring flooding as a result of atmospheric river storm events (Sterle et al., 2019). For the Carson River, an important observation made by managers was that peak streamflow that had traditionally coincided with peak irrigation demands, had shifted to earlier in the spring, with summer baseflow also decreasing (Sterle & Singletary, 2017). Managers shared with researchers concerns over potential future impacts that changing snowpack will have on surface water deliveries and reliance on groundwater, as the region’s population and economy continue to grow. During workshops that occurred over this period, local water managers and researchers discussed ways to evaluate water distribution and use that honors the existing legal framework and accounts for changing snowpack regimes (amount, rain versus snow, timing). In response to managers growing interest, researchers introduced the concept of managed aquifer recharge as one potential strategy to adapt and enhance regional water sustainability. What is managed aquifer recharge? Simply stated, managed aquifer recharge is the intentional recharge of structures to spread water over agricultural lands, allowing water to naturally infiltrate into the groundwater system (Bouwer, 1999; Niswonger et al., 2017). The latter may occur during the irrigation season by applying excess water, or during the nonirrigation season when evapotranspiration losses are low. Figure 2 illustrates managed aquifer recharge in a snow-fed river basin, where streamflow generated from snowmelt runoff is diverted to agricultural lands to recharge the aquifer. Such flood irrigation practices, including water delivery through earthen ditch networks, provide incidental but significant aquifer recharge through seepage and deep drainage beneath fields (Niswonger, Allander, & Jeton, 2014). The effects of managed aquifer recharge can vary depending on the location and intensity of practice. For example, implementing managed aquifer recharge water into the groundwater system (Dillon, 2009). This differs from the incidental recharge that may occur as part of normal irrigation practices. Managed recharge may occur by injection into the aquifer through existingwells, or by using existing conveyance adjacent to/along the river’s floodplain has the potential to enhance late-season instream flows due to increased return flows, resulting in greater downstream deliveries as well as improving ecological conditions (Niswonger et al., 2017). Implementing managed aquifer recharge away from the river’s floodplain has the potential to enhance groundwater supply which is increasingly relied upon during surface water shortage (Green et al., 2011), by storing water in available aquifer space in the deep aquifer. At the basin scale, managed aquifer recharge may lead to regional groundwater sustainability. Is the Carson River Basin a candidate for managed aquifer recharge? The physical limitations to implementing managed aquifer recharge in the Carson River Basin hinges on three key factors. The first factor relates to the physical connectivity between rivers and streams, and the irrigation delivery network of canals and ditches that divert water to agricultural lands (Niswonger et al., 2017). In the Carson River Basin the mechanisms for getting water to fields is already in place. Thus, intentionally routing high flows that occur in wet years through this system during the nonirrigation season would mimic what occurs naturally during the irrigation season. The second factor relates to the occurrence of atmospheric river storm events that deliver large amounts of precipitation to the region, much greater than average (Dettinger et al., 2015). With increased frequency and intensity projected under a warmer climate, such events have the potential to produce excess water over short periods of time that could be stored through mechanisms such as managed aquifer recharge (Niswonger et al., 2017). The third factor relates to the change in snowpack accumulation and shifts in snowmelt timing observed elsewhere in the Sierra Nevada (e.g., Godsey et al., 2014; Mote et al., 2018). Having a mechanism in place to maximize use of earlier snowmelt and shifts in streamflow timing could be advantageous and enhance regional groundwater sustainability. As part of the Water for the Seasons study, a hypothetical scenario was developed to determine the feasibility of managed aquifer recharge in the Carson River Basin, assuming no legal constraints. During “wet” or above-average water years, irrigators in the Upper Carson Valley would divert high flows and spread water over agricultural lands during the nonirrigation season. Assuming flows are abundant and “early,” diversions would begin prior to the growing season, when water would otherwise flow downstream to the Lahontan Reservoir. During “dry” years or drought periods, when surface water availability is less, irrigators in the Upper Carson Valley could augment surface water shortages with groundwater, allowing available surface water flows to flow downstream. Researchers hypothesize the amount of water has the potential to boost baseflow to support environmental instream flows, for example. What concerns have local water managers expressed? The hypothetical managed aquifer recharge scenario was presented to water managers in a workshop setting. Presentations included an overview of the hydrologic and operations modeling tools used to evaluate managed aquifer recharge by simulating the timing and distribution of water in the upper watershed. Specifically, in the Upper Carson Valley, a hydrologic model (GSFLOW) simulates streamflow driven by snowmelt, and surface and groundwater interactions, while a river basin operations model (MODSIM) allocates water according to the prior appropriation doctrine in the basin (see Figure 1) (Morway, Niswonger, & Triana, 2016; Niswonger et al., 2017). Integrating these two modeling tools advances the evaluation of climate impacts on water availability in agricultural communities and the resulting impacts of alternative management strategies (Morway et al., 2016). When asked about the viability of managed aquifer recharge, the perspectives of 11 managers varied (Figure 3). Regardless of rating, all managers questioned, “How would thisreally work?” Several managers questioned whether models could simulate the connectivity between surface and groundwater to accurately quantify changes to instream flow. Others raised concerns that managed aquifer recharge violates the Alpine Decree and Nevada Water Law. Still others requested researchers consider alternatives that could work within the confines of current (2019) water law. Managers posed specific questions that should be considered when evaluating the potential for managed aquifer recharge. For example: What triggers implementation of managed aquifer recharge?How “high” or “low” must annual flows be to initiate managed aquifer recharge? When in the water year is this determined? Where exactly in the Carson Valley is managed aquiferre charge possible? For example, what areas away from the floodplain could ensure long-term storage? Can model simulations quantify potential benefits and consequences system-wide?Would this information support decision-making, such as permitting of additional supplemental groundwater rights? How are researchers going to address managers’ research questions? Managers’ perspectives help to validate the on-the-ground potential of particular strategies and further refine alternative management scenarios. For example, understanding that managers are concerned with oversaturated fields helps researchers to define conditions in the model, such as what defines a wet versus “too” wet type of year and where to focus irrigation for managed aquifer recharge. Incorporating these nuances provides more accurate quantification of the potential benefits and consequences for users across the basin. Modeling is underway to simulate managed aquifer recharge scenarios and explore basin-wide implications. Researchers and local water managers will convene to collaboratively review results and further assess whether this or other strategies could work under the confines of existing water law. Subsequent fact sheets will present these findings.

