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USGS2015

EAARL-B coastal topography: Chandeleur Islands, Louisiana, 2012: seamless (bare earth and submerged)

These remotely sensed, geographically referenced elevation measurements of light detection and ranging ( lidar )-derived seamless (bare-earth and submerged) topography datasets were produced by the U.S. Geological Survey ( USGS ), St . Petersburg Coastal and Marine Science Center, St . Petersburg, Florida. This project provides datasets acquired on August 7 and 8, 2012, for a portion of the Chandeleur Islands, Louisiana. An innovative airborne lidar system, known as the second-generation Experimental Advanced Airborne Research Lidar ( EAARL -B), was used during data acquisition. The EAARL -B system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometers) lidar designed to map nearshore bathymetry, topography, and vegetation structure simultaneously. For more information about similar projects, please visit the Lidar for Science and Resource Management Web site.

Louisiana↗

USGS2021

Genetic variation in sea otters (Enhydra lutris) from the North Pacific with relevance to the threatened Southwest Alaska Distinct Population Segment

For the sea otter ( Enhydra lutris ), genetic population structure is an area of research that has not received significant attention, especially in Southwest Alaska where that distinct population segment has been listed as threatened since 2005 pursuant to the U.S. Endangered Species Act. In this study, 501 samples from 14 locations from Prince William Sound, Alaska to the Commander Islands in Russia were analyzed for variation at 13 microsatellite loci. Our results indicate a high degree of genetic divergence among the 14 locations ( F ST = 0.120) with gene flow conforming to the isolation by distance (IBD) model ( r 2 = 0.491, p < .05). The 14 sampling locations formed six geographic associations in clustering and ordination analyses that likely correspond to remnant population lineages: (1) Southcentral Alaska, (2) Kodiak and North Alaska Peninsula, (3) South Alaska Peninsula and Bristol Bay, (4) Eastern Aleutian, (5) Western Aleutian, and (6) the Commander Islands. Except for South Alaska Peninsula and Bristol Bay, these clusters closely agree with previously defined stock and management unit boundaries. Our results reveal significant genetic population structure and are generally congruent with current management strategies for the threatened Southwest Alaska distinct population segment.

Alaska↗

USGS2008

Devonian carbonate platform of eastern Nevada: Facies, surfaces, cycles, sequences, reefs, and cataclysmic Alamo Impact Breccia

Devonian limestone and dolostone formations are superbly exposed in numerous mountain ranges of southeastern Nevada. The Devonian is as thick as 1500 m there and reveals continuous exposures of a classic, long-lived, shallow-water carbonate platform. This field guide provides excursions to Devonian outcrops easily reached from the settlement of Alamo, Nevada, ~100 mi (~160 km) north of Las Vegas. Emphasis is on carbonate-platform lithostratigraphy, but includes overviews of the conodont biochronology that is crucial for regional and global correlations. Field stops include traverses in several local ranges to study these formations and some of their equivalents, in ascending order: Lower Devonian Sevy Dolostone and cherty argillaceous unit, Lower and Middle Devonian Oxyoke Canyon Sandstone, Middle Devonian Simonson Dolostone and Fox Mountain Formation, Middle and Upper Devonian Guilmette Formation, and Upper Devonian West Range Limestone. Together, these formations are mainly composed of hundreds of partial to complete shallowing-upward Milankovitch-scale cycles and are grouped into sequences bounded by regionally significant surfaces. Dolomitization in the Sevy and Simonson appears to be linked to exposure surfaces and related underlying karst intervals. The less-altered Guilmette exhibits characteristic shallowing-upward limestone-to-dolostone cycles that contain typical carbonate-platform fossil- and ichnofossil-assemblages, displays stacked biostromes and bioherms of flourishing stromatoporoids and sparse corals, and is punctuated by channeled quartzose sandstones. The Guilmette also contains a completely exposed ~50-m-thick buildup that is constructed mainly of stromatoporoids, with an exposed and karstified crest. This buildup exemplifies such Devonian structures known from surface and hydrocarbon-bearing subsurface locations worldwide. Of special interest is the stratigraphically anomalous Alamo Breccia that represents the middle member of the Guilmette. This spectacular cataclysmic megabreccia, produced by the Alamo Impact Event, is as thick as 100 m and may be the best exposed proven bolide impact breccia on Earth. It contains widespread intervals generated by the seismic shock, ejecta curtain, tsunami surge, and runoff generated by a major marine impact. Newly interpreted crater-rim impact stratigraphy at Tempiute Mountain contains an even thicker stack of impact breccias that are interpreted as parautochthonous, injected, fallback, partial melt, resurge, and possibly post-Event crater fill.

Nevada↗

USGS2022

Revisiting the 1899 earthquake series using integrative geophysical analysis in Yakutat Bay, Alaska

