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USGS2011

Biological review of 82 species of coral petitioned to be included in the Endangered Species Act

list 83 coral species as threatened or endangered under the U.S. Endangered Species Act. The petition was based on a predicted decline in available habitat for the species, citing anthropogenic climate change and ocean acidification as the lead factors among the various stressors responsible for the potential decline. The NMFS identified 82 of the corals as candidate species, finding that the petition provided substantive information for a potential listing of these species. The NMFS established a Biological Review Team (BRT) to prepare this Status Review Report that examines the status of these 82 candidate coral species and evaluates extinction risk for each of them. This document makes no recommendations for listing, as that is a separate evaluation to be conducted by the NMFS. The BRT considered two major factors in conducting this review. The first factor was the interaction of natural phenomena and anthropogenic stressors that could potentially contribute to coral extinction. After extensive review of available scientific information, the BRT considers ocean warming, disease, and ocean acidification to be the most influential threats in posing extinction risks to the 82 candidate coral species between now and the year 2100. Threats of local origin but having widespread impact, such as sedimentation, nutrient enrichment, and fishing, were considered of medium importance in determining extinction risks. It is acknowledged that many other threats (e.g., physical damage from storms or ship groundings, invasive species or predator outbreaks, collection and trade) also negatively affect corals, often acutely and dramatically, but generally at relatively small local scales. These local threats were considered to be of limited scope and not deemed to contribute appreciably to the risk of species extinction, except in those special cases where species have restricted geographic or habitat ranges or species have already undergone precipitous population declines such that these local threats further contribute to depensatory processes that can magnify extinction risks (e.g., feedback-loops whereby individual survival decreases with smaller population size). The BRT acknowledges that local and global threats operate on different time scales and, though there is high confidence in the general progression of some key global threats, such as ocean warming and ocean acidification, there is much less certainty in the timing and spatial patterns of these threats. There is also substantial uncertainty in the abilities of the 82 candidate coral species to tolerate or adapt to each of the threats examined, as well as uncertainty in the dynamics of multiple simultaneous stresses. The BRT specifically identified increasing human population levels and the intensity of their collective human consumption as the root drivers of almost all global and local threats to coral species. In evaluating future threat impacts, the BRT attempted to project current trends, without assumptions of future policy changes or technological advances that could potentially alter the projections used in this analysis.

NOAA Technical Memorandum↗

USGS1989

Hydrological, morphometrical, and biological characteristics of the connecting rivers of the International Great Lakes: a review

The connecting channels of the Great Lakes are large rivers (1, 200-9, 900 m3 • s-1) with limited tributary drainage systems and relatively stable hydrology (about 2:1 ration of maximum to minimum flow). The rivers, from headwaters to outlet, are the St. Marys, St. Clair, Detroit, Niagara, and St. Lawrence. They share several characteristics with certain other large rivers: the fish stocks that historically congregated for spawning or feeding have been overfished, extensive channel modification have been made, and they have been used as a repository for domestic and industrial wastes and for hydroelectric energy generation. Levels of phosphorus, chlorophyll a, and particulate organic matter increase 3- to 5-fold from the St. Marys River to the St. Lawrence River. Biological communities dependent on nutrients in the water column, such as phytoplankton, periphyton, and zooplankton similarly increase progressively downstream through the system. The standing crop of emergent macrophytes is similar in all of the rivers, reflecting the relatively large nutrient pools in the sediments and atmosphere. Consequently, emergent macrophytes are an important source of organic matter (67% of total primary production) in the nutrient poor waters of the St. Marys River, whereas phytoplankton production dominates (76%) in the enriched St. Lawrence River. Submersed and emergent macrophytes and the associated periphyton are major producers of organic matter in the connecting channels. Another major source of organic matter (measured as ash free dry weight, AFDW) in the Detroit River is sewage, introduced at a rate of 26, 000 t per year. The production of benthos ranges from a low 5.4 g AFDW•m-2 in the Detroit River to a high of 15.5 g AFDW•m-2 in the St. Marys River. The rivers lack the organic transport from riparian sources upstream but receive large amounts of high quality phytoplankton and zooplankton from the Great Lakes.

