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Conservation, biodiversity and infectious disease: scientific evidence and policy implications

Habitat destruction and infectious disease are dual threats to nature and people. The potential to simultaneously advance conservation and human health has attracted considerable scientific and popular interest; in particular, many authors have justified conservation action by pointing out potential public health benefits . One major focus of this debate—that biodiversity conservation often decreases infectious disease transmission via the dilution effect—remains contentious. Studies that test for a dilution effect often find a negative association between a diversity metric and a disease risk metric, but how such associations should inform conservation policy remains unclear for several reasons. For one, diversity and infection risk have many definitions, making it possible to identify measures that conform to expectations. Furthermore, the premise that habitat destruction consistently reduces biodiversity is in question, and disturbance or conservation can affect disease in many ways other than through biodiversity change. To date, few studies have examined the broader set of mechanisms by which anthropogenic disturbance or conservation might increase or decrease infectious disease risk to human populations. Due to interconnections between biodiversity change, economics and human behaviour, moving from ecological theory to policy action requires understanding how social and economic factors affect conservation. This Theme Issue arose from a meeting aimed at synthesizing current theory and data on ‘biodiversity, conservation and infectious disease’ (4–6 May 2015). Ecologists, evolutionary biologists, economists, epidemiologists, veterinary scientists, public health professionals, and conservation biologists from around the world discussed the latest research on the ecological and socio-economic links between conservation, biodiversity and infectious disease, and the open questions and controversies in these areas. By combining ecological understanding with insights from the social and economic sciences, the papers in this Theme Issue address the complex relationships, patterns and ecological mechanisms that influence conservation, infectious disease, and the policy options available to protect nature and human health.

Philosophical Transactions of the Royal Society B:

What did they just say? Building a Rosetta stone for geoscience and machine learning

Modern advancements in science and engineering are built upon multidisciplinary projects that bring experts together from different fields. Within their respective disciplines, researchers rely on precise terminology for specific ideas, principles, methods, and theories. Hence, the potential for miscommunication is substantial, especially when common words have been adopted by one (or both) group(s) to represent very specific, precise, but, perhaps, different concepts. Under the best circumstances, misunderstanding key terms will lead toward a breakdown of efficiency. Under less optimal conditions, miscommunication will sow frustration, lead to errors, and inhibit scientific breakthroughs. Here, our research group of geoscientists and machine learning experts presents a process to help geoscientists understand the fundamentals of supervised learning by describing the general workflow (i.e., a conceptual pipeline) for supervised learning that must be understood by all the parties involved in a geoscience-machine learning endeavor. Terms critical for machine learning are introduced, defined, and used within the context of an overly simplified mock hydrological study to illustrate their appropriate usage, and then used again in the context of a published geothermal-machine learning study. These key terms are divided into two groups, which are 1) essential to the field of machine learning but are predominantly absent in geoscience or 2) homonyms (i.e., words with the same spelling or pronunciation but with different meanings) between the fields. Lastly, we discuss a few other important homonyms that were not introduced in the general workflow but arise regularly in machine learning applications

Conference Paper

Excursions in fluvial (dis)continuity

Lurking below the twin concepts of connectivity and disconnectivity are their first, and in some ways, richer cousins: continuity and discontinuity. In this paper we explore how continuity and discontinuity represent fundamental and complementary perspectives in fluvial geomorphology, and how these perspectives inform and underlie our conceptions of connectivity in landscapes and rivers. We examine the historical roots of continuum and discontinuum thinking, and how much of our understanding of geomorphology rests on contrasting views of continuity and discontinuity. By continuum thinking we refer to a conception of geomorphic processes as well as geomorphic features that are expressed along continuous gradients without abrupt changes, transitions, or thresholds. Balance of forces, graded streams, and hydraulic geometry are all examples of this perspective. The continuum view has played a prominent role in diverse disciplinary fields, including ecology, paleontology, and evolutionary biology, in large part because it allows us to treat complex phenomena as orderly progressions and invoke or assume equilibrium processes that introduce order and prediction into our sciences. In contrast the discontinuous view is a distinct though complementary conceptual framework that incorporates non-uniform, non-progressive, and non-equilibrium thinking into understanding geomorphic processes and landscapes. We distinguish and discuss examples of three different ways in which discontinuous thinking can be expressed: 1) discontinuous spatial arrangements or singular events; 2) specific process domains generally associated with thresholds, either intrinsic or extrinsic; and 3) physical dynamics or changes in state, again often threshold-linked. In moving beyond the continuous perspective, a fertile set of ideas comes into focus: thresholds, non-equilibrium states, heterogeneity, catastrophe. The range of phenomena that is thereby opened up to scientific exploration similarly expands: punctuated episodes of cutting and filling, discretization of landscapes into hierarchies of structure and control, the work of extreme events. Orderly and progressive evolution towards a steady or ideal state is replaced by chaotic episodes of disturbance and recovery. Recent developments in the field of geomorphology suggest that we may be on the cusp of a new paradigm that recognizes that both continuous and discontinuous processes and mechanisms play a role in fluvial processes and landscape evolution with neither holding sway over the other and both needed to see rivers as they are.

