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Cross-continental evaluation of landscape-scale drivers and their impacts to fluvial fishes: Understanding frequency and severity to improve fish conservation in Europe and the United States

Fluvial fishes are threatened globally from intensive human landscape stressors degrading aquatic ecosystems. However, impacts vary regionally, as stressors and natural environmental factors differ between ecoregions and continents. To date, a comparison of fish responses to landscape stressors over continents is lacking, limiting understanding of consistency of impacts and hampering efficiencies in conserving fishes over large regions. This study addresses these shortcomings through a novel, integrative assessment of fluvial fishes throughout Europe and the conterminous United States. Using large-scale datasets, including information on fish assemblages from more than 30,000 locations on both continents, we identified threshold responses of fishes summarized by functional traits to landscape stressors including agriculture, pasture, urban area, road crossings, and human population density. After summarizing stressors by catchment unit (local and network) and constraining analyses by stream size (creeks vs. rivers), we analyzed stressor frequency (number of significant thresholds) and stressor severity (value of identified thresholds) within ecoregions across Europe and the United States. We document hundreds of responses of fish metrics to multi-scale stressors in ecoregions across two continents, providing rich findings to aid in understanding and comparing threats to fishes across the study regions. Collectively, we found that lithophilic species and, as expected, intolerant species are most sensitive to stressors in both continents, while migratory and rheophilic species are similarly strongly affected in the United States. Also, urban land use and human population density were most frequently associated with declines in fish assemblages, underscoring the pervasiveness of these stressors in both continents. This study offers an unprecedented comparison of landscape stressor effects on fluvial fishes in a consistent and comparable manner, supporting conservation of freshwater habitats in both continents and worldwide.

Europe

Assessment of soil-gas and soil contamination at the Old Metal Workshop Hog Farm Area, Fort Gordon, Georgia, 2009-2010

Soil gas and soil were assessed for contaminants at the Old Metal Workshop Hog Farm Area at Fort Gordon, Georgia, from October 2009 to September 2010. The assessment included delineating organic contaminants present in soil-gas and inorganic contaminants present in soil samples collected from the area estimated to be the Old Metal Workshop Hog Farm Area. This assessment was conducted to provide environmental contamination data to Fort Gordon personnel pursuant to requirements for the Resource Conservation and Recovery Act Part B Hazardous Waste Permit process. All soil-gas samplers contained total petroleum hydrocarbons above the method detection level. The highest total petroleum hydrocarbon mass detected was 121.32 micrograms in a soil-gas sampler from the western corner of the Old Metal Workshop Hog Farm Area along Sawmill Road. The highest undecane mass detected was 73.28 micrograms at the same location as the highest total petroleum hydrocarbon mass. Some soil-gas samplers detected toluene mass greater than the method detection level of 0.02 microgram; the highest detection of toluene mass was 0.07 microgram. Some soil-gas samplers were installed in areas of high-contaminant mass to assess for explosives and chemical agents. Explosives or chemical agents were not detected above their respective method detection levels for all soil-gas samplers installed. Inorganic concentrations in five soil samples collected did not exceed regional screening levels established by the U.S. Environmental Protection Agency. Barium concentrations, however, were up to eight times higher than the background concentrations reported in similar Coastal Plain sediments of South Carolina.

Open-File Report

Assessment of soil-gas, surface-water, and soil contamination at the Installation Railhead, Fort Gordon, Georgia, 2008-2009

The U.S. Geological Survey, in cooperation with the U.S. Department of the Army Environmental and Natural Resources Management Office of the U.S. Army Signal Center and Fort Gordon, assessed soil gas, surface water, and soil for contaminants at the Installation Railhead (IR) at Fort Gordon, Georgia, from October 2008 to September 2009. The assessment included delineation of organic contaminants present in soil-gas samples beneath the IR, and in a surface-water sample collected from an unnamed tributary to Marcum Branch in the western part of the IR. Inorganic contaminants were determined in a surface-water sample and in soil samples. This assessment was conducted to provide environmental contamination data to Fort Gordon personnel pursuant to requirements of the Resource Conservation and Recovery Act Part B Hazardous Waste Permit process. Soil-gas samples collected within a localized area on the western part of the IR contained total petroleum hydrocarbons; benzene, toluene, ethylbenzene, and total xylenes (referred to as BTEX); and naphthalene above the method detection level. These soil-gas samples were collected where buildings had previously stood. Soil-gas samples collected within a localized area contained perchloroethylene (PCE). These samples were collected where buildings 2410 and 2405 had been. Chloroform and toluene were detected in a surface-water sample collected from an unnamed tributary to Marcum Branch but at concentrations below the National Primary Drinking Water Standard maximum contaminant level (MCL) for each compound. Iron was detected in the surface-water sample at 686 micrograms per liter (ug/L) and exceeded the National Secondary Drinking Water Standard MCL for iron. Metal concentrations in composite soil samples collected at three locations from land surface to a depth of 6 inches did not exceed the U.S. Environmental Protection Agency Regional Screening Levels for industrial soil.

Georgia

Using hair cortisol to assess physiological stress in Alaska polar bears

The concentration of cortisol in hair (HCC) of polar bears (Ursus maritimus) may provide a retrospective view of physiological stress they experience and a link to their response to environmental change. To understand this relationship, we assayed HCC from polar bears captured in the Alaska Beaufort, Bering and Chukchi seas during 1983–1989 and 2004–2016. Cortisol accumulated in hair through summer and autumn and into the subsequent winter. HCC was similar between adult males and adult females. No difference in HCC across regions suggested all bears responded similarly to the environment. HCC in spring was elevated following years with a high winter Arctic Oscillation index and highly variable wind speed. HCC increased non-linearly with increasing duration of the continental shelf summer open water period up to 50 days and then decreased. HCC of spring samples declined with increasing body size, indicating that the stress response was more active in smaller bears or those in poor body condition. HCC of spring samples was greater and more variable in 2004–2006 than during either 1983–1989 or 2008–2016, and significantly so for females with 1st year cubs and subadult females. Elevated HCC in 2004–2006 coincided with years of reduced survival of southern Beaufort Sea polar bears and suggests that unidentified environmental perturbations impacted Alaska polar bears. Because HCC may be obtained by relatively non-invasive means, it has potential use for assessing polar bear populations that are difficult to study by capturing. Hence, information gained from HCC can inform polar bear conservation, especially on the vulnerability of subadult females and adult females with new cubs, and possible future environmental perturbations impacts on bear physiology.

