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EAARL coastal topography-Cape Hatteras National Seashore, North Carolina, post-Nor'Ida, 2009: first surface

These remotely sensed, geographically referenced elevation measurements of lidar-derived first-surface (FS) topography datasets were produced collaboratively by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, FL, and the National Park Service (NPS), Northeast Coastal and Barrier Network, Kingston, RI. This project provides highly detailed and accurate datasets of a portion of the National Park Service Southeast Coast Network's Cape Hatteras National Seashore in North Carolina, acquired post-Nor'Ida (November 2009 nor'easter) on November 27 and 29 and December 1, 2009. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color-infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine aircraft, but the instrument was deployed on a Pilatus PC-6. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation from a point cloud of last return elevations. For more information about similar projects, please visit the Decision Support for Coastal Science and Management website.

Data Series

Influence of sediment presence on freshwater mussel thermal tolerance

Median lethal temperature (LT50) data from water-only exposures with the early life stages of freshwater mussels suggest that some species may be living near their upper thermal tolerances. However, evaluation of thermal sensitivity has never been conducted in sediment. Mussels live most of their lives burrowed in sediment, so understanding the effect of sediment on thermal sensitivity is a necessary step in evaluating the effectiveness of the water-only standard method, on which the regulatory framework for potential thermal criteria currently is based, as a test of thermal sensitivity. We developed a method for testing thermal sensitivity of juvenile mussels in sediment and used the method to assess thermal tolerance of 4 species across a range of temperatures common during summer. Stream beds may provide a thermal refuge in the wild, but we hypothesized that the presence of sediment alone does not alter thermal sensitivity. We also evaluated the effects of 2 temperature acclimation levels (22 and 27°C) and 2 water levels (watered and dewatered treatments). We then compared results from the sediment tests to those conducted using the water-only standard methods. We also conducted water-only LT tests with mussel larvae (glochidia) for comparison with the juvenile life stage. We found few consistent differences in thermal tolerance between sediment and water-only treatments, between acclimation temperatures, between waterlevel treatments, among species, or between juvenile and glochidial life stages (LT50 range = 33.3-37.2°C; mean = 35.6°C), supporting our hypothesis that the presence of sediment alone does not alter thermal sensitivity. The method we developed has potential for evaluating the role of other stressors (e.g., contaminants) in a more natural and complex environment.

Freshwater Science

Areal extent, hydrogeologic characteristics, and possible origins of the carbonate rock Newburg Zone (Middle-Upper Silurian) in Ohio

The zone occurs in carbonate rocks of Middle to Late Silurian age across much of Ohio. Known also to well drillers as the "Second Water' in the "Big Lime' carbonate sequence, the Newburg zone is a source of hydrocarbons in northeast Ohio, brines in southeast Ohio, and a widespread source of water over much of west-central Ohio. Close to recharge areas, the quality of the water is comparable to that of the overlying carbonate rocks; thus, the Newburg zone warrants further investigation as a source of water for domestic use. Theories for the porosity and permeabilty of the Newburg zone include: 1) deposition of carbonate or quartz sand along an erosional surface and later lithified to porous and permeable sandstone; 2) dissolution of fossils within Silurian reef complexes; 3) fracture-induced porosity along thrust faults developed during the Alleghenian orogeny; and 4) a combination of these processes. -from Authors

Ohio Journal of Science

Comparing catchment hydrologic response to a regional storm using specific conductivity sensors

A better understanding of stormwater generation and solute sources is needed to improve the protection of aquatic ecosystems, infrastructure, and human health from large runoff events. Much of our understanding of water and solutes produced during stormflow comes from studies of individual, small headwater catchments. This study compared many different types of catchments during a single large event to help isolate landscape controls on streamwater and solute generation, including human-impacted land cover. We used a distributed network of specific electrical conductivity sensors to trace storm response during the post-tropical cyclone Sandy event of October 2012 at 29 catchments across the state of New Hampshire. A citizen science sensor network, Lotic Volunteer for Temperature, Electrical Conductivity, and Stage, provided a unique opportunity to investigate high-temporal resolution stream behavior at a broad spatial scale. Three storm response metrics were analyzed in this study: (a) fraction of new water contributing to the hydrograph; (b) presence of first flush (mobilization of solutes during the beginning of the rain event); and (c) magnitude of first flush. We compared new water and first flush to 64 predictor attributes related to land cover, soil, topography, and precipitation. The new water fraction was positively correlated with low and medium intensity development in the catchment and riparian buffers and with the precipitation from a rain event 9 days prior to Sandy. The presence of first flush was most closely related (positively) to soil organic matter. Magnitude of first flush was not strongly related to any of the catchment variables. Our results highlight the potentially important role of human landscape modification in runoff generation at multiple spatial scales and the lack of a clear role in solute flushing. Further development of regional-scale in situ sensor networks will provide better understanding of stormflow and solute generation across a wide range of landscape conditions.

