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USGS2025

Multidecadal change in pesticide concentrations relative to human health benchmarks in the Nation’s groundwater

Groundwater-quality trend assessments identify aquifers that are responding to changes in pesticide use and the compounds that may pose a threat to water availability. The U.S. Geological Survey has been monitoring pesticide concentrations in groundwater for 25 principal aquifers across the conterminous United States since 1993. The groundwater well locations represent a range of soils, climate, and landforms. The wells are used to monitor groundwater underlying selected agricultural and urban settings and groundwater used for domestic supply. This study examined changes in relative concentrations, defined here as the percentage of wells with pesticide concentrations exceeding a human health benchmark (HHB). HHBs used in this report are legally enforceable drinking-water standards and nonenforceable drinking water levels. Relative pesticide concentration increases may lead to decreased water availability, as restrictions may be put in place for groundwater used as a drinking-water source. This study focused on concentration changes in 22 pesticides that were included in laboratory analysis from 1993 to 2023. The analysis and interpretation of these pesticide concentrations in groundwater have been separated into approximate decadal intervals (decade 1 (1993–2001), decade 2 (2002–12), and decade 3 (2013–22). For one pesticide, 1,2-dibromo-3-chloropropane (DBCP), concentration data were also collected in decade 4 (2023–onward). Atrazine, deethylatrazine, alachlor, prometon, and simazine were 5 pesticides detected at moderate concentrations (greater than 10 percent of the HHB but less than or equal to the HHB). The percentage of wells that had groundwater pesticide concentrations in the moderate concentration category decreased from 7 percent in decade 1 to 2 percent in decade 3. The agricultural networks had the highest percentages of wells with moderate concentrations, and these percentages decreased from 13 percent in decade 1 to 4 percent in decade 3. Moderate concentrations in the urban networks decreased between decades 1 and 2 from 4 percent to 0 percent. No moderate concentrations occurred in the urban networks in decade 3. The percentage of wells with moderate concentrations in the domestic supply networks (1 percent) was the lowest of all the network types and did not change across the three decades. Moderate atrazine or deethylatrazine concentrations occurred across all three decades in aggregated ecoregions representing similar soils, climate, and landforms in the Semiarid West, Midcontinent, and Northeastern United States. Moderate concentrations of prometon, alachlor, and simazine also occurred in the Midcontinent, Arid West, Northeast, South Atlantic Gulf, and Semiarid West regions, but the moderate concentrations did not persist across all three decades. DBCP was the only pesticide that exceeded its respective HHB, and the exceedances occurred across all four decades. In this report, the DBCP analysis was limited to one well network in the Central Valley, California. Agricultural use of DBCP was suspended in 1977. Forty-five years after being banned, DBCP concentrations were greater than the maximum contaminant level of 2 micrograms per liter (μg/L), but the number of exceedances decreased from 50 percent to 15 percent of the samples between 1993 and 2023. This assessment of decadal groundwater pesticide concentrations provides a characterization of changes in water availability because of pesticide contamination in areas where groundwater is used as a drinking-water source. The results highlight the importance of continued long-term monitoring and assessment of groundwater pesticides to identify locations and specific compounds that may pose a potential risk to human health.

continental United States↗

USGS2017

Health and condition of endangered young-of-the-year Lost River and Shortnose suckers relative to water quality in Upper Klamath Lake, Oregon, 2014–2015

Most mortality of endangered Lost River ( Deltistes luxatus ) and shortnose ( Chasmistes brevirostris ) suckers in Upper Klamath Lake, Oregon, occurs within the first year of life. Juvenile suckers in Clear Lake Reservoir, California, survive longer and may even recruit to the spawning populations. In a previous (2013–2014) study, the health and condition of juvenile suckers and the dynamics of water quality between Upper Klamath Lake and Clear Lake Reservoir were compared. That study found that apparent signs of stress or exposure to irritants, such as peribiliary cuffing in liver tissue and mild inflammation and necrosis in gill tissues, were present in suckers from both lakes and were unlikely to be clues to the cause of differential mortality between lakes. Seasonal trends in energy storage as glycogen and triglycerides were also similar between lakes, indicating prey limitation was not a likely factor in differential mortality. To better understand the relationship between juvenile sucker health and water quality, we examined suckers collected in 2014–2015 from Upper Klamath Lake, where water quality can be dynamic and, at times, extreme. While there were notable differences in water quality and fish health between years, we were not able to identify any specific water-quality-related causes for differential fish condition. Water quality was generally better in 2014 than in 2015. When considered together afflictions and abnormalities generally indicated healthier suckers in 2014 than 2015. Low dissolved-oxygen events (< 4 milligrams per liter) were less frequent and occurred earlier; high pH events (≥ 9.5) were less frequent and shorter in duration; large diel fluctuations in pH (≥ 1.4) were less frequent; water temperatures were warmer, particularly in July and September; and concentrations of microcystin in both large and small fractions of samples were lower in 2014 than in 2015. Total and therefore also un-ionized ammonia were low in 2014–2015 relative to concentrations known to affect suckers. Petechial hemorrhages of the skin, attached Lernaea spp. and eosinophilic hyaline droplets in the kidney tubules were less prevalent in 2014 than in 2015; however, hyperplastic and hypertrophic gill tissue and trichodinids on the gills were observed more frequently in 2014. There were more suckers with normal liver color and texture in 2014 than in 2015. The prevalence of suckers with liver inflammation was greater in 2014 and only observed in suckers collected after August 5, whereas liver inflammation occurred intermittently in 2015. Liver glycogen among suckers decreased in late-August 2014 and increased from early August to mid-September 2015. Lost River suckers had greater whole-body triglyceride content but a larger proportion with an absence of visceral fat observed in 2014 than in 2015. In contrast, shortnose suckers were similar between years in regard to both whole-body triglyceride and visceral fat. Black-spot-forming parasites (trematode metacercariae) were observed in a higher prevalence on shortnose suckers but not Lost River suckers in 2014 than in 2015. Opercular deformities were less prevalent in both species in 2014 than in 2015. Neither gross nor histological examination revealed a high prevalence of abnormalities in suckers that clearly indicate a primary mechanism for juvenile mortality in Upper Klamath Lake. Histological abnormalities were almost always focal and minimal or mild except where associated with parasites. Mild to severe focal abnormalities associated with Lernaea sp. attachment sites and encysted digenean (trematode) metacercariae are unlikely to be associated with mortality. Severe and diffuse inflammation and hyperplasia of the gills associated with Ichthyobodo sp. on one Lost River sucker, may indicate a potential cause of mortality. High mortality may have primarily occurred outside our study period (for example, in spring or over winter), or was caused by a factor that could not be detected with our methods (for example, predation). Alternatively, abnormalities in a small percentage of passively captured suckers in Upper Klamath Lake may indicate health-related issues that were more prevalent in populations than in our samples. Temporary decreases in liver glycogen stores may also indicate periods of stress, which may eventually lead to mortality of young suckers.

