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At least 541 records · Page 30Linked to original sources
USGS2017

Life history migrations of adult Yellowstone Cutthroat Trout in the upper Yellowstone River

Knowledge of salmonid life history types at the watershed scale is increasingly recognized as a cornerstone for effective management. In this study, we used radiotelemetry to characterize the life history movements of Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri in the upper Yellowstone River, an extensive tributary that composes nearly half of the drainage area of Yellowstone Lake. In Yellowstone Lake, Yellowstone Cutthroat Trout have precipitously declined over the past 2 decades primarily due to predation from introduced Lake Trout Salvelinus namaycush . Radio tags were implanted in 152 Yellowstone Cutthroat Trout, and their movements monitored over 3 years. Ninety-six percent of tagged trout exhibited a lacustrine–adfluvial life history, migrating upstream a mean distance of 42.6 km to spawn, spending an average of 24 d in the Yellowstone River before returning to Yellowstone Lake. Once in the lake, complex postspawning movements were observed. Only 4% of radio-tagged trout exhibited a fluvial or fluvial–adfluvial life history. Low prevalence of fluvial and fluvial–adfluvial life histories was unexpected given the large size of the upper river drainage. Study results improve understanding of life history diversity in potamodromous salmonids inhabiting relatively undisturbed watersheds and provide a baseline for monitoring Yellowstone Cutthroat Trout response to management actions in Yellowstone Lake.

Upper Yellowstone River↗
USGS2016

Salmon and steelhead in the White Salmon River after the removal of Condit Dam–Planning efforts and recolonization results

Condit Dam, at river kilometer 5.3 on the White Salmon River, Washington, was breached in 2011 and completely removed in 2012. This action opened habitat to migratory fish for the first time in 100 years. The White Salmon Working Group was formed to create plans for fish salvage in preparation for fish recolonization and to prescribe the actions necessary to restore anadromous salmonid populations in the White Salmon River after Condit Dam removal. Studies conducted by work group members and others served to inform management decisions. Management options for individual species were considered, including natural recolonization, introduction of a neighboring stock, hatchery supplementation, and monitoring natural recolonization for some time period to assess the need for hatchery supplementation. Monitoring to date indicates that multiple species and stocks of anadromous salmonids are finding and spawning in the now accessible and recovering habitat.

Washington↗
USGS2013

Reduced Myxobolus cerebralis actinospore production in a Colorado reservior may be linked to changes in Tubifex tubifex population structure

Elucidating the dynamics of a parasitic infection requiring two hosts in a natural ecosystem can be a daunting task. Myxobolus cerebralis (Mc), the myxozoan parasite that causes whirling disease in some salmonids, was detected in the Colorado River upstream of Windy Gap Reservoir (WGR) in 1988. Subsequently, whirling disease was implicated in the decline of wild Rainbow Trout Oncorhynchus mykiss in the river when WGR was identified as a point source of Mc triactinomyxons (TAMs). Between 1997 and 2004, numerous investigations began to elucidate the etiology of Mc in WGR. During this period, Mc TAM production in WGR declined more than 90%. Explanations for the decline have included differences in stream discharge between years, changes in the thermal regime of the lake, severe drought, changes in the fish population structure in WGR, and reductions in the prevalence and severity of Mc infection in salmonids in the Colorado and Fraser rivers upstream of WGR. All of these have been discredited as explanations for the reduced TAM production. In 2005, a new study was conducted to replicate the studies completed in 1998. In this paper, the results of a new real-time polymerase chain reaction assay utilized to quantify the mitochondrial 16S rDNA specific to each of four lineages of Tubifex tubifex in pooled samples of 50 oligochaetes are presented. These results suggest that compared with 1998, the densities of aquatic oligochaetes and T. tubifex have increased, TAM production has been greatly reduced, and the decline is congruent with the dominance of lineages I, V, and VI of T. tubifex—three lineages that are refractory or highly resistant to Mc infection—in the oligochaete population. While it is possible that the resistant lineages function as biofilters that deactivate Mc myxospores, the reason for the decline in TAM production in WGR remains an enigma.