New Hampshire

NASA's surface biology and geology designated observable: A perspective on surface imaging algorithms

The 2017–2027 National Academies' Decadal Survey, Thriving on Our Changing Planet , recommended Surface Biology and Geology (SBG) as a “Designated Targeted Observable” (DO). The SBG DO is based on the need for capabilities to acquire global, high spatial resolution, visible to shortwave infrared (VSWIR; 380–2500 nm; ~30 m pixel resolution) hyperspectral (imaging spectroscopy) and multispectral midwave and thermal infrared (MWIR: 3–5 μm; TIR: 8–12 μm; ~60 m pixel resolution) measurements with sub-monthly temporal revisits over terrestrial, freshwater, and coastal marine habitats. To address the various mission design needs, an SBG Algorithms Working Group of multidisciplinary researchers has been formed to review and evaluate the algorithms applicable to the SBG DO across a wide range of Earth science disciplines, including terrestrial and aquatic ecology, atmospheric science, geology, and hydrology. Here, we summarize current state-of-the-practice VSWIR and TIR algorithms that use airborne or orbital spectral imaging observations to address the SBG DO priorities identified by the Decadal Survey: (i) terrestrial vegetation physiology, functional traits, and health; (ii) inland and coastal aquatic ecosystems physiology, functional traits, and health; (iii) snow and ice accumulation, melting, and albedo; (iv) active surface composition (eruptions, landslides, evolving landscapes, hazard risks); (v) effects of changing land use on surface energy, water, momentum, and carbon fluxes; and (vi) managing agriculture, natural habitats, water use/quality, and urban development. We review existing algorithms in the following categories: snow/ice, aquatic environments, geology, and terrestrial vegetation, and summarize the community-state-of-practice in each category. This effort synthesizes the findings of more than 130 scientists.

Remote Sensing of Environment

Technology transfer opportunities: partnership opportunities for states: U.S. Geological Survey assistance to state business economy

As a research and information laboratory of the Federal government, the U.S. Geological Survey (USGS) is committed to making its developments readily available to customers within the private sector. The USGS is the Nation's premier earth science agency, providing unique scientific data and technology in the areas of natural hazards, environment, resources, and information. Often USGS research and information activities lead to developments that have significant commercial applications and that can help increase the global competitiveness of our domestic economy. The agency uses a proactive technology transfer program to encourage the adoption and use of these developments. In addition, the agency welcomes collaborative opportunities with private industry.

Fact Sheet

Flood-inundation maps for the White River near Edwardsport, Indiana

Digital flood-inundation maps for a 3.3-mile reach of the White River near Edwardsport, (Ind.), were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Department of Transportation. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/, depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at USGS streamgage 03360730, White River near Edwardsport, Ind. Near-real-time stages at this streamgage may be obtained from the USGS National Water Information System at http://waterdata.usgs.gov/ or the National Weather Service Advanced Hydrologic Prediction Service at http://water.weather.gov/ahps/, which also forecasts flood hydrographs at this site (site EDWI3.) Flood profiles were computed for the White River near Edwardsport reach by means of a one-dimensional step-back-water model developed by the U.S. Army Corps of Engineers. The hydraulic model was calibrated by using the most current stage-discharge relations at USGS streamgage 03360730, White River near Edwardsport, Ind., and high-water marks from the flood of April 2013. The calibrated hydraulic model was then used to determine 19 water-surface profiles for flood stages at approximately 1-foot intervals referenced to the streamgage datum and ranging from bankfull to the highest stage of the current stage-discharge rating curve. The simulated water-surface profiles were then combined with a geographic information system digital elevation model to delineate the area flooded at each water level. The availability of these maps, along with Internet information regarding current stage from the USGS streamgage 03360730 White River near Edwardsport, Ind., and forecasted stream stages from the National Weather Service, provides emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for post-flood recovery efforts.