Nevada

Comparison of storm runoff models for a small watershed in an urban metropolitan area, Albuquerque, New Mexico

In order to comply with a current U.S. Environmental Protection Agency watershed-based National Pollutant Discharge Elimination System permit, the City of Albuquerque required a better understanding of the rainfall-runoff processes in its small urban watersheds. That requirement prompted the initiation of the assessment of three existing watershed models that were developed to simulate those processes. Three existing rainfall-runoff modeling software packages—Hydrologic Engineering Center Hydrologic Modeling System (HEC-HMS) (using two sets of methods), Program for Predicting Polluting Particle Passage Through Pits, Puddles, and Ponds (P8), and Arid-Lands Hydrologic Model (AHYMO)—were compared to determine which provided the best balance of accuracy and usability for simulating storm runoff in small watersheds in the urbanized area of Albuquerque, New Mexico. Additionally, results of this study could help inform model users who have interest in simulating storm runoff in similar urban areas throughout the United States. Each model was used to simulate storm runoff in the Hahn Arroyo watershed, an urbanized watershed with concrete-lined arroyo channels in the northeastern quadrant of Albuquerque that exhibits flashy, monsoonal-driven storm runoff. Model results were compared to observed discharge data, according to literature-recommended performance measures and performance evaluation criteria. The HEC-HMS model using the Soil Conservation Service (SCS) curve number (CN) and SCS unit hydrograph methods ranked the highest when averaging the individual performance measures (Nash-Sutcliffe Efficiency, percent bias, and coefficient of determination) rankings together across the hourly calibration and validation periods, followed by P8, which was tied with the HEC-HMS initial and constant approach. For daily rankings using the same rank-averaging approach, the HEC-HMS CN-based model and P8 were tied for the highest ranking, followed by the HEC-HMS initial and constant approach. Alternatively, rating performance using validation period results as an indication of the expected confidence in forecasted results for future conditions, the P8 model performed best for both hourly and daily time-steps, followed by the HEC-HMS CN-based model and the HEC-HMS initial and constant-based model. However, based on the literature performance evaluation criteria, the HEC-HMS and P8 models overall had marginally satisfactory performance only for operation at the daily time-step. Direct comparison of the HEC-HMS and P8 models to the AHYMO is difficult, given the different performance assessment criteria used to assess these models separately in this study, as recommended by the literature. The AHYMO results generally lacked precision, given the wide range in the performance assessment values across events in percent error in peak discharge, difference in timing of peak discharge, percent error in total runoff volume, and difference in duration of event relative to observed data. For some events, however, the AHYMO results were fairly accurate, and AHYMO was likely a good predictor of the timing of storm runoff and the shape of the hydrograph. This study did not assess the results for all potential applications of the models in the Albuquerque urbanized area. Further study may be required to assess the model performance capabilities in other modeling applications.