Oregon↗

USGS2024

Challenges and future directions in quantifying terrestrial evapotranspiration

Terrestrial evapotranspiration is the second-largest component of the land water cycle, linking the water, energy, and carbon cycles and influencing the productivity and health of ecosystems. The dynamics of ET across a spectrum of spatiotemporal scales and their controls remain an active focus of research across different science disciplines. Here, we provide an overview of the current state of ET science across in situ measurements, partitioning of ET, and remote sensing, and discuss how different approaches complement one another based on their advantages and shortcomings. We aim to facilitate collaboration among a cross-disciplinary group of ET scientists to overcome the challenges identified in this paper and ultimately advance our integrated understanding of ET.

Water Resources Research↗

USGS2018

Indicators of ecosystem structure and function for the Upper Mississippi River System

This report documents the development of quantitative measures (indicators) of ecosystem structure and function for use in a Habitat Needs Assessment (HNA) for the Upper Mississippi River System (UMRS). HNAs are led periodically by the U.S. Army Corps of Engineers’ Upper Mississippi River Restoration (UMRR) Program, which is the primary habitat restoration program on the UMRS. The UMRR Program helps determine how Federal, State and nongovernmental agencies can best address environmental issues on one of the world’s largest and most diverse river systems. Each indicator in this report represents at least one management objective developed for the river system. These objectives were developed in a previous planning effort using an ecosystem management conceptual framework (USACE, 2011). The objectives represent five essential ecosystem characteristics: hydraulics and hydrology, biogeochemistry, geomorphology, habitat, and biota. Subsequent to the 2011 planning effort, the UMRR increased its focus on improving the health and resilience of the UMRS. The indicators presented here are based on the five essential ecosystem characteristics and four aspects of ecosystems thought to support general ecosystem resilience (the ability of an ecosystem to adapt and respond to disturbances): (1) connectivity, (2) diversity and redundancy, (3) controlling variables, and (4) slow processes. Thus, we developed indicators that quantify both essential ecosystem characteristics and characteristics of a resilient river system. The indicators documented in this report focus on important aspects of river floodplain hydrogeomorphology, given the fundamental role hydrogeomorphology plays in determining habitat conditions and ecosystem health and resilience at broad geographic scales. The information contained within this report provides a broader scale (for example, system-wide) context for management decisions made at finer scales (for example, within river reaches or at project sites) and is designed for use in the formal system-wide Habitat Needs Assessment II (HNA–II) led by the UMRR Program.

Upper Mississippi River System↗

USGS2019

A comparison of bacteria cultured from unionid mussel hemolymph between stable populations in the upper Mississippi River and a mortality event in the Clinch River

The diagnosis of bacterial disease in freshwater unionid mussels has been hindered by a lack of baseline information regarding the microbial communities associated with these animals. In this study, we cultured and identified bacteria from the hemolymph of stable mussel populations from the upper Mississippi River basin and compared results to those from mussel populations experiencing a mortality event in the Clinch River, VA and TN. Several bacterial genera were consistently identified across mussel species and locations, appearing to be part of the natural bacterial flora. One noteworthy bacterial species was identified from the Clinch River: Yokenella regensbergei. Y.regensbergei occurred in relatively high prevalence during the mortality event but was absent from samples acquired after the mortality event. Its role, if any, in the mortality event is unknown but deserves further investigation. We suggest that future studies of freshwater mussel health incorporate hemolymph as a sample type due to its relative separation from the aquatic environment, its role in the circulatory system and the fact that it can be collected nonlethally.