Colorado↗
USGS2020

Liquid chromatographic determination of chloramine-T and its primary degradation product, p-toluenesulfonamide, in water

N -sodium- N -chloro-ρ-toiuenesulfonamide (chloramine-T) effectively controls bacterial gill disease (BGD) in cultured fishes. BGD, a common disease of hatchery-reared salmonids, causes more fish losses than any other disease among these species. This study describes a liquid chromatographic (LC) method that is capable of direct, simultaneous analysis of chloramine-T and its primary degradation product, ρ-toluenesulfonamide (ρ-TSA), in water. The procedure involves reversed-phase (C 18 ) LC analysis with ion suppression, using 0.01 M phosphate buffer at pH 3. The mobile phase is phosphate buffer-acetonitrile (60 + 40) at 1 mL/min. Both chemicals can be detected with a UV spectrophotometer at 229 nm; the method is linear up to 40 mg chloramine-T or ρ-TSA/L. Mean recoveries were 96.4 ± 6.1% for water samples fortified with 0.03 mg chloramine-T/L and 95.3 ± 4.6% for water samples fortified with 0.005 mg ρ-TSA/L. Limits of detection without sample enrichment for chloramine-T and ρ-TSA are 0.01 mg/L and 0.001 mg/L, respectively.

Journal of AOAC International↗
USGS2003

Phylogeography of infectious haematopoietic necrosis virus in North America

Infectious hematopoietic necrosis virus (IHNV) is a rhabdoviral pathogen that infects wild and cultured salmonid fish throughout the Pacific Northwest of North America. IHNV causes severe epidemics in young fish and can cause disease or occur asymptomatically in adults. In a broad survey of 323 IHNV field isolates, sequence analysis of a 303 nucleotide variable region within the glycoprotein gene revealed a maximum nucleotide diversity of 8·6 %, indicating low genetic diversity overall for this virus. Phylogenetic analysis revealed three major virus genogroups, designated U, M and L, which varied in topography and geographical range. Intragenogroup genetic diversity measures indicated that the M genogroup had three- to fourfold more diversity than the other genogroups and suggested relatively rapid evolution of the M genogroup and stasis within the U genogroup. We speculate that factors influencing IHNV evolution may have included ocean migration ranges of their salmonid host populations and anthropogenic effects associated with fish culture.

Journal of General Virology↗
USGS2023

Stream hydrology and a pulse subsidy shape patterns of fish foraging

Pulsed subsidy events create ephemeral fluxes of hyper-abundant resources that can shape annual patterns of consumption and growth for recipient consumers. However, environmental conditions strongly affect local resource availability for much of the year, and can heavily impact consumer foraging and growth patterns prior to pulsed subsidy events. Thus, a consumer's capacity to exploit pulse subsidy resources may be influenced by antecedent environmental conditions, but this has rarely been shown in nature and is unknown in aquatic ecosystems. Here, we sought to understand the importance of hydrologic variation and a salmon pulse subsidy on the foraging and growth patterns of two stream salmonids in a coastal southeast Alaska drainage. To do this, we sampled fish stomach contents at a high temporal frequency (daily–weekly measurements) and analyzed fish consumption rates in relation to streamflow and pulse subsidy resource availability. We then explored the influence of interannual hydrologic variation on access to pulse subsidy resources (i.e. whether fish exceeded an egg consumption gape limit) in a bioenergetic simulation. Prior to Pink Salmon spawning, Dolly Varden and Coho Salmon displayed distinct and nonlinear flow-foraging relationships, where forage for both species consisted primarily of macroinvertebrates. During this time period, consumption maxima coincided with baseflow and the highest observed flow conditions, and consumption minima were observed at severe low-water and intermediate flow values. After salmon spawning began, forage was not significantly related to flow and consisted primarily of salmon eggs. Further, consumption rates increased overall, and foraging patterns did not appear to be affected by flow in either species. Bioenergetic simulations revealed that patterns of interannual hydrologic variation may shift Coho Salmon growth trajectories among years. Together, our results suggest that access to marine pulse subsidy resources may depend on whether antecedent hydrologic conditions are suitable for juvenile salmonids to grow large enough to consume salmon eggs by the onset of spawning.

