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At least 559 records · Page 31Linked to original sources
USGS2010

Genetic consequences of trumpeter swan (Cygnus buccinator) reintroductions

Relocation programs are often initiated to restore threatened species to previously occupied portions of their range. A primary challenge of restoration efforts is to translocate individuals in a way that prevents loss of genetic diversity and decreases differentiation relative to source populations-a challenge that becomes increasingly difficult when remnant populations of the species are already genetically depauperate. Trumpeter swans were previously extirpated in the entire eastern half of their range. Physical translocations of birds over the last 70 years have restored the species to portions of its historical range. Despite the long history of management, there has been little monitoring of the genetic outcomes of these restoration attempts. We assessed the consequences of this reintroduction program by comparing patterns of genetic variation at 17 microsatellite loci across four restoration flocks (three wild-released, one captive) and their source populations. We found that a wild-released population established from a single source displayed a trend toward reduced genetic diversity relative to and significant genetic differentiation from its source population, though small founder population effects may also explain this pattern. Wild-released flocks restored from multiple populations maintained source levels of genetic variation and lacked significant differentiation from at least one of their sources. Further, the flock originating from a single source revealed significantly lower levels of genetic variation than those established from multiple sources. The distribution of genetic variation in the captive flock was similar to its source. While the case of trumpeter swans provides evidence that restorations from multiple versus single source populations may better preserve natural levels of genetic diversity, more studies are needed to understand the general applicability of this management strategy. ?? 2010 Springer Science+Business Media B.V. (outside the USA).

Conservation Genetics↗
USGS2016

Jaguar taxonomy and genetic diversity for southern Arizona, United States, and Sonora, Mexico

Executive Summary The jaguar is the largest Neotropical felid and the only extant representative of the genus Panthera in the Americas. In recorded history, the jaguars range has extended from the Southern United States, throughout Mexico, to Central and South America, and they occupy a wide variety of habitats. A previous jaguar genetic study found high historical levels of gene flow among jaguar populations over broad areas but did not include any samples of jaguar from the States of Arizona, United States, or Sonora, Mexico. Arizona and Sonora have been part of the historical distribution of jaguars; however, poaching and habitat fragmentation have limited their distribution until they were declared extinct in the United States and endangered in Sonora. Therefore, a need was apparent to have this northernmost (Arizona/Sonora) jaguar population included in an overall jaguar molecular taxonomy and genetic diversity analyses. In this study, we used molecular genetic markers to examine diversity and taxonomy for jaguars in the Northwestern Jaguar Recovery Unit (NJRU; Sonora, Sinaloa, and Jalisco, Mexico; and southern Arizona and New Mexico, United States) relative to jaguars in other parts of the jaguar range (Central and South America). The objectives of this study were to: Collect opportunistic jaguar samples (hide, blood, hair, saliva, and scat), from historical and current individuals, that originated in NJRU areas of Arizona, New Mexico, and Sonora; Use these samples to assess molecular taxonomy of NJRU jaguars compared to data from a previous study of jaguars rangewide; and Develop suggestions for conservation of NJRU jaguars based on the results.

Arizona, Jalisco, New Mexico, Sonora, Sinaloa↗
USGS2013

Factors controlling floc settling velocity along a longitudinal estuarine transect