Indiana

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River—A synthesis of science, 2005 to 2012

This report is intended to synthesize the state of the scientific understanding of pallid sturgeon ecological requirements to provide recommendations for future science directions and context for Missouri River restoration and management decisions. Recruitment of pallid sturgeon has been low to non-existent throughout its range. Emerging understanding of the genetic structure of pallid sturgeon populations sets a broad framework for species and river management decisions, including decisions about managing the future genetic diversity of the species, but also decisions about where and what type of river restoration actions will be effective for subpopulations of this highly migratory species. Adult pallid sturgeon may migrate hundreds of kilometers (km) to spawn and their progeny may disperse even greater distances downstream as drifting free embryos. As a result of their complex life history pallid sturgeon naturally exploit a wide range of habitats during their life cycles. The construction of dams and reservoirs has fragmented habitats and may have shifted Missouri River subpopulations downstream. Research has not identified one primary biological or ecological constraint that appears to limit populations of the pallid sturgeon. With the present (2013) state of knowledge many life stages and life-stage transitions cannot be ruled out as contributing to recruitment failure. Biological opinions in 2000 (and amended in 2003) presented the dominant hypotheses for recruitment failure that existed at that time. Emphasis was on the role of the flow regime, specifically spring flow pulses (“spring rises”), to condition spawning substrate and cue reproductive aggregations and migrations, and on low flows and additional slow, shallow-water area to serve as rearing habitat for age-0 to juvenile pallid sturgeon. Studies on spawning habitat dynamics have documented that habitat patches selected for spawning by fish in the Lower Missouri River (Missouri River downstream from Gavins Point Dam to the confluence with the Mississippi River) are dominantly on outside, revetted bends in the deepest, fastest, and most turbulent water. Studies in more natural habitat on the Yellowstone River have documented spawning in convergent flow in the middle of the channel on discrete patches of gravel within a sand-dominated channel, an arrangement that may be more effective in attracting aggregations of reproductive fish compared to the nearly continuous revetment on the Lower Missouri River. Pallid sturgeon spawn in the spring and early summer during periods of increasing day length. Water temperature consistently exerts a threshold effect for spawning at 16–18 °C. In addition, the role of water temperature is indicated by pauses and reversals in upstream migrations that have been associated with cold weather fronts that create a transient decrease in water temperature. From 2005 to 2012 on the Lower Missouri River, no obvious relations between flow pulses and fish movements and spawning behaviors have been apparent. However, pallid sturgeon tracking at the Upper Missouri–Yellowstone confluence indicates that in most years, most telemetered pallid sturgeon migrate out of the Missouri River and into the Yellowstone River in the June–July timeframe in association with the spring pulse. This pattern was disrupted in 2011 when a high flow pulse with warm temperatures and high turbidity emanated from the Milk River, followed by record releases from Fort Peck Dam, and 36–39 percent of the telemetered population migrated up the Upper Missouri. This result supports the hypothesis that sufficiently large flow pulses may trigger migration and aggregation but it is not clear that functional pulses are within reservoir management authorities. Notably, a pallid sturgeon free embryo was captured on the Upper Missouri River in 2011 and another single, genetically confirmed embryo was captured on the Yellowstone River in 2012. Research on free-embryo drift has indicated the potential for hundreds of miles of downstream dispersal. Lack of distance to accommodate the extended downstream dispersal period of free embryos on the Upper Missouri and Yellowstone Rivers is the predominant hypothesis for recruitment failure in the upper basin. Long drift distances in the Lower Missouri River may be responsible for shifting Lower Missouri River sub-populations further into the Middle Mississippi River. Physical understanding of drift processes indicates that mean velocities could be slowed through decreased discharges or increased channel hydraulic radius (width and topographic diversity) to reduce free-embryo dispersal distances. In addition, the probability that free embryos are transported into and retained in channel-margin habitats is theoretically amenable to channel re-engineering that would increase cross-channel secondary currents in bends or channel expansions. Considerable uncertainty persists, however, about whether extended drift of Lower Missouri River larvae is responsible for recruitment failure. If drift distance is limiting, it is important to discern whether it would be advisable to retain larvae within the Missouri River, and where along the river restoration projects should be placed to optimize survival and growth of age-0 and juvenile sturgeon. Longitudinal differences in female pallid sturgeon fecundity lend support to the hypothesis that recruitment failure may be due, in part, to fish having insufficient nutrition to produce the numbers of gametes needed for the population to grow, perhaps because of simultaneous declines in prey-fish populations and their habitats. Establishing a chain of causality from habitat decline, to prey-fish populations, to sturgeon diets, to sturgeon fecundity, and to pallid sturgeon population growth presents a considerable scientific challenge. In addition to the dominant hypotheses relating pallid sturgeon populations to changes in flow regime and channel morphology, other factors have been identified that might be sources of stress and contribute to recruitment failure. Among these are water quality and contaminants. Ambient water-quality monitoring on the Missouri River has demonstrated summer episodes when dissolved oxygen dips below 5 milligrams per liter, a threshold that may be stressful especially to age-0 and juvenile sturgeon. Documented cases of intersex in shovelnose and pallid sturgeon indicate that agricultural and municipal sources of endocrine disrupting chemicals also may have a role in pallid sturgeon recruitment failure. Scientific understanding of the ecological requirements of pallid sturgeon has increased almost exponentially in the last two decades, and efforts are now turning from understanding fundamental biology of the species to quantifying how population dynamics relate to potential management actions. Progress in developing the science needed to inform management actions on the Missouri River may benefit from continuation of monitoring of reproductive cycles, reproductive movements, growth, and survival of telemetry tagged adults, increased emphasis on focused, complementary field and laboratory studies of factors influencing early life history, implementation of studies to resolve the role of food limitations in growth, survival, and reproductive condition, and implementation of studies designed specifically to parameterize models linking management to populations.