Geomorphology

Applied Geochemistry Special Issue on Environmental geochemistry of modern mining

Environmental geochemistry is an integral part of the mine-life cycle, particularly for modern mining. The critical importance of environmental geochemistry begins with pre-mining baseline characterization and the assessment of environmental risks related to mining, continues through active mining especially in water and waste management practices, and culminates in mine closure. The enhanced significance of environmental geochemistry to modern mining has arisen from an increased knowledge of the impacts that historical and active mining can have on the environment, and from new regulations meant to guard against these impacts. New regulations are commonly motivated by advances in the scientific understanding of the environmental impacts of past mining. The impacts can be physical, chemical, and biological in nature. The physical challenges typically fall within the purview of engineers, whereas the chemical and biological challenges typically require a multidisciplinary array of expertise including geologists, geochemists, hydrologists, microbiologists, and biologists. The modern mine-permitting process throughout most of the world now requires that potential risks be assessed prior to the start of mining. The strategies for this risk assessment include a thorough characterization of pre-mining baseline conditions and the identification of risks specifically related to the manner in which the ore will be mined and processed, how water and waste products will be managed, and what the final configuration of the post-mining landscape will be. In the Fall 2010, the Society of Economic Geologists held a short course in conjunction with the annual meeting of the Geological Society of America in Denver, Colorado (USA) to examine the environmental geochemistry of modern mining. The intent was to focus on issues that are pertinent to current and future mines, as opposed to abandoned mines, which have been the focus of numerous previous short courses. The geochemical challenges of current and future mines share similarities with abandoned mines, but differences also exist. Mining and ore processing techniques have changed; the environmental footprint of waste materials has changed; environmental protection has become a more integral part of the mine planning process; and most historical mining was done with limited regard for the environment. The 17 papers in this special issue evolved from the Society of Economic Geologists’ short course. The relevant geochemical processes encompass the source, transport, and fate of contaminants related to the life cycle of a mine. Contaminants include metals and other inorganic species derived from geologic sources such as ore and solid mine waste, and substances brought to the site for ore processing, such as cyanide to leach gold. Factors, such as mine-waste mineralogy, hydrologic setting, mine-drainage chemistry, and microbial activity, that affect the hydrochemical risks from mining are reviewed by Nordstrom et al. In another paper, Nordstrom discusses baseline characterization at mine sites in a regulatory framework, and emphasizes the influence of mineral deposits in producing naturally elevated concentrations of many trace elements in surface water and groundwater. Surface water quality in mineralized watersheds is influenced by a number of processes that act on daily (diel) cycles and can produce dramatic variations in trace element concentrations as described by Gammons et al. Pre-mining baseline characterization studies should strive to capture the magnitude of these diel variations. Desbarats et al., using a case study of mine drainage from a gold mine, illustrate how elements that commonly occur as negatively charged species (anions) in solution, such as arsenic as arsenate, behave in an opposite fashion than most metals, which occur as positively charged species (cations). Significant improvement in the understanding of factors that influence the toxicity of metals to aquatic organisms in surface water has highlighted the importance of aqueous chemistry, particularly dissolved organic carbon, as described by Smith et al. Stream sediment contamination is another important pathway for affecting aquatic organisms, as reviewed by Besser et al. Understanding and predicting environmental consequences from mining begins with knowing the mineralogy and mineral reactivity of the ore, the wastes, and of secondary minerals formed later. Jamieson et al. review the importance of mineralogical studies in mine planning and remediation. A number of types of site-specific studies are needed to identify environmental risks related to individual mines. Lapakko reviews the general framework of mine waste characterization studies that are integral to the mine planning process. Hageman et al. present a comparative study of several static tests commonly used to characterize mine waste. The mining and ore processing practices employed at a specific mine site will vary on the basis of the commodities being targeted, the geology of the deposit, the geometry of the deposit, and the mining and ore processing methods used. Thus, these factors, in addition to the waste management practices used, can result in a variety of end-member mine waste features, each of which has its own set of challenges. Open pit mines and underground mines require waste rock to be removed to access ore. Waste rock presents unique problems because the rock is commonly mineralized at sub-economic grades and has not been processed to remove potentially problematic minerals, such as pyrite. Amos et al. examine the salient aspects of the geochemistry of waste rock. Mill tailings – the waste material after ore minerals have been removed – are a volumetrically important solid waste at many mine sites. Their fine grain size and the options for their management make their behavior in the environment distinct from that of waste rock. Lindsay et al. describe some of these differences through three case-study examples. Subaqueous disposal of tailings is another option described by Moncur et al. Cyanide leaching for gold extraction is a common method throughout the world. Johnson describes environmental aspects of cyanidation. Uranium mining presents unique environmental challenges, particularly since in-situ recovery has seen widespread use. Campbell et al. review the environmental geochemistry of uranium mining and current research on bioremediation. Ore concentrates from many types of metal mining undergo a pyrometallurgical technique known as smelting to extract the metal. Slag is the result of smelting, and it may be an environmental liability or a valuable byproduct, as described by Piatak et al. Finally, the open pits that result from surface mining commonly reach below the water table. At the end of mining, these pits may fill to form lakes that become part of the legacy of the mine. Castendyk et al., in two papers, review theoretical aspects of the environmental limnology of pit lakes. They also describe approaches that have been used to model pit lake water balance, wall-rock contributions to pit lake chemistry, pit lake water quality, and limnological processes, such as vertical mixing, through the use of three case studies.