New Mexico

Hydrogeology and groundwater quality in the San Agustin Basin, New Mexico, 1975–2019

This report describes the findings of a U.S. Geological Survey study, completed in cooperation with the Bureau of Land Management, focused on better understanding the present-day (1975–2019) hydrogeology and groundwater quality of the San Agustin Basin in west-central New Mexico to support sustainable groundwater resource management. The basin hosts a relatively undeveloped basin-fill and alluvium aquifer system and is topographically divided into east and west subbasins by the McClure Hills. Groundwater chemistry and groundwater elevation data were compiled, collected, and interpreted in the context of groundwater flow and quality. The analyses presented in this report consider groundwater chemistry data collected within the last decade (2010–19) and groundwater elevation data collected from 1975 through 2019 to provide insight into present-day conditions. Groundwater elevations show that groundwater typically moves from the highlands to the lowlands, with a prominent east to west regional trend. Groundwater elevations were lowest in the southwestern portion of the west subbasin, where estimated flow directions suggest underflow through the local highlands into the northern East Fork Gila River watershed, which is further supported by historical groundwater elevation data from the northern East Fork Gila River watershed. Gradual groundwater elevation gradients (about 2 feet per mile) near the east and west subbasin divide suggest that groundwater slowly flows from the east subbasin to the west subbasin. Quantitative analyses of groundwater chemistry data show that groundwater in both subbasins has similar chemical characteristics. A systematic east to west groundwater evolution in water chemistry was not observed despite evidenced subbasin connectivity. The absence of this pattern suggests that groundwater mixing is regionally prevalent, sediment reactivity is low and variable, and (or) recharge conditions are comparable in both subbasins. Groundwater chemistry was generally independent of aquifer type, suggesting that the aquifers are hydrologically well connected. Corrected carbon-14 groundwater age estimates in the basin ranged from 232 to 13,916 years before present with a median of 5,409 years. A wide range of groundwater ages is therefore present in the basin, with waters commonly being thousands of years old, thereby supporting generally slow regional groundwater movement. A component of relatively young groundwater, for which estimated ages could not be accurately computed, is also present in the basin, and it may commonly mix with older waters. The spatial distribution of categorical and quantitative groundwater ages indicates that most recharge likely occurs in the highlands through mountain-block recharge and as focused recharge within arroyos, although evidence of modern (1953 and after) groundwater was minimal at sampled sites. Median annual gradients (groundwater elevation change over time) indicate that most groundwater elevations in the lowlands changed little (−0.2 to 0.2 foot per year) from 1975 through 2019. Groundwater elevations in the highlands varied more annually, which is likely due to recharge from precipitation events. These more variable groundwater elevations in the highlands compared with the lowlands, along with groundwater ages, provide further evidence that most groundwater recharge takes place in the highlands, with minimal recharge in the lowlands. Median groundwater elevation change for all sites was −0.05 foot per year. Temporal consistency of lowland groundwater elevations suggests that regional groundwater dynamics have been more or less stable through time under current climate and development conditions, although median annual gradients indicate that groundwater elevations may have slightly declined on average between 1975 and 2019.