Mississippi River basin↗

USGS2000

Beach and reef-flat sediments along the south shore of Molokai, Hawaii

As part of the U.S. Geological Survey's multi-disciplinary Coral Reef Project addressing the health and geological variability of coral reef systems, sediment components and their distribution along the fringing reef on the south shore of the Hawaiian island of Molokai are being examined. Particular interest is being paid to the types and origin of sediment found on the reef. The south shore of Molokai is sheltered by one of the largest fringing reefs in the US. At approximately 50 km in length, up to 1.5 km in width, and covered by 90% live coral in many locations, the reef seemingly should be able to provide ample sediment for large carbonate beaches. However, siliciclastic grains supplied by erosion of the basaltic uplands of Molokai are often the most conspicuous individual nearshore sediment type. Coralline algae and coral are the most common carbonate components of the beaches. On the nearshore reef-flat, chemically-altered carbonate grains, particularly coralline algae, are the most abundant component. Molluscs and Halimeda may be common in specific locations, but are usually minor components. Sediment calcium carbonate levels increase to the west from a minimum at Kamalo, and are high along the east shore of Molokai. However, these general island-scale trends may be overridden by local influences, such as protected stream mouths or high carbonate growth rates. Additionally, trends seen on the beach and nearshore environments may not reflect trends a few hundred meters offshore since shore normal trends are more pronounced than shore parallel ones.

Conference Paper↗

USGS2022

Spatially integrating microbiology and geochemistry to reveal complex environmental health issues: Anthrax in the contiguous United States

Maxent models were run using the B. anthracis presence data and/or the animal outbreak presence data. Models run using the animal outbreak data alone utilized two scales: the Outbreak State scale which included only states reporting animal anthrax outbreaks from 2001 to 2013 and the National scale which included all states in the contiguous United States. Three iterations of the environmental data were used and included the Sample Location dataset which utilized the environmental variable data with assigned latitude and longitude locations from the USGS NASGLP project; the Normalized dataset which scaled the environmental variables so that the values fell between 0 and 1; and the Interpolated dataset which provided an interpolation of the environmental variables averaged for each county and assigned to a point for that county at the centroid (rather than using the NASGLP latitude and longitude location). Two metrics were used to measure model performance including the widely used area under the curve (AUC) and an alternative method, the True Skill Statistic (TSS). The AUC gives the probability that a randomly chosen presence location has been correctly ranked higher than the absence/background site. AUC values at 0.5 or lower mean the ranking is no better than random, while the AUC values nearer to 1 mean the model is a better predictor. The TSS provides a comparison of how well the background predictions made by the model match the model results at the test dataset (presence) locations. TSS values near +1 means the model approaches perfect agreement, while values near −1 indicate the model is no better than random. Maxent models to determine the influence of environmental factors on the B. anthracis distribution using the PCR data yielded a low TSS, which suggested the model might be underfitting the data. This was not surprising due to the difficulty in recovering B. anthracis in soil samples as well as the samples themselves being discrete in nature and only capturing a snapshot in time. Therefore, the distribution of B. anthracis and its niche in the contiguous United States could not be determined in this study. However, efforts to investigate environmental factors that would have a higher potential of supporting an anthrax outbreak in wildlife and livestock yielded better results. Results showed that most of the Maxent models in this study performed best when using the Outbreak State scale. When the models were scaled up to the National scale, model performance declined, except for the Normalized variable dataset. At the Outbreak State scale, a large proportion of the area was predicted to be of higher probability for wildlife/livestock anthrax outbreaks, and the statistical measures assumed the model was underfitting the data. The model with the highest AUC and TSS scores for this study was the Outbreak State scale using Sample Location dataset (AUC = 0.918 and TSS = 0.82). Some of the variables found to be closely related to the occurrence of B. anthracis in this study included pH, drainage potential, and concentration of elements including Na, Ca, Sr, and Mg, which have also been found to be related to animal outbreaks or to the occurrence of B. anthracis in previous studies. The models in the current study indicated possible regions that have not had recent wildlife/livestock anthrax outbreaks but contained environmental conditions that could potentially support an outbreak if one were to occur (Michigan and Maine). This work provides an extension to the use of ecological niche modeling to outbreak potential in livestock/wildlife in the United States because it utilizes additional soil geochemistry data and has shown that further validation techniques, such as the TSS, should be considered in addition to AUC. Results from this study could be used by animal and public health officials to identify areas with a higher potential for anthrax outbreak in wildlife and livestock due to naturally occurring soil and environmental conditions.