Applied Geochemistry

System-scale airborne electromagnetic surveys in the lower Mississippi River Valley support multidisciplinary applications

The lower Mississippi River Valley spans over 200,000 square kilometres in parts of seven states, encompassing areas of critical groundwater supplies, natural hazards, infrastructure, and low-lying coastal regions. From 2018 - 2022, the U.S. Geological Survey acquired over 82,000 line-kilometres of airborne electromagnetic, radiometric, and magnetic data over this region to provide comprehensive and systematic information about subsurface geologic and hydrologic properties that support multiple scientific and societal interests. Most of the data were acquired on a regional grid of west-east flight lines separated by 3 - 6 kilometres; however, several high-resolution inset grids with line spacing as close as 200 m were acquired in targeted areas of interest. Approximately 8,000 line-kilometres were acquired along streams and rivers to characterise the potential for surface water-groundwater connection, and another 6,000 line-kilometres were acquired along the Mississippi and Arkansas River levees to characterise this critical infrastructure. Here, we present a summary of the data along with several examples of how they are being used to inform regional groundwater model development, inferences of groundwater salinity, identification of faults in the New Madrid seismic zone, and levee infrastructure.

lower Mississippi River Valley

Effects of hillslope gully stabilization on erosion and sediment production in the Torreon Wash watershed, New Mexico, 2009–12