Missouri River

Conceptual model of sedimentation in the Sacramento-San Joaquin River Delta

Sedimentation in the Sacramento–San Joaquin River Delta builds the Delta landscape, creates benthic and pelagic habitat, and transports sediment-associated contaminants. Here we present a conceptual model of sedimentation that includes submodels for river supply from the watershed to the Delta, regional transport within the Delta and seaward exchange, and local sedimentation in open water and marsh habitats. The model demonstrates feedback loops that affect the Delta ecosystem. Submerged and emergent marsh vegetation act as ecosystem engineers that can create a positive feedback loop by decreasing suspended sediment, increasing water column light, which in turn enables more vegetation. Sea-level rise in open water is partially countered by a negative feedback loop that increases deposition if there is a net decrease in hydrodynamic energy. Manipulation of regional sediment transport is probably the most feasible method to control suspended sediment and thus turbidity. The conceptual model is used to identify information gaps that need to be filled to develop an accurate sediment transport model.

Sacramento-San Joaquin Delta

Flood-inundation maps for White River at Petersburg, Indiana

Digital flood-inundation maps for a 7.7-mile reach of the White River at Petersburg, Indiana, were created by the U.S. Geological Survey (USGS), in cooperation with the Indiana Office of Community and Rural Affairs. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage at White River at Petersburg, Ind. (03374000). Near-real-time stages at this streamgage may be obtained from the USGS National Water Information System at http://waterdata.usgs.gov/ or the National Weather Service (NWS) Advanced Hydrologic Prediction Service at http:/water.weather.gov/ahps/ , which also forecasts flood hydrographs at this site (PTRI3). Flood profiles were computed for the White River at Petersburg reach by means of a one-dimensional step-backwater model developed by the U.S. Army Corps of Engineers. The hydraulic model was calibrated by using the most current stage-discharge relations at the White River at Petersburg, Ind., and the White River above Petersburg, Ind. (03373890), gages. The calibrated hydraulic model was then used to compute 18 water-surface profiles for flood stages at approximately 1-foot intervals referenced to the streamgage datum and ranging from bankfull to the highest stage of the current stage-discharge rating curve. The simulated water-surface profiles were then combined with a geographic information system digital elevation model to delineate the area flooded at each water level. The availability of these maps along with Internet information regarding current stage from the USGS streamgage at White River at Petersburg, Ind., and forecasted stream stages from the NWS provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures as well as for post-flood recovery efforts.

Indiana

Analyzing indicators of stream health for Minnesota streams

Recent research has emphasized the importance of using physical, chemical, and biological indicators of stream health for diagnosing impaired watersheds and their receiving water bodies. A multidisciplinary team at the University of Minnesota is carrying out research to develop a stream classification system for Total Maximum Daily Load (TMDL) assessment. Funding for this research is provided by the United States Environmental Protection Agency and the Minnesota Pollution Control Agency. One objective of the research study involves investigating the relationships between indicators of stream health and localized stream characteristics. Measured data from Minnesota streams collected by various government and non-government agencies and research institutions have been obtained for the research study. Innovative Geographic Information Systems tools developed by the Environmental Science Research Institute and the University of Texas are being utilized to combine and organize the data. Simple linear relationships between index of biological integrity (IBI) and channel slope, two-year stream flow, and drainage area are presented for the Redwood River and the Snake River Basins. Results suggest that more rigorous techniques are needed to successfully capture trends in IBI scores. Additional analyses will be done using multiple regression, principal component analysis, and clustering techniques. Uncovering key independent variables and understanding how they fit together to influence stream health are critical in the development of a stream classification for TMDL assessment.