Book chapter↗

USGS2025

Streamflow as a stressor: Disentangling hydrology and water quality impacts to characterize flow-ecology relationships for two stream assemblages across two southeastern landscapes

Disassociating the independent effects of flow and water quality on the ecology of flowing waters is an overarching goal in water resource science needed to improve the efficacy of watershed management. However, the interrelatedness of these gradients and their subsequent alteration due to land use change has constrained progress made on this front. The objective of this study was to use benthic macroinvertebrate and fish assemblage data to characterize flow-ecology relationships that were unchanged by water quality impacts across two southeastern landscapes in the USA to help detect ecological change driven by flow alteration. General linear latent models were used to identify taxa that were responsive to high or low flow metrics and water quality gradients. Bayesian hierarchical generalized additive models were then developed using these indicator taxa and three biological metrics to identify flow-specific relationships that were unaffected by water quality impacts. Three low flow-specific relationships were identified, illustrating how potential agricultural or urban impacts to hydrology reduced stream biological health. Importantly, flow-ecology relationships developed using indicator taxa in this study effectively captured hydrology-specific impacts while biological metrics typical of state monitoring and assessment programs did not. Therefore, developing flow-specific biological metrics is a critical step when developing management strategies targeting flow alteration. Implementing standardized frameworks such as the one characterized here can limit contradictory findings and improve streamflow enhancement and restoration project efficacy. These low flow-specific relationships will enhance managers' capacity to develop environmental flow standards, monitor their success, and better understand urban and agricultural impacts on stream assemblages.

Alabama↗

USGS2019

Baseline environmental monitoring of groundwater, surface water, and soil at the Ammonium Perchlorate Rocket Motor Destruction Facility at the Letterkenny Army Depot, Chambersburg, Pennsylvania, 2016

Letterkenny Army Depot in Chambersburg, Pennsylvania, built an Ammonium Perchlorate Rocket Motor Destruction (ARMD) facility in 2016. The ARMD Facility was designed to centralize rocket motor destruction and contain or capture all waste during the destruction process. Ideally, there would be no contaminant transport to air, soil, or water from the facility, but the Code of Federal Regulations requires that any hazardous waste disposal facility have an environmental monitoring program in place. In a study by the U.S. Geological Survey, in cooperation with the Letterkenny Army Depot, baseline characterization of constituents in groundwater, surface water, and soil was conducted from September to December 2016 to document site conditions prior to the beginning of operations at the facility in January 2017. Groundwater wells, surface water, and soils were sampled monthly during the baseline characterization period. No sediment transport from the site occurred on days when samples were collected from surface-water sites, so no sediment was collected from the retention basin at the facility during the baseline period. Data collected during the baseline period can be compared to data collected in future years to determine whether there is any contaminant transport from the ARMD Facility to the surrounding environment. During the baseline characterization period, monthly samples were collected from 4 groundwater wells and 9 soil sites near the ARMD Facility. The only surface-water site sampled monthly during the baseline period was upgradient from the facility. There was no streamflow at surface-water sites downgradient from the facility on days when surface-water samples were collected during the baseline characterization period. Groundwater results for the four wells sampled near the ARMD Facility during the baseline period did not show any major water-quality issues. Mean specific conductance (SC) and pH in groundwater ranged from 220 to 771 microsiemens per centimeter at 25 degrees Celsius (μS/cm) and 6.45 to 6.98, respectively. No constituents in groundwater samples exceeded any U.S. Environmental Protection Agency (EPA) Maximum Contaminant Level (MCL). Dissolved iron (Fe) was the only groundwater constituent that exceeded a Secondary Maximum Contaminant Level (SMCL) established by the EPA. The SMCL for Fe is 300 micrograms per liter (μg/L); samples from three wells had mean dissolved Fe concentrations ranging from 1,100 to 2,600 μg/L. The only volatile organic compounds (VOCs) detected in groundwater samples were bromomethane, acetone, and chloromethane. All VOC detections in groundwater samples were less than the Reporting Detection Levels (RDLs). These three compounds also were detected in blank samples submitted for groundwater samples. Perchlorate was not detected in any groundwater sample collected during the baseline period. Surface-water data collected during the baseline period were strictly representative of a stream reach upgradient from the ARMD Facility. Stream discharge ranged from 0.03 to 0.08 cubic feet per second during sample collection. The mean SC and pH were 310 μS/cm and 7.6, respectively. No EPA established MCLs or SMCLs were exceeded for any constituents in samples collected from this upgradient stream. Some VOCs were detected in surface water at less than the RDLs. The VOCs detected in surface water were generally the same VOCs as those detected at less than the RDLs for groundwater. Perchlorate was detected in each sample collected from the stream; the mean concentration was 0.07 μg/L. All perchlorate results were less than the RDL of 0.2 μg/L. Soil samples collected during the baseline period did not have any constituent concentrations that exceeded any medium-specific concentrations (MSC) or soil screening levels (SSL) established by either the Commonwealth of Pennsylvania or the EPA. The Commonwealth of Pennsylvania calculates MSCs based on either a function of acceptable concentrations in groundwater or based on health concerns if the soil is directly contacted. The EPA derives acceptable concentrations of constituents (SSLs) in soil based on standardized equations combining exposure information assumptions with EPA toxicity data. The EPA calculates SSLs for residential and industrial sites. Soil sites at the ARMD Facility were considered “industrial” for comparative purposes. There was at least one order of magnitude difference between any inorganic constituent concentration detected in soil and the MSC and (or) SSL for that constituent. Four VOCs were detected in soil samples collected during the baseline period. None of the VOCs detected in the soils were within three orders of magnitude of any established MSCs or SSLs. The VOCs detected in soil were dichloromethane (also known as methylene chloride), methyl tert-butyl ether (MTBE), tetrachloroethene, and acetone (only detected once). Dichloromethane was the only VOC detected at greater than the RDLs; concentrations in all soil samples were greater than the RDLs. Dichloromethane concentrations ranged from 1.9 to 50.1 micrograms per kilogram (μg/kg). MTBE was detected in 50 percent of samples collected but all results were less than the RDLs of 1.7 to 2.6 μg/kg. Tetrachloroethene was detected in 20 percent of soil samples collected, with a maximum estimated value of 1.5 μg/kg. Inorganic constituents with the highest concentrations in soil were Fe and aluminum (Al); mean Fe and Al concentrations ranged from 28,700 to 52,400 and 10,300 to 19,800 milligrams per kilogram (mg/kg), respectively. Data collected during the baseline period in 2016 can be compared to future data to determine whether concentrations in water and soils surrounding the facility have shown any changes that could be caused by the facility operation.