Sediment erosion and deposition in two sets of paired (treated and untreated) upland drainages in the Torreon Wash watershed, upper Rio Puerco Basin, New Mexico, were examined over a 3 1/2-year period from spring 2009 through fall 2012. The objective was to evaluate the effectiveness of shallow, loose-stone check dams, or “one-rock dams,” as a hillslope gully erosion stabilization and mitigation method, and its potential for retaining upland eroded soils and decreasing delivery of sediment to lower ephemeral stream channels. Two high-resolution topographic surveys, completed at the beginning and end of the study period, were used to assess the effects of the mitigation measures at paired-drainage sites in both Penistaja Arroyo and Papers Wash watersheds, and at six main-stem-channel cross-section clusters along Penistaja Arroyo and Torreon Wash in the Torreon Wash watershed. For both drainage pairs, the treated drainage had greater sediment aggradation near the channel than the untreated drainage. Erosion was the dominant geomorphic process in the untreated Penistaja Arroyo drainage, whereas aggradation was the dominant process in the other three drainages. For the Penistaja Arroyo paired drainages, the treated site showed a 51-percent increase in area aggraded and 67-percent increase in volume aggraded per area analyzed over the untreated site. Both Papers Wash drainages showed net aggradation, but with similar treatment effect, with the treated site showing a 29-percent increase in area aggraded and 60-percent increase in volume aggraded per area analyzed over the untreated site. In the untreated Penistaja Arroyo drainage, the calculated minimum erosion rate was 0.0055 inches per year (in/yr; 0.14 millimeters per year [mm/yr]), whereas the calculated aggradation rates for the three drainages for which aggradation was the dominant geomorphic process were 0.0063 in/yr (0.16 mm/yr) for the Penistaja Arroyo treated drainage, 0.012 in/yr (0.31 mm/yr) for the Papers Wash untreated drainage, and 0.988 in/yr (2.51 mm/yr) for the Papers Wash treated drainage. Changes in the channel cross section along the main-stem Penistaja Arroyo and Torreon Wash were also examined. Channel-bank slumping and erosion of previously deposited bed material were apparent sources for sediment suspended in ephemeral streamflow. Cross-sectional channel surveys indicated examples of both erosion and deposition along each channel over the study period. Because the drainage area of the treated drainages is small compared to that of the Torreon Wash watershed, the upland mitigation measures would not be expected to measurably affect short-term concentrations of suspended sediment in main-stem channels. One-rock-dam mitigation structures in the upland drainages appear to have resulted in a decrease in sediment delivery to the main-stem channel. One-rock-dam mitigation structures may affect streamflow through their influence on runoff volume (via infiltration) and runoff rate (via detention), both of which may vary with time after structure installation.

New Mexico

A bibliography of references to avian cholera

Mrs. Wilson has made a genuine effort to include in this bibliography every significant reference to avian cholera since Louis Pasteur's articles appeared in 1880, although she recognizes the likelihood that a few have been overlooked. New listings have been added throughout 1978, but comprehensive coverage of the literature cannot be claimed beyond June of that year. Textbook accounts, because they are generally summaries of work published elsewhere, are excluded. Papers dealing primarily with the biology of Pasteurella multocida , as opposed to the disease it induces in birds, are also excluded, unless they report information of diagnostic usefulness. Short abstracts are not included unless the journals in which they are published are more widely available than those in which the complete articles appear or they are English summaries of foreign language articles. In compiling this bibliography, Mrs. Wilson has made extensive use of Biological Abstracts, the Pesticide Documentation Bulletin, and printouts generated by Bibliographic Retrieval Services, Inc. The "Literature Cited" sections of textbooks and journal articles pertinent to the subject were sources of many additional references. Regardless of the origin of the citation, its accuracy was confirmed by comparison with the original publication, except in those few instances (marked with an asterisk) when the journal was not on the shelves of the libraries accessible to us. The author will be grateful to users of the bibliography who point out errors or omissions. Wayne I. Jensen Microbiologist In Charge

Special Scientific Report - Wildlife

USGS research on energy resources, 1986; program and abstracts

The extended abstracts in this volume are summaries of the papers presented orally and as posters in the second V. E. McKelvey Forum on Mineral and Energy Resources, entitled "USGS Research on Energy Resources-1986." The Forum has been established to improve communication between the USGS and the earth science community by presenting the results of current USGS research on nonrenewable resources in a timely fashion and by providing an opportunity for individuals from other organizations to meet informally with USGS scientists and managers. It is our hope that the McKelvey Forum will help to make USGS programs more responsive to the needs of the earth science community, particularly the mining and petroleum industries, and Win foster closer cooperation between organizations and individuals. The Forum was named after former Director Vincent E. McKelvey in recognition of his lifelong contributions to research, development, and administration in mineral and energy resources, as a scientist, as Chief Geologist, and as Director of the U.S. Geological Survey. The Forum will be an annual event, and its subject matter will alternate between mineral and energy resources. We expect that the format will change somewhat from year to year as various approaches are tried, but its primary purpose will remain the same: to encourage direct communication between USGS scientists and the representatives of other earth-science related organizations. Energy programs of the USGS include oil and gas, coal, geothermal, uranium-thorium, and oil shale; work in these programs spans the national domain, including surveys of the offshore Exclusive Economic Zone. The topics selected for presentation at this McKelvey Forum represent an overview of the scientific breadth of USGS research on energy resources. They include aspects of petroleum occurrence in Eastern United States rift basins, the origin of magnetic anomalies over oil fields, accreted terranes and energy-resource implications, coal quality, geothermal energy sources, integrated geology and chemistry in uranium-deposit studies, and interpretations of sea-floor geology seen in reconnaissance-scale sidescan-sonar mosaics of the Gulf of Mexico and west coast Exclusive Economic Zone. Data are presented that are being used in building models of geothermal energy settings, basin histories, and the occurrence of energy resources. In addition to the technical sessions presenting the results of USGS research, each congressionally mandated USGS Mineral Resource Program has a display outlining plans and progress. We are all excited about this continuing opportunity to disseminate and discuss our research with our colleagues in industry and academia, and we welcome your suggestions on improving this series of Forums.

