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U.S. Geological Survey science for the Wyoming Landscape Conservation Initiative: 2011 annual report

This is the fourth report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual work activities. In FY2011, there were 37 ongoing, completed, or new projects conducted under the five major multi-disciplinary science and technical-assistance activities: (1) Baseline Synthesis, (2) Targeted Monitoring and Research, (3) Data and Information Management, (4) Integration and Coordination, and (5) Decisionmaking and Evaluation. The four new work activities were (1) development of the Western Energy Citation Clearinghouse, a Web-based energy-resource database of references for literature and on-line resources focused on energy development and its effects on natural resources; (2) a study to support the Sublette County Conservation District in ascertaining potential water-quality impacts to the New Fork River from energy development in the Pinedale Anticline Project Area; (3) a study to test the efficacy of blending high-frequency temporal data provided by Moderate Resolution Imaging Spectroradiometer (MODIS) sensors and high-resolution Landsat data for providing the fine-resolution data required to evaluate habitat responses to management activities at the landscape level; and (4) a study to examine the seasonal water chemistry of Muddy Creek, including documenting salinity patterns and providing a baseline for assessing potential effects of energy and other development on water quality in the Muddy Creek watershed. Two work activities were completed in FY2011: (1) the assessment of rancher perceptions of energy development in Southwest Wyoming and (2) mapping aspen stands and conifer encroachment using classification and regression tree (CART) analysis for effectiveness monitoring. The USGS continued to compile data, develop geospatial products, and upgrade Web-based products in support of both individual and overall WLCI efforts, including (1) ranking and prioritizing proposed conservation projects, (2) developing the WLCI integrated assessment, (3) developing the WLCI 5-year Conservation Action Plan, and (4) continuing to upgrade the content and improve the functionality of the WLCI Web site. For the WLCI FY2012 annual report, a decision was made to greatly reduce the overall length of the annual report, which will be accomplished by simplifying the report format and focusing on the take-home messages of each work activity for WLCI partners.

Wyoming↗

Section 3. The SPARROW Surface Water-Quality Model—Theory, application and user documentation

SPARROW (SPAtially Referenced Regressions On Watershed attributes) is a watershed modeling technique for relating water-quality measurements made at a network of monitoring stations to attributes of the watersheds containing the stations. The core of the model consists of a nonlinear regression equation describing the non-conservative transport of contaminants from point and diffuse sources on land to rivers and through the stream and river network. The model predicts contaminant flux, concentration, and yield in streams and has been used to evaluate alternative hypotheses about the important contaminant sources and watershed properties that control transport over large spatial scales. This report provides documentation for the SPARROW modeling technique and computer software to guide users in constructing and applying basic SPARROW models. The documentation gives details of the SPARROW software, including the input data and installation requirements, and guidance in the specification, calibration, and application of basic SPARROW models, as well as descriptions of the model output and its interpretation. The documentation is intended for both researchers and water-resource managers with interest in using the results of existing models and developing and applying new SPARROW models. The documentation of the model is presented in two parts. Part 1 provides a theoretical and practical introduction to SPARROW modeling techniques, which includes a discussion of the objectives, conceptual attributes, and model infrastructure of SPARROW. Part 1 also includes background on the commonly used model specifications and the methods for estimating and evaluating parameters, evaluating model fit, and generating water-quality predictions and measures of uncertainty. Part 2 provides a user's guide to SPARROW, which includes a discussion of the software architecture and details of the model input requirements and output files, graphs, and maps. The text documentation and computer software are available on the Web at http://usgs.er.gov/sparrow/sparrow-mod.html .

Techniques and Methods↗

Evaluation of freshwater mussel relocation as a conservation and management strategy

The relocation of unionacean mussels is commonly used as a conservation and management tool in large rivers and streams. Relocation has been used to recolonize areas where mussel populations have been eliminated by prior pollution events, to remove mussels from construction zones and to re-establish populations of endangered species. More recently, relocation has been used to protect native freshwater mussels from colonization by the exotic zebra mussel Dreissena polymorpha. We conducted a literature review of mussel relocations and evaluated their relative success as a conservation and management strategy. We found that 43% of all relocations were conducted because of construction projects that were forced to comply with the Endangered Species Act 1973 and that only 16% were monitored for five or more consecutive years. Most (43%) relocation projects were conducted from July to September, presumably a period when reproductive stress is relatively low for most species and the metabolic rate is sufficient for reburrowing in the substrate. The mortality of relocated mussels was unreported in 27% of projects; reported mortality varied widely among projects and species and was difficult to assess. The mean mortality of relocated mussels was 49% based on an average recovery rate of 43%. There is little guidance on the methods for relocation or for monitoring the subsequent long-term status of relocated mussels. Based on this evaluation, research is needed to develop criteria for selecting a suitable relocation site and to establish appropriate methods and guidelines for conducting relocation projects.