Alaska

Spatial and temporal variation of stream chemistry associated with contrasting geology and land-use patterns in the Chesapeake Bay watershed—Summary of results from Smith Creek, Virginia; Upper Chester River, Maryland; Conewago Creek, Pennsylvania; and Difficult Run, Virginia, 2010–2013

Despite widespread and ongoing implementation of conservation practices throughout the Chesapeake Bay watershed, water quality continues to be degraded by excess sediment and nutrient inputs. While the Chesapeake Bay Program has developed and maintains a large-scale and long-term monitoring network to detect improvements in water quality throughout the watershed, fewer resources have been allocated for monitoring smaller watersheds, even though water-quality improvements that may result from the implementation of conservation practices are likely to be first detected at smaller watershed scales. In 2010, the U.S. Geological Survey partnered with the U.S. Environmental Protection Agency and the U.S. Department of Agriculture to initiate water-quality monitoring in four selected small watersheds that were targeted for increased implementation of conservation practices. Smith Creek watershed is an agricultural watershed in the Shenandoah Valley of Virginia that is dominated by cattle and poultry production, and the Upper Chester River watershed is an agricultural watershed on the Eastern Shore of Maryland that is dominated by row-cropping activities. The Conewago Creek watershed is an agricultural watershed in southeastern Pennsylvania that is characterized by mixed agricultural activities. The fourth watershed, Difficult Run, is a suburban watershed in northern Virginia that is dominated by medium density residential development. The objective of this study was to investigate spatial and temporal variations in water chemistry and suspended sediment in these four relatively small watersheds that represent a range of land-use patterns and underlying geology to (1) characterize current water-quality conditions in these watersheds, and (2) identify the dominant sources, sinks, and transport processes in each watershed. The general study design involved two components. The first included intensive routine water-quality monitoring at an existing streamgage within each study area (including continuous water-quality monitoring as well as discrete water-quality sampling) to develop a detailed understanding of the temporal and hydrologic variability in stream chemistry and sediment transport in each watershed. The second component involved extensive water-quality monitoring at various sites throughout each watershed to develop a detailed understanding of spatial patterns. Both components were used to improve understanding of sources and transport processes affecting stream chemistry, including nutrients and suspended sediments, and their implications for detecting long-term trends related to best management practices. This report summarizes the results of monitoring that was performed from April 2010 through September 2013. Individual Small Watershed Summaries Summaries for each of the four small watersheds are presented below. Each watershed has a more descriptive and detailed section in the report, but these summaries may be particularly useful for some watershed managers and stakeholders desiring slightly less technical detail. Smith Creek Smith Creek is a 105.39-mi 2 watershed within the Shenandoah Valley that drains to the North Fork Shenandoah River. The long-term Smith Creek base-flow index is 72.3 percent, indicating that on average, approximately 72 percent of Smith Creek flow was base flow, which suggests that Smith Creek streamflow is dominated by groundwater discharge rather than stormwater runoff. A series of cluster and principal components analyses demonstrated that the majority of the variability in Smith Creek water quality could be attributed to hydrologic and seasonal variability. Statistically significant positive correlations with flow were observed for turbidity, suspended sediments, total nitrogen, ammonium, orthophosphate, iron, total phosphorus, and the ratio of calcium to magnesium. Statistically significant inverse correlations with flow were observed for specific conductance, magnesium, δ 15 N of nitrate, pH, bicarbonate, calcium, and δ 18 O of nitrate. Of particular note, flow and nitrate were not statistically significantly correlated, likely because of the relatively complex concentration-discharge relationship observed in continuous and discrete datasets. Statistically significant seasonal patterns were observed for numerous water-quality constituents: water temperature, turbidity, orthophosphate, total phosphorus, suspended-sediment concentration, and silica were higher during the warm season, but pH, dissolved oxygen, and sulfate were higher during the cool season. Surrogate regression models were developed to compute sediment and nutrient loads in Smith Creek using the continuous water-quality monitors. The mean Smith Creek in-stream sediment load was approximately 6,900 tons per year, with nearly 90 percent of the sediment load over the 3-year study period contributed during the eight largest storm events during that period. The Smith Creek total phosphorus load was approximately 21,000 pounds of phosphorus per year, with the majority of the load contributed during stormflow periods, although a substantial phosphorus load still occurs during base-flow conditions. The Smith Creek total nitrogen load was approximately 400,000 pounds per year, with total nitrogen accumulation less dominated by stormflow contributions (as was the case for sediment and total phosphorus) and strongly affected by base-flow export of nitrogen from the basin. Extensive water-quality monitoring throughout the Smith Creek watershed revealed how the complex geology and hydrology interacted to result in variable water chemistry. During relatively dry and low base-flow periods, much of the discharge in Smith Creek was contributed by a single dominant spring—Lacey Spring. During wetter base-flow periods, the flows in Smith Creek were largely generated by a mixture of headwater springs and forested mountain tributaries with very different geochemical composition. The headwater springs generally issued from limestone bedrock and were characterized as having relatively high nitrate, specific conductance, calcium, and magnesium, as well as relatively low concentrations of phosphorus, ammonium, iron, and manganese. The undeveloped, high-gradient, forested mountain sites were generally characterized by low ionic strength waters with low nutrient concentrations. Nitrate isotope data from the limestone springs generally were consistent with manure-derived nitrogen sources (such as cattle and poultry), although the possibility of other mixed sources cannot be excluded. Nitrate isotope data from the undeveloped, high-gradient forested mountain sites were more consistent with nitrogen from undisturbed soils, atmospheric deposition, or nitrogen fixation. Regardless of the nitrogen source, oxygen isotope data indicate that the nitrate was largely a result of nitrification. Land-use data indicate that manure sources of nitrogen dominated watershed nitrogen inputs. Phosphorus sources were less well studied. The presence of a single point-source discharge near the town of New Market contributed the majority of the phosphorus to Smith Creek under base-flow conditions, but nonpoint sources of phosphorus dominated the loading to Smith Creek during stormflow periods. Implementation of conservation practices increased in the Smith Creek watershed during the study period, and even though a broad range of practice types was implemented, the most common practices included stream fencing (for cattle exclusion), the development of nutrient management plans, conservation crop rotation, and the planting of cover crops. While the implementation of these conservation practices is encouraging, results indicate small increases in nitrate concentrations at the streamgage over the last 29 years, concurrent with small decreases in nitrate fluxes. It will likely be years before the cumulative effect of these practices can be detected in the Smith Creek water quality, and the magnitude of the effect of these conservation practices detected in Smith Creek will depend largely on whether nutrient loading (of manure and commercial fertilizer) is reduced over time. Upper Chester River The Upper Chester River watershed includes the 36-square-mile (mi 2 ) watershed area around several nontidal tributaries that drain into the tidal Chester River. The streamgage is on Chesterville Branch, the largest nontidal tributary (approximately 6.12 mi 2 ) and is the site for continuous water-quality monitoring for this project. The base-flow index at Chesterville Branch is about 72 percent and indicates that, as in most of the Coastal Plain, groundwater is the greatest contributor to streamflow. As such, more than 90 percent of the nitrogen in the stream is in the form of nitrate from groundwater. Continuous and discrete data collected at Chesterville Branch show the effects of streamflow and season on water quality. Significantly positive correlations with flow were observed for ammonium, dissolved and total phosphorus, sediment, and turbidity as runoff carried these constituents from the land surface into Chesterville Branch. Other constituents that increased significantly with flow include potassium, sulfate, iron, and manganese, which are likely contributed from near-stream areas and ponds with high organic-matter content. Total nitrogen, pH, and specific conductance, along with chemical constituents associated with groundwater inputs including nitrate, calcium, ratio of calcium to magnesium, silica, bicarbonate, and sodium, were negatively correlated with flow because concentrations of these constituents were diluted by runoff. Seasonal differences in water chemistry, which are most likely related to increased biologic effects on the uptake and release of chemicals in the stream and near-stream areas, also were observed. Water temperature, orthophosphate, δ 15 N of nitrate, bicarbonate, sodium, and the ratio of sodium to chloride were higher during the warm season, and dissolved oxygen, total nitrogen, nitrate, magnesium, sulfate, and manganese were higher during the cool season. Surrogate-regression models developed by using continuous water-quality data showed that the annual sediment load for the 2013 water year was about 2,600 tons, with more than 90 percent of this sediment contributed during two storms. The total phosphorus load in 2013 was about 13,000 pounds with more than 90 percent contributed during the same two storms as sediment. The load of total nitrogen, 140,000 pounds, accumulated steadily throughout the 2013 water year as nitrate in groundwater continuously discharged into the stream. The same two large storms that contributed 90 percent of the suspended-sediment and total phosphorus load only contributed about 20 percent of the annual total nitrogen load. Extensive water-quality monitoring of stream base flow throughout the Upper Chester River watershed identified how differences in