Canadian Special Publication of Fisheries and Aqua↗

USGS1983

Nesting biology of laughing gulls in relation to agricultural chemicals in south Texas USA 1978-1981

Various aspects of the breeding biology of Laughing Gulls ( Larus atricilla ) have been studied extensively in Florida (Dinsmore and Schreiber 1974, Schreiber et al. 1979, Schreiber and Schreiber 1980), New Jersey (Bongiorno 1970, Burger and Beer 1976, Burger 1976, Montevecchi 1978), and Massachusetts (Noble and Wurm 1943), but little is known of their yearly fledging success in Texas or elsewhere. The Laughing Gull is a common colonial nester along most of the Texas coast, second only to the Cattle Egret ( Bubulcus ibis ) in breeding abundance; however, the Laughing Gull may be threatened in Texas because of suspected declines at certain traditional nesting locales (Blacklock et al. 1979). Since Laughing Gulls often nest in proximity to agricultural and industrial areas, we were concerned that environmental pollutants might be adversely affecting productivity. In 1978-1981 we conducted studies along the south Texas coast to learn more about the nesting ecology of Laughing Gulls and to evaluate the effects of environmental contaminants on reproduction.

Texas↗

USGS2002

Reproductive biology of four freshwater mussels (Bivalvia: Unionidae) endemic to eastern Gulf Coastal Plain drainages of Alabama, Florida, and Georgia

The reproductive biology and glochidial shell morphology of three federally endangered freshwater mussels, the fat threeridge, Amblema neislerii; Gulf moccasinshell, Medionidus penicillatus; and oval pigtoe, Pleurobema pyriforme; and one federally threatened mussel, the purple bankclimber, Elliptoideus sloatianus, were studied from May 1995 to June 1997 in the Apalachicola, Flint, and Ochlockonee river drainages of Florida and Georgia. Gravid A. neislerii were found in early June. Laboratory experiments indicated that five fish species served as hosts: weed shiner, Notropis texanus; bluegill, Lepomis macrochirus; redear sunfish, L. microlophus; largemouth bass, Micropterus salmoides; and blackbanded darter, Percina nigrofasciata. Elliptoideus sloatianus were found gravid from late February through mid-April. None of the 14 fish species exposed to E. sloatianus glochidia resulted in the identification of a primary host fish. Medionidus penicillatus were found gravid during September, November, March, and April. The brown darter, Etheostoma edwini, and blackbanded darter, Percina nigrofasciata, were identified as primary host fishes for M. penicillatus. Pleurobema pyriforme were found gravid from March through July. Only the sailfin shiner, Pleronotropis hypsehpterus, was identified as a primary host fish for P. pyriforme. Glochidial shell morphology of A. neislerii, M. penicillatus, and P. pyriforme were similar to other species in their respective genera. The glochidia of the monotypic species E. sloatianus were morphologically most similar to Epioblasma brevidens and E. capsaeformis.

American Malacological Bulletin↗

USGS2012

Inferring local competition intensity from patch size distributions: a test using biological soil crusts

Dryland vegetation is inherently patchy. This patchiness goes on to impact ecology, hydrology, and biogeochemistry. Recently, researchers have proposed that dryland vegetation patch sizes follow a power law which is due to local plant facilitation. It is unknown what patch size distribution prevails when competition predominates over facilitation, or if such a pattern could be used to detect competition. We investigated this question in an alternative vegetation type, mosses and lichens of biological soil crusts, which exhibit a smaller scale patch-interpatch configuration. This micro-vegetation is characterized by competition for space. We proposed that multiplicative effects of genetics, environment and competition should result in a log-normal patch size distribution. When testing the prevalence of log-normal versus power law patch size distributions, we found that the log-normal was the better distribution in 53% of cases and a reasonable fit in 83%. In contrast, the power law was better in 39% of cases, and in 8% of instances both distributions fit equally well. We further hypothesized that the log-normal distribution parameters would be predictably influenced by competition strength. There was qualitative agreement between one of the distribution's parameters (μ) and a novel intransitive (lacking a 'best' competitor) competition index, suggesting that as intransitivity increases, patch sizes decrease. The correlation of μ with other competition indicators based on spatial segregation of species (the C-score) depended on aridity. In less arid sites, μ was negatively correlated with the C-score (suggesting smaller patches under stronger competition), while positive correlations (suggesting larger patches under stronger competition) were observed at more arid sites. We propose that this is due to an increasing prevalence of competition transitivity as aridity increases. These findings broaden the emerging theory surrounding dryland patch size distributions and, with refinement, may help us infer cryptic ecological processes from easily observed spatial patterns in the field.