A 147 km longitudinal transect of flocculated cohesive sediment properties in San Francisco Bay (SFB) was conducted on June 17th, 2008. Our aim was to determine the factors that control floc settling velocity along the longitudinal axis of the estuary. The INSSEV-LF video system was used to measure floc diameters and settling velocities at 30 stations at a distance of 0.7 m above the estuary bed. Floc sizes (D) ranged from 22 μm to 639 μm and settling velocities (Ws) ranged between 0.04 mm·s − 1 and 15.8 mm·s − 1 during the longitudinal transect. Nearbed turbulent shear stresses throughout the transect duration were within the 0.2–0.5 Pa range which typically stimulates flocculation growth. The individual D–Ws–floc density plots suggest the suspended sediments encountered throughout SFB were composed of both muddy cohesive sediment and mixed sediments flocs. Mass-weighted population mean settling velocity (Ws mass ) ranged from 0.5 mm·s − 1 to 10 mm·s − 1 . The macrofloc and microfloc (demarcation at 160 μm) sub-populations demonstrated parameterised settling velocities which spanned nearly double the range of the sample mean settling velocities (Ws mean ). The macroflocs tended to dominate the suspended mass (up to 77% of the ambient suspended solid concentration; SSC) from San Pablo Bay to Carquinez Strait (the vicinity of the turbidity maximum zone). Microfloc mass was particularly significant (typically 60–100% of the SSC) in the northern section of South Bay and most of Central Bay. The transect took eleven hours to complete and was not fully synoptic. During slack tide, larger and faster settling flocs deposited, accounting for most of the longitudinal variability. The best single predictor of settling velocity was water velocity 39 min prior to sampling, not suspended-sediment concentration or salinity. Resuspension and settling lags are likely responsible for the lagged response of settling velocity to water velocity. The distribution of individual floc diameters and settling velocities indicates that floc density for a given floc diameter varies greatly. A small portion (a few percent) of suspended sediment mass in SFB is sand-sized and inclusion of sand in flocs appears likely. Fractal theory for cohesive sediment assumes that there is a single primary particle size that flocculates, which is not the case for these types of mixed sediment flocs. The wide variability in the physical, biological and chemical processes which contribute to flocculation within SFB means that spatial floc data is required in order to accurately represent the diverse floc dynamics present in the Bay system. The importance in determining accurate estimates of floc density has been highlighted by the SFB data, as these provide the basis for realistic distributions of floc dry mass and the mass settling flux across a floc population. However, although video floc sampling devices can produce the various floc property trends observed in SFB, good survey practice is still paramount. One can see that if the sampling coverage (i.e. data collection frequency) is poor, this could lead to potential mis-interpretations of the data and only limited conclusions may be drawn from such a restricted survey. For example, a limited survey (i.e. only 3 stations, compared to the 10 stations in the full survey) in South Bay produces an under-estimate in both the macrofloc SSC macro distribution by a factor of four and the Ws macro by a factor of two. To develop sediment transport numerical models for SFB, high quality floc size and settling data are needed to understand and simulate the depositional qualities of both suspended cohesive sediment and mixed sediments in San Francisco Bay. This study has shown that the most pragmatic solution is a physically-based approach, whereby the detailed flocs D vs. Ws spectra are parameterised in terms of their macrofloc and microfloc properties. This aids in model calibration, whilst retaining more of the dynamical aspects of the floc populations. All forms of flocculation are dynamically active processes, therefore it is important to also include both SSC and turbulence functions together with the floc data.

California↗
USGS2013

A natural resource condition assessment for Sequoia and Kings Canyon National Parks: Appendix 14: plants of conservation concern

Sequoia and Kings Canyon National Parks are located in the California Floristic Province, which has been named one of world‘s hotspots of endemic biodiversity (Myers et al. 2000). The California Floristic Province is the largest and most important geographic floristic unit in California and extends from the Klamath Mountains of southwestern Oregon to the northwestern portion of Baja California (Hickman 1993). The Sierra Nevada, one of six regions that make up the California Floristic Province, covers nearly 20% of the land in California yet contains over 50% of its flora. Within the Sierra Nevada, the southern Sierra supports more Sierran endemic and rare plant taxa than the central and northern portions of the region (Shevock 1996). Sequoia and Kings Canyon National Parks (SEKI) encompass roughly 20% of the southern Sierra Nevada region. The parks overlap three floristic subregions (central Sierra Nevada High, southern Sierra Nevada High, and southern Sierra Nevada Foothills), and border the Great Basin Floristic Province. The parks support a rich and diverse vascular flora composed of over 1,560 taxa. Of these, 150 taxa are identified as having special status. The term special status is applied here to include taxa that are state or federally listed, rare in California, or at risk because they have a limited distribution. Only one species from these parks is listed under the state or federal Endangered Species Acts ( Carex tompkinsii , Tompkins‘ sedge, is listed as a rare species under the California Endangered Species Act), and one species is under review for federal endangered listing ( Pinus albicaulis , whitebark pine). However, an absence of threatened and endangered species recognized by Endangered Species Acts is not equivalent to an absence of species at risk. There are 83 plant taxa documented as occurring in SEKI that are considered imperiled or vulnerable in the state by the California Department of Fish and Game‘s California Natural Diversity Database (CNDDB 2010a). There are an additional 66 taxa not formally listed by CNDDB that are recognized as having special status because their distribution is restricted to the Sierra Nevada. Special status plants are distributed throughout the two parks and inhabit a wide range of environments along the length of the elevation gradient that characterizes these parks. Ideally, we would assess the condition (status and trends) of each of the taxa on the SEKI special status plant list, documenting current population sizes, demographic rates and demographic trends. We would also hope to quantify the effects of individual stressors on each species based on existing monitoring and research. However, no data are available for most of the species on the special status plant list. For those few species (12 herbaceous species and two tree species) for which we possess some change over time information, the data are not adequate to make a competent assessment. Note that we have not explored the tree demographic information in any detail, as is covered in the NRCA Intact Forest/Five Needle Pines and Sequoia chapters. In general, we are unable to present an ‗integrity‘ metric for special status species in the parks, since the data to quantify the condition of each species in such a manner is not available. In contrast, the park does possess substantial data describing biodiversity in the parks. Therefore, our analysis focuses on describing the distribution and rarity of special status plants within the parks, with a particular focus on assessing the spatial distribution of species richness. We hope that such information will prove useful to park managers in determining which areas in the parks merit the most attention (for example in developing monitoring protocols). We also assess potential vulnerability of special status species to the stressors chosen by the NRCA working group, using both park data and available literature. As a first step, we spent considerable effort updating and refining the criteria for the special status plant list, as this list defines which taxa are considered in our assessment. Observation data of these species was then compiled from all known sources in order to provide a comprehensive view of where special status plants have been documented and, ultimately, to enable the most informed determinations of areas in the parks that potentially support the highest number of rare and endemic taxa. These ‗hot spot‘ analyses are presented by geographic region, vegetation type and elevation. For these and other analyses presented in this report, we place more focus on summarizing findings for the herbaceous and shrub special status taxa than on special status trees. The trees which qualify as special status are the focus of other NRCA chapters, including Giant Sequoia and Intact Forests/Five-needle Pines. We do, however, present their mapped distributions and provide overviews of research related to the special status tree taxa in the Stressors section of this report.