Regulated Rivers: Research & Management↗

Agri-tourism and rural outdoor recreation in the US: A framework for understanding economic and employment dynamics

Agri-tourism and rural outdoor recreation are positioned at an important intersection between agricultural, natural resource, economic development and rural issues. This chapter summarizes some of the important dynamics of these sectors, including the role of land use, regional drivers, motivations for farmers and travelers, and economic impacts. As a means to illustrate several key points, highlights of several case studies, papers and reports about rural outdoor and agricultural tourism are summarized. To conclude, a research agenda for those interested in the role of tourism to rural economies is framed.

Book chapter↗

Assessment of existing groundwater quality data in the Green-Duwamish watershed, Washington

The United States Geological Survey (USGS) provided technical support to the Washington Department of Ecology (Ecology) in their assessment of the role groundwater plays in contributing pollutant loading to the Green-Duwamish River near Seattle, Washington. Ecology is developing watershed hydrology models of the Green-Duwamish watershed, and need to assign realistic contaminant concentrations to the various Hydrologic Response Units represented in their models. The USGS compiled existing groundwater quality data in the Green-Duwamish watershed, and this report summarizes results and interpretation of the dataset, including identifying data gaps and needs for further research and monitoring. The sources of existing data were the USGS’s National Water Information System, Ecology’s Environmental Information Management System, and a compilation of several studies by Leidos, a scientific research company. The water-quality parameters of interest included polychlorinated biphenyl (PCB) Aroclors and congeners, phthalates, carcinogenic polycyclic aromatic hydrocarbons (cPAHs), arsenic, copper, and zinc. Results were grouped into the four subwatersheds delineated in Ecology’s hydrology models: Duwamish, Lower Green, Soos, and Upper Green. Results from the Duwamish subwatershed were further sub-divided by the USGS into the Lower Duwamish, containing land adjacent to the Lower Duwamish Waterway Superfund site, and the Upper Duwamish, containing the remaining area of the Duwamish subwatershed. Groundwater quality data in the Lower Duwamish were treated separately because there is known contamination in this area. The availability of water quality data varied by subwatershed as follows: phthalate data was only available within the Duwamish, PCB data was available within the Duwamish and Lower Green, cPAH data was available within the Duwamish, Lower Green, and Soos, and data for arsenic, copper, and zinc were available within all four subwatersheds. More than 99 percent of the available data was within the Duwamish subwatershed, identifying a need for additional monitoring of groundwater quality in the other subwatersheds.

Washington↗

Surveillance strategies for detecting Chronic Wasting Disease in free-ranging deer and elk: Results of a CWD surveillance workshop

Executive Summary Chronic Wasting Disease (CWD), a fatal brain disease of North American deer and elk, has recently emerged as an important wildlife management issue. Interest and concern over the spread of this disease and its potential impact on free-ranging cervid populations has increased with discovery of the disease in numerous states and provinces. Current studies suggest that CWD may adversely affect of these highly visible, socially desirable, and economically valuable species. Despite the lack of evidence that CWD affects humans or livestock, a significant concern has been the perceived risk to humans and livestock. Uncertainty about whether CWD poses a health risk to hunters and their families who consume venison has resulted in testing of free-ranging cervids for CWD. In response to many of these concerns, wildlife management agencies across the nation have undertaken surveillance programs to detect CWD in their cervid populations. The nation-wide costs for an extensive CWD surveillance program have been estimated at several million dollars. This document provides guidance on the development and conduct of scientifically sound surveillance programs to detect CWD in free-ranging deer and elk populations. These guidelines will not apply equally to all jurisdictions. In many cases local circumstances, resources, area(s) of concern, disease risk, animal and landscape ecology, political, social, and many other factors will influence the objectives, design, and conduct of CWD surveillance programs. Part I of this report discusses the importance of management goals, strategies, and disease risks in developing a surveillance program. Part II describes surveillance methods, steps in designing a sampling strategy to detect CWD, alternative collection methods, and statistical considerations. Part III describes costs (personnel, time, and money) associated with implementation of these plans that will influence program design. Part IV outlines research that is needed to further development of CWD surveillance methods. Unfortunately in dealing with CWD, many important biological facts are still unknown and further research will be required to answer these questions. In most situations surveillance strategies suggested may require several years to complete, will require careful consideration of management objectives, and extensive operational planning in order to be meaningful and to be scientifically based.