Conference Paper

An evaluation of selected extraordinary floods in the United States reported by the U.S. Geological Survey and implications for future advancement of flood science

Thirty flood peak discharges determine the envelope curve of maximum floods documented in the United States by the U.S. Geological Survey. These floods occurred from 1927 to 1978 and are extraordinary not just in their magnitude, but in their hydraulic and geomorphic characteristics. The reliability of the computed discharge of these extraordinary floods was reviewed and evaluated using current (2007) best practices. Of the 30 flood peak discharges investigated, only 7 were measured at daily streamflow-gaging stations that existed when the flood occurred, and 23 were measured at miscellaneous (ungaged) sites. Methods used to measure these 30 extraordinary flood peak discharges consisted of 21 slope-area measurements, 2 direct current-meter measurements, 1 culvert measurement, 1 rating-curve extension, and 1 interpolation and rating-curve extension. The remaining four peak discharges were measured using combinations of culvert, slope-area, flow-over-road, and contracted-opening measurements. The method of peak discharge determination for one flood is unknown. Changes to peak discharge or rating are recommended for 20 of the 30 flood peak discharges that were evaluated. Nine floods retained published peak discharges, but their ratings were downgraded. For two floods, both peak discharge and rating were corrected and revised. Peak discharges for five floods that are subject to significant uncertainty due to complex field and hydraulic conditions, were re-rated as estimates. This study resulted in 5 of the 30 peak discharges having revised values greater than about 10 percent different from the original published values. Peak discharges were smaller for three floods (North Fork Hubbard Creek, Texas; El Rancho Arroyo, New Mexico; South Fork Wailua River, Hawaii), and two peak discharges were revised upward (Lahontan Reservoir tributary, Nevada; Bronco Creek, Arizona). Two peak discharges were indeterminate because they were concluded to have been debris flows with peak discharges that were estimated by an inappropriate method (slope-area) (Big Creek near Waynesville, North Carolina; Day Creek near Etiwanda, California). Original field notes and records could not be found for three of the floods, however, some data (copies of original materials, records of reviews) were available for two of these floods. A rating was assigned to each of seven peak discharges that had no rating. Errors identified in the reviews include misidentified flow processes, incorrect drainage areas for very small basins, incorrect latitude and longitude, improper field methods, arithmetic mistakes in hand calculations, omission of measured high flows when developing rating curves, and typographical errors. Common problems include use of two-section slope-area measurements, poor site selection, uncertainties in Manning’s n -values, inadequate review, lost data files, and insufficient and inadequately described high-water marks. These floods also highlight the extreme difficulty in making indirect discharge measurements following extraordinary floods. Significantly, none of the indirect measurements are rated better than fair, which indicates the need to improve methodology to estimate peak discharge. Highly unsteady flow and resulting transient hydraulic phenomena, two-dimensional flow patterns, debris flows at streamflow-gaging stations, and the possibility of disconnected flow surfaces are examples of unresolved problems not well handled by current indirect discharge methodology. On the basis of a comprehensive review of 50,000 annual peak discharges and miscellaneous floods in California, problems with individual flood peak discharges would be expected to require a revision of discharge or rating curves at a rate no greater than about 0.10 percent of all floods. Many extraordinary floods create complex flow patterns and processes that cannot be adequately documented with quasi-steady, uniform one-dimensional analyses. These floods are most accurately described by multidimensional flow analysis. Within the U.S. Geological Survey, new approaches are needed to collect more accurate data for floods, particularly extraordinary floods. In recent years, significant progress has been made in instrumentation for making direct discharge measurements. During this same period, very little has been accomplished in advancing methods to improve indirect discharge measurements. Greater use of paleoflood hydrology could fill many shortcomings of U.S. Geological Survey flood science today, such as enhanced knowledge of flood frequency. Additional links among flood runoff, storm structure, and storm motion would provide more insight to flood hazards. Significant improvement in understanding flood processes and characteristics could be gained from linking radar rainfall estimation and hydrologic modeling. Additionally, more could be done to provide real-time flood-hazard warnings with linked rainfall/runoff and flow models. Several important recommendations are made to improve the flood-documentation capability of the U.S. Geological Survey. When very large discharges are measured by current meter or hydroacoustics, water-surface slope should be measured as well. This measurement would allow validation of roughness values that can significantly extend the discharge range of verified Manning’s n for 1-dimensional and 2-dimensional flow analyses. At least two of the floods investigated may have had flow so unstable that large waves affected the interpretation of high-water marks. Instability criteria should be considered for hydraulic analysis of large flows in high-gradient, smooth channels. The U.S. Geological Survey needs to modernize its toolbox of field and office practices for making future indirect discharge measurements. These practices could include, first and foremost, a new peak-flow file database that allows greater description and interpretation of flow events, such as stability criteria in high-gradient, smooth channels, debris flow documentation, and details of flood genesis (hurricane, snowmelt, rain-on-snow, dam failure, and the like). Other modernized practices could include (a) establishment of calibrated stream reaches in chronic flash flood basins to expedite indirect computation of flow; (b) development of process-based theoretical rating curves for streamflow-gaging stations; (c) adoption of step-backwater models as the standard surface-water modeling tool for U.S. Geological Survey field offices; (d) development and support for multidimensional flow models capable of describing flood characteristics in complex terrain and high-gradient channels; (e) greater use of the critical-depth method in appropriate locations; (f) deployment of non-contact instruments to directly measure large floods, rather than attempting to reconstruct them; (g) increased use of paleoflood hydrology; and (h) assurance that future collection of hydro-climatic data meets the needs of more robust watershed models.