Circular

A working environment for digital planetary data processing and mapping using ISIS and GRASS GIS

Since the beginning of planetary exploration, mapping has been fundamental to summarize observations returned by scientific missions. Sensor-based mapping has been used to highlight specific features from the planetary surfaces by means of processing. Interpretative mapping makes use of instrumental observations to produce thematic maps that summarize observations of actual data into a specific theme. Geologic maps, for example, are thematic interpretative maps that focus on the representation of materials and processes and their relative timing. The advancements in technology of the last 30 years have allowed us to develop specialized systems where the mapping process can be made entirely in the digital domain. The spread of networked computers on a global scale allowed the rapid propagation of software and digital data such that every researcher can now access digital mapping facilities on his desktop. The efforts to maintain planetary missions data accessible to the scientific community have led to the creation of standardized digital archives that facilitate the access to different datasets by software capable of processing these data from the raw level to the map projected one. Geographic Information Systems (GIS) have been developed to optimize the storage, the analysis, and the retrieval of spatially referenced Earth based environmental geodata; since the last decade these computer programs have become popular among the planetary science community, and recent mission data start to be distributed in formats compatible with these systems. Among all the systems developed for the analysis of planetary and spatially referenced data, we have created a working environment combining two software suites that have similar characteristics in their modular design, their development history, their policy of distribution and their support system. The first, the Integrated Software for Imagers and Spectrometers (ISIS) developed by the United States Geological Survey, represents the state of the art for processing planetary remote sensing data, from the raw unprocessed state to the map projected product. The second, the Geographic Resources Analysis Support System (GRASS) is a Geographic Information System developed by an international team of developers, and one of the core projects promoted by the Open Source Geospatial Foundation (OSGeo). We have worked on enabling the combined use of these software systems throughout the set-up of a common user interface, the unification of the cartographic reference system nomenclature and the minimization of data conversion. Both software packages are distributed with free open source licenses, as well as the source code, scripts and configuration files hereafter presented. In this paper we describe our work done to merge these working environments into a common one, where the user benefits from functionalities of both systems without the need to switch or transfer data from one software suite to the other one. Thereafter we provide an example of its usage in the handling of planetary data and the crafting of a digital geologic map. ?? 2010 Elsevier Ltd. All rights reserved.

Conference Paper

USGS high resolution topo-mapping of Mars with Mars Orbiter Camera Narrow-Angle images

We describe our initial experiences producing controlled digital elevation models (DEMs) of Mars with horizontal resolutions of ≤10 m and vertical precisions of ≤2 m. Such models are of intense interest at all phases of Mars exploration and scientific investigation, from the selection of safe landing sites to the quantitative analysis of the morphologic record of surface processes. Topomapping with a resolution adequate to address many of these issues has only become possible with the success of the Mars Global Surveyor (MGS) mission. The Mars Orbiter Laser Altimeter (MOLA) on MGS mapped the planet globally with absolute accuracies <10 m vertically and ~100 m horizontally but relatively sparse sampling (300 m along track, with gaps of >1 km between tracks common at low latitudes). We rely on the MOLA data as the best available source of control and process images from the narrow-angle Mars Orbiter Camera (MOC-NA) with stereo and photoclinometric (shape-from-shading) techniques to produce DEMs with significantly better horizontal resolution. The techniques described here enable mapping not only with MOC but also with the high-resolution cameras (Mars Express HRSC, Mars Reconnaissance Orbiter HiRISE) that will orbit Mars in the next several years.