Book↗

NOAA/West Coast and Alaska Tsunami Warning Center Pacific Ocean response criteria

New West Coast/Alaska Tsunami Warning Center (WCATWC) response criteria for earthquakes occurring in the Pacific basin are presented. Initial warning decisions are based on earthquake location, magnitude, depth, and - dependent on magnitude - either distance from source or precomputed threat estimates generated from tsunami models. The new criteria will help limit the geographical extent of warnings and advisories to threatened regions, and complement the new operational tsunami product suite. Changes to the previous criteria include: adding hypocentral depth dependence, reducing geographical warning extent for the lower magnitude ranges, setting special criteria for areas not well-connected to the open ocean, basing warning extent on pre-computed threat levels versus tsunami travel time for very large events, including the new advisory product, using the advisory product for far-offshore events in the lower magnitude ranges, and specifying distances from the coast for on-shore events which may be tsunamigenic. This report sets a baseline for response criteria used by the WCATWC considering its processing and observational data capabilities as well as its organizational requirements. Criteria are set for tsunamis generated by earthquakes, which are by far the main cause of tsunami generation (either directly through sea floor displacement or indirectly by triggering of slumps). As further research and development provides better tsunami source definition, observational data streams, and improved analysis tools, the criteria will continue to adjust. Future lines of research and development capable of providing operational tsunami warning centers with better tools are discussed.

Science of Tsunami Hazards↗

Great Basin NP and USGS cooperate on a geologic mapping program

The GRBA draft General Management Plan proposes development in several locations in Kious Spring and Lehman Caves 1:24,000 topographic quadrangles, and these proposed developments need geologic evaluation before construction. Brown will act as project manager to coordinate the IA with time frames, budget constraints, and the timely preparation of required maps, reports, and GIS data sets. In addition to having been an interpretive Ranger-Naturalist in two National Parks, Brown has published USGS interpretive geologic maps and USGS bulletins. Her research includes sedimentologic, stratigraphic, and structural analyses of Laramide intermontane basins in the Westem Interior.

Park Science↗

Ungulate migrations of the western United States, volume 2

Migration is widespread across taxonomic groups and increasingly recognized as fundamental to maintaining abundant wildlife populations and communities. Many ungulate herds migrate across the western United States to access food and avoid harsh environmental conditions. With the advent of global positioning system (GPS) collars, researchers can describe and map the year-round movements of ungulates at both large and small spatial scales. The migrations can traverse landscapes that are a mix of different jurisdictional ownership and management. Today, the landscapes migrating herds traverse are increasingly threatened by fencing, high-traffic roads, oil and gas development, and other types of permanent development. Through the use of GPS collars, a model of science-based conservation emerged in which migration corridors, stopovers, and winter ranges can be mapped in detail, thereby allowing threats and conservation opportunities to be identified and remedied. In 2018, the U.S. Geological Survey (USGS) assembled a Corridor Mapping Team (CMT) to work collaboratively with western states to map migrations of Odocoileus hemionus (mule deer), Cervus canadensis (elk), and Antilocapra americana (pronghorn). Led by the USGS Wyoming Cooperative Fish and Wildlife Research Unit, the team consists of Federal scientists, university researchers, and biologists and analysts from participating State and Tribal agencies. The first set of maps described a total of 42 migrations across 5 western states and was published in 2020 as the first volume of this report series. This second volume describes an additional 65 migrations mapped within 9 western states and select Tribal lands. As the western United States continues to grow, this report series and the associated map files released by the USGS will allow for migration maps to be used for conservation planning by a wide array of State and Federal stakeholders to reduce barriers to migration caused by fences, roads, and other development.

western United States↗

Coastal Prairie Restoration Information System: Version 1 (Louisiana)

The Coastal Prairie Restoration Information System (CPR) is a Microsoft Access database that allows users to query and view data about Louisiana coastal prairie species. Less than 0.1% of Louisiana's coastal prairie vegetation remains in a relatively undisturbed condition. Encompassing as much as 1 million hectares of land, coastal prairie is a hybrid of coastal wetlands and tall grass prairie. Over 550 plant species have been identified in Louisiana's coastal prairies to date. Efforts to conserve and restore this endangered ecosystem are limited by the ability of workers to identify and access knowledge about this diverse group of plants. In this database, a variety of data are provided for each of 650 coastal prairie species in Louisiana. The database was developed at the U.S. Geological Survey National Wetlands Research Center by Larry Allain, with software development by Myra Silva. Additional funding was provided by the biology department of the University of Louisiana at Lafayette (ULL), the ULL Center for Environmental and Ecological Technology, and the National Science Foundation.