Oikos↗

USGS2013

Quagga and zebra mussels: biology, impacts, and control

Quagga and Zebra Mussels: Biology, Impacts, and Control , Second Edition provides a broad view of the zebra/quagga mussel issue, offering a historic perspective and up-to-date information on mussel research. Comprising 48 chapters, this second edition includes reviews of mussel morphology, physiology, and behavior. It details mussel distribution and spread in Europe and across North America, and examines policy and regulatory responses, management strategies, and mitigation efforts. In addition, this book provides extensive coverage of the impact of invasive mussel species on freshwater ecosystems, including effects on water clarity, phytoplankton, water quality, food web changes, and consequences to other aquatic fauna. It also reviews and offers new insights on how zebra and quagga mussels respond and adapt to varying environmental conditions. This new edition includes seven video clips that complement chapter text and, through visual documentation, provide a greater understanding of mussel behavior and distribution.

Book↗

USGS2015

Infectious diseases, parasites, and biological toxins in sea ducks

This chapter addresses disease agents in the broad sense, including viruses, bacteria, fungi, protozoan and helminth parasites, and biological toxins. Some of these agents are known to cause mortality in sea ducks, some are thought to be incidental findings, and the significance of others is yet poorly understood. Although the focus of the chapter is on free-living sea ducks, the study of disease in this taxonomic group has been relatively limited and examples from captive sea ducks and other wild waterfowl are used to illustrate the pathogenicity of certain diseases. Much of the early work in sea ducks consisted of anecdotal and descriptive reports of parasites, but it was soon recognized that diseases such as avian cholera, renal coccidiosis, and intestinal infections with acanthocephalans were causes of mortality in wild populations. More recently, adenoviruses, reoviruses, and the newly emergent Wellfleet Bay virus, for example, also have been linked to die-offs of sea ducks. Declining populations of animals are particularly vulnerable to the threats posed by disease and it is important that we improve our understanding of the significance of disease in sea ducks. To conclude, we offer our recommendations for future directions in this field.

Book chapter↗

USGS2014

Lessons from the 1989 Exxon Valdez oil spill: A biological perspective

On March 24, 1989, the tanker vessel Exxon Valdez altered its course to avoid floating ice, and ran aground on Bligh Reef in northeastern Prince William Sound (PWS), Alaska (Figure 1). The tanker was carrying about 53 million gallons of Prudhoe Bay crude, a heavy oil, and an estimated 11 million gallons spilled (264,000 barrels or about 42 million liters) in what was, prior to the Deepwater Horizon (DWH) spill of 2010, the largest accidental release of oil into U.S. waters (Morris and Loughlin 1994; Spies et al. 1996; Shigenaka 2014). Following the Exxon Valdez oil spill (EVOS), a broad range of studies was implemented and 25 years later, monitoring and research efforts to understand the long-term impacts of the spill continue, although now at a lesser intensity. The Exxon Valdez and DWH spills differed in many ways (Plater 2010; Atlas and Hazen 2011; Sylves and Comfort 2012), but there are also similarities, and lessons from the EVOS experience may offer valuable insights as research efforts proceed in the wake of the DWH spill. Here we provide an overview of the EVOS, summarize key findings from several long-term biological research programs, and conclude with some considerations of lessons learned after two and a half decades of study.