land use and hydrogeology affected water chemistry. In parts of the watershed with well-drained soil and thick sandy aquifer sediments, concentrations of nitrate and other chemicals associated with fertilizer and lime application increased in streams as agricultural land use increased. More than 90 percent of the nitrogen in streams from these areas was in the form of nitrate, and concentrations ranged from about 5 milligrams per liter (mg/L) to 8 mg/L as nitrogen in the two largest tributaries. Stream nitrate concentrations were about 1 mg/L as nitrogen where soils were more poorly drained, the surficial aquifer sediments were thinner, and forests and wetlands were more widespread than agriculture. Nitrate isotope data were consistent with inorganic fertilizers ± atmospheric deposition and N 2 fixation as sources of nitrogen, and with nitrification as the dominant nitrate-forming process. Nitrate reduction was indicated by elevated δ 15 N and δ 18 O values in some samples from streams draining watersheds with poorly drained soils. An analysis of land-use data and SPARROW modeling input data attributed almost 90 percent of the nitrogen sources in the Upper Chester River watershed to inorganic fertilizer and fixation of atmospheric nitrogen by legumes, which is in agreement with the isotopic characteristics of nitrate in this watershed. Local sources of manure are limited in this area. Total phosphorus concentrations during base flow ranged from below detection to about 0.2 mg/L. Stream phosphorus concentrations during base flow were generally lower than those measured during storms because most phosphorus transport likely occurs as phosphorus attached to sediment particles during runoff. Because manure is not widely used in this area, the major source of phosphorus is likely fertilizer. The implementation of conservation practices in the Upper Chester River watershed increased substantially during the study period, with a total implementation of 1,194 U.S. Department of Agriculture-compliant practices. The most frequently used practices were oriented towards nutrient and sediment control, including cover crops, nutrient management planning, conservation crop rotation, conservation tillage, and irrigation management. The current Chesapeake Bay model for this area predicts that implementation of best management practices should result in a 13-percent decrease in overall delivery of nitrogen to the Upper Chester River. Because most nitrogen travels through the groundwater system for years to decades before being discharged to streams, the time period of monitoring was not sufficient to see the effects of these practices on water quality. The magnitude of the effect that may eventually be detected will depend on the degree to which nitrate leaching into the groundwater system is reduced over time. Loadings of phosphorus and sediment are primarily transported during large runoff events and are difficult to control and analyze for trends because of their timing and episodic nature. Conewago Creek Conewago Creek has two primary monitoring locations—one near the middle of the 47-mi 2 watershed and the other near the outlet just upstream of the Susquehanna River. The base-flow index was 47.3 percent for 2012–2013, indicating that on average, approximately 53 percent of the streamflow in Conewago Creek exited the watershed as surface flow, which suggests that the stormwater runoff was somewhat greater than groundwater discharge (base flow). A series of cluster and principal components analyses demonstrated that the majority of the variability in the Conewago Creek water quality could be attributed to hydrologic and seasonal variability. Statistically significant positive correlations with flow were observed at both monitoring sites for ammonium, total phosphorus, orthophosphate, iron, and manganese; additionally, at the upstream monitoring station, total nitrogen demonstrated a statistically significant positive correlation with flow. Statistically significant inverse correlations with flow were observed at both sites for water temperature, specific conductance (at the downstream site only), sulfate, chloride, calcium, and magnesium. Statistically significant seasonal patterns were observed for several water-quality constituents. Water temperature, phosphorus (upstream site only), and orthophosphate were higher during the warm season, and nitrate and total nitrogen (upstream site only) were higher during the cool season. Surrogate regression models were developed to compute sediment and nutrient load in Conewago Creek by using the continuous water-quality monitors and water-quality samples. Conewago Creek sediment load was approximately 9,900 tons in 2012 and approximately 18,900 tons in 2013, with nearly 80 percent of the sediment load in 2013 contributed by the three largest storm events. Annual total nitrogen loads could not be estimated due to poor model performance. The addition of continued monitoring or a continuously recording nitrate sensor could improve estimates of total nitrogen loads. During 2012 and 2013, phosphorus loads in Conewago Creek were approximately 50,000 pounds in each year. Combining data from one high-flow synoptic sampling with the data from routine sampling revealed how the geology and hydrology interact to result in variable water chemistry throughout the Conewago Creek watershed. The areas above the upstream gage in the headwaters are generally underlain by forested non-carbonate bedrock and are characterized by relatively low nitrate, specific conductance, calcium, and magnesium, as well as relatively low concentrations of phosphorus, ammonium, iron, and manganese. The more developed, agricultural areas below the upstream site were generally characterized by higher ionic strength waters with higher nutrient and metal concentrations. An analysis of land-use data and SPAtially Referenced Regressions On Watershed (SPARROW) modeling data indicates that manure sources of nitrogen dominate the input of nitrogen to the watershed. Implementation of conservation practices increased in the Conewago Creek watershed during the study period, and while a broad range of practice types were implemented, the most common practices included residue and tillage management, cover crops, nutrient management, terracing, and stream fencing (for animal exclusion or bank restoration). While the implementation of these conservation practices is encouraging, the cumulative effects of these practices probably will not be detected in Conewago Creek water quality for several years. The magnitude of the effects of these conservation practices on water quality in Conewago Creek will depend largely on the extent to which nutrient loading (septic, manure, and commercial fertilizer) and sediment-producing activities are reduced over time. Difficult Run The Difficult Run watershed is a 57.82-mi 2 watershed that drains to the Potomac River. The long-term Difficult Run base-flow index (from 1936 to 2010) was 57.9, indicating that approximately 58 percent of streamflow exited the watershed as base flow and 42 percent as stormflow; however, with continued development and urbanization of the watershed, the base-flow index has decreased to 50 percent during the last 20 years. This base-flow index was less than those of the other watersheds evaluated in this study, likely because the Difficult Run watershed largely is underlain by crystalline piedmont metamorphic rocks and has a greater proportion of impervious urban land cover. A series of cluster and principal components analyses indicated that most of the variability in Difficult Run water quality could be attributed to hydrologic variability and seasonality. Statistically significant positive correlations with flow were observed for turbidity, dissolved oxygen, suspended sediments, ammonium, orthophosphate, iron, and total phosphorus. Statistically significant inverse correlations with flow were observed for water temperature, pH, specific conductance, bicarbonate, calcium, magnesium, nitrate, δ 15 N of nitrate, and silica. Statistically significant seasonal patterns were observed for numerous water-quality constituents: water temperature, ammonium, orthophosphate, and δ 15 N of nitrate were higher during the warm season, and dissolved oxygen, nitrate, and manganese were higher during the cool season. Surrogate regression models were developed to compute sediment and nutrient loading rates. The Difficult Run sediment load was approximately 8,000 tons per year, with greater than 95 percent of the sediment load in the 2013 water year contributed by the seven largest storm events. The total phosphorus load in Difficult Run was approximately 14,000 pounds of phosphorus per year, with the majority of the load contributed during stormflow periods. The total nitrogen load in Difficult Run is estimated to have been approximately 140,000 pounds per year, with total nitrogen accumulation less dominated by stormflow contributions than that of phosphorus and strongly affected by base-flow export of nitrogen from the basin. Extensive water-quality monitoring throughout the Difficult Run watershed revealed relatively uniform generation of flow per unit of watershed area, as well as spatial variation in water quality that is strongly related to land-use activities. Elevated nitrate concentrations were observed in a subset of monitoring sites that are inversely correlated with population density and positively correlated to the septic system density within each subwatershed. The majority of the elevated nitrate concentrations for these sites are hypothesized to be caused by nitrate leaching from septic systems, more so than homeowner fertilizer usage among these subwatersheds that have lower population densities than other parts of the watershed. Nitrate isotope data, temporal patterns in the water-quality data, mass-balance computations, and a separate land-use analysis all generally indicate that leachate from septic systems was the likely source of the elevated nitrate. Another group of water-quality sites have relatively low nitrogen concentrations, are located in areas that are served by city sewer lines, and have experienced stream restoration activities. A final group of sites drained the areas with the highest imperviousness and had strongly elevated specific conductance, chloride, and sodium, which were likely caused by a combination of road salting and other anthropogenic sources draining these urbanized areas in the watershed. A fourth group of sites represents a mixture of water sources and had water quality similar to that at the Difficult Run streamgage. Analysis of the nitrate isotope data generally indicates a broad range of composition indicative of mixed natural and anthropogenic nitrogen sources. Implementation of conservation practices increased in the Difficult Run watershed during the study period, and while a broad range of practice types was implemented, the most common practices included stream restoration. While the implementation of these conservation practices is encouraging, the cumulative effect of these practices probably will not be detected in Difficult Run water quality for several years.