California↗
USGS1994

Vertical distribution of a deep-water moss and associated epiphytes in Crater Lake, Oregon

A one-person submersible was used to examine the vertical distribution of the deep-water moss Drepanocladus aduncus (Hedw.) Warnst in Crater Lake (Oregon). Living specimens were found attached to sediment and rocks at depths between 25 m and 140 m. Dense beds of the moss were observed at depths between 30 m and 80 m, a region that corresponded roughly to the zone of maximum primary production by phytoplankton. The moss population supported a diverse assemblage of epiphytic algae, of which the most abundant genera included Cladophora,Oedogonium, Rhizoclonium, Tribonema, Vaucheria, and the diatoms Cocconeis, Cymbella, Epithemia, Fragilaria, Gomphonema, Melosira, Navicula, and Synedra. Chemical and physical data supported the hypothesis that the lower limit of distribution of the moss is determined by light limitation, whereas the upper limit is related to the availability of nutrients, particularly nitrate-nitrogen and trace elements. Deep-water videotapes of the moss population indicated that D. aduncus with its epiphytic algae was abundant enough in regions associated with the metalimnion and upper hypolimnion to have a potential influence on the nutrient dynamics of the Crater Lake ecosystem. Although the maximum depth at which living bryophytes occur in Crater Lake is similar to that found for Lake Tahoe, conditions in Lake Tahoe allow the growth and survival of a much more diverse assemblage of bryophytes and charophytes than is present in Crater Lake.

Northwest Science↗
USGS2019

Spatial and temporal distribution of bacterial indicators and microbial-source tracking within Tumacácori National Historical Park and the upper Santa Cruz River, southern Arizona and northern Mexico, 2015–2016

Tumacácori National Historical Park (TUMA) in southern Arizona protects the culturally important Mission San José de Tumacácori, while also managing a part of the ecologically diverse riparian corridor of the Santa Cruz River. The quality of the water flowing through depends solely on upstream watershed activities, and among the water-quality issues concerning TUMA is the microbiological pathogens in the river introduced by human and animal sources that pose a significant human health risk to employees and visitors. The U.S. Geological Survey (USGS) conducted a 3-year study to understand the sources, timing, and distribution of the fecal-indicator bacteria Escherichia coli ( E. coli ) within TUMA and the upstream watershed. The information provided in this investigation is a result of a comprehensive approach to quantify the spatial and temporal variability of E. coli and suspended sediment in the Upper Santa Cruz River Watershed. Several types of flow were sampled from base flow to flood flow and at high frequency intervals (rise, peak, and recession) to determine daily variability, as well as seasonal variability. Hydrologic data collection and estimation techniques were used to establish a hydrologic relation with E. coli and suspended sediment. Furthermore, source tracking was used to describe the potential sources of E. coli . Models were developed that are expected to be useful for predicting E. coli concentrations to help TUMA managers understand instantaneous conditions to keep the public and staff informed about potentially harmful water-quality conditions. In addition, the concentration, flux, and source information will provide more accurate data for other surface-water modeling and can be useful in the development of total maximum daily load standards. This will help TUMA describe the water-quality conditions at the park and waters flowing through the park, as well as prioritize and help carry out future best-management actions to address these issues.