Pennsylvania↗

USGS2021

Periphyton biomass and community compositions as indicators of water quality in the Lower Grand River hydrologic unit, Missouri and Iowa, 2011–18

Biological communities, including periphyton, are continuously affected by chemical, physical, and other biological factors, and the health of these communities can reflect the overall health of the aquatic system. A diverse community is more robust, and communities with lower richness and evenness often indicate a degraded community dominated by few taxa tolerant to the degraded conditions, which makes the community more susceptible to ecological changes. Water-quality nutrient samples were collected at sites in the Lower Grand River during 2010 through 2018 and periphyton sample collections began in 2011 to describe the periphyton community and overall ecological health. Nutrient sample concentrations were generally elevated at these sites, which can lead to eutrophication, excessive plant and algae growth, drinking-water taste and odor problems, low dissolved-oxygen concentrations, and harmful algal blooms. Concentrations of total nitrogen were greater than acceptable as described by the U.S. Environmental Protection Agency, and total phosphorus concentrations were greater than reference concentrations. Periphyton communities were dominated by taxa that are tolerant to or indicative of elevated nutrient concentrations; and nuisance algae, or harmful algal bloom producers, were identified at all sites, except one. The presence of these producers indicates that harmful algal blooms may have high potential during optimal conditions at these sites. Chlorophyll concentrations that exceed 100 milligrams per square meter are considered nuisance and were determined in 11 percent of the samples and at every site during September 2012. Samples were collected during low-flow conditions when nutrient concentrations are generally lower than during high-flow and runoff conditions. Elevated nutrient concentrations during low-flow conditions indicate nutrient concentrations are likely elevated throughout most of the year. Agriculture is the primary land use within the Lower Grand River and is likely a primary source of nutrients and sediments. Conservation practices intended to reduce nutrient loss from agriculture fields have increased because of the Mississippi River Basin Healthy Watersheds Initiative and will potentially increase the ecological, chemical, and physical health of these waterways.

Iowa, Missouri↗

USGS2012

Distribution and condition of young-of-year Lost River and shortnose suckers in the Williamson River Delta restoration project and Upper Klamath Lake, Oregon, 2008-10--Final Report

The Nature Conservancy undertook restoration of the Williamson River Delta Preserve with a primary goal "to restore and maintain the diversity of habitats that are essential to the endangered [Lost River sucker ( Deltistes luxatus ) and shortnose sucker ( Chasmistes brevirostris )] while, at the same time, minimizing disturbance and adverse impacts" (David Evans and Associates, 2005). The Western Fisheries Research Center of the U.S. Geological Survey was asked by the Bureau of Reclamation to assist The Nature Conservancy in assessing the use of the restoration by larval and juvenile suckers. We identified five obtainable objectives to gauge the habitat suitability for young-of-year suckers in the permanently flooded portions of the two most recently restored sections (Goose Bay and Tulana) of the Williamson River Delta Preserve (hereafter referred to as the Preserve) and its effects on the distribution and health of larval and juvenile suckers. Several of these objectives were met through collaborations with The Nature Conservancy, Oregon State University, Oregon Water Science Center, and Leetown Science Center. Our findings were in concurrence with those of The Nature Conservancy, who found that the Preserve supported young-of-year suckers at least as well as adjacent lake habitats (Erdman and others, 2011) despite the prevalence of non-native and piscivorous species in the system. The Preserve was recolonized by all fishes in the regional species pool, both native and non-native, between the time each portion of the Preserve (Goose Bay and Tulana) was inundated in autumn and the following spring. A large number of fish capable of preying on endangered larval suckers and a few fish that could prey on juvenile suckers were captured in the Preserve, but these species were no more abundant in the Preserve than in adjacent lakes. Larvae and age-0, age-1, and age-2 juvenile Lost River and shortnose suckers were captured in the Preserve, Upper Klamath Lake, and Agency Lake, indicating that these species reared in restored and unaltered lake habitats. We captured too few larval suckers to examine patterns in spatial or temporal distribution. Once endangered suckers transitioned into juveniles, as defined by morphological development, they continued to disperse from shallow to deep water throughout the Preserve and into adjacent lakes. Age-1 and age-2 suckers captured throughout the Preserve and in adjacent lake habitats, especially in spring, show continued use of restored habitat by these species. Quantitative examination of habitat use by age-0 juvenile suckers that accounted for imperfect detection indicated the portion of habitat used increased throughout July and August each year until the entire study area was used by one or more age-0 juvenile suckers by the end of August. Our rigorous evaluation showed both restored Preserve and unaltered lake habitats were equally used by age-0 juvenile suckers. Although all sampled habitats were used, multi-state occupancy models indicated that more age-0 suckers occupied shallow rather than deep habitats within the range of depths we sampled (0.5–4.3 m). We were unable to compare health and condition of juvenile suckers among habitats, due to their movement among habitats. However, documentation of length-weight relationships, afflictions and deformities, and histology indicated juvenile suckers captured in all habitats maintained a similar level of health among the 3 years of our study.