Alaska↗

USGS2015

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2014

In 2014, the USGS LEBS successfully completed large vessel surveys in all three of Lake Erie’s basins. Lake Erie Biological Station’s primary vessel surveys included the Western Basin Forage Fish Assessment and East Harbor Forage Fish Assessment as well as contributing to the cooperative multi-agency Central Basin Hydroacoustics Assessment, the Eastern Basin Coldwater Community Assessment, and LTLA (see FTG, CWTG, and FTG reports, respectively). Results from the surveys contribute to Lake Erie Committee Task Group data needs and analyses of trends in Lake Erie’s fish communities. The cruise survey schedule in 2014 was greatly increased by LEBS’s participation in the Lake Erie CSMI, which consisted of up-to two weeks of additional sampling per month from April to October. CSMI is a bi-national effort that occurs at Lake Erie every five years with the purpose of addressing data and knowledge gaps necessary to management agencies and the Lake Erie LaMP. LEBS deepwater science capabilities also provided a platform for data collection by Lake Erie investigators from multiple agencies and universities including: the USGS GLSC, ODW, KSU, OSU, UM, PU, UT, and the USNRL. Samples from this survey are being processed and a separate report of the findings will be made available in a separate document. Our 2014 vessel operations were initiated in mid-April, as soon after ice-out as possible, and continued into early December. During this time, crews of the R/V Muskie and R/V Bowfin deployed 196 bottom trawls covering 48.5 km of lake-bottom, nearly 6 km of gillnet, collected data from 60 hydroacoustics transects, 285 lower trophic (i.e., zooplankton and benthos) samples, and 330 water quality measures (e.g., temperature profiles, water samples). Thus, 2014 was an intensive year of field activity. Our June and September bottom trawl surveys in the Western Basin were numerically dominated by Emerald Shiner, White Perch, and Yellow Perch; however, Freshwater Drum were dominant by biomass. Age-2+ Yellow Perch and White Perch diets from our western basin trawl had highest occurrences of benthic invertebrates in spring and fall. Hexagenia spp. accounted for >25% of Yellow Perch and White Perch diet composition (dry weight) in spring. We conducted an analysis using data from the past 6 years of our East Harbor survey to determine to what degree our new research vessel and trawl is affecting our ability to detect trends across the 50+ year time series. We also evaluated trends in water temperatue, dissolved oxygen, secchi depth and total Phosphorus from our LTLA sites near Vermilion, Ohio. Within the following report sections, we describe specific results from our primary surveys conducted in 2014.

Report↗

USGS2015

Book review: Biology and conservation of North American tortoises

The charismatic North American tortoises hold a special place in our culture and natural history. Despite the perseverance of these tortoises over millions of years, biologists now question their ability to persist into the future. In light of documented declines, habitat loss, and numerous threats to tortoise populations, the editors gathered a diverse group of researchers to review what we have learned about this group after decades of study, to summarize gaps in the literature, and to reflect on how we may use the current state of knowledge to conserve these fascinating species. Initially intended as a focused review of the two most well-studied species in the genus Gopherus , G. agassizii (Mohave Desert Tortoise) and G. polyphemus (Gopher Tortoise), the book developed into a comprehensive treatment of the entire genus. The editors offer the work as a resource to professional biologists and agencies working with North American tortoises as well as a teaching aid, hobbyist’s reference, and casual read for nature-lovers—although we presume that the former group is more likely to benefit than the latter. Although the book’s size appears modest, the content delivers an in-depth look at the five recognized tortoise species. Review info: Biology and Conservation of North American Tortoises. Edited by David C. Rostal, Earl D. McCoy, and Henry R. Mushinsky, 2014. ISBN 978-1421413778, 190 pp.

Herpetological Review↗

USGS2003

Soil fertility in deserts: A review on the influence of biological soil crusts and the effect of soil surface disturbance on nutrient inputs and losses

Sources of desert soil fertility include parent material weathering, aeolian deposition, and on-site C and N biotic fixation. While parent materials provide many soil nutrients, aeolian deposition can provide up to 75% of plant-essential nutrients including N, P, K, Mg, Na, Mn, Cu, and Fe. Soil surface biota are often sticky, and help retain wind-deposited nutrients, as well as providing much of the N inputs. Carbon inputs are from both plants and soil surface biota. Most desert soils are protected by cyanobacterial-lichen-moss soil crusts, chemical crusts and/or desert pavement. Experimental disturbances applied in US deserts show disruption of soil surfaces result in decreased N and C inputs from soil biota by up to 100%. The ability to glue aeolian deposits in place is compromised, and underlying soils are exposed to erosion. The ability to withstand wind increases with biological and physical soil crust development. While most undisturbed sites show little sediment production, disturbance by vehicles or livestock produce up to 36 times more sediment production, with soil movement initiated at wind velocities well below commonly-occurring wind speeds. Soil fines and flora are often concentrated in the top 3 mm of the soil surface. Winds across disturbed areas can quickly remove this material from the soil surface, thereby potentially removing much of current and future soil fertility. Thus, disturbances of desert soil surfaces can both reduce fertility inputs and accelerate fertility losses.