New Mexico

Maintaining and restoring sustainable ecosystems in southern Nevada

Managers in southern Nevada are challenge with determining appropriate goals and objectives and developing viable approaches for maintaining and restoring sustainable ecosystems in a time of rapid socio-ecological and environmental change. Sustainable or "healthy" ecosystems supply clean air, water and habitat for a diverse array of plants and animals. As described in Chapter 1, sustainable ecosystems retain characteristic processes like hydrological flux and storage, geomorphic processes, biogeochemical cycling and storage, biological activity and productivity, and population regeneration and reproduction over the normal cycle of disturbance events (modified from Chapin and others 1996 and Christensen and others 1996). Ecological restoration of stressed or disturbed ecosystems in an integral part of managing for sustainable ecosystems. The Society of Ecological Restoration International (SERI) defines ecological restoration as the process of assisting the recovery of an ecosystem that has been degraded, damaged, or destroyed (SERI 2004). Many of the southern Nevada's ecosystems are being subjected to anthropogenic stressors that span global, regional, and local scales (Chapter 2)., and are crossing ecological thresholds to new alternative states (Chapter 4 and Chapter 5). These alternative states often represent novel communities with disturbance regimes that differ significantly from historic conditions. Past management and restoration goals often focused on returning ecosystems to pre-disturbance conditions (Harris and others 2006). This approach assumes stable or equilibrium conditions and ignores changes in ecosystems processes due to land uses, increases in CO 2 concentrations, and climate change. A more realistic approach is to base management and restoration goals on the current potential of an ecosystem to support a given set of ecological conditions, and on the likelihood of future change due to warming climate (Harris and others 2006). This approach requires understanding ecosystem resilience to anthropogenic disturbance and climate change, the alternative states that exist for ecosystems, and the factors that result in threshold crossing (Bestelmeyer and others 2009; Hobbs and Harris 2001; Stingham and others 2003; Whisemnant 1999). It also requires the ability to predict how climate is likely to influence ecosystems in the future (Harris and others 2006). This chapter addresses the restoration aspects of Sub-goal 1.3 in the SNAP Science Research Strategy which is to restore and sustain proper function of southern Nevada's watersheds and landscapes (able 1.3; Turner and others 2009). The effects of global, regional and local stresses on southern Nevada ecosystems are presented in Chapter 2. Here, we discuss appropriate objectives and develop guidelines for maintaining and restoring southern Nevada ecosystems. We then discuss the differences in ecological resilience to stress and disturbance and resistance to invasive species in southern Nevada ecosystems and describe restoration and management approaches for the different ecosystem types. We conclude with knowledge gaps and management implications.

Nevada

Hydrologic characteristics and water quality of headwater streams and wetlands at the Allegheny Portage Railroad National Historic Site, Summit area, Blair and Cambria Counties, Pennsylvania, 2014–16

The Allegheny Portage Railroad National Historic Site (ALPO) in Blair and Cambria Counties, Pennsylvania, protects historic features of the first railroad portage over the Allegheny Front and the first railroad tunnel in the United States. This report, which was completed by the U.S. Geological Survey in cooperation with the National Park Service, summarizes water resources in the headwaters of the Blair Gap Run and Bradley Run watersheds at the ALPO Summit area during 2014–16. These new baseline data fill an existing gap in knowledge and may be helpful to evaluate potential changes in the hydrologic characteristics of streams and associated wetlands at the Summit area. Results of synoptic water-quality surveys and continuous stage records at two streamgages near the headwaters of Blair Gap Run and Bradley Run indicate that the headwater streams of the ALPO Summit area are perennial but have different water-quality characteristics. The water sampled in the headwaters of Blair Gap Run had pH that ranged from acidic to near neutral, combined with elevated concentrations of dissolved solids, mainly sulfate, chloride, and sodium. These characteristics can be attributed to drainage from legacy coal mines and runoff from nearby roads treated with deicing salt. More than once during the study, the chloride and associated contaminant concentrations in tributaries of Blair Gap Run exceeded chronic thresholds for protection of freshwater aquatic organisms. In contrast, the water quality at tributaries of Bradley Run in the Summit area was characterized by near-neutral pH and relatively low concentrations of dissolved constituents, which met criteria for protection of freshwater aquatic life. By comparison, the deep groundwater discharged as abandoned mine drainage to Sugar Run from the Argyle Stone Bridge Mine, which underlies the Summit area, had acidic pH and elevated concentrations of sulfate and metals, which exceeded chronic and acute thresholds for aquatic life. Data on shallow groundwater levels in piezometers at two wetlands in the Summit area, which were monitored during spring through fall of 2016, indicate downward hydraulic gradients (higher water level in shallow piezometer than in deeper piezometer) and potential for local groundwater recharge during rainfall events, particularly in the summer and fall seasons. The wetlands in the upland area (wetland 3, at altitude 2,370 feet NAVD 88) near the divide between Blair Gap Run and Bradley Run between the Lemon House and Picnic Area, exhibited a consistent downward gradient from spring through fall of 2016. The associated surface seepage at wetland 3 dried up in the summer of 2016. In contrast, the wetlands in the adjoining valley (wetland 6, at altitude 2,198 feet NAVD 88) in the northwestern Summit area exhibited upward hydraulic gradients in the spring and produced continuous seepage. Despite downward gradients during summer and fall, the seepage associated with wetland 6 sustained perennial conditions in the Bradley Run drainage through the summer of 2016. Differences in groundwater altitudes and associated water quality among the surface water, shallow groundwater, and deep groundwater in the Summit area imply that the surface water and shallow groundwater in the Summit area could recharge the groundwater of the underlying coal mines. Seasonally upward and downward vertical gradients in the near-surface soil and bedrock at wetland 6, and unimpaired water quality in the Bradley Run headwaters, are consistent with a perched water table and local hydrology that is influenced by local recharge. Persistent downward gradients and impaired water quality at wetland 3 and the adjacent headwaters seeps and tributaries of Blair Gap Run could be attributed to subsidence and drainage from shallow coalbeds (Upper Freeport, seam E) and associated mine workings in that area; however, the underlying deep coal mine pool (Lower Kittanning, seam B), which is hundreds of feet below the surface, does not appear to affect the hydrologic characteristics of the headwater streams and wetlands in the Summit area.