Conference Paper

The 2017-19 activity at Mount Agung in Bali (Indonesia): Intense unrest, monitoring, crisis response, evacuation, and eruption

After 53 years of quiescence, Mount Agung awoke in August 2017, with intense seismicity, measurable ground deformation, and thermal anomalies in the summit crater. Although the seismic unrest peaked in late September and early October, the volcano did not start erupting until 21 November. The most intense explosive eruptions with accompanying rapid lava effusion occurred between 25 and 29 November. Smaller infrequent explosions and extrusions continue through the present (June 2019). The delay between intense unrest and eruption caused considerable challenges to emergency responders, local and national governmental agencies, and the population of Bali near the volcano, including over 140,000 evacuees. This paper provides an overview of the volcanic activity at Mount Agung from the viewpoint of the volcano observatory and other scientists responding to the volcanic crisis. We discuss the volcanic activity as well as key data streams used to track it. We provide evidence that magma intruded into the mid-crust in early 2017, and again in August of that year, prior to intrusion of an inferred dike between Mount Agung and Batur Caldera that initiated an earthquake swarm in late September. We summarize efforts to forecast the behavior of the volcano, to quantify exclusion zones for evacuations, and to work with emergency responders and other government agencies to make decisions during a complex and tense volcanic crisis.

Scientific Reports

First stereoscopic radar images of Titan

Saturn's giant, cloud-covered satellite Titan, larger than the planet Mercury, is the last major piece of unexplored real estate in the Solar system. The NASA/ESA Cassini spacecraft carries a variety of instruments that are being used to map the surface of Titan, including optical instruments that provide a global synoptic view and spectroscopic information, and microwave imager (Cassini Titan RADAR) that can produce a 5000-km long 300- 1400 m resolution image that covers ~1% of Titan during a flyby encounter with the satellite. The first 7 such images, obtained between October 2004 and July 2006, covered nonoverlapping areas and revealed a diverse (and surprisingly Earth-like, despite the very cold temperature and different chemistry of the surface) set of geologic features, including volcanos, dune fields, channels, mountains, and impact craters. Beginning with the T18 encounter in September 2006, all but one of the dozen RADAR images obtained during the remainder of Cassini's prime mission will overlap with previous coverage. The repeat coverage has numerous cartographic and scientific applications, including serving as the basis for the most accurate geodetic control network of Titan, providing information about the surface materials as revealed by their angle-dependent microwave-scattering properties, allowing comparisons to look for temporal changes, and providing information about surface relief that can be exploited by radar-stereogrammetric mapping. We report the initial results of automated and manual stereo elevation measrurements at the USGS and JPL. These reveal local relief of several hundred to a thousand meters, associated with a canyon system and probable lakes in the northern hemisphere, a result that is consistent with the available topographic information about other parts of Titan from altimetry and radar shape-from-shading. Work is underway to develop more rigorous and efficient stereomapping tools at both institutions, based on those originally designed for the Magellan radar imagery of Venus, and to apply these to the extended stereo coverage that will become available over the next few years.

Conference Paper

Geology and natural history of the San Francisco Bay area: A field-trip guidebook

A National Association of Geoscience Teachers Far Western Section (NAGT-FWS) field conference is an ideal forum for learning about the geology and natural history of the San Francisco Bay area. We visit classic field sites, renew old friendships, and make new ones. This collection of papers includes field guides and road logs for all of the Bay-area trips held during the NAGT-FWS 2001 Fall Field Conference and supplemental chapters on other aspects of the area’s natural and human history. The trips touch on many aspects of the geology and natural hazards of the Bay area, especially urban problems associated with living on an active tectonic plate margin: earthquake faults, coastal erosion, landslides, and the utilization of land and natural resources. We hope this conference not only provides a two-day learning opportunity for conference participants but that students and educators will use this field guidebook for future teaching and research. Many thanks are due to the U.S. Geological Survey (USGS) and San José State University (SJSU) for cohosting the conference. We are grateful to each of the field trip leaders for preparing the trips and writing the accompanying guides. We especially appreciate the many hours put in by the guidebook reviewers, Robert I. Tilling (USGS) and Paula Messina (SJSU), and to the USGS Western Publications Group for editing, layout, and web posting. Additional guidebook contributions include articles by John Galloway, Scott Starratt, Page Mosier, and Susan Toussaint. During the conference guest speakers include Robert I. Tilling (USGS Volcano Hazards Team) and Ross Stein (USGS Earthquake Hazards Team). Workshops prepared for the conference include GIS in the classroom, using USGS data by John Vogel (USGS) and Paula Messina (SJSU), and The Best of BAESI (Bay Area Earth Science Institute), a teacher training organization under the direction of Ellen Metzger (SJSU) and Richard Sedlock (SJSU). The conference provides an opportunity to showcase USGS scientific and education resources with self-guided tours of the USGS Library, the Earth Science Information Center (ESIC), the Visitor Center, and various laboratories on the USGS campus and includes a half-day participatory tour of the USGS research vessel the R/V Polaris and the USGS Marine Facility at the Port of Redwood City under the direction of Cynthia L. Brown, Francis Parchaso, and Tara Schraga. Beyond the names mentioned above, a host of USGS and SJSU staff, SJSU students, and NAGT-FWS members contributed to the preparation and orchestration of the conference. We couldn’t have done it alone. Leslie C. Gordon (USGS), Philip W. Stoffer (USGS), and Deborah Harden (SJSU) NAGT-FWS 2001 Fall Field Conference Organizers.