Data Series↗

Integrated Science: Florida Manatees and Everglades Hydrology

Predicting and monitoring restoration effects on Florida manatees, which are known to make extended movements, will be incomplete if modeling and monitoring are limited to the smaller areas defined by the various res-toration components. U.S. Geological Survey (USGS) efforts, thus far, have focused on (1) collecting manatee movement data throughout the Ten Thousand Islands (TTI) region, and (2) developing an individual-based model for manatees to illustrate manatee responses to changes in hydrology related to the Picayune Strand Restoration Project (PSRP). In 2006, new regional research was begun to extend an Everglades hydrology model into the TTI region; extend the manatee movement model into the southern estuaries of Everglades National Park (ENP); and integrate hydrology and manatee data, models, and monitoring across the TTI region and ENP. Currently (2008), three research tasks are underway to develop the necessary modeling components to assess restoration efforts across the Greater Everglades Ecosystem.

Fact Sheet↗

Snake fungal disease in North America: U.S. Geological Survey updates

Snake fungal disease (SFD) results from a skin infection that has been documented only in snakes. Historically, reports of snakes with skin infections of unknown origin have been sporadic. Recently, the number of reported cases of skin infections in snakes has increased substantially. This emerging infectious disease, confirmed in numerous species of snakes, is caused by the fungus Ophidiomyces ophiodiicola . As of August 2017, O. ophiodiicola has been detected in at least 23 States and one Canadian Province. However, researchers suspect that SFD may be more widely distributed than these documented cases suggest, because efforts to monitor the health of many snake populations are limited. Snake fungal disease may also be underreported in populations where it affects snakes infrequently or in species that develop less severe illness. Signs of SFD include crusted or ulcerated scales, nodules (that is, abnormal bumps) under the skin, and facial disfiguration that can be quite severe, leading to emaciation and death. Many snake populations are already in decline due to habitat loss and dwindling prey populations, and the recent emergence of SFD may accelerate this decline, causing certain species to disappear entirely from some locations.

Fact Sheet↗

Cooperative activities of the U.S. Geological Survey with Historically Black Colleges and Universities, fiscal years 1983-90

The U.S. Department of the Interior, U.S. Geological Survey, has been involved in numerous cooperative activities with Historically Black Colleges and Universities. Assistance agreements, which include both grants and cooperative agreements, have fostered many educational research and development activities. These activities have included site visits, employment opportunities, curriculum development, seminars, and research projects. The activities are consistent with the Geological Survey's mission of conducting earth-science research and dissemination of the results. The cooperative have benefitted the Historically Black Colleges and Universities, their students, and the Geological Survey.

Open-File Report↗

Data Model and Relational Database Design for Highway Runoff Water-Quality Metadata

A National highway and urban runoff waterquality metadatabase was developed by the U.S. Geological Survey in cooperation with the Federal Highway Administration as part of the National Highway Runoff Water-Quality Data and Methodology Synthesis (NDAMS). The database was designed to catalog available literature and to document results of the synthesis in a format that would facilitate current and future research on highway and urban runoff. This report documents the design and implementation of the NDAMS relational database, which was designed to provide a catalog of available information and the results of an assessment of the available data. All the citations and the metadata collected during the review process are presented in a stratified metadatabase that contains citations for relevant publications, abstracts (or previa), and reportreview metadata for a sample of selected reports that document results of runoff quality investigations. The database is referred to as a metadatabase because it contains information about available data sets rather than a record of the original data. The database contains the metadata needed to evaluate and characterize how valid, current, complete, comparable, and technically defensible published and available information may be when evaluated for application to the different dataquality objectives as defined by decision makers. This database is a relational database, in that all information is ultimately linked to a given citation in the catalog of available reports. The main database file contains 86 tables consisting of 29 data tables, 11 association tables, and 46 domain tables. The data tables all link to a particular citation, and each data table is focused on one aspect of the information collected in the literature search and the evaluation of available information. This database is implemented in the Microsoft (MS) Access database software because it is widely used within and outside of government and is familiar to many existing and potential customers. The stratified metadatabase design for the NDAMS program is presented in the MS Access file DBDESIGN.mdb and documented with a data dictionary in the NDAMS_DD.mdb file recorded on the CD-ROM. The data dictionary file includes complete documentation of the table names, table descriptions, and information about each of the 419 fields in the database.