A series of large earthquakes in 1899 affected southeastern Alaska near Yakutat and Disenchantment Bays. The largest of the series, a M W 8.2 event on 10 September 1899, generated an ~12-m-high tsunami and as much as 14.4 m of coseismic uplift in Yakutat Bay, the largest coseismic uplift ever measured. Several complex fault systems in the area are associated with the Yakutat terrane collision with North America and the termination of the Fairweather strike-slip system, but because faults local to Yakutat Bay have been incompletely or poorly mapped, it is unclear which fault system(s) ruptured during the 10 September 1899 event. Using marine geophysical data collected in August 2012, we provide an improved tectonic framework for the Yakutat area, which advances our understanding of earthquake hazards. We combined 153 line km of 2012 high-resolution multichannel seismic (MCS) reflection data with compressed high-intensity radar pulse (Chirp) profiles, basin-scale MCS data, 2018 seafloor bathymetry, published geodetic models and thermochronology data, and previous measurements of coseismic uplift to better constrain fault geometry and subsurface structure in the Yakutat Bay area. We did not observe any active or concealed faults crossing Yakutat Bay in our high-resolution data, requiring faults to be located entirely onshore or nearshore. We interpreted onshore faults east of Yakutat Bay to be associated with the transpressional termination of the Fairweather fault system, forming a series of splay faults that exhibit a horsetail geometry. Thrust and reverse faults on the west side of the bay are related to Yakutat terrane underthrusting and collision with North America. Our results include an updated fault map, structural model of Yakutat Bay, and quantitative assessment of uncertainties for legacy geologic coseismic uplift measurements. Additionally, our results indicate the 10 September 1899 rupture was possibly related to stress loading from the earlier Yakutat terrane underthrusting event of 4 September 1899, with the majority of 10 September coseismic slip occurring on the Esker Creek system on the northwest side of Yakutat Bay. Limited (~2 m) coseismic or postseismic slip associated with the 1899 events occurred on faults located east of Yakutat Bay.

Alaska↗

USGS2001

Geologic Map of the Thaumasia Region, Mars

The geology of the Thaumasia region (fig. 1, sheet 3) includes a wide array of rock materials, depositional and erosional landforms, and tectonic structures. The region is dominated by the Thaumasia plateau, which includes central high lava plains ringed by highly deformed highlands; the plateau may comprise the ancestral center of Tharsis tectonism (Frey, 1979; Plescia and Saunders, 1982). The extensive structural deformation of the map region, which is without parallel on Mars in both complexity and diversity, occurred largely throughout the Noachian and Hesperian periods (Tanaka and Davis, 1988; Scott and Dohm, 1990a). The deformation produced small and large extensional and contractional structures (fig. 2, sheet 3) that resulted from stresses related to the formation of Tharsis (Frey, 1979; Wise and others, 1979; Plescia and Saunders, 1982; Banerdt and others, 1982, 1992; Watters and Maxwell, 1986; Tanaka and Davis, 1988; Francis, 1988; Watters, 1993; Schultz and Tanaka, 1994), from magmatic-driven uplifts, such as at Syria Planum (Tanaka and Davis, 1988; Dohm and others, 1998; Dohm and Tanaka, 1999) and central Valles Marineris (Dohm and others, 1998, Dohm and Tanaka, 1999), and from the Argyre impact (Wilhelms, 1973; Scott and Tanaka, 1986). In addition, volcanic, eolian, and fluvial processes have highly modified older surfaces in the map region. Local volcanic and tectonic activity often accompanied episodes of valley formation. Our mapping depicts and describes the diverse terrains and complex geologic history of this unique ancient tectonic region of Mars. The geologic (sheet 1), paleotectonic (sheet 2), and paleoerosional (sheet 3) maps of the Thaumasia region were compiled on a Viking 1:5,000,000-scale digital photomosaic base. The base is a combination of four quadrangles: the southeast part of Phoenicis Lacus (MC–17), most of the southern half of Coprates (MC–18), a large part of Thaumasia (MC–25), and the northwest margin of Argyre (MC–26). The medium-resolution Viking images used for mapping and base preparation also formed the basis of the 1:2,000,000 scale subquadrangle series. Earlier geologic maps of all or parts of the region include: (1) maps of the Phoenicis Lacus, Coprates, Thaumasia, and Argyre quadrangles at 1:5,000,000 scale based mainly on Mariner 9 images (respectively, Masursky and others, 1978; McCauley, 1978; McGill, 1978; and Hodges, 1980), (2) the global map of Mars at 1:25,000,000 (Scott and Carr, 1978) compiled largely from the 1:5,000,000 scale geologic maps, (3) maps showing lava flows in the Tharsis region at 1:2,000,000 scale compiled from Viking and Mariner 9 images (Scott, 1981; Scott and Tanaka, 1981a, b; Scott and others, 1981), (4) the map of the western equatorial region of Mars at 1:15,000,000 scale based on Viking images (Scott and Tanaka, 1986), and (5) the map of the Valles Marineris region at 1:2,000,000 scale compiled from Viking images (Witbeck and others, 1991). The previous maps have described the overall geology and geomorphology of the region but have not unraveled the detailed stratigraphy and complex evolution of this unique and geologically diverse martian province. The main purpose of this comprehensive mapping project is to reconstruct the stratigraphic, structural, and erosional histories of the Thaumasia region. The region is the last major province of the Tharsis region to undergo detailed structural mapping using Viking images; its history is essential to documenting the overall tectonic history of Tharsis. Other provinces of Tharsis that have been structurally mapped include Syria Planum (Tanaka and Davis, 1988), Tempe Terra and Ulysses Patera (Scott and Dohm, 1990b), and Alba Patera (Tanaka, 1990). Another primary mapping objective is to determine the region's volcanic history and assess the relations among fault systems and volcanoes (Wise and others, 1979; Scott and Tanaka, 1980; Whitford-Stark, 1982; Scott and Dohm, 1990a). A secondary mapping objective is to determine the distribution and ages of valleys. In our study, we incorporated detailed photogeologic mapping, comprehensive crater statistics (table 1), and geologic, paleotectonic, and paleoerosional Geographic Information System (GIS) databases. Sheets 1–3 show geologic units, faults and other significant structures, and valleys, respectively. To help unravel the complex geologic history of the Thaumasia region, we transferred the highly detailed geologic unit, paleotectonic, and paleoerosional information of sheets 1–3 into a multilayered GIS database for comparative analysis. The geologic information was transferred from hard copy into a digital format by scanning at 25 micron resolution on a drum scanner. The 2-bit scanned image was then converted to an x,y coordinate system using ARC/INFO's vectorization routine. The geologic unit, structural, and erosional data were transformed into the original map projection, Lambert Conformal. The average transformation root mean square error was 0.25 km (acceptable for the Thaumasia map base at 1:5,000,000 scale). After transformation, the features were properly attributed and tediously checked. Once digitized, the map data can be transformed into any map projection depending on the type of data analysis. For example, the equal-area sinusoidal projection was used for determining the precise area of geologic units (table 1). In addition to the geologic map and its attendant stratigraphic section, correlation chart, and description of map units, we include text sections that clarify the histories and temporal, spatial, and causal relations of the various geologic units and landforms of the Thaumasia region. The geologic summary section defines the sequence of major geologic events.