California

Central Basin and Range Ecoregion: Chapter 20 in Status and trends of land change in the Western United States--1973 to 2000

This chapter has been modified from original material published in Soulard (2006), entitled “Land-cover trends of the Central Basin and Range Ecoregion” (U.S. Geological Survey Scientific Investigations Report 2006–5288). The Central Basin and Range Ecoregion (Omernik, 1987; U.S. Environmental Protection Agency, 1997) encompasses approximately 343,169 km² (132,498 mi2) of land bordered on the west by the Sierra Nevada Ecoregion, on the east by the Wasatch and Uinta Mountains Ecoregion, on the north by the Northern Basin and Range and the Snake River Basin Ecoregions, and on the south by the Mojave Basin and Range and the Colorado Plateaus Ecoregions (fig. 1). Most of the Central Basin and Range Ecoregion is located in Nevada (65.4 percent) and Utah (25.1 percent), but small segments are also located in Idaho (5.6 percent), California (3.7 percent), and Oregon (0.2 percent). Basin-and-range topography characterizes the Central Basin and Range Ecoregion: wide desert valleys are bordered by parallel mountain ranges generally oriented northsouth. There are more than 33 peaks within the Central Basin and Range Ecoregion that have summits higher than 3,000 m (10,000 ft), but valleys in the ecoregion are also high, most having elevations above 1,200 m (4,000 ft) (Grayson, 1993).

California;Idaho;Nevada;Oregon;Utah

Characterizing and simulating sediment loads and transport in the lower part of the San Antonio River Basin

This extended abstract is based on the U.S. Geological Survey Scientific Investigations Reports by Crow et al. (2013) and Banta and Ockerman (2014). Suspended sediment in rivers and streams can play an important role in ecological health of rivers and estuaries and consequently is an important issue for water-resource managers. The quantity and type of suspended sediment can affect the biological communities (Wood and Armitage, 1997), the concentration and movement of natural constituents and anthropogenic contaminants (Moran and others, 2012), and the amount of sediment deposition in coastal environments (Milliman and Meade, 1983). To better understand suspended-sediment characteristics in the San Antonio River Basin, the U.S. Geological Survey (USGS), in cooperation with the San Antonio River Authority and Texas Water Development Board, conducted a two-phase study to (1) collect and analyze sediment data to characterize sediment conditions in the San Antonio River downstream of San Antonio, Texas, and (2) develop and calibrate a watershed model to simulate hydrologic conditions and suspended-sediment loads for four watersheds in the San Antonio River Basin, downstream from San Antonio, Texas.

Texas

Conservation and Ecology of Marine Forage Fishes--Proceedings of a Research Symposium, September 2012

Locally and globally, there is growing recognition of the critical roles that herring, smelt, sand lance, eulachon, and other forage fishes play in marine ecosystems. Scientific and resource management entities throughout the Salish Sea, agree that extensive information gaps exist, both in basic biological knowledge and parameters critical to fishery management. Communication and collaboration among researchers also is inadequate. Building on the interest and enthusiasm generated by recent forage fish workshops and symposia around the region, the 2012 Research Symposium on the Conservation and Ecology of Marine Forage Fishes was designed to elucidate practical recommendations for science and policy needs and actions, and spur further collaboration in support for the precautionary management of forage fish. This dynamic and productive event was a joint venture of the Northwest Straits Commission Forage Fish Program, U.S. Geological Survey (USGS), Washington Department of Fish and Wildlife (WDFW), and The Puget Sound Partnership. The symposium was held on September 12–14, 2012, at the University of Washington, Friday Harbor Laboratories campus. Sixty scientists, graduate students, and fisheries policy experts convened; showcasing ongoing research, conservation, and management efforts targeting forage fish from regional and national perspectives. The primary objectives of this event were to: (1) review current research and management related to marine forage fish species; and (2) identify priority science and policy needs and actions for Washington, British Columbia, and the entire West Coast. Given the diversity of knowledge, interests, and disciplines surrounding forage fish on both sides of the international border, the organizing committee made a concerted effort to contact many additional experts who, although unable to attend, provided valuable insights and ideas to the symposium structure and discussions. The value of the symposium format was highlighted in the closing remarks delivered by Joseph Gaydos, SeaDoc Society and Chair of the Puget Sound Science Panel. Dr. Gaydos’ presentation referenced the 2011 paper by Murray Rudd in the journal Conservation Biology , “How research-prioritization exercises affect conservation policy.” The paper points out that policy makers and funding agencies are more likely to gain a full understanding of issues when they are presented with research findings from an aligned research program. That is, compared to unaligned research strategies, where work is not based on identified research priorities.