Maryland, Pennsylvania, Virginia

Population and habitat viability assessments for Golden-cheeked Warblers and Black-capped Vireos: Usefulness to Partners in Flight Conservation Planning

Golden-cheeked Warblers and Black-capped Vireos are Neotropical migratory birds that are federally listed as endangered. Recovery plans for both species advise the use of viability modeling as a tool for setting specific recovery and management targets. Population and Habitat Viability Assessment workshops were conducted to develop population targets and conservation recommendations for these species. Results of the workshops were based on modeling demographic and environmental factors, as well as discussions of management issues, management options, and public outreach strategies. The approach is intended to be iterative, and to be tracked by research and monitoring efforts. This paper discusses the consensus-building workshop process and how the approach could be useful to Partners in Flight. Population and Habitat Viability Assessments (PHVA) were used to develop population targets and conservation recommendations for Golden-cheeked Warblers (Dendroica chrysoparia) and Black-capped Vireos (Vireo atricapillus). This paper explains what PHVAs are, discusses how they are conducted, describes the general results that are produced, and suggests how Partners in Flight (PIF) might use a similar process for bird conservation planning. Detailed results of the assessments are not discussed here; however they can be found elsewhere (U. S. Fish and Wildlife Service 1996a, U. S. Fish and Wildlife Service 1996b). PHVAs were considered for Golden-cheeked Warblers and Black-capped Vireos because they are controversial, endangered species, and the species? recovery plans list PHVAs as tools to develop recovery recommendations. The U. S. Fish and Wildlife Service (USFWS) realized that the data needed to perform PHVAs for these species is limited, but that various conservation efforts, such as the Balcones Canyonlands Conservation Plan and other endeavors, were proceeding without benefit of the biological summarization and guidance that a PHVA could provide.