IMAP↗

USGS2008

The coral reef of South Moloka'i, Hawai'i— Portrait of a sediment-threatened fringing reef

Moloka‘i, with the most extensive coral reef in the main Hawaiian Islands, is especially sacred to Hina, the Goddess of the Moon. As Hinaalo, she is the Mother of the Hawaiian people; as Hinapuku‘a, she is the Goddess of Fishermen; and in the form Hina‘opuhalako‘a, she is the Goddess who gave birth to coral, coral reefs, and all spiny marine organisms. Interdependence between the reef’s living resources, the people, and their cosmology was the basis for management of Moloka‘i’s coastal waters for over a thousand years. The ancient residents of Moloka‘i built the greatest concentration of fishponds known anywhere, but their mastery of mariculture, something needed now more than ever, was lost after near genocide from exotic Western diseases. Subsequent destruction of the native vegetation for exotic cattle, goats, pigs, sugar cane, and pineapple caused soil erosion and sedimentation on the reef flat. This masterful volume clearly documents that soil washing into the sea is the major threat to the reef today. Abandoned fishponds, choked with sediment, now act as barriers and mud traps, making damage to corals less than it would otherwise would have been. The role of mud and freshwater from land in preventing coral reef growth, clearly articulated in Charles Darwin’s first book, The Structure and Distribution of Coral Reefs, is the major theme of this book. All around the tropics, coral reefs have died from huge increases in terrestrial sedimentation that resulted from destruction of hillside forests for cash-crop agriculture and pastures in the colonial era, especially in Latin America, Asia, and the islands of the Caribbean and Indo-Pacific. It is obvious that one cannot manage the coastal zone as a unit separate from the watersheds that drain into it. Yet there has been surprisingly little comprehensive scientific study of these impacts. In this landmark volume, U.S. Geological Survey researchers and their colleagues have developed and applied a remarkably integrated approach to the reefs of Moloka‘i, combining geology, oceanography, and biology to provide an in-depth understanding of the processes that have made these reefs grow and that now limit them. They have joined old fashioned natural history of marine animals and plants with study of the geological evolution of the island, hydrology, meteorology, and land-use history, to an arsenal of new methods of remote sensing, including aerial photography, laser ranging, infrared thermal mapping, seismic reflection, in-situ instrumentation to measure chemical parameters of water quality, and direct measurements of the physical driving forces affecting them—such as wave energy, currents, sedimentation, and sediment transport. They provide a level of documentation and insight that has never been available for any reef before. A remarkable feature of this book is that it is aimed at the people of Moloka‘i to inform them of what is happening to their reef and what they might do to preserve their vital resources. The scientific data and interpretations are expressed in unusually clear and comprehensible language, free of the professional jargon that makes most technical publications impenetrable to the public that most needs to know about them, yet without loss of scientific rigor. Here readers will see clearly explained the whole path of soil loss, from the impacts of wild pigs and goats at higher elevations, deforestation of the hills for cattle pasture at lower levels, and denudation of low lands for cash crops. The resulting biological impoverishment has bared the soils, which wash away in flash storms, smothering the inshore reefs, whose growth was already limited because they had grown right up to sea level. The data in this book show that the mud doesn’t get far if it is washed into the sea during a big storm with heavy waves. Afterwards this mud keeps getting stirred up by every succeeding storm, spreading and affecting corals over wider areas until it is finally washed out of the system—and that only happens if there is no more new mud washing onto the reef. I saw this myself a few years ago in Pila‘a Bay on Kaua‘i, where a bulldozed hillside of abandoned sugar cane fields had slumped right on top of a coral reef following exceptional rains. Years later, the algae species were zoned in a way that clearly mapped the distribution of nutrients washed into the bay, most likely from fertilizers bound to the eroded soils. That pattern closely mimics, on a small scale, that shown in Moloka‘i in this volume, where the inner reef is covered with algae, zoned by species in a way that points to land-based sources of nutrients, while the outermost reef slope is still coral dominated, and the deep algae seem to indicate deep-water nutrient upwelling. What of the future? The Hawaiian Islands have been exceptionally fortunate to be spared the worst coral heatstroke death from high temperatures, at least to date. So far, the worst global warming impacts have luckily been small in this region, and the small number of people on Moloka‘i has kept population densities, and sewage pollution, low compared to the more developed islands. Nutrients from years of sugar and pineapple fertilization, and the washing of this soil onto the reefs, show clear influences on the pattern of algae on the reef. Even at very low levels of nutrients, well below that which drives algae to smother and kill coral reefs, more algae is present. Soil erosion control is therefore the key to better management of both nutrients and turbidity on Moloka‘i reefs. To that end land management actions mentioned in this book, such as suppressing wild fires and eliminating wild goats and pigs, could be made even more effective if supplemented by active erosion control using plants whose roots bind the soil effectively in place. Through all of these efforts, Hina and the people of Moloka‘i could be happy again!