Conference Paper↗

USGS1989

Nesting biology of pacific loons, Gavia pacifica, on the Yukon-Kuskokwim Delta, Alaska

The nesting biology of Pacific Loons, Gavia pacifica , was studied from 1973 to 1975 on the Yukon-Kuskokwim Delta, Alaska. Loons maintained territories on ponds throughout the pre-nesting period. Both adults incubated eggs and raised the young. Males incubated more than females during early incubation, and females more than males during late incubation. The female assumes much of the early brood rearing, with the male assisting more when food demands of young increase later in brood rearing.

Alaska↗

USGS1999

Yellowstone and the biology of time: Photographs across a century

Established in 1872, Yellowstone National Park is the oldest and one of the largest national parks in the world. In this remarkable book, scientists Mary Meagher and Douglas B. Houston present 100 sets of photographs that compare the Yellowstone of old with the park of today. Most of the photo sets include three pictures-not the usual two-with many of the original views dating back to the 1870s and 1880s. From the same photo points used by early photographers, Meagher and Houston rephotographed the scenes in the 1970s, and then, following the great fires of 1988, again in the 1990s. The result is an illuminating record of Yellowstone’s dynamic ecosystem and its changes over time. Through close analysis of the photos and reference to the vast amount of available data, Meagher and Houston describe changes in vegetation, growth of wildlife populations, the effect of beaver occupancy on wetland areas, and geothermal and elevational shifts. At the same time they point out the extent to which many sites have not changed-despite important switches in park policy and an increase in human activity. Yellowstone National Park has long been the focus of major ecological debates. Should managers allow wildfires to burn? Should the elk and bison populations be controlled? Are too many people visiting the park? Yellowstone And The Biology Of Time offers a wealth of information to help us answer these questions. A visual treasure, this book will be of value to scientists from various disciplines as well as to the many people who care about Yellowstone and other protected wilderness areas around the world.

Yellowstone National Park↗

USGS1994

Biology of North American tortoises

Chelonians have fascinated people for centuries and have been the object of biological studies for nearly as long. Perhaps the long life span and harmless demeanor of most species contribute to their wide appeal. they also represent a link to the distant past because their characteristic shell separated this line of ectotherms from all other reptiles and all other animals in the age of dinosaurs (Pough et al. 1989). However, the origins of chelonians remain a mystery.

Fish and Wildlife Research↗

USGS2005

Benthic habitats and the effects of fishing: Linking geology, biology, socioeconomics, and management in fisheries: An introduction

Fishery resource managers face the challenge of ensuring sustainable fisheries and maintaining healthy, diverse ecosystems. This challenge can be met by advancing the scientific knowledge available to resource managers to evaluate and appropriately manage fishing activities that affect benthic habitats. Government agencies have been working to develop benthic habitat research initiatives focused on the effects of fishing gear and the linkage between biological resources and the geology of benthic habitats. This book provides the broad understanding of the effects of fishing activities on benthic habitats necessary to address the pressing issues of habitat alteration that challenge managers, practitioners, and ocean scientists.

Conference Paper↗

USGS2019

Observations on the range and nesting biology of the Mexican endemic rufous-capped brush-finch (Atlapetes Pileatus Pileatus)

The Rufous-capped Brush-finch ( Atlapetes pileatus ) is a species endemic to Mexico, whose breeding biology has received little attention. We studied two nests of the nominate subspecies from the mountains of southern Sonora. Nests were untidy, broad, open cups, placed in low, thick vegetation. Clutch size at one nest consisted of three immaculate white eggs. The second nest contained two Brush-finch nestlings and one cowbird ( Molothrus sp.) nestling. Both parents brought food to the nestlings, but delivered significantly more food to the cowbird nestling. Most of our observations of nest architecture, egg coloration, and adult behaviors are consistent with previous descriptions for Rufous-capped Brush-finch and other members of the genus Atlapetes . This is the first report of cowbird brood-parasitism on the Rufous-capped Brush-finch, as well as the first confirmed record of breeding by this species in Sonora.