Oregon↗

USGS2026

Evaluating harvest liberalization strategies on population dynamics of southern latitude temperate-breeding Canada geese

The recovery of the Canada goose ( Branta canadensis ) is one of North America's greatest conservation success stories. Today, continental abundance of temperate-breeding Canada geese (those breeding in southern Canada and lower 48 states in the United States) greatly exceeds historical levels. As a result of increased abundance, human–goose conflicts have also increased, ranging from private and agricultural property damage to human health concerns. Managers have primarily attempted to lower Canada goose populations using hunter harvest via liberalized hunting regulations (increased bag limits and total hunting days). To evaluate the effectiveness of harvest strategies for temperate-breeding Canada geese, managers need a better understanding of how liberalized hunting regulations affect population dynamics. We estimated survival and harvest probabilities, abundance, and recovery distribution of temperate-breeding Canada geese banded in Arkansas, USA, during 2005–2020. We found that adult harvest probabilities declined overall during the study and adult survival probabilities increased. Annual abundances of juvenile geese (≤1 year old) declined during the study, whereas there was no detectable trend in abundance of the adult population over time. Most Canada geese breeding in Arkansas were shot in Arkansas, indicating potential for population dynamics to be influenced largely by state-specific harvest regulations. However, our results suggest that harvest liberalization as a management tool may have limited capacity to further influence population dynamics of Canada geese. Declines in productivity and recruitment likely had a greater influence on the similar observed declines in juvenile and adult abundances, respectively, during our study. More research is needed to better understand the ecological mechanism affecting the population dynamics of Canada geese in both urban and rural environments.

Arkansas↗

USGS2024

Ensemble2: Scenarios ensembling for communication and performance analysis

Throughout the COVID-19 pandemic, scenario modeling played a crucial role in shaping the decision-making process of public health policies. Unlike forecasts, scenario projections rely on specific assumptions about the future that consider different plausible states-of-the-world that may or may not be realized and that depend on policy interventions, unpredictable changes in the epidemic outlook, etc. As a consequence, long-term scenario projections require different evaluation criteria than the ones used for traditional short-term epidemic forecasts. Here, we propose a novel ensemble procedure for assessing pandemic scenario projections using the results of the Scenario Modeling Hub (SMH) for COVID-19 in the United States (US). By defining a “scenario ensemble” for each model and the ensemble of models, termed “Ensemble 2 "> 2 ”, we provide a synthesis of potential epidemic outcomes, which we use to assess projections’ performance, bypassing the identification of the most plausible scenario. We find that overall the Ensemble 2 "> 2 models are well-calibrated and provide better performance than the scenario ensemble of individual models. The ensemble procedure accounts for the full range of plausible outcomes and highlights the importance of scenario design and effective communication. The scenario ensembling approach can be extended to any scenario design strategy, with potential refinements including weighting scenarios and allowing the ensembling process to evolve over time.

Epidemics↗

USGS2018

Analysis of vegetation recovery surrounding a restored wetland using the normalized difference infrared index (NDII) and normalized difference vegetation index (NDVI)

Watershed restoration efforts seek to rejuvenate vegetation, biological diversity, and land productivity at Cienega San Bernardino, an important wetland in southeastern Arizona and northern Sonora, Mexico. Rock detention and earthen berm structures were built on the Cienega San Bernardino over the course of four decades, beginning in 1984 and continuing to the present. Previous research findings show that restoration supports and even increases vegetation health despite ongoing drought conditions in this arid watershed. However, the extent of restoration impacts is still unknown despite qualitative observations of improvement in surrounding vegetation amount and vigor. We analyzed spatial and temporal trends in vegetation greenness and soil moisture by applying the normalized difference vegetation index (NDVI) and normalized difference infrared index (NDII) to one dry summer season Landsat path/row from 1984 to 2016. The study area was divided into zones and spectral data for each zone was analyzed and compared with precipitation record using statistical measures including linear regression, Mann– Kendall test, and linear correlation. NDVI and NDII performed differently due to the presence of continued grazing and the effects of grazing on canopy cover; NDVI was better able to track changes in vegetation in areas without grazing while NDII was better at tracking changes in areas with continued grazing. Restoration impacts display higher greenness and vegetation water content levels, greater increases in greenness and water content through time, and a decoupling of vegetation greenness and water content from spring precipitation when compared to control sites in nearby tributary and upland areas. Our results confirm the potential of erosion control structures to affect areas up to 5 km downstream of restoration sites over time and to affect 1 km upstream of the sites.