Hawaii↗

USGS2007

Applying radar technology to migratory bird conservation and management: Strengthening and expanding a collaborative

Executive Summary Understanding the factors affecting migratory bird and bat populations during all three phases of their life cycle—breeding, nonbreeding, and migration—is critical to species conservation planning. This includes the need for information about these species’ responses to natural challenges, as well as information about the effects of human activities and structures. Habitats and other resources critical to migrants during passage and stopover are being destroyed, degraded, and threatened by human activities. Birds and bats are also uniquely susceptible to human use of the airspace. Wind turbines, communication and power transmission towers, and other tall structures, known to cause bird and bat mortality, are being erected or proposed in increasing numbers across the country. In addition, the potential for bird/aircraft collisions poses human safety threats. Management and regulatory agencies, conservation organizations, and industry currently lack the information they need to meet their missions and statutory responsibilities. The biological data available from various radar technologies offer a unique opportunity to learn more about the spatiotemporal distribution patterns, flight characteristics, and habitat use of “aero-fauna.” Recognizing the opportunities presented by radar technologies, the U.S. Geological Survey (USGS), the U.S. Fish and Wildlife Service (USFWS), and university partners collaborated first on individual projects and then in a broader, informal “collaborative” to coordinate their radar-related research and work together to develop the suite of products needed for conservation of birds and bats. Having produced two summary documents (Sojda and others, 2005; Ruth and others, 2005), the next objective was to convene a workshop for researchers, management and regulatory agencies, and other interested parties. The focus of this initial workshop was on strengthening the existing USGS-USFWS-university partnership and expanding the “collaborative” to include new Federal agency partners. The subject matter was centered on discussing available technologies, appropriate applications, management-related needs, and ways to strengthen collaborative research and conservation efforts. The workshop opened with presentations about the history of the “radar collaborative,” a description of the workshop objectives and focuses, and a summary of resource management and regulatory needs. Scientific presentations describing current research projects or subjects followed, given by USGS scientists, as well as scientists from other Federal agencies, academia, conservation and ornithological organizations, and a private contracting firm. Presenters addressed a wide variety of management issues including siting of wind-power facilities, bird/aircraft collisions, effects of hurricanes Katrina and Rita on bird migration, bird use of Conservation Reserve Program land, defining bird migration patterns at a broad regional scale, and associating migrant birds with their stopover habitats. Presentations described a variety of radar technologies including NEXRAD weather surveillance radar, modified mobile marine radar, military tracking radar, pencil beam radar, and dual polarization radar, as well as complementary techniques and analysis methods such as acoustic monitoring, thermal imaging, artificial intelligence, and individual-based modeling. Key issues, themes, and questions identified during the open discussions that followed fell into five main categories: (1) agency needs and challenges; (2) radar technology and applications—technical questions and issues; (3) tools and resources for managers and researchers; (4) standardization of protocols; and (5) collaborative opportunities. Participants identified the following management, regulatory, or business issues facing them which may be addressed with radar technologies: tall structures; wind turbines; identification and protection of key habitats; assessment of management activities; and bird/aircraft strikes. Participants frequently expressed the need for specific information about which radar technologies are best used for answering particular questions. User groups emphasized the importance of clear, defensible scientific information on which they can base their activities. In turn, researchers emphasized their need for clearly defined, specific questions from managers so that they can design and conduct the required research. Discussions about technical issues requiring further research and collaboration included target identity, ground-truthing, linking migrants to habitat, and standardized protocols for applied research. Workshop participants identified and endorsed a series of seven action items that would promote collaboration and begin to address key issues identified at the workshop: Action Item #1 : Establish a working subgroup to address large-scale surveillance radar standardization issues. Action Item #2 : Establish a working subgroup to address small-scale radar standardization issues. Action Item #3 : Bring management and regulatory agencies together to identify the three most important information needs for each key management issue relating to radar technologies. Action Item #4 : Develop Fact Sheet(s) to provide information about radar technology applications to migratory bird and bat conservation issues. Action Item #5 : Create a “radar collaborative” Website to provide information about radar biology applications, contacts, publications, and so forth. Action Item #6 : Formalize and expand the USGS-USFWS “radar collaborative.” Action Item #7 : Advance basic research, such as target identity and validation, which will support and improve our abilities to apply radar technologies to conservation objectives. There was considerable interest in expanding the “radar collaborative” to include those agencies, organizations, and industries represented at the workshop. It was felt that the publication of the workshop proceedings, implementation of action items, and additional future meetings or workshops will be crucial in strengthening the “radar collaborative” effort and promoting the use of these valuable technologies for conserving migratory species.