Book chapter

Effects of selected low-impact-development (LID) techniques on water quality and quantity in the Ipswich River Basin, Massachusetts: Field and modeling studies

During the months of August and September, flows in the Ipswich River, Massachusetts, dramatically decrease largely due to groundwater withdrawals needed to meet increased residential and commercial water demands. In the summer, rates of groundwater recharge are lower than during the rest of the year, and water demands are higher. From 2005 to 2008, the U.S. Geological Survey, in a cooperative funding agreement with the Massachusetts Department of Conservation and Recreation, monitored small-scale installations of low-impact-development (LID) enhancements designed to diminish the effects of storm runoff on the quantity and quality of surface water and groundwater. Funding for the studies also was contributed by the U.S. Environmental Protection Agency’s Targeted Watersheds Grant Program through a financial assistance agreement with Massachusetts Department of Conservation and Recreation. The monitoring studies examined the effects of (1) replacing an impervious parking lot surface with a porous surface on groundwater quality, (2) installing rain gardens and porous pavement in a neighborhood of 3 acres on the quantity and quality of stormwater runoff, and (3) installing a 3,000-square foot (ft2) green roof on the quantity and quality of stormwater runoff. In addition, the effects of broad-scale implementation of LID techniques, reduced water withdrawals, and water-conservation measures on streamflow in large areas of the basin were simulated using the U.S. Geological Survey’s Ipswich River Basin model. From June 2005 to 2007, groundwater quality was monitored at the Silver Lake town beach parking lot in Wilmington, MA, prior to and following the replacement of the conventional, impervious-asphalt surface with a porous surface consisting primarily of porous asphalt and porous pavers. Changes in the concentrations of the water-quality constituents, phosphorus, nitrogen, cadmium, chromium, copper, lead, nickel, zinc, and total petroleum hydrocarbons, were monitored. Increased infiltration of precipitation did not result in discernible increases in concentrations of these potential groundwater contaminants. Concentrations of dissolved oxygen increased slightly in groundwater profiles following the removal of the impervious asphalt parking lot surface. In Wilmington, MA, in a 3-acre neighborhood, stormwater runoff volume and quality were monitored to determine the ability of selected LID enhancements (rain gardens and porous paving stones) to reduce flows and loads of the above constituents to Silver Lake. Flow-proportional water-quality samples were analyzed for nutrients, metals, total petroleum hydrocarbons, and total-coliform and Escherichia coli bacteria. In general, when all storms were considered, no substantial decreases were observed in runoff volume as a result of installing LID enhancements. However, the relation between rainfall and runoff did provide some insight into how the LID enhancements affected the effective impervious area for the neighborhood. A decrease in runoff was observed for storms of 0.2 inches (in.) or less of precipitation, which indicated a reduction in effective impervious area from approximately 10 percent to about 4.5 percent for the 3-acre area. Water-quality-monitoring results were inconclusive; there were no statistically significant differences in concentrations or loads when the pre- and post-installation-period samples were compared. Three factors were probably most important in minimizing differences: (1) the small decrease in effective impervious area, (2) the differences in the size of storms sampled for water-quality constituents before and after installation of the infiltration enhancing measures, and (3) small sample sizes. In a third field study, the characteristics of runoff from a vegetated “green” roof and a conventional, rubber-membrane roof were compared. The amount of precipitation and the length of the antecedent dry period were the two primary factors affecting the green roof’s water-storage capacity. The green roof retained more than 50 percent of the precipitation from storms with 0.04 to 1.0 in. of rain. Approximately 95 percent of the precipitation from one storm of nearly 2 in. was retained by the green roof. On the rubber-membrane roof, only a small, shallow puddle of insubstantial volume ever remained after a storm. Bulk precipitation from 10 storms was monitored for the same constituents (nutrients, metals, and total petroleum hydrocarbons) as the roof runoff, and the results were compared with those for roof-runoff samples. The use of fertilizers to help establish the vegetation during the study probably distorted any effect the plants and growing medium may have had on the retention of target analytes. As a result of the fertilizer and growing medium chemistry, median concentrations of total nitrogen, total phosphorus, cadmium, copper, and nickel in runoff from the green roof were greater than in the runoff from the conventional roof or in bulk precipitation. Concentrations of lead and zinc were greater in runoff from the conventional roof, probably a result of passage through the old, metal drainpipes. Simulations of the effects of LID on streamflow in the Ipswich River Basin were conducted with a previously calibrated Hydrological Simulation Program-FORTRAN (HSPF) precipitation-runoff model. Simulations were conducted at multiple spatial scales to evaluate the effects of (1) updated water withdrawals for the towns of Reading and Wilmington; (2) potential land-use changes at buildout (potential future development); (3) effective impervious area reductions upstream from the South Middleton streamgage to represent the effects of widespread implementation of LID retrofit techniques; (4) basin-scale water withdrawal reductions scaled up (expanded to the town level) from water-conservation pilot programs conducted by the Massachusetts Department of Conservation and Recreation; and (5) land-use change and LID techniques at a local scale, which is smaller than the HSPF subbasin. Effects on streamflow generally were evaluated by comparing results of two or more related simulations for selected reaches in the basin; thus, relative rather than absolute changes in simulated flow were the focus of the assessment. Simulations indicated that reduced withdrawals for the towns of Reading and Wilmington led to substantially higher medium and low flows in most of the reaches upstream from the South Middleton streamgage. Simulations of water-conservation measures resulted in negligible effects on streamflow. Overall, simulations indicated that spatial scale is an important factor in determining the effects of land-use change and LID practices on streamflow. Potential land-use changes at buildout had modest (percent differences of less than 20 percent) effects on streamflow in most subbasins because relatively little land in the basin was available for development (about 17 percent); moreover, most of the available open land is zoned for low-density residential development, and this land-use category was simulated to contain relatively little effective impervious area and to be similar hydrologically to the forested land in place prior to development. Results of the simulations conducted to evaluate widespread effective impervious area reductions upstream from the South Middleton streamgage indicated that the percentage of urban land use and associated effective impervious area was too small for a 50-percent reduction of effective impervious area to appreciably affect streamflow (percent differences of less than 20 percent) in most subbasins. In contrast, the results of the hypothetical local-scale simulations indicated that for smaller streams, where the percentage of urban land use and associated effective impervious area in the drainage area may be substantially higher, land-use change, development patterns, and LID practices potentially have much greater effects on streamflow. Modeling results also indicated that LID was potentially most beneficial for minimizing streamflow alteration when applied to dense urban development, largely because larger tracts of effective impervious area were available for reduction than were available for other land-use categories. For example, commercial-industrial-transportation land use is composed of 37 percent pervious area and 63 percent effective impervious area in the HSPF model, whereas low-density residential area is composed of 97.5 percent pervious area and only 2.5 percent effective impervious area. Field and modeling studies concurred in the assessment that LID enhancements would likely have the greatest effect on decreasing stormwater runoff when broadly applied to highly impervious urban areas. A measurable effect for small rainfall events (less than 0.25 inch) was determined in the small, highly pervious area that was monitored in this study, but the volume difference was not great.