Ornitología Neotropical↗

USGS2022

Hawaiian forest bird conservation strategies for minimizing the risk of extinction: biological and biocultural considerations

The iconic forest birds of Hawai‘i are facing a conservation crisis. Across the Hawaiian Islands, native forest birds have been experiencing population declines that have accelerated in the last one to two decades. While habitat loss, invasive species, and non-native predators have negatively affected forest bird species for hundreds of years, and continue to do so, introduced diseases, particularly avian malaria, are the greatest threat to forest birds today. Further, climate change has increased temperatures in the high-elevation forests, facilitating the spread of disease into areas that were once largely disease-free. Rapid population declines have now (2022) pushed four Hawaiian honeycreeper species to the brink of extinction: the endangered ‘akikiki ( Oreomystis bairdi ) and ‘akeke‘e ( Loxops caeruleirostris ) on Kaua‘i Island, and kiwikiu ( Pseudonestor xanthophrys ) and ‘ākohekohe ( Palmeria dolei ) on Maui Island. The biologists that study these birds strongly agree that without a rapid conservation response to the threat of increasing disease mortality there is a high probability these species will go extinct in the coming decade. To help evaluate alternative conservation strategies for minimizing the risk of extinction, we convened diverse groups of experts with broad experience in Hawai‘i forest birds and ecosystems, as well as the management approaches being considered, to assess the probability of success of alternative management actions. In addition to assessing this crisis from a biological perspective, we convened a group of Native Hawaiian participants that have a strong connection to the forest birds, forests, and the integration of their culture in natural and biocultural resource management. They give voice to the significance of forest birds to Native Hawaiians and provide their perspectives on alternative management actions. Broadly, the three alternative management actions being considered to prevent the extinction of forest birds from the increasing threat of disease are (1) landscape-level mosquito control through the Wolbachia incompatible insect technique, (2) captive care, and (3) conservation translocations. The two key components of the problem of preventing extinction in these four bird species is time and risk. For each species, very few individuals remain, and they are all in danger of imminent extinction. Each management action takes time to implement, which might exceed the actual time to extinction. Additionally, each of these conservation actions has potential benefits and inherent risks, as well as substantial uncertainty in terms of being successful. Native Hawaiian perspectives and considerations also vary across the conservation actions. The expert evaluations summarized in this report provide a broad assessment of conservation strategies that could be undertaken to prevent the extinction of ‘akikiki, ‘akeke‘e, kiwikiu, and ‘ākohekohe. While this report does not recommend specific actions, the information is intended to support decision-makers as they assess which, if any, conservation strategies to pursue.

Hawaii↗

USGS2022

Biology: Integrating core to essential variables (Bio-ICE) task team report for marine mammals

Marine mammals are wide-ranging, relatively long-lived organisms that play a crucial role in maintaining healthy ocean ecosystems. Often referred to as ecosystem engineers and sentinel species in marine ecosystems, these charismatic megafauna feed at a variety of trophic levels, affecting food web dynamics and cycling of chemicals and nutrients in the water column as well as in benthic habitats, both nearshore and in the deep ocean. An understanding of their abundance and distribution is an essential starting point for evaluating their role in ocean ecosystems. Accordingly, marine mammals have been included among key variables to monitor in ocean observing systems, from core variables for the U.S. Integrated Ocean Observing System (IOOS) to an Essential Ocean Variable (EOV) for the Global Ocean Observing System (GOOS). They also contribute to several Essential Biodiversity Variables (EBVs) for the Group on Earth Observations Biodiversity Observation Network (GEO BON). Further, evaluation of the health of marine mammal populations will help deliver societal benefits by contributing to the UN Decade of Ocean Science for Sustainable Development; informing reporting activities such as the World Ocean Assessment; and supporting achievement of Sustainable Development Goal 14, the post-2020 framework for the Convention for Biological Diversity, and a new treaty for conservation and sustainable use of marine biodiversity beyond national jurisdiction. In the U.S., the National Marine Fisheries Service (NMFS) and the U.S. Fish and Wildlife Service (FWS) are required to produce stock assessments for marine mammals under the Marine Mammal Protection Act (MMPA, 16 U.S.C. §1371 et seq.). Stock assessment analyses require accurate, up to-date information on abundance and distribution to inform appropriate management and/or conservation measures. Despite the availability of information on abundance and distribution within the stock assessment reports, availability and accessibility of the underlying data to the broader ocean observing community and contribution to EOVs remain inconsistent.

Report↗