Open-File Report↗

USGS2016

Animal movement constraints improve resource selection inference in the presence of telemetry error

Multiple factors complicate the analysis of animal telemetry location data. Recent advancements address issues such as temporal autocorrelation and telemetry measurement error, but additional challenges remain. Difficulties introduced by complicated error structures or barriers to animal movement can weaken inference. We propose an approach for obtaining resource selection inference from animal location data that accounts for complicated error structures, movement constraints, and temporally autocorrelated observations. We specify a model for telemetry data observed with error conditional on unobserved true locations that reflects prior knowledge about constraints in the animal movement process. The observed telemetry data are modeled using a flexible distribution that accommodates extreme errors and complicated error structures. Although constraints to movement are often viewed as a nuisance, we use constraints to simultaneously estimate and account for telemetry error. We apply the model to simulated data, showing that it outperforms common ad hoc approaches used when confronted with measurement error and movement constraints. We then apply our framework to an Argos satellite telemetry data set on harbor seals ( Phoca vitulina ) in the Gulf of Alaska, a species that is constrained to move within the marine environment and adjacent coastlines.

Ecology↗

USGS2017

Fisheries and aquatic resources of Prairie Creek, Redwood National Park

This report synthesizes information on the status of fisheries and aquatic resources in the Prairie Creek sub-basin of Redwood Creek in Humboldt County in northern California, founded on a bibliographic search we conducted of historic and current datasets, unpublished reports, theses, and publications. The compiled Prairie Creek Fisheries Bibliography is available at https://irma.nps.gov/DataStore/. This report describes life histories and population status of the salmonid fishes, and species occurrence of non-salmonid fishes, amphibians, macroinvertebrates, and common benthic algae in Prairie Creek. We assessed habitat conditions that may limit salmonid production in relation to recovery targets established by the National Marine Fisheries Service and the State of California. Although salmon abundance has decreased from historic levels, production of juvenile salmonids in Prairie Creek is relatively stable and robust in comparison with the rest of the Redwood Creek Basin. Carrying capacity likely differs between the undisturbed upper reaches of Prairie Creek and reaches in the lower creek, the latter of which are affected by legacy impacts from timber and agricultural activities. Increased sediment supply and lack of channel structure and floodplain connection in lower Prairie Creek appear to be the greatest stressors to salmonid production. Existing datasets on aquatic resources and environmental variables are listed, and subject areas where few data are available are identified .

California↗

USGS1967

Geohydrologic reconnaissance of the Soquel-Aptos area, Santa Cruz County, California

This report summarizes existing knowledge on the geohydrology of the Soquel-Aptos area, near, and including the eastern part, of Santa Cruz, California, and outlines work necessary for making a complete appraisal of the water resources of the area. The area is underlain mostly by marine and continental sedimentary deposits of Tertiary and Quaternary age. A small section in the northeastern part of the area on the eastern side of the San Andreas fault is underlain by sedimentary and metamorphic rocks of Cretaceous or older age. Quartz diorite, probably of Cretaceous age, underlies a considerable part of the area, but crops out only in small exposures along canyon bottom south of the Zayante fault. The Soquel-Aptos area consists of two main structural blocks?one, downthrown on the northeast side of the Zayante fault; the other, upthrown on the southwest side of the fault. The main water-bearing formations in the southwestern structural block are the Santa Margarita and Purisima Formations. The Purisima, the most widespread of these units in this area, contains water under water-table and artesian conditions and furnishes water to most wells. The water-bearing character of the rocks in the northern structural block is unknown. Presently available geohydrologic data are too limited for detailed evaluation of the ground-water potential in the Soquel-Aptos area. Work needed for a detailed evaluation includes: (1) Geophysical exploration and test drilling at selected locations, (2) pumping tests of selected existing wells and possibly of specially drilled test wells, (3) study and reconnaissance measurements of spring and streamflow, (4) chemical analysis of water samples from selected wells, and (5) establishment of a program for monitoring water quality and water levels in key wells.

California↗

USGS2022

Crystal chemistry of thallium in marine ferromanganese deposits

Our understanding of the up to 7 orders of magnitude partitioning of thallium (Tl) between seawater and ferromanganese (FeMn) deposits rests upon two foundations: (1) being able to quantify the Tl(I)/Tl(III) ratio that reflects the extent of the oxidative scavenging of Tl by vernadite (δ-MnO 2 ), the principle manganate mineral in oxic and suboxic environments, and (2) being able to determine the sorption sites and bonding environments of the Tl(I) and Tl(III) complexes on vernadite. We investigated these foundations by determining the oxidation state and chemical form of Tl in FeMn crusts and nodules from the global oceans at a Tl concentration ranging from several hundred ppm (mg/kg) down to the low ppm level. Seventeen hydrogenetic crusts and eleven nodules from the Pacific, Atlantic, Arctic, and Indian Oceans and Baltic Sea were characterized by chemical analysis, X-ray diffraction, Raman spectroscopy, Mn K-edge X-ray absorption near-edge structure (XANES) spectroscopy, Tl L 3 -edge high energy-resolution XANES (HR-XANES) spectroscopy, and extended X-ray absorption fine structure (EXAFS) spectroscopy. The Tl concentration increases linearly from 1.5 to 319 ppm with the Mn/Fe ratio in Fe-vernadite from hydrogenetic crusts, whereas the percentage of Tl(III) to total Tl varies between 62 and 100% independent of both the Mn/Fe and Mn(III)/Mn(IV) ratios. The data, complemented by molecular modeling of the Tl(III) coordination and by XANES calculations, suggest that the enrichment of Tl in Fe-vernadite is driven by (1) the oxidative uptake of octahedrally coordinated Tl(III) above the vacant Mn(IV) sites and on the layer edges of the vernadite layers, and (2) the sorption of Tl(I) on the crystallographic site of Ba at the surface of the vernadite layers, which is an analogue to the surface site of K. Thus, Tl has a high affinity for vernadite regardless of its oxidation state, and the lack of correlation between Tl(III) and the Mn/Fe ratio in FeMn crusts is explained by the affinity of Tl(I) for the Ba site. The Tl concentration varies between 2 and 112 ppm in surface and buried nodules independent of the Mn/Fe ratio, and the percentage of Tl(III) varies between 0 and 100%. Nodules subjected to sediment diagenesis with replacement of layered vernadite by tunneled todorokite are depleted in Tl and have more reduced thallium. Knowledge of the complex interplay of mineralogy, surface chemical processes, and crystallographic siting is required to understand the variability of Tl concentrations, redox state, and acquisition processes by marine FeMn deposits.