Scientific Investigations Report

The role of environment and wildlife in human health

In 2007, the U.S. Geological Survey (USGS) developed a science strategy outlining the major natural science issues facing the Nation in the next decade. The science strategy consists of six science directions of critical importance, focusing on areas where natural science can make a substantial contribution to the well-being of the Nation and the world. This fact sheet focuses on the role of environment and wildlife in human health and how USGS research can strengthen the Nation with information needed to meet the challenges of the 21st century.

Fact Sheet

Distribution and condition of young-of-year Lost River and shortnose suckers in the Williamson River Delta restoration project and Upper Klamath Lake, Oregon, 2008-10--Final Report

The Nature Conservancy undertook restoration of the Williamson River Delta Preserve with a primary goal "to restore and maintain the diversity of habitats that are essential to the endangered [Lost River sucker ( Deltistes luxatus ) and shortnose sucker ( Chasmistes brevirostris )] while, at the same time, minimizing disturbance and adverse impacts" (David Evans and Associates, 2005). The Western Fisheries Research Center of the U.S. Geological Survey was asked by the Bureau of Reclamation to assist The Nature Conservancy in assessing the use of the restoration by larval and juvenile suckers. We identified five obtainable objectives to gauge the habitat suitability for young-of-year suckers in the permanently flooded portions of the two most recently restored sections (Goose Bay and Tulana) of the Williamson River Delta Preserve (hereafter referred to as the Preserve) and its effects on the distribution and health of larval and juvenile suckers. Several of these objectives were met through collaborations with The Nature Conservancy, Oregon State University, Oregon Water Science Center, and Leetown Science Center. Our findings were in concurrence with those of The Nature Conservancy, who found that the Preserve supported young-of-year suckers at least as well as adjacent lake habitats (Erdman and others, 2011) despite the prevalence of non-native and piscivorous species in the system. The Preserve was recolonized by all fishes in the regional species pool, both native and non-native, between the time each portion of the Preserve (Goose Bay and Tulana) was inundated in autumn and the following spring. A large number of fish capable of preying on endangered larval suckers and a few fish that could prey on juvenile suckers were captured in the Preserve, but these species were no more abundant in the Preserve than in adjacent lakes. Larvae and age-0, age-1, and age-2 juvenile Lost River and shortnose suckers were captured in the Preserve, Upper Klamath Lake, and Agency Lake, indicating that these species reared in restored and unaltered lake habitats. We captured too few larval suckers to examine patterns in spatial or temporal distribution. Once endangered suckers transitioned into juveniles, as defined by morphological development, they continued to disperse from shallow to deep water throughout the Preserve and into adjacent lakes. Age-1 and age-2 suckers captured throughout the Preserve and in adjacent lake habitats, especially in spring, show continued use of restored habitat by these species. Quantitative examination of habitat use by age-0 juvenile suckers that accounted for imperfect detection indicated the portion of habitat used increased throughout July and August each year until the entire study area was used by one or more age-0 juvenile suckers by the end of August. Our rigorous evaluation showed both restored Preserve and unaltered lake habitats were equally used by age-0 juvenile suckers. Although all sampled habitats were used, multi-state occupancy models indicated that more age-0 suckers occupied shallow rather than deep habitats within the range of depths we sampled (0.5–4.3 m). We were unable to compare health and condition of juvenile suckers among habitats, due to their movement among habitats. However, documentation of length-weight relationships, afflictions and deformities, and histology indicated juvenile suckers captured in all habitats maintained a similar level of health among the 3 years of our study.