Tumacácori National Historical Park, Upper Santa C↗
USGS2021

Coalescent methods reconstruct contributions of natural colonization and stocking to origins of Michigan inland Cisco (Coregonus artedi)

Fish population structure in previously glaciated regions is often influenced by natural colonization processes and human-mediated dispersal, including fish stocking. Endemic populations are of conservation interest because they may contain rare and unique genetic variation. While coregonines are native to certain Michigan inland lakes, some were stocked with fish from Great Lakes sources, calling into question the origin of extant populations. While most stocking targeted lake whitefish ( Coregonus clupeaformis ), cisco ( C. artedi ) were also stocked from the Great Lakes to inland waterbodies. We used population genetic data (microsatellite genotypes and mitochondrial (mt)DNA sequences), coalescent modeling, and approximate Bayesian computation to investigate the origins of 12 inland Michigan cisco populations. The spatial distribution of mtDNA haplotypes suggests Michigan is an introgression zone for two ancestral cisco lineages associated with separate glacial refugia. Low levels of genetic diversity and high levels of genetic divergence were observed for populations located well inland of the Great Lakes relative to populations occupying waterbodies near the Great Lakes. Estimates of recent Great Lakes gene flow ranged from 27 to 48% for populations near the Great Lakes shoreline but were substantially lower (under 8%) for populations further inland. Inland lakes with elevated recent gene flow estimates may have been recipients of stocked coregonine fry, including cisco. Low levels of genetic diversity paired with a high likelihood of endemism as indicated by strong genetic divergence and low Great Lakes population inputs suggest the analyzed cisco populations occupying southern Michigan kettle lakes are of elevated conservation interest.

Michigan↗
USGS2022

Lithology and disturbance drive cavefish and cave crayfish occurrence in the Ozark Highlands ecoregion

Diverse communities of groundwater-dwelling organisms (i.e., stygobionts) are important for human wellbeing; however, we lack an understanding of the factors driving their distributions, making it difficult to protect many at-risk species. Therefore, our study objective was to determine the landscape factors related to the occurrence of cavefishes and cave crayfishes in the Ozark Highlands ecoregion, USA. We sampled cavefishes and cave crayfishes at 61 sampling units using both visual and environmental DNA surveys. We then modeled occurrence probability in relation to lithology and human disturbance while accounting for imperfect detection. Our results indicated that occurrence probability of cave crayfishes was negatively associated with human disturbance, whereas there was a weak positive relationship between cavefish occurrence and disturbance. Both cavefishes and cave crayfishes were more likely to occur in limestone rather than dolostone lithology. Our results indicate structuring factors are related to the distribution of these taxa, but with human disturbance as a prevalent modifier of distributions for cave crayfishes. Limiting human alteration near karst features may be warranted to promote the persistence of some stygobionts. Moreover, our results indicate current sampling efforts are inadequate to detect cryptic species; therefore, expanding sampling may be needed to develop effective conservation actions.

Arkansas, Missouri, Oklahoma↗
USGS2021

Historical changes in plant water use and need in the continental United States

A robust method for characterizing the biophysical environment of terrestrial vegetation uses the relationship between Actual Evapotranspiration (AET) and Climatic Water Deficit (CWD). These variables are usually estimated from a water balance model rather than measured directly and are often more representative of ecologically-significant changes than temperature or precipitation. We evaluate trends and spatial patterns in AET and CWD in the Continental United States (CONUS) during 1980–2019 using a gridded water balance model. The western US had linear regression slopes indicating increasing CWD and decreasing AET (drying), while the eastern US had generally opposite trends. When limits to plant performance characterized by AET and CWD are exceeded, vegetation assemblages change. Widespread increases in aridity throughout the west portends shifts in the distribution of plants limited by available moisture. A detailed look at Sequoia National Park illustrates the high degree of fine-scale spatial variability that exists across elevation and topographical gradients. Where such topographical and climatic diversity exists, appropriate use of our gridded data will require sub-setting to an appropriate area and analyzing according to categories of interest such as vegetation communities or across obvious physical gradients. Recent studies have successfully applied similar water balance models to fire risk and forest structure in both western and eastern U.S. forests, arid-land spring discharge, amphibian colonization and persistence in wetlands, whitebark pine mortality and establishment, and the distribution of arid-land grass species and landscape scale vegetation condition. Our gridded dataset is available free for public use. Our findings illustrate how a simple water balance model can identify important trends and patterns at site to regional scales. However, at finer scales, environmental heterogeneity is driving a range of responses that may not be simply characterized by a single trend.