ACS Earth and Space Chemistry↗

USGS2020

Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs

Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management actions (e.g., fish guidance structures) to modify routing probabilities at this location. Main Content View Larger 1 Sponsored by the Delta Science Program and the UC Davis Muir Institute ABSTRACT Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access SFEWS Volume 19 | Issue 2 | Article 4 https://doi.org/10.15447/sfews.2021v19iss2art4 * Corresponding author: rperry@usgs.gov 1 Western Fisheries Research Center US Geological Survey Cook, WA 98605 USA 2 California Water Science Center US Geological Survey Sacramento, CA 95819 USA 3 Current address: Mid-Columbia Fish and Wildlife Conservation Office Yakima Basin Program US Fish and Wildlife Service Yakima, WA 98903 USA the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management RESEARCH Effects of Tidally Varying River Flow on Entrainment of Juvenile Salmon into Sutter and Steamboat Sloughs Jason G. Romine 1,3 , Russell W. Perry* 1 , Paul R. Stumpner 2 , Aaron R. Blake 2 , Jon R. Burau 2 2 VOLUME 19, ISSUE 2, ARTICLE 4 actions (e.g., fish guidance structures) to modify routing probabilities at this location. KEY WORDS Telemetry, juvenile salmon, migration routing, survival INTRODUCTION The Sacramento–San Joaquin River Delta (hereafter referred to as “the Delta”) is a complex series of channels and embayments in west central California of the United States. The Delta has undergone drastic transformation through construction of dikes, levees, reclaimed land, dredged canals and cuts, and water export projects (Nichols et al. 1986). The loss of habitat coupled with introduction of non-native piscivorous fishes has led to the decline of several salmonid stocks that utilize the Delta (Lindley 2009; National Marine Fisheries Service 2014). The physical complexity of the Delta poses significant challenges for understanding how juvenile salmon negotiate the complex channel network and survive in different migration routes. Yet such information is critical for understanding how water-management actions, such as operation of water diversions, influence survival of juvenile salmon. Through-Delta survival of juvenile Chinook Salmon that emigrate from the Sacramento River ranges from 10% to 80%, depending on river flow and migration route (Perry et al. 2018). The Delta can be broken down into four primary routes: (1) Sacramento River, (2) Steamboat and Sutter sloughs, (3) Georgiana Slough, and (4) Delta Cross Channel (DCC). Fish that remain in the Sacramento River consistently have the highest survival (Perry et al. 2010, 2013, 2018). However, fish that enter the interior Delta—the region to the south of the Sacramento River (Figure 1)—have the lowest survival among all routes and survive at less than half the rate of fish in the Sacramento River, likely as a result of longer migration times and exposure to non-native predators (Newman and Brandes 2010; Perry et al. 2018). On average, fish that migrate through Steamboat and Sutter sloughs exhibit survival similar to fish that remain in the Sacramento River at high flows but have lower survival at low flows (Perry et al. 2018). Because of differences in survival among migration routes, the proportion of fish that use each route affects the total survival of the population. Therefore, understanding the drivers behind fish routing in the Delta is imperative to inform management actions that help in the recovery of imperiled salmonid populations in the Central Valley. For example, Perry et al. (2013) found that total survival through the Delta could be increased by up to 7 percentage points by eliminating entrainment into Georgiana Slough and the DCC. These findings led to investigation of management actions to reduce entrainment into the DCC (Plumb et al. 2016) and Georgiana Slough (Perry et al. 2014). Both physical and non-physical barriers have been tested at the entrance to Georgiana Slough divergence (Perry et al. 2014; Romine et al. 2016). A non-physical barrier was able to reduce entrainment to the interior Delta through Georgiana Slough (Perry et al. 2014), but a floating fish-guidance structure reduced entrainment to a lesser extent (Romine et al. 2016). Research and engineering solutions to minimize entrainment have focused on the Georgiana Slough divergence, the DCC divergence, and the Old River divergence in the San Joaquin River (Buchanan et al. 2013; SJRG 2013). However, there has been little focus on understanding fish routing dynamics at other primary river junctions in the Delta, such as Sutter and Steamboat sloughs. Sutter and Steamboat sloughs diverge from the Sacramento about 10 km upstream from the DCC and Georgiana slough, and represent the first major junction that juvenile salmon encounter as they enter the Delta from the Sacramento River ( Figure 1 ). Because Sutter and Steamboat sloughs are upstream of the entrance to the interior Delta via the DCC and Georgiana Slough (Figure 1), juvenile salmon that enter Sutter and Steamboat sloughs avoid entrainment into the interior Delta where survival is low. Thus, management actions to increase entrainment could increase overall.