Massachusetts

Landscape- and local-scale habitat influences on occupancy and detection probability of stream-dwelling crayfish: Implications for conservation

Crayfish are ecologically important in freshwater systems worldwide and are imperiled in North America and globally. We sought to examine landscape- to local-scale environmental variables related to occupancy and detection probability of a suite of stream-dwelling crayfish species. We used a quantitative kickseine method to sample crayfish presence at 102 perennial stream sites with eight surveys per site. We modeled occupancy (psi) and detection probability ( P ) and local- and landscape-scale environmental covariates. We developed a set of a priori candidate models for each species and ranked models using (Q)AICc. Detection probabilities and occupancy estimates differed among crayfish species with Orconectes eupunctus , O. marchandi , and Cambarus hubbsi being relatively rare (psi < 0.20) with moderate (0.46–0.60) to high (0.81) detection probability and O. punctimanus and O. ozarkae being relatively common (psi > 0.60) with high detection probability (0.81). Detection probability was often related to local habitat variables current velocity, depth, or substrate size. Important environmental variables for crayfish occupancy were species dependent but were mainly landscape variables such as stream order, geology, slope, topography, and land use. Landscape variables strongly influenced crayfish occupancy and should be considered in future studies and conservation plans.

Arkansas, Missouri

Bidirectional connectivity via fish ladders in a large Neotropical river

The conservation of potamodromous species worldwide has been threatened by the loss of longitudinal connectivity caused by dams intercepting large rivers. One environmental management strategy for reestablishing connectivity is providing passage through fish ladders. However, ladders in Neotropical rivers have been described as ascending one-way routes. We analyzed the movements of Prochilodus lineatus through a fish ladder at a large dam – Porto Primavera – in the heavily impounded Upper Paraná River, Brazil, to determine whether the ladder connected habitats downstream and upstream of the dam, in both directions. A total of 1,419 specimens of P. lineatus were PIT-tagged in areas downstream and upstream of the dam, and continuously monitored for 4 years. We documented bidirectional movements of P. lineatus through the fish ladder. Many individuals repeated these movements annually; one individual as many as six times. Thus, our study suggests the Porto Primavera fish ladder contributes to habitat connectivity, bidirectional passage, and conservation of P. lineatus. Our results deviate from the perception that fishways are ineffective in Neotropical rivers. Our data suggest that fishways can restore the bidirectional connectivity denied to some Neotropical species, and until the services of dams are no longer needed, environmental management through fish ladders may continue to be part of broader conservation strategy designed to preserve native fauna.

Paraná River Basin

Assessment of soil-gas and soil contamination at the South Prong Creek Disposal Area, Fort Gordon, Georgia, 2009-2010

Soil gas and soil were assessed for contaminants at the South Prong Creek Disposal Area at Fort Gordon, Georgia, from October 2009 to September 2010. The assessment included identifying and delineating organic contaminants present in soil-gas and inorganic contaminants present in soil samples collected from the area estimated to be the South Prong Creek Disposal Area, including two seeps and the hyporheic zone. This assessment was conducted to provide environmental contamination data to Fort Gordon personnel pursuant to requirements for the Resource Conservation and Recovery Act Part B Hazardous Waste Permit process. All soil-gas samplers in the two seeps and the hyporheic zone contained total petroleum hydrocarbons above the method detection level. The highest total petroleum hydrocarbon concentration detected from the two seeps was 54.23 micrograms per liter, and the highest concentration in the hyporheic zone was 344.41 micrograms per liter. The soil-gas samplers within the boundary of the South Prong Creek Disposal Area and along the unnamed road contained total petroleum hydrocarbon mass above the method detection level. The highest total petroleum hydrocarbon mass detected was 147.09 micrograms in a soil-gas sampler near the middle of the unnamed road that traverses the South Prong Creek Disposal Area. The highest undecane mass detected was 4.48 micrograms near the location of the highest total petroleum hydrocarbon mass. Some soil-gas samplers detected undecane mass greater than the method detection level of 0.04 micrograms, with the highest detection of toluene mass of 109.72 micrograms in the same location as the highest total petroleum hydrocarbon mass. Soil-gas samplers installed in areas of high contaminant mass had no detections of explosives and chemical agents above their respective method detection levels. Inorganic concentrations in five soil samples did not exceed regional screening levels established by the U.S. Environmental Protection Agency. Barium concentrations, however, were up to four times higher than the background concentrations reported in similar Coastal Plain sediments of South Carolina.