Open-File Report↗

Compilation of gallium resource data for bauxite deposits

Gallium (Ga) concentrations for bauxite deposits worldwide have been compiled from the literature to provide a basis for research regarding the occurrence and distribution of Ga worldwide, as well as between types of bauxite deposits. In addition, this report is an attempt to bring together reported Ga concentration data into one database to supplement ongoing U.S. Geological Survey studies of critical mineral resources. The compilation of Ga data consists of location, deposit size, bauxite type and host rock, development status, major oxide data, trace element (Ga) data and analytical method(s) used to derive the data, and tonnage values for deposits within bauxite provinces and districts worldwide. The range in Ga concentrations for bauxite deposits worldwide is <10 to 812 parts per million (ppm), with an average of 57 ppm. Gallium concentrations in lateritic bauxites range from below detection (< 8 ppm) to 146 ppm; the average concentration is 57 ppm Ga. The average Ga concentration for karst bauxite deposits is 58 ppm with a range between <10 to 180 ppm Ga. As a result, there are no substantial differences in gallium concentrations between karst- and laterite-type bauxites. We calculate the range in geologically available Ga in bauxite deposits worldwide between 30 and 82,720 metric tons (t), with an average of 14,909 t.

Open-File Report↗

Core Science Systems—Mission overview

The Core Science Systems Mission Area delivers nationally focused Earth systems and information science that provides fundamental research and data that underpins all Mission Areas of the USGS, the USGS Science Strategy, and Presidential, Secretarial, and societal priorities. — Kevin T. Gallagher, Associate Director, Core Science Systems The U.S. Geological Survey (USGS) Core Science Systems (CSS) Mission Area spans the Earth's "Critical Zone" (National Research Council, 2001). The Critical Zone is the near-surface interface that extends from the tops of the trees down to the base of the deepest groundwater. CSS provides a foundation for all USGS Mission Areas, as well as for the mission of the Department of the Interior (DOI), in the following ways: Conducts basic and applied science research and development Fosters broad understanding and application of analyses and information Provides a framework for data and information sharing Creates new geospatially enabled data and information Provides technical expertise in standards and methods Builds and facilitates partnerships and innovation

Fact Sheet↗

Changing Arctic ecosystems: ecology of loons in a changing Arctic

The U.S. Geological Survey (USGS) Changing Arctic Ecosystems (CAE) initiative informs key resource management decisions for Arctic Alaska by providing scientific information on current and future ecosystem response to a changing climate. From 2010 to 2014, a key study area for the USGS CAE initiative has been the Arctic Coastal Plain of northern Alaska. This region has experienced rapid warming during the past 30 years, leading to the thawing of permafrost and changes to lake and river systems. These changes, and projections of continued change, have raised questions about effects on wildlife populations that rely on northern lake ecosystems, such as loons. Loons rely on freshwater lakes for nesting habitat and the fish and invertebrates inhabiting the lakes for food. Loons live within the National Petroleum Reserve-Alaska (NPR-A) on Alaska’s northern coast, where oil and gas development is expected to increase. Research by the USGS examines how breeding loons use the Arctic lake ecosystem and the capacity of loons to adapt to future landscape change.

Alaska↗

South Florida Everglades: satellite image map

These satellite image maps are one product of the USGS Land Characteristics from Remote Sensing project, funded through the USGS Place-Based Studies Program (http://access.usgs.gov/) with support from the Everglades National Park (http://www.nps.gov/ever/). The objective of this project is to develop and apply innovative remote sensing and geographic information system techniques to map the distribution of vegetation, vegetation characteristics, and related hydrologic variables through space and over time. The mapping and description of vegetation characteristics and their variations are necessary to accurately simulate surface hydrology and other surface processes in South Florida and to monitor land surface changes. As part of this research, data from many airborne and satellite imaging systems have been georeferenced and processed to facilitate data fusion and analysis. These image maps were created using image fusion techniques developed as part of this project.

IMAP↗