Sacramento–San Joaquin Delta↗

USGS2010

Organic petrology of subbituminous carbonaceous shale samples from Chalāw, Kabul Province, Afghanistan: Considerations for paleoenvironment and energy resource potential

Neogene (?) subbituminous carbonaceous shale deposits from Chalāw, Afghanistan, were investigated through organic petrology techniques and standard coal analyses to determine paleoenvironment and potential for resource utilization. The Chalāw deposit, approximately 30 km southeast of Kabul, currently is exploited for brick making and domestic heating and cooking. Three multiple-bench channel samples of the mined bed at Chalāw were collected and evaluated. The presence of significant huminite (ranging from 0.2 to 59.0 vol.%, mineral-inclusive basis) is suggestive of a terrestrial lignin-rich precursor plant material. Measured reflectance values of 0.38–0.55% indicate subbituminous rank. This rank suggests burial depths of approximately 1500 m and maximum temperatures of approximately 50 °C. Structured liptinite macerals generally are absent except for some fluorescing morphologies interpreted to be poorly-preserved root cork suberinite. Sponge spicule bioliths including gemmoscleres and megascleres are common. These petrographic observations, in addition to high mineral matter content (33 to > 95 vol.%), medium to high sulfur content (2.1–11.5 wt.%, dry basis; db), and the presence of common gastropod? shell fragments and an aragonite-needle chalk bed are consistent with, but not directly indicative of, a marginal marine or estuarine mangrove depositional environment. However, additional data are necessary to confirm this hypothesis and deposition in a freshwater environment cannot be ruled out at this time. Commercial-scale development and utilization of the Chalāw deposit as a thermal fuel resource may be possible using a fluidized bed combustion system which could accept the low-quality mine product currently produced. Samples examined herein contain high-ash yield (45–90 wt.%, db), high total moisture content (17–39 wt.%), low calorific value (980–6860 Btu/lb, m,mmf), and have poor agglomerating properties (FSI = 0), consistent with fuels utilized in fluidized bed combustors. However, delineation of the extent of the deposit through field investigation will be necessary to make a quantified resource estimate for mine planning.

Kabul Province↗

USGS2002

High-Resolution Multichannel Seismic-Reflection Data Acquired in the Northern Gulf of Mexico, 1998-99

During June 1998 and April 1999, the U.S. Geological Survey (USGS) conducted two research cruises in the northern Gulf of Mexico to acquire high-resolution seismic reflection data across the upper and middle continental slope as part of an investigation of the seismic character, distribution, and potential effects of naturally-occurring marine gas hydrates and related free gas within the gas hydrate stability zone. Over 1600 km of two-dimensional multichannel seismic reflection profiles were acquired during these two cruises. The specific objectives of this investigation are (a) to produce high-resolution images of the gas hydrate stability zone; (b) to study the distribution and character of potential seafloor failures and their relationship to known and inferred gas hydrate deposits; (c) to look at systematic variations in subsurface structure in gas hydrate and non-hydrate areas; and (d) to estimate, if possible, the amounts of hydrates present within the gas hydrate stability zone. The multichannel profiles provide high-quality images with approximately 5 meters of vertical resolution and up to 2 km of penetration. This report gives an overview of the acquisition and data processing of the multichannel seismic reflection profiles and provides references and links to reports with more detailed information. Geologic interpretations of these seismic profiles regarding gas hydrate occurrence and distribution within the study areas of this investigation are given in Cooper and Hart (2002).

Open-File Report↗

USGS1976

Shallow sedimentary framework of Georges Bank

Two thousand nine hundred kilometers of minisparker data were collected on Georges Bank by the United States Geological Survey during October of 1975. Several sedimentary features have been observed in the data, The bank is recognized as a compound feature resulting from erosion of Tertiary coastal-plain strata followed by deposition of an extensive sediment wedge on the western flank of the cuesta. Marine planation (probably Late Pleistocene) truncated this bank morphology producing an erosion surface roughly paralleling the present sea floor. The truncated bank surface is blanketed by a veneer of complex Late Pleistocene drift which masks underlying features and is being reworked by modern processes. Present bank morphology is inferred-to be arather recent development. A proper understanding of the significance of complex bank sediments with respect to the potential geologic hazards of drilling or placement of bottom. supported structures necessitates a more detailed seismic reflection program, in conjunction with geotechnical analysis of core-samples.

Open-File Report↗

USGS1964

Chemical quality of surface waters and sedimentation in the Saline River basin, Kansas