Open-File Report

Key seabird areas in southern New England identified using a community occupancy model

Seabirds are of conservation concern, and as new potential risks to seabirds are arising, the need to provide unbiased estimates of species&rsquo; distributions is growing. We applied community occupancy models to detection/non-detection data collected from repeated aerial strip-transect surveys conducted in 2 large study plots off southern New England, USA; one off the coast of Rhode Island and the other in Nantucket Sound. A total of 17 seabird species were observed at least once in each study plot. We found that detection varied by survey date and effort for most species and the average detection probability across species was less than 0.4. We estimated the influence of water depth, sea surface temperature, and sea surface chl a concentration on species-specific occupancy. Diving species showed large differences between the 2 study plots in their predicted winter distributions, which were largely explained by water depth acting as a stronger predictor of occupancy in Rhode Island than in Nantucket Sound. Conversely, similarities between the 2 study plots in predicted winter distributions of surface-feeding species were explained by sea surface temperature or chlorophyll a concentration acting as predictors of these species&rsquo; occupancy in both study plots. We predicted the number of species at each site using the observed data in order to detect &lsquo;hot-spots&rsquo; of seabird diversity and use in the 2 study plots. These results provide new information on detection of species, areas of use, and relationships with environmental variables that will be valuable for biologists and planners interested in seabird conservation in the region.

Massachusetts, Rhode Island

When portfolio theory can help environmental investment planning to reduce climate risk to future environmental outcomes - and when it cannot

Variability among climate change scenarios produces great uncertainty in what is the best allocation of resources among investments to protect environmental goods in the future. Previous research shows Modern Portfolio Theory (MPT) can help optimize environmental investment targeting to reduce outcome risk with minimal loss of expected level of environmental benefits, but no work has yet identified the types of cases for which MPT is most useful. This paper assembles data on 26 different conservation cases in three distinct ecological settings and develops new metrics to evaluate how well MPT can reduce uncertainty in future outcomes of a set of environmental investments. We find MPT is broadly but not universally useful and works best when multiple investments have negatively correlated outcomes across climate scenarios, a second-best investment has expected value almost as good as the value in the best investment; or multiple investments have little uncertainty in ecological outcomes.

Conservation Letters

The perpetual state of emergency that sacrifices protected areas in a changing climate

A modern challenge for conservation biology is to assess the consequences of policies that adhere to assumptions of stationarity (e.g. historic norms) in an era of global environmental change. Such policies may result in unexpected and surprising levels of mitigation given future climate change trajectories, especially as agriculture looks to protected areas to buffer against production losses during periods of environmental extremes. Here, we conduct a scenario impact assessment to determine the potential impact of climate change scenarios on the rates at which lands enrolled in the Conservation Reserve Program (CRP) lands are authorized for emergency biomass removal. Grassland biomass on CRP lands is authorized for ‘emergency’ harvesting for agricultural use when precipitation for the last four months falls below 40 percent of the normal, or ‘historical’ mean, precipitation for that four-month period. We develop and analyze scenarios under the condition that policy will continue to operate under assumptions of stationarity, thereby authorizing emergency biomass harvesting solely as a function of precipitation departure from historic norms. Model projections show the historical likelihood of authorizing emergency biomass harvesting in any given year in the northern Great Plains was 33.28 ± 0.96%, according to long-term weather records. Emergency biomass harvesting became the norm (>50% of years) in the scenario reflecting continued increases in emissions and a decrease in growing season precipitation, and areas in the Great Plains with higher historical mean annual rainfall were disproportionately affected and experienced a greater increase in emergency biomass removal. Emergency biomass harvesting decreased only in the scenario reflecting rapid reductions in emissions. Our scenario impact analysis indicates that biomass from lands enrolled in the CRP will be used primarily as a buffer for agriculture in an era of climatic change, unless policy guidelines are adapted or climate change projections significantly depart from the current consensus.

Montana, Nebraska, North Dakota, South Dakota, Wyo

Freshwater to seawater transitions in migratory fishes

The transition from freshwater to seawater is integral to the life history of many fishes. Diverse migratory fishes express anadromous, catadromous, and amphidromous life histories, while others make incomplete transits between freshwater and seawater. The physiological mechanisms of osmoregulation are widely conserved among phylogenetically diverse species. Diadromous fishes moving between freshwater and seawater develop osmoregulatory mechanisms for different environmental salinities. Freshwater to seawater transition involves hormonally mediated changes in gill ionocytes and the transport proteins associated with hypoosmoregulation, increased seawater ingestion and water absorption in the intestine, and reduced urinary water losses. Fishes attain salinity tolerance through early development, gradual acclimation, or environmentally or developmentally cued adaptations. This chapter describes adaptations in diverse taxa and the effects of salinity on growth. Identifying common strategies in diadromous fishes moving between freshwater and seawater will reveal the ecological and physiological basis for maintaining homeostasis in different salinities, and inform efforts to conserve and manage migratory euryhaline fishes.

Book chapter

Using environmental DNA (eDNA) to assess the presence of cavefish and cave crayfish populations in caves of the Ozark Highlands