Oregon

Hydrogeology and water quality of the Leetown area, West Virginia

The U.S. Geological Survey’s Leetown Science Center and the co-located U.S. Department of Agriculture’s National Center for Cool and Cold Water Aquaculture both depend on large volumes of cold clean ground water to support research operations at their facilities. Currently, ground-water demands are provided by three springs and two standby production wells used to augment supplies during periods of low spring flow. Future expansion of research operations at the Leetown Science Center is dependent on assessing the availability and quality of water to the facilities and in locating prospective sites for additional wells to augment existing water supplies. The hydrogeology of the Leetown area, West Virginia, is a structurally complex karst aquifer. Although the aquifer is a karst system, it is not typical of most highly cavernous karst systems, but is dominated by broad areas of fractured rock drained by a relatively small number of solution conduits. Characterization of the aquifer by use of fluorometric tracer tests, a common approach in most karst terranes, therefore only partly defines the hydrogeologic setting of the area. In order to fully assess the hydrogeology and water quality in the vicinity of Leetown, a multi-disciplinary approach that included both fractured rock and karst research components was needed. The U.S. Geological Survey developed this multi-disciplinary research effort to include geologic, hydrologic, geophysical, geographic, water-quality, and microbiological investigations in order to fully characterize the hydrogeology and water quality of the Leetown area, West Virginia. Detailed geologic and karst mapping provided the framework on which hydrologic investigations were based. Fracture trace and lineament analysis helped locate potential water-bearing fractures and guided installation of monitoring wells. Monitoring wells were drilled for borehole geophysical surveys, water-quality sampling, water-level measurements, and aquifer tests to characterize the quality of water and the hydraulic properties of the aquifer. Surface geophysical surveys provided a 3-dimensional view of bedrock resistivity in order to assess geologic and lithologic controls on ground-water flow. Borehole geophysical surveys were conducted in monitoring wells to assess the storage and movement of water in subsurface fractures. Numerous single-well, multi-well, and straddle packer aquifer tests and step-drawdown tests were conducted to define the hydraulic properties of the aquifer and to assess the role of bedrock fractures and solution conduits in the flow of ground water. Water samples collected from wells and springs were analyzed to assess the current quality of ground water and provide a baseline for future assessment. Microbiological sampling of wells for indicator bacteria and human and animal DNA provided an analysis of agricultural and suburban development impacts on ground-water quality. Light detection and ranging (LiDAR) data were analyzed to develop digital elevation models (DEMs) for assessing sinkhole distribution, to provide elevation data for development of a ground-water flow model, and to assess the distribution of major fractures and faults in the Leetown area. The flow of ground water in the study area is controlled by lithology and geologic structure. Bedrock, especially low permeability units such as the shale Martinsburg Formation and the Conococheague Limestone, act as barriers to water flowing down gradient and across bedding. This retardation of cross-strike flow is especially pronounced in the Leetown area, where bedding typically dips at steep angles. Highly permeable fault and fracture zones that disrupt the rocks in cross-strike directions provide avenues through which ground water can flow laterally across or through strata of low primary permeability. Significant strike parallel thrust faults and cross-strike faults typically coincide with larger solution conduits and act as drains for the more pervasive network of interconnected diffuse fractures. Results of borehole geophysical surveys indicate that although numerous fractures may intersect a borehole, only one or two of the fractures typically transmit most of the water to a well. The diffuse-flow dominated network of fractures that provides the majority of storage occupies only a small proportion of the total aquifer volume but constitutes the majority of porosity within the aquifer. Solution conduits, while occupying a relatively small volume of the overall aquifer, are especially important because they serve as primary drains for the ground-water flow system. Surface resistivity maps and cross-sectionsshow anomalous areas of low resistivities coincident with the prevailing geologic strike at N. 20º E., with major cross-strike faults, and with major springs in the region. Transmissivity derived from straddle packer tests was highly variable, and ranged over three orders of magnitude (1.8 x 10 -6 to 5.9 x 10 -3 ft 2 /d) in diffuse-flow fractures. A similar large variability in transmissivity was documented by single- and multi-well aquifer tests conducted in conduit-flow dominated portions of the aquifer (2.0 x 10 3 to 1.4 x 10 4 ft 2 /d) in lowland areas immediately adjacent to the Leetown Science Center. A stream-gaging station installed on Hopewell Run near the point where the stream exits the Leetown watershed indicates average daily streamflow for the Hopewell Run of approximately 11.2 ft 3 /s, and ranged from a minimum of 1.80 ft 3 /s on September 28, 2005, to a maximum of 73.0 ft 3 /s on December 11, 2003. Base-flow (ground-water) discharge surveys identified numerous small seeps adjacent to streams in the area. Hydrographs of the stage of Balch Spring show rapid response to individual storms. Strong correlation of the flow of Hopewell Run and Balch Spring indicates the nearby losing stream reach is partly responsible for higher fluctuations in the stage of Balch Spring. A water budget for the study period (2003-2005), based on measured precipitation and hydrograph analyses, is expressed as Precipitation (38.60 in/yr) = Surface Runoff (1.36 in/yr) + Ground-Water Discharge (17.73 in/yr) + Evapotranspiration (24.23 in/yr) – Change in storage (4.72 in/yr). Flow of ground water through the epikarst, a shallow zone of intensely weathered rock and regolith, can be rapid (on the order of days or weeks) as flow is concentrated in solution conduits. Flow within the intermediate and deeper zones is typically much slower. Eight dye-tracer tests conducted in the Leetown area found ground-water flow patterns to be divergent, with velocities ranging from about 12.5 to 610 ft/day and a median velocity of 50 ft/day. Estimates of ground-water age in carbonate rocks in the region are on the order of 15 years in the shallower portions of the aquifer to 50 years or older for deeper portions of the aquifer. Shallow springs can have a significant component of fairly young water (< 5 years in age). Ground-water samples collected from 16 sites (12 wells and 4 springs) in the Leetown area were analyzed for more than 340 constituents. Only turbidity, indicator bacteria, and radon were typically present in concentrations exceeding U.S. Environmental Protection Agency (USEPA) drinking-water or aquatic life standards.