PLoS ONE↗
USGS2022

Multi-scale patterns in occurrence of an ephemeral pool-breeding amphibian

Species distributions are governed by processes occurring at multiple spatial scales. For species with complex life cycles, the needs of all life stages must be met within the dispersal limitations of the species. Multi-scale processes can be particularly important for these species, where small-scale patterns in specific habitat components can affect the distribution of one life stage, whereas large-scale patterns in land cover might better explain the distribution of other life stages. Using a conditional multi-scale model, we evaluated which aspects of the landscape and local environment are most strongly related to occupancy patterns of western spadefoots ( Spea hammondii ). In northern and central California, the proportion of grassland land cover within 2 km of a site was positively related to the occurrence of the northern clade of the western spadefoot. At the pond scale, we found that western spadefoots were more likely to breed in pools with lower pH. Our results indicate that protecting remaining grasslands for adult spadefoots and ensuring multiple pools with diverse characteristics and hydroperiods so at least some pools result in successful breeding will likely be necessary to conserve western spadefoots, especially with a changing climate. Considering the processes that affect species distributions at multiple life stages and spatial scales is an essential component of effective conservation.

California↗
USGS2011

Effects of grade control structures on fish passage, biological assemblages, and hydraulic environments in western Iowa streams: a multidisciplinary review

Land use changes and channelization of streams in the deep loess region of western Iowa have led to stream channel incision, altered flow regimes, increased sediment inputs, decreased habitat diversity and reduced lateral connectivity of streams and floodplains. Grade control structures (GCSs) are built in streams to prevent further erosion, protect infrastructure and reduce sediment loads. However, GCS can have a detrimental impact on fisheries and biological communities. We review three complementary biological and hydraulic studies on the effects of GCS in these streams. GCS with steep (≥1:4 rise : run) downstream slopes severely limited fish passage, but GCS with gentle slopes (≤1:15) allowed greater passage. Fish assemblages were dominated by species tolerant of degradation, and Index of Biotic Integrity (IBI) scores were indicative of fair or poor biotic integrity. More than 50% of fish species had truncated distributions. After modification of GCS to reduce slopes and permit increased passage, IBI scores increased and several species were detected further upstream than before modification. Total macroinvertebrate density, biomass and taxonomic diversity and abundance of ecologically sensitive taxa were greater at GCS than in reaches immediately upstream, downstream or ≥1 km from GCS. A hydraulic study confirmed results from fish passage studies; minimum depths and maximum current velocities at GCS with gentle slopes (≤1:15) were more likely to meet minimum criteria for catfish passage than GCS with steeper slopes. Multidisciplinary approaches such as ours will increase understanding of GCS-associated factors influencing fish passage, biological assemblage structure and other ecological relationships in streams.

Iowa↗
USGS2015

Soil ecology of a rock outcrop ecosystem: Abiotic stresses, soil respiration, and microbial community profiles in limestone cedar glades

Limestone cedar glades are a type of rock outcrop ecosystem characterized by shallow soil and extreme hydrologic conditions—seasonally ranging from xeric to saturated—that support a number of plant species of conservation concern. Although a rich botanical literature exists on cedar glades, soil biochemical processes and the ecology of soil microbial communities in limestone cedar glades have largely been ignored. This investigation documents the abiotic stress regime of this ecosystem (shallow soil, extreme hydrologic fluctuations and seasonally high soil surface temperatures) as well as soil physical and chemical characteristics, and relates both types of information to ecological structures and functions including vegetation, soil respiration, and soil microbial community metabolic profiles and diversity. Methods used in this investigation include field observations and measurements of soil physical and chemical properties and processes, laboratory analyses, and microbiological assays of soil samples. Stress factors quantified by this research include shallow soil (depth to bedrock ranging from 2.4 to 22.6 cm), volumetric soil water content levels seasonally ranging from xeric (below 5%) to saturated (above 50%), and seasonally extreme ground-surface temperatures (above 48°C). Findings from this research indicate that spatial and temporal heterogeneity exists in limestone cedar glades in terms of abiotic stress factors and soil physical and chemical properties. Several such soil properties (e.g. soil depth, organic matter levels, pH, and particle size distribution) are spatially correlated. These soil properties were statistically related to ecological structures and functions such as vegetation patterns, soil respiration, the density of culturable heterotrophic microbes in soil and metabolic diversity of soil microbial community profiles. In general, zones within limestone cedar glades that had relatively shallow soil, alkaline pH, low levels of organic matter and high levels of silt also tended to have depressed rates of soil respiration and reduced densities and metabolic diversity of culturable heterotrophic soil microbes. Additionally, seasonally-relevant stress factors including soil water content and temperatures at or near the soil surface were related to the same set of ecological structures and functions.