Cuenca Los Ojos, San Bernardino National Wildlife ↗

USGS2013

A compilation of U.S. Geological Survey pesticide concentration data for water and sediment in the Sacramento–San Joaquin Delta region: 1990–2010

Beginning around 2000, abundance indices of four pelagic fishes (delta smelt, striped bass, longfin smelt, and threadfin shad) within the San Francisco Bay and Sacramento–San Joaquin Delta began to decline sharply (Sommer and others, 2007). These declines collectively became known as the pelagic organism decline (POD). No single cause has been linked to this decline, and current theories suggest that combinations of multiple stressors are likely to blame. Contaminants (including current-use pesticides) are one potential stressor being investigated for its role in the POD (Anderson, 2007). Pesticide concentration data collected by the U.S. Geological Survey (USGS) at multiple sites in the delta region over the past two decades are critical to understanding the potential effects of current-use pesticides on species of concern as well as the overall health of the delta ecosystem. In April 2010, a compilation of contaminant data for the delta region was published by the State Water Resources Control Board (Johnson and others, 2010). Pesticide occurrence was the major focus of this report, which concluded that “there was insufficient high quality data available to make conclusions about the potential role of specific contaminants in the POD.” The report cited multiple sources; however, data collected by the USGS were not included in the publication even though these data met all criteria listed for inclusion in the report. What follows is a summary of publicly available USGS data for pesticide concentrations in surface water and sediments within the Sacramento–San Joaquin Delta region from the years 1990 through 2010. Data were retrieved though the USGS National Water Information System (NWIS) database, a publicly available online-data repository (U.S. Geological Survey, 1998), and from published USGS reports (also available online at http://pubs.er.usgs.gov/). The majority of the data were collected in support of two long term USGS monitoring programs—National Water Quality Assessment Program (NAWQA; http://water.usgs.gov/ nawqa/) and National Stream Quality Accounting Network (NASQAN; http://water.usgs.gov/nasqan/)—and through projects associated with the USGS Toxics Substances Hydrology Program (http://toxics.usgs.gov/). In addition, data were collected during multiple research projects that were supported by various federal, state, and local agencies. Although these data have been previously published in some form, it is hoped that by focusing on samples collected within the delta region and presenting these data in a concise format, they will be a valuable resource for scientists, resource managers, and members of the public working to understand the role of pesticides in the POD and their potential effects on the overall health of the delta ecosystem.

California↗

USGS2025

Apicomplexan and non-metazoan microeukaryotes in the thermosensitive reef-building coral Acropora hyacinthus shift in abundance throughout an extreme coral bleaching event

Coral reefs play vital roles in global marine systems and are currently facing increased threats of bleaching. Coral bleaching is heavily influenced by the host-associated microeukaryote community – most notably the dinoflagellate family Symbiodiniaceae. The apicomplexan family Corallicolidae, is the second most abundant member of the microeukaryote community, yet their role in coral health is largely unknown. To explore the role that this apicomplexan and the greater non-metazoan microeukaryotic community play in coral health, samples of a thermally sensitive scleractinian coral, Acropora hyacinthus , were collected over the course of a severe coral bleaching event and its aftermath. Through 18S rRNA gene sequencing analysis, we found that taxa within the family Corallicolidae were relatively enriched in corals during, and immediately after, the severe bleaching event as compared to before or one year after. Although utilizing 18S rRNA gene sequencing methods is not the standard for Symbiodiniaceae community profiling, we were able to observe symbiont shuffling among the Symbiodiniaceae communities, as the dominant algal symbiont shifted from the genus Cladocopium to the genus Symbiodinium following the bleaching event. Furthermore, the non-metazoan microeukaryote community displayed a general shift towards a state of dysbiosis; evidenced by substantial changes in both microeukaryote community composition and dispersion. These results offer insight into the dynamics of apicomplexans throughout the course of an increasingly common global coral reef stressor.

Mo’orea↗

USGS2011

Detection of coastal and submarine discharge on the Florida Gulf Coast with an airborne thermal-infrared mapping system

Along the Gulf Coast of Florida north of Tampa Bay lies a region characterized by an open marsh coast, low topographic gradient, water-bearing limestone, and scattered springs. The Floridan aquifer system is at or near land surface in this region, discharging water at a consistent 70-72°F. The thermal contrast between ambient water and aquifer discharge during winter months can be distinguished using airborne thermal-infrared imagery. An airborne thermal-infrared mapping system was used to collect imagery along 126 miles of the Gulf Coast from Jefferson to Levy County, FL, in March 2009. The imagery depicts a large number of discharge locations and associated warm-water plumes in ponds, creeks, rivers, and nearshore waters. A thermal contrast of 6°F or more was set as a conservative threshold for identifying sites, statistically significant at the 99% confidence interval. Almost 900 such coastal and submarine-discharge locations were detected, averaging seven to nine per mile along this section of coast. This represents approximately one hundred times the number of previously known discharge sites in the same area. Several known coastal springs in Taylor and Levy Counties were positively identified with the imagery and were used to estimate regional discharge equivalent to one 1st-order spring, discharging 100 cubic feet per second or more, for every two miles of coastline. The number of identified discharge sites is a conservative estimate and may represent two-thirds of existing features due to low groundwater levels at time of overflight. The role of aquifer discharge in coastal and estuarine health is indisputable; however, mapping and quantifying discharge in a complex karst environment can be an elusive goal. The results of this effort illustrate the effectiveness of the instrument and underscore the influence of coastal springs along this stretch of the Florida coast.