This report gives the results of an investigation of the sediment and dissolved minerals that are transported by the Saline River and its tributaries. The Saline River basin is in western and central Kansas; it is long and narrow and covers 3,420 square miles of rolling plains, which is broken in some places by escarpments and small areas of badlands. In the western part the uppermost bedrock consists predominantly of calcareous elastic sedimentary rocks of continental origin of Pliocene age and in most places is covered by eolian deposits of Pleistocene and Recent age. In the central part the ex posed bedrock consists predominantly of calcareous marine sedimentary rocks of Late Cretaceous age. In the eastern part the exposed bedrock consists mainly of noncalcareous continental and littoral elastic sedimentary rocks of Early Cretaceous and Permian age. Fluvial deposits are in the valleys, and eolian materials are present over much of the uplands. Average precipitation increases rather uniformly from about 18 inches per year in the west to almost 28 inches per year in the east. Runoff is not affected by irrigation nor regulated by large structures, but it is closely related to precipitation. Average runoff increases from less than 0.2 inch per year in the west to more than 1.5 inches per year in the east. Aquifers of the flood-plain and terrace deposits and of the Cretaceous Dakota Sandstone are the major sources of ground-water accretion to the streams. In the upper reaches of the Saline River, the water is only slightly mineralized; during the period of record the specific conductance near Wakeeney never exceeded 750 micromhos per centimeter. In the lower reaches, however, the water is slightly mineralized during periods of high flow and is highly mineralized during periods of low flow; the specific conductance near Russell exceeded 1,500 micromhos per centimeter more than 80 percent of the time. Near Russell, near Wilson, and at Tescott the water is of the calcium bicarbonate type when the specific conductance is less than about 1,000 micromhos per centimeter, but it is of the sodium chloride type when the specific conductance is more than about 1,500 micromhos per centimeter. The water is off the calcium bicarbonate, sodium bicarbonate, or sodium chloride type when the conductance is between 1,000 and 1,500 micromhos per centimeter. Most of the increase in mineralization of the water is caused by inflow of highly mineralized ground water. The ground-water inflow was estimated to be 22 percent of the total streamflow at Tescott in 1948 and 60 percent in 1952. Mineralization increases and water quality deteriorates progressively downstream along nearly the entire Saline River, especially in the part of the area directly underlain by the Dakota Sandstone between the vicinities of Fairport and Wilson: sodium and chloride are the principal constituents of water contributed by the Dakota. The total percentage of the salt in the Saline River that comes from oil-field brines is considered to be small. The water in the upper Saline River is of good quality for domestic use except that it is hard; the water in the lower Saline River is of poor quality for domestic use because most of the time it is highly mineralized, is hard, and contains high concentrations of chloride and sulfate. In the upper reaches of the river, the water is of good quality for irrigation. In the lower reaches, if the water were impounded in a reservoir, it would be of good quality for irrigation during years of high flow and of very poor quality during years of low flow. The water in the lower reaches is of poor quality for industrial use because it is highly mineralized most of the tinge. Relations of suspended-sediment discharge to water discharge were used with the long-term streamflow duration curves to compute the long-term aver age suspended-sediment discharges and concentrations at five indications. Sediment discharge is closely related to runoff. S

Water Supply Paper↗

USGS2020

Structural impacts, carbon losses, and regeneration in mangrove wetlands after two hurricanes on St. John, U.S. Virgin Islands

Hurricanes Irma and Maria ravaged the mangroves of St. John, U.S. Virgin Islands, in 2017. Basal area losses were large (63–100%) and storm losses of carbon associated with aboveground biomass amounted to 11.9–43.5 Mg C/ha. Carbon biomass of dead standing trees increased 8.1–18.3 Mg C/ha among sites, and carbon in coarse woody debris on the forest floor increased 1.9–18.2 Mg C/ha, with effects varying by mangrove typology. While St. John has only ~45 ha of mangroves, they exist as isolated basins, salt ponds, and fringe mangroves; the latter sometimes support diverse marine communities. Salt pond and fringe mangroves had proportionately more organic carbon (46.3 Mg C/ha) than inorganic carbon (1.1 Mg C/ha) in soils than isolated basins. Soil organic carbon was also appreciable in isolated basins (30.8 Mg C/ha) but was matched by inorganic C (36.7 Mg C/ha), possibly due to adjacent land use history (e.g., road construction), previous storm overwash, or geomorphology. Soil nitrogen stocks were low across all typologies. Mangroves had limited regeneration 26 months after the storms, and recovery on St. John may be hindered by pre-storm hydrologic change in some stands, and potential genetic bottlenecks and lack of propagule sources for expedient recovery in all stands.

St Johns↗

USGS2020

An international code comparison study on coupled thermal, hydrologic and geomechanical processes of natural gas hydrate-bearing sediments

Geologic reservoirs containing gas hydrate occur beneath permafrost environments and within marine continental slope sediments, representing a potentially vast natural gas source. Numerical simulators provide scientists and engineers with tools for understanding how production efficiency depends on the numerous, interdependent (coupled) processes associated with potential production strategies for these gas hydrate reservoirs. Confidence in the modeling and forecasting abilities of these gas hydrate reservoir simulators (GHRSs) grows with successful comparisons against laboratory and field test results, but such results are rare, particularly in natural settings. The hydrate community recognized another approach to building confidence in the GHRS: comparing simulation results between independently developed and executed computer codes on structured problems specifically tailored to the interdependent processes relevant for gas hydrate-bearing systems. The United States Department of Energy, National Energy Technology Laboratory (DOE/NETL), sponsored the first international gas hydrate code comparison study, IGHCCS1, in the early 2000s. IGHCCS1 focused on coupled thermal and hydrologic processes associated with producing gas hydrates from geologic reservoirs via depressurization and thermal stimulation. Subsequently, GHRSs have advanced to model more complex production technologies and incorporate geomechanical processes into the existing framework of coupled thermal and hydrologic modeling. This paper contributes to the validation of these recent GHRS developments by providing results from a second GHRS code comparison study, IGHCCS2, also sponsored by DOE/NETL. IGHCCS2 includes participants from an international collection of universities, research institutes, industry, national laboratories, and national geologic surveys. Study participants developed a series of five benchmark problems principally involving gas hydrate processes with geomechanical components. The five problems range from simple geometries with analytical solutions to a representation of the world’s first offshore production test of methane hydrates, which was conducted with the depressurization method off the coast of Japan. To identify strengths and limitations in the various GHRSs, study participants submitted solutions for the benchmark problems and discussed differing results via teleconferences. The GHRSs evolved over the course of IGHCCS2 as researchers modified their simulators to reflect new insights, lessons learned, and suggested performance enhancements. The five benchmark problems, final sample solutions, and lessons learned that are presented here document the study outcomes and serve as a reference guide for developing and testing gas hydrate reservoir simulators.

Journal of Marine and Petroleum Geology↗