West Virginia

Northern Prairie Wildlife Research Center

The Northern Prairie Wildlife Research Center (NPWRC) conducts integrated research to fulfill the Department of the Interior's responsibilities to the Nation's natural resources. Located on 600 acres along the James River Valley near Jamestown, North Dakota, the NPWRC develops and disseminates scientific information needed to understand, conserve, and wisely manage the Nation's biological resources. Research emphasis is primarily on midcontinental plant and animal species and ecosystems of the United States. During the center's 40-year history, its scientists have earned an international reputation for leadership and expertise on the biology of waterfowl and grassland birds, wetland ecology and classification, mammalian behavior and ecology, grassland ecosystems, and application of statistics and geographic information systems. To address current science challenges, NPWRC scientists collaborate with researchers from other U.S. Geological Survey centers and disciplines (Biology, Geography, Geology, and Water) and with biologists and managers in the Department of the Interior (DOI), other Federal agencies, State agencies, universities, and nongovernmental organizations. Expanding upon its scientific expertise and leadership, the NPWRC is moving in new directions, including invasive plant species, restoration of native habitats, carbon sequestration and marketing, and ungulate management on DOI lands.

Fact Sheet

U and Sr Isotopes in ground water and calcite, Yucca Mountain, Nevada: Evidence against upwelling water

Hydrogenic calcite and opaline silica deposits in fault zones at Yucca Mountain, Nevada, have created considerable public and scientific controversy because of the possible development of a high-level nuclear waste repository at this location. Strontium and uranium isotopic compositions of hydrogenic materials were used to test whether the veins could have formed by upwelling of deep-seated waters. The vein deposits are isotopically distinct from ground water in the two aquifers that underlie Yucca Mountain, indicating that the calcite could not have precipitated from ground water. The data are consistent with a surficial origin for the hydrogenic deposits.

Nevada

Management implications of the science: Chapter 7 in A synthesis of aquatic science for management of Lakes Mead and Mohave

Lake Mead, particularly its Boulder Basin, is one of the most intensively monitored reservoirs in the United States. With its importance to societal needs and ecosystem benefits, interest in water quality and water resources of Lake Mead will remain high. A number of agencies have authorities and management interests in Lake Mead and maintain individual agency monitoring programs. These programs were enhanced on an interagency basis from 2004 to 2012 to facilitate intensive monitoring in all major basins of the lake. Recognition that increasing stressors and influences in individual basins can affect water quality throughout Lake Mead and gave rise to an even stronger effort towards the development of holistic and effective interagency approaches. In 2010, agency monitoring programs were used to develop a management plan for water-dependent resources at Lake Mead National Recreation Area (LMNRA). The Long-Term Limnological and Aquatic Resource Monitoring and Research Plan for Lakes Mead and Mohave (the Plan; National Park Service, 2010) documented key management questions to be addressed through monitoring and research, and identified interagency strategic objectives for water quality and water-dependent resources. Moreover, the Plan provides a framework for summarizing water quality and water resource information in five resource categories: water quality and limnology; fish and aquatic biota; sediments; birds; and riparian vegetation. The Plan also addresses three stressors to lake resources: contaminants, invasive species, and climate change. For each of these topics, the current (2012) state of knowledge is summarized for LMNRA (table 7-1), including key scientific questions and findings, management implications, and information needs. A more detailed discussion for each topic follows.

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