Tennessee↗
USGS2015

Richness, diversity, and similarity of arthropod prey consumed by a community of Hawaiian forest birds.

We evaluated the diet richness, diversity, and similarity of a community of seven endemic and two introduced passerine birds by analyzing the composition of arthropod prey in fecal samples collected during 1994–1998 at Hakalau Forest National Wildlife Refuge, Hawai‘i Island. Most prey fragments were identified to order, but we also distinguished among morpho-species of Lepidoptera based on the shape of larval (caterpillar) mandibles for higher resolution of this important prey type. Diets were compared among feeding specialists, generalists, and “intermediate” species and among introduced and three endangered Hawaiian honeycreeper (Fringillidae) species. Lepidoptera (moths), especially the larval (caterpillar) stage, comprised the greatest proportion of prey in samples of all bird species except for the introduced Japanese white-eye ( Zosterops japonicus ; JAWE). Araneae (spiders) was the most abundant order in JAWE samples and the second most abundant order for most other species. The two specialist honeycreepers ranked lowest in the richness and diversity of arthropod orders, but only the ‘akiapōlā‘au ( Hemignathus munroi , AKIP) was significantly lower than the three generalist or intermediate honeycreeper species. The diversity of arthropod orders was significantly lower for the three endangered honeycreeper species compared to the two introduced species. No significant differences were observed among the five honeycreepers with respect to the arthropod orders they consumed. The use of arthropod orders taken by endangered honeycreepers and introduced species was significantly different in all paired comparisons except for JAWE and ‘ākepa ( Loxops coccineus ; AKEP). In terms of richness and diversity of caterpillar morpho-species in the diet, only the specialist, AKEP, was significantly lower than all three generalist and intermediate species. Both AKEP and AKIP consumed a significantly different diet of caterpillar morpho-species compared to at least one honeycreeper generalist or intermediate species. Among the endangered honeycreepers and introduced species, the richness and diversity of caterpillar morpho-species was significantly lower only for AKEP compared to both introduced species. Significant differences were not observed between endangered and introduced species in the distribution of caterpillar morpho-species in the diet. Only three morpho-species were heavily exploited, with one being consumed by all bird species. The heavy exploitation of very few morpho-species by specialists underscored their greater vulnerability to changes in forest food webs and threats to key arthropod prey. When evaluated together with data on overlap in foraging behavior, our results could be useful in evaluating competition between bird species at Hakalau. Nevertheless, invasive parasitoid wasps may impact key caterpillar prey more substantially than do introduced birds, highlighting the need for additional research to understand the ecology of caterpillar species and their interactions with both invertebrate and vertebrate consumers. The severe decline of specialist bird species historically and recently is a reminder of the importance of maintaining food web resilience, potentially through vigorous habitat restoration, to withstand the continuing and perhaps increasing threats from a diverse array of invasive species and climate change.

Hawaii↗
USGS2016

Genetic diversity of Wolbachia endosymbionts in Culex quinquefasciatus from Hawai`i, Midway Atoll, and Samoa