Pennsylvania

Assessment of fecal contamination sources to Alley Creek, Queens County, New York, August 2020–June 2021

Alley Creek, a tributary to Little Neck Bay in Queens County, New York, has been designated by the New York State Department of Environmental Conservation as impaired (Class I) for fecal coliform because of pollution from combined sewer overflow, including stormwater runoff. The U.S. Geological Survey, in cooperation with the New York City Department of Environmental Protection, conducted a 1-year study from August 2020 to June 2021 using microbial source tracking (MST) methods to assess potential host sources of fecal contamination (for example, human, canine, and waterfowl) from the following: three outfall sites, TI–025, TI–008, and TI–024; an artesian well (Q277) adjacent to Alley Creek; and natural waters within the Alley Creek watershed and Little Neck Bay. In addition to analyzing for MST markers, field measurements such as water temperature and specific conductance, samples for total suspended solids, and fecal indicator bacteria (FIB; enterococci and fecal coliform) were collected. Pharmaceutical compounds were also collected for analysis, and the results of sampling were compared spatially and temporally to help support management decisions related to mitigation of fecal sources to Alley Creek. Factors that could affect concentrations, including tidal conditions, seasonality, and weather conditions, also were assessed. A sediment resuspension laboratory experiment was designed to replicate tidal activity in Alley Creek using sediment collected in the sewers and on the shoreline, as well as water collected from Oakland Lake. These sediment samples were assessed to understand the relation between sediment resuspension and FIB in the water column. The human MST markers used for this study, Bacteroides HF183/BacR287, and crAssphage CPQ_056 and CPQ_064, were detected in most samples (27 of 28) collected at the three outfall sites along Alley Creek, whereas the canine marker BacCan was less prevalent (20 of 28 samples) but exhibited a pattern of relative concentrations similar to the human markers. The waterfowl MST GFD marker was detected in 7 of 28 samples collected at the three outfall sites. Human MST markers were not detected at Oakland Lake (which drains through a combined sewer line to Alley Creek at TI–008), indicating minimal or nonexistent influence of sewage contamination in the lake. Groundwater samples collected from Q277 did not contain any MST markers, and concentrations of fecal coliform were less than 10 colony forming units per 100 milliliters. Although FIB did not correlate well with total suspended solids for individual sample sets, samples collected following precipitation and high-turbidity events were typically found to have higher concentrations of FIB than dry-weather samples. Results from the pharmaceutical compounds analysis provided additional evidence for determining known and suspected human sources when coupled with MST markers. Together, the MST, pharmaceutical, and FIB data generated by this study, along with supplementary data such as locations of point sources, locations of wildlife populations, and tidal exchange data, may provide reliable information on source identification and transport mechanisms of fecal contamination to Alley Creek.