Open-File Report

Rock pushing and sampling under rocks on Mars

Viking Lander 2 acquired samples on Mars from beneath two rocks, where living organisms and organic molecules would be protected from ultraviolet radiation. Selection of rocks to be moved was based on scientific and engineering considerations, including rock size, rock shape, burial depth, and location in a sample field. Rock locations and topography were established using the computerized interactive video-stereophotogrammetric system and plotted on vertical profiles and in plan view. Sampler commands were developed and tested on Earth using a full-size lander and surface mock-up. The use of power by the sampler motor correlates with rock movements, which were by plowing, skidding, and rolling. Provenance of the samples was determined by measurements and interpretation of pictures and positions of the sampler arm. Analytical results demonstrate that the samples were, in fact, from beneath the rocks. Results from the Gas Chromatograph-Mass Spectrometer of the Molecular Analysis experiment and the Gas Exchange instrument of the Biology experiment indicate that more adsorbed(?) water occurs in samples under rocks than in samples exposed to the sun. This is consistent with terrestrial arid environments, where more moisture occurs in near-surface soil un- der rocks than in surrounding soil because the net heat flow is toward the soil beneath the rock and the rock cap inhibits evaporation. Inorganic analyses show that samples of soil from under the rocks have significantly less iron than soil exposed to the sun. The scientific significance of analyses of samples under the rocks is only partly evaluated, but some facts are clear. Detectable quantities of martian organic molecules were not found in the sample from under a rock by the Molecular Analysis experiment. The Biology experiments did not find definitive evidence for Earth-like living organisms in their sample. Significant amounts of adsorbed water may be present in the martian regolith. The response of the soil from under a rock to the aqueous nutrient in the Gas Exchange instrument indicates that adsorbed water and hydrates play an important role in the oxidation potential of the soil. The rock surfaces are strong, because they did not scratch, chip or spall when the sampler pushed them. Fresh surfaces of soil and the undersides of rocks were exposed so that they could be imaged in color. A ledge of soil adhered to one rock that tilted, showing that a crust forms near the surface of Mars. The reason for low amounts of iron in the sampIes from under the rocks is not known at this time.

Professional Paper

Lessons learned from the U.S. Geological Survey abandoned mine lands initiative: 1997-2002

Growth of the United States has been facilitated, in part, by hard-rock mining in the Rocky Mountains. Abandoned and inactive mines cause many significant environmental concerns in hundreds of watersheds. Those who have responsibility to address these environmental concerns must have a basic level of scientific information about mining and mine wastes in a watershed prior to initiating remediation activities. To demonstrate what information is needed and how to obtain that information, the U.S. Geological Survey implemented the Abandoned Mine Lands (AML) Initiative from 1997 to 2002 with demonstration studies in the Boulder River watershed in Montana and the Animas River watershed in Colorado. The AML Initiative included collection and analysis of geologic, hydrologic, geochemical, geophysical, and biological data. The synergy of this interdisciplinary analysis produced a perspective of the environmental concerns that could not have come from a single discipline. Two examples of these perspectives include (1) the combination of hydrological tracer techniques, structural geology, and geophysics help to understand the spatial distribution of loading to the streams in a way that cannot be evaluated by monitoring at a catchment outlet, and (2) the combination of toxicology and hydrology combine to illustrate that seasonal variability of toxicity conditions occurs. Lessons have been learned by listening to and collaborating with land-management agencies to understand their needs and by applying interdisciplinary methods to answer their questions.

Colorado, Montana