Incompatible insect techniques are potential methods for controlling Culex quinquefasciatus and avian disease transmission in Hawai‘i without the use of pesticides or genetically modified organisms. The approach is based on naturally occurring sperm-egg incompatibilities within the Culex pipiens complex that are controlled by different strains of the bacterial endosymbiont Wolbachia pipientis (wPip). Incompatibilities can be unidirectional (crosses between males infected with strain A and females infected with strain B are fertile, while reciprocal crosses are not) or bidirectional (reciprocal crosses between sexes with different wPip strains are infertile). The technique depends on release of sufficient numbers of male mosquitoes infected with an incompatible wPip strain to suppress mosquito populations and reduce transmission of introduced avian malaria ( Plasmodium relictum ) and Avipoxvirus in native forest bird habitats. Both diseases are difficult to manage using more traditional methods based on removal and treatment of larval habitats and coordination of multiple approaches may be needed to control this vector. We characterized the diversity of Wolbachia strains in C. quinquefasciatus from Hawai‘i, Kaua‘i, Midway Atoll, and American Samoa with a variety of genetic markers to identify compatibility groups and their distribution within and between islands. We confirmed the presence of wPip with multilocus sequence typing, tested for local genetic variability using 16 WO prophage genes, and identified similarities to strains from other parts of the world with a transposable element (tr1). We also tested for genetic differences in ankyrin motifs (ank2 and pk1) which have been used to classify wPip strains into five worldwide groups (wPip1–wPip5) that vary in compatibility with each other based on experimental crosses. We found a mixture of both widely distributed and site specific genotypes based on presence or absence of WO prophage and transposable element markers on Hawai‘i Island (Volcano, Pu‘u Wa‘awa‘a, Laupāhoehoe, Kaumana, Kahuku, Nīnole, and Maulua Gulch), Kaua‘i Island (Kawaikōī, Mōhihi, Kalāheo, Lāwa‘i and Hanapepe) and Midway Atoll. Genotypes from American Samoa were unique and formed their own clade. Based on analysis of ankyrin motifs, wPip strains from Hawai‘i, Kaua‘i, and Midway Atoll were most similar to wPip5 strains of Australasian origin. By contrast, Wolbachia strains from Culex quinquefasciatus collected in American Samoa were most similar to wPip3 strains of American origin. We detected a single Culex mosquito from Pu‘u Wa‘awa‘a on Hawai‘i Island that was infected with a unique wPip3 genotype. This discovery, plus a rarefaction analysis of genotypes from Kaua‘i and Hawai‘i Islands suggests that limited sampling may have underestimated diversity of wPip in our study. Mosquitoes infected with wPip5 and wPip3 are bidirectionally compatible with each other based on prior studies, which would support their ability to coexist within the same population on Hawai‘i Island. Available evidence from prior studies suggests that genotype wPip4 from Africa, the Middle East, Europe, and Asia is bidirectionally incompatible with genotype wPip5 and varies in compatibility with genotype wPip3 depending on geographic origin. Since wPip5 appears to be the most common compatibility group in Hawai‘i based on limited sampling, logical next steps are to 1) expand the current survey to include additional islands and localities, 2) infect a laboratory colony of Hawaiian Culex with wPip4 through tetracycline treatment of Hawaiian mosquitoes and backcross with Culex from Europe, North Africa, and the Middle East that are naturally infected with wPip4, 3) conduct cage trials to confirm bidirectional incompatibilities between Hawaiian Culex infected with wPip4 and wPip5, and 4) conduct field trials to evaluate whether release of incompatible males can be applied at small scales to suppress local populations.

American Samoa, Hawaii↗
USGS2019

Sequence analysis and acoustic tracking individual lake sturgeon identifies multiple patterns of river-lake habitat use

Understanding the spatial ecology of sturgeon (Acipenseridae) has proven to be a challenge due to the life history characteristics of these fish, especially their long life span, intermittent spawning, and long‐distance migrations. Within the Huron‐Erie Corridor (HEC) of the Laurentian Great Lakes, habitat use of 247 lake sturgeon ( Acipenser fulvescens ) was monitored over a three‐year period (2015–2017) with acoustic transmitters. Extensive spatial coverage of receivers throughout the St. Clair River, Lake St. Clair, and Detroit River between Lake Huron and Lake Erie (~150 km) allowed for continuous monitoring of the movements of acoustic‐tagged individuals. Sequence analysis of individual detection histories was used to describe lake sturgeon habitat use and to determine (1) whether distinct habitat‐use patterns occurred within the HEC; (2) whether the range of habitats occupied varied across seasons among sturgeon grouped by common patterns; and (3) whether variation identified was related to tagging sites in the two rivers or sex. Lake sturgeon were active throughout the HEC, but five distinct habitat‐use patterns were identified. River residents were not broadly distributed across entire rivers, but rather associated with particular segments (middle Detroit River, St. Clair River delta). Variations in habitat‐use sequences were in part related to three river tagging sites, but not sex, and did not produce groups with sequences that reflected all five habitat‐use patterns derived from cluster analysis. Lake sturgeon distribution was reduced to fewer habitat segments during winter and expanded to the maximum extent during the spring and summer. Conservation planning that incorporates behavioral diversity of habitat use is relatively rare due to a lack of observations on movements of individuals at biologically relevant spatial and temporal scales, but using telemetry and sequence analysis methods may promote the success of conservation and restoration efforts.