Florida↗

USGS2008

Environmental presence and persistence of pharmaceuticals: An overview

Emerging contaminants (ECs) in the environment – that is, chemicals with domestic, municipal, industrial, or agricultural sources that are not commonly monitored but may have the potential for adverse environmental effects – is a rapidly growing field of research. The use of “emerging” is not intended to infer that the presence of these compounds in the environment is new. These chemicals have been released into the environment as long as they have been in production or, in the case of hormones and other endogenous compounds, since the rise of animal life. What is emerging is the interest by the scientific and lay communities in the presence of these chemicals in the environment, the analytical capabilities required for detection, and the subtle effects that very small concentrations of these chemicals appear to have on aquatic biota. In December 2006, Environmental Science & Technology devoted an entire special issue (volume 40, number 23) to the topic of ECs, illustrating the increased interest in the subject. Within the EGs, one particular class that has seen a substantial increase in research over the past 10 years is pharmaceuticals and personal-care products (PPCPs). This increased research interest can be demonstrated by several means, including requests for proposals from funding agencies, but the clearest indication of a focused effort to understand the introduction, transformation, and potential health and environmental effects of PPCPs and ECs, in general, is the number of published reports. This increase can be shown by examining six environmental journals that regularly publish PPCP-related papers – Chemosphere , Environmental Science & Technology , Environmental Toxicology and Chemistry , Science of the Total Environment , Water Research , and Water Science and Technology . In 1998 there were 22 papers published on pharmaceuticals, antibiotics, or drugs in these 6 journals; by 2006, this number increased sixfold to 132 papers (Figure 1.1). This growth can be attributed to a number of factors. The presence of pharmaceuticals in surface-water samples from Europe and the United States was documented in several sentinel papers. These ground-breaking works encouraged other scientists to examine the rivers, streams, lakes, and reservoirs in their regions for such chemicals. In addition, the intense public attention paid to news reports on the environmental detections of these chemicals and possible effects of aquatic life has made this issue visible to the wastewater-treatment, drinking-water treatment, and regulatory communities. This has driven the funding bodies associated with these communities to fund studies or request proposals that address the presence, fate, and effects of PPCPs in aquatic systems. The release of the first comprehensive reconnaissance of pharmaceuticals and other wastewater contaminants in the United States provides an example of the intense media interest in this topic. Within 6 days on online publication of this study, 72 newspapers across the United States had published articles describing the results, either locally written or based on international media syndicate reports. There also was substantial concurrent coverage by local and national radio and television outlets, including the Cable News Network, ABC World News Tonight , and National Public Radio. A substantial fraction of these news stories may be attributable to press releases and media briefings prior to publication. However, the interest by television and print journalists in reporting the results of a peer-reviewed journal article to the general public was motivated by the recognition that describing the presence of PPCPs in water supplies would be of interest to the public. To better convey the results of the study published by Koplin et al. to the public, a separate general-interest fact sheet was published to summarize the important points of the study. Because PPCPs are commonly and widely used by individuals, there is likely a preexisting, personal identification with these compounds that does not occur for the wide range of other organic and inorganic contaminants whose presence in the environment has previously been described. This greater public “name recognition” makes itself known through the media to the regulatory and technical community and has prompted interest in sponsoring research that defines the composition and concentrations of PPCPs in potential sources and their fate and effects following relase into the environment. Independent of the drivers that potentially fuel the interest in studies of PPCPs, it is clear that PPCP research has grown beyond surface-water studies to examine issues such as: • Presence in other matrices, such as groundwater, landfill leachates, sediments, and biosolids. • Environmental transport and fate in surface water, groundwater, and soils amended with reclaimed water or biosolids. • PPCP source elucidation, such as wastewater treatment plant (WWTP) effluents, confined animal feeding operations (CAFOs), and aquaculture. • Removal during wastewater and drinking-water treatment. • Effects on aquatic ecosystems, terrestrial ecosystems, and human health. The chapters in this book provide an extensive examination of current environmental pharmaceutical research and are divided into three sections: “Occurrence and Analysis of Pharmaceuticals in the Environment,” “Environment Fate and Transformations of Veterinary Pharmaceuticals,” and “treatment of Pharmaceuticals in Drinking Water and Wastewater.” The purpose of this introductory overview chapter is to outline current (2004-2006) knowledge about the presence and concentration of PPCPs as described in the published literature. Previous reviews should be consulted for discussions on pre-2004 publications. Those reviews will provide the reader with a comprehensive introduction to the topic of PPCPs in the environment. This chapter describes the sources of PPCPs and other organic contaminants often associated with human wastewater into the environment, the range of concentrations present in various environmental compartments, and the potential routes of removal/sequestration. An overview of the sources and fate of veterinary pharmaceuticals will be discussed in Chapter 5, “Fate and Transport of Veterinary Medicines in the Soil Environment.”

Book chapter↗