New York

Water-quality trends for a stream draining the Southern Anthracite Field, Pennsylvania

Stream flow, chemical and biological data for the northern part of Swatara Creek, which drains a 112 km 2 area in the Southern Anthracite Field of eastern Pennsylvania, indicate progressive improvement in water quality since 1959, after which most mines in the watershed had been flooded. Drainage from the flooded mines contributes substantially to base flow in Swatara Creek. Beginning in 1995, a variety of treatment systems and surface reclamation were implemented at some of the abandoned mines. At Ravine, Pa., immediately downstream of the mined area, median SO 4 concentration declined from about 150 mg l −1 in 1959 to 75 mg l −1 in 1999 while pH increased from acidic to near-neutral values (medians: c. pH 4 before 1975; c. pH 6 after 1975). Fish populations rebounded from non-existent during 1959–1990 to 21 species identified in 1999. Nevertheless, recent monitoring indicates (1) episodic acidification and elevated concentrations and transport of Fe, Al, Mn, and trace metals during storm flow; (2) elevated concentrations of Fe, Mn, Co, Cu, Pb, Ni, and Zn in streambed sediments relative to unmined areas and to toxicity guidelines for aquatic invertebrates and fish; and (3) elevated concentrations of metals in fish tissue, notably Zn. The metals are ubiquitous in the fine fraction (<0.063 mm) of bed sediment in mining-affected tributaries and the main stem of Swatara Creek. As a result of scour and transport of streambed deposits, concentrations of suspended solids and total metals in the water column are correlated, and those for storm flow typically exceed base flow. Nevertheless, the metals concentrations are poorly correlated with stream flow because concentrations of suspended solids and total metals typically peak prior to peak stream stage. In contrast, SO 4 , specific conductance and pH are inversely correlated with stream flow as a result of dilution of poorly buffered stream water with weakly acidic storm runoff derived mainly from low-pH rainfall. Declines in pH to values approaching 5.0 during storm flow events or declines in redox potential during burial of sediment could result in the remobilization of metals associated with suspended solids and streambed deposits.

Pennsylvania

A data exchange standard for wadeable stream habitat monitoring data

Data from wadeable streams collected by monitoring programs are used to assess watershed condition status and trends. Federally managed programs collect a suite of similar habitat measurements using compatible methods and produce individual program datasets for their prescribed geographic and temporal range. We identified four programs that produce similar data: the Bureau of Land Management Assessment, Inventory, and Monitoring lotic division, the U.S. Environmental Protection Agency National Aquatic Resource Surveys National Rivers and Streams Assessment survey section, the Federal interagency Aquatic and Riparian Effectiveness Monitoring Program, and the PacFish/InFish Biological Opinion Monitoring Program. Their datasets answer agency-specific management questions and fulfill reporting requirements, but the datasets are not released in full, or at all, and in some cases, there was no method to integrate data from the four programs to provide data at a larger spatial scale. The Pacific Northwest Aquatic Monitoring Partnership (PNAMP) led a working group of experts from the four monitoring programs to determine data compatibility, develop a Stream Habitat Metrics Integration (SHMI) data exchange standard, and integrate compatible wadeable stream data. The resulting SHMI data exchange standard contains a data mapping file used to transform data from the source program data to a conformed format based on a controlled vocabulary. After extensive discussions assessing and comparing program collection and analyses methods, the working group found 26 stream habitat metrics to be sufficiently comparable to be integrated into a meaningful dataset. Furthermore, a subset of PIBO MP data previously available only by request and AREMP data available only as a proprietary ESRI ArcGIS geodatabase were made publicly available in non-proprietary formats via the integrated SHMI dataset. A selection of data from the four programs determined to be compatible among 14 datasets were filtered, transformed, standardized, and combined using R code to create the integrated SHMI dataset containing about 12,000 locations, 19,000 events, and 200,000 measurements from 2000 to 2022. This report describes the SHMI data exchange standard and its development, the metric compatibility assessment, and the data integration process, so that others may reuse the SHMI data exchange standard and its components as well as the data integration processes.

Techniques and Methods