St. Clair River, Lake St. Clair, Detroit River↗
USGS2022

Density, harvest rates, and growth of a reintroduced American black bear population

Less than 30% of all species reintroductions have been successful and it is important that factors associated with success or failure be identified. Officials experimentally translocated 14 adult female American black bears ( Ursus americanus ) from Great Smoky Mountains National Park, North Carolina and Tennessee, USA, to Big South Fork National River and Recreation Area in the Cumberland Plateau of Kentucky and Tennessee, USA, in 1996–1997. Since that time, the reintroduced bear population has continued to expand in size and range so our study objective was to use spatially explicit capture-recapture methods across a wide spatial extent to estimate bear population abundance and growth. We constructed 440 (223 in KY, 217 in TN) hair traps in our primary sampling area in 2019 arranged in clusters of 4–9 traps/cluster, which we augmented with data from 138 hair traps in a secondary sampling area in Tennessee collected in 2018. We extracted and genotyped DNA from hair samples to construct spatially explicit capture histories, using spatial covariates to model inhomogeneous densities. Population abundance estimates across our 36,035-km 2 study area were 411 males and 406 females excluding cubs. Based on an initial standing population of 18 adult and subadult bears, the mean annual growth rate ( λ ) from 1998 to 2019 was 1.199. The mean annual harvest rate in Kentucky from 2013 to 2019 was 5.1% and in Tennessee from 2014 to 2019 was 13.2%. Based on simulations, the hunting seasons reduced mean λ from 1.217 to 1.199, but growth was rapid despite harvest. Genetic diversity was retained, with similar expected heterozygosity as in the source population. The lack of conspecifics, highly productive habitat, and an initial age and sex distribution that was skewed toward the most fecund members of the population likely contributed to the rapid growth and high levels of gene retention in this bear population.

Kentucky, Tennessee↗
USGS2022

Genetic population structure of cisco, Coregonus artedi, in the Laurentian Great Lakes

Management of a widely distributed species can be a challenge when management priorities, resource status, and assessment methods vary across jurisdictions. For example, restoration and preservation of coregonine species diversity is a goal of management agencies across the Laurentian Great Lakes. However, management goals and the amount of information available varies across management units, making the focus for management efforts challenging to determine. Genetic data provide a spatially consistent means to assess diversity. Therefore, we examined the genetic stock structure of cisco ( Coregonus artedi ) in the Great Lakes where the species is still extant. Using genotype data from 17 microsatellite DNA loci, we observed low levels of population structure among collections with most contributions to overall diversity occurring among lakes. Cisco from lakes Superior, Michigan, Ontario, and the St. Marys River could be considered single genetic populations while distinct genetic populations were observed among samples from northern Lake Huron. Significant within-lake diversity in Lake Huron is supported by populations found in embayments in northern Lake Huron. The Grand Traverse Bay population in Lake Michigan represents a distinct population with reduced levels of genetic variation when compared to other lakes. The different levels of within lake population structure we observed will be important to consider as future lake-specific management plans are developed.

Great Lakes↗
USGS2015

Taxonomic revision of Phascogale tapoatafa (Meyer, 1793) (Dasyuridae; Marsupialia), including descriptions of two new subspecies and confirmation of P. pirata Thomas, 1904 as a ‘Top End’ endemic

The Australian Brush-tailed Phascogale ( Phascogale tapoatafa sensu lato ) has a broad but highly fragmented distribution around the periphery of the Australian continent and all populations are under significant ongoing threat to survival. A new appraisal of morphological and molecular diversity within the group reveals that the population in the ‘Top End’ of the Northern Territory is specifically distinct from all others, including those in the Kimberley region of Western Australia to the west and on Cape York of Queensland to the east. The name P. pirata Thomas, 1904 is available for the ‘Top End’ taxon. Three geographically disjunct populations are distinguished at subspecies level within P. tapoatafa on a suite of external and cranio-dental features; these are found in southeast Australia from South Australia to mid-coastal Queensland (nominotypical tapoatafa ), southwest Western Australia ( wambenger subsp. nov.), and the Kimberley region of Western Australia ( kimberleyensis subsp. nov.). A potential fourth subspecies occurs on Cape York but remains too poorly represented in collections for adequate characterization. Molecular divergence estimates based on partial sequences of the mitochondrial cytochrome b gene indicate that the range disjunction across southern Australia probably dates from the Late Pliocene, with the multiple disjunctions across northern Australia being more recent though almost certainly exceeding 400,000 years. An argument is made for the continued use of the subspecies rank in Australian mammalogy, despite a general lack of consistency in its current application.

Zootaxa↗