Many cavefishes and cave crayfishes are considered of conservation concern; however, sampling these species is inherently difficult given their occupied environments. The goal of our project was to verify the presence of select karst organisms while developing the foundation for sampling approaches that might be useful to conservation and management agencies. Our project objectives were to develop assays to amplify deoxyribonucleic acid (DNA) from several species of Ozark cavefishes and cave crayfishes and complete an initial surveillance of locations across the Ozark Highlands using environmental DNA (eDNA). Using DNA either provided by agency cooperators or that we extracted from tissue samples, we PCR amplified and then sequenced the Cytochrome Oxidase 1 (CO1) gene for cave crayfishes and the NADH Dehydrogenase Subunit 2 (ND2) gene for cavefishes. We developed species-specific primers and probes for five cave crayfishes and two cavefishes. From February 2017 to May 2017, we sampled 1–5 sampling units from 42 caves, wells, and springs (i.e., sites) using eDNA and traditional visual surveys. We measured physicochemical parameters at each sampling unit to estimate detection probability associated with both techniques. We also calculated two occupancy covariates for each site using geospatial data. We successfully amplified Troglichthys rosae DNA from the environment and detected DNA representing this species at 24 of 40 sites. At 16 of the sites where we detected T. rosae DNA, we did not visually observe the species. Although our assay for Typlichthys eigenmanni successfully amplified the target DNA from the environment, it also resulted in false absences where the species was visually confirmed. Using eDNA to detect cave crayfishes was much more difficult. The assay for Cambarus subterraneus did not work for eDNA samples and we were unable to pick up DNA from the environment, even at locations where it was visually confirmed. Alternatively, the eDNA surveys worked well for C. tartarus and we were able to amplify DNA at every site where it was visually observed. Our assay for C. aculabrum was based on a single sample obtained from GenBank, and did not amplify eDNA from field samples. Lastly, our eDNA results from samples in the known range of Orconectes stygocaneyi suggested the species may be found at an additional cave. Detection using eDNA based on our O. stygocaneyi assay was likely low because it was designed from a pseudogene; however, positive eDNA samples were sequenced to confirm species-specific DNA. Detection probability of both cavefishes and cave crayfishes varied by survey technique and was influenced by water volume, water clarity, water velocity, and substrate. Detection of cavefishes and cave crayfishes via visual surveys decreased when water volume increased, whereas detection using eDNA increased with greater water volume. Detection between taxa using either sample method was highest in habitats classified by fine substrates, except for eDNA detection of crayfishes which was greatest in coarse substrates. Detection of cavefishes increased with water clarity, but detection of cave crayfishes increased with turbidity. Detection probability of both cavefishes and crayfishes using eDNA increased slightly with water velocity, but decreased with visual surveys as water velocity increased. Occupancy by both taxa was positively related to particular geologic series. Crayfish occupancy was negatively related to fine-scale anthropogenic disturbance (i.e., 500-m buffer around the site), whereas crayfish showed no relationship with disturbance. Our results suggest possible range extensions, provide insights to factors driving detection using both sample techniques, and suggest areas where recharge zones may be shared among caves. Future efforts focused on a comprehensive evaluation of genetic diversity among cave crayfishes to improve assay design could improve detection and the applicability of eDNA as a supplemental and non-invasive sampling approach.

Cooperator Science Series

Conservation genetics and wild trout: Evolving opportunities to support management

It is increasingly apparent that our planet is undergoing rapid, unprecedented environmental change. These changes are already impacting wild trout populations, leading to declines in occupancy and abundance across increasingly fragmented landscapes. Many changes are projected to intensify in the coming decades, which are likely to be crucial to the future of many wild populations. While there is some uncertainty in exactly how changes will manifest, we can be confident that many populations will need to rapidly adapt to change if they are to persist. The foundation of such rapid change is genetic diversity, and conservation strategies are most likely to be successful when they consider the role of genetics in the outlook for wild trout populations. While not a panacea, rapid advances in the field of conservation genetics allow longstanding questions to be addressed with greater rigor and present new opportunities to support management against a backdrop of accelerating change. Here, we review major advances in conservation genetics as they relate to wild trout and highlight potential opportunities to support conservation in the Anthropocene and key areas of continuing uncertainty.

Conference Paper

Targeting land-use change for nitratenitrogen load reductions in an agricultural watershed

The research was conducted as part of the USDA's Conservation Effects Assessment Project. The objective of the project was to evaluate the environmental effects of land-use changes, with a focus on understanding how the spatial distribution throughout a watershed influences their effectiveness.The Soil and Water AssessmentTool (SWAT) water quality model was applied to the Squaw Creek watershed, which covers 4,730 ha (11,683 ac) of prime agriculture land in southern Iowa. The model was calibrated (2000 to 2004) and validated (1996 to 1999) for overall watershed hydrology and for streamflow and nitrate loadings at the watershed outlet on an annual and monthly basis. Four scenarios for land-use change were evaluated including one scenario consistent with recent land-use changes and three scenarios focused on land-use change on highly erodible land areas, upper basin areas, and floodplain areas. Results for the Squaw Creek watershed suggested that nitrate losses were sensitive to land-use change. If land-use patterns were restored to 1990 conditions, nitrate loads may be reduced 7% to 47% in the watershed and subbasins, whereas converting row crops to grass in highly erodible land, upper basin, and floodplain areas would reduce nitrate loads by 47%, 16%, and 8%, respectively. These SWAT model simulations can provide guidance on how to begin targeting land-use change for nitrate load reductions in agricultural watersheds.

Journal of Soil and Water Conservation

Long-term monitoring data provide evidence of declining species richness in a river valued for biodiversity conservation

Free-flowing river segments provide refuges for many imperiled aquatic biota that have been extirpated elsewhere in their native ranges. These biodiversity refuges are also foci of conservation concerns because species persisting within isolated habitat fragments may be particularly vulnerable to local environmental change. We have analyzed long-term (14- and 20-y) survey data to assess evidence of fish species declines in two southeastern U.S. rivers where managers and stakeholders have identified potentially detrimental impacts of current and future land uses. The Conasauga River (Georgia and Tennessee) and the Etowah River (Georgia) form free-flowing headwaters of the extensively dammed Coosa River system. These rivers are valued in part because they harbor multiple species of conservation concern, including three federally endangered and two federally threatened fishes. We used data sets comprising annual surveys for fish species at multiple, fixed sites located at river shoals to analyze occupancy dynamics and temporal changes in species richness. Our analyses incorporated repeated site-specific surveys in some years to estimate and account for incomplete species detection, and test for species-specific (rarity, mainstem-restriction) and year-specific (elevated frequencies of low- or high-flow days) covariates on occupancy dynamics. In the Conasauga River, analysis of 26 species at 13 sites showed evidence of temporal declines in colonization rates for nearly all taxa, accompanied by declining species richness. Four taxa (including one federally endangered species) had reduced occupancy across the Conasauga study sites, with three of these taxa apparently absent for at least the last 5 y of the study. In contrast, a similar fauna of 28 taxa at 10 sites in the Etowah River showed no trends in species persistence, colonization, or occupancy. None of the tested covariates showed strong effects on persistence or colonization rates in either river. Previous studies and observations identified contaminants, nutrient loading, or changes in benthic habitat as possible causes for fish species declines in the Conasauga River. Our analysis provides baseline information that could be used to assess effectiveness of future management actions in the Conasauga or Etowah rivers, and illustrates the use of dynamic occupancy models to evaluate evidence of faunal decline from time-series data.

Georgia