Alaska↗
USGS2020

Evidence of energy and nutrient transfer from invasive pink salmon (Oncorhynchus gorbuscha) spawners to juvenile Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) in northern Norway

Recent large influxes of non-native Pacific pink salmon ( Oncorhynchus gorbuscha ) to North European rivers have raised concern over their potential negative impacts on native salmonids and recipient ecosystems. The eggs and carcasses of semelparous pink salmon may provide a significant nutrient and energy subsidy to native biota, but this phenomenon has not been widely documented outside the species' native distribution. We analysed the stomach contents and stable isotope values (δ 15 N and δ 13 C) in muscle and liver tissues of juvenile Atlantic salmon ( Salmo salar ) and brown trout ( Salmo trutta ) to determine whether these native salmonids utilise marine-derived nutrients and energy provided by pink salmon eggs and carcasses in the subarctic river system Vesterelva, northern Norway. Although egg foraging and assimilation of marine-derived nutrients in fish body tissues were found to be minor at the population level, a few juvenile salmon and trout had recently eaten large quantities of pink salmon eggs. Some of these individuals also had high δ 15 N and δ 13 C values, indicating a long-term diet subsidised by marine-derived nutrients and energy from pink salmon eggs. Hence, our study provides novel evidence that the eggs of invasive pink salmon may provide an energetic, profitable food resource for juvenile native fish. More research is needed to understand the broader ecological implications for fishes and other biota in river ecosystems invaded by pink salmon.

Troms and Finnmark County↗
USGS2023

Smallmouth bass (Micropterus dolomieu) suppress Atlantic salmon (Salmo salar) feeding activity and increase aggressive behaviours at warmer temperatures

By 2050, mean temperature in the state of Maine, located in the Northeastern USA, is expected to increase nearly 1°C, which could directly affect native coldwater salmonid behaviour and increase competition with warmwater smallmouth bass. We conducted a microcosm experiment to examine the feeding and agonistic behaviour of endangered juvenile Atlantic Salmon ( Salmo salar ) at two temperatures (18 and 21°C) in the presence and absence of non-native Smallmouth Bass ( Micropterus dolomieu ). By visually reviewing footage of fish competition in our tanks, we quantified feeding and agonistic interactions. We predicted salmon would exhibit lower feeding activity than bass at 21°C and antagonistic interactions between the two species would increase with warming. We found salmon feeding activity was reduced by smallmouth bass presence and this effect was stronger at 21°C. We also found smallmouth bass aggression was strongest at 21°C when salmon were present. Lastly, feeding activity and aggression in both species changed with food availability. These findings illustrate the potential for invasive warmwater species to outcompete native salmonids for resources, especially under the warmer conditions predicted by climate change scenarios.

Maine↗
USGS2023

Seasonal shifts in diel vertical migrations by lake-dwelling coastal cutthroat trout, Oncorhynchus clarkii clarkii, reflect thermal regimes and prey distributions

Lakes provide important habitat for salmonids that may use them as a primary feeding area between periods of reproduction. The seasonal changes in vertical thermal structure in lakes can affect the distribution of salmonids on seasonal and diel time scales as they search for, consume, and digest prey that also exploits the water column's distribution of food, temperature and light. Our goal was to analyse the vertical distribution of wild, native coastal cutthroat trout ( Oncorhynchus clarkii clarkii ) in Lake Washington on daily and seasonal time scales. This lake is stratified in the summer and isothermal in winter, allowing us to compare vertical movements between periods with and without thermal structure in water 50 m deep. We predicted that trout would be deeper in the water column during stratified months and shallower during isothermal months, and shallower at night than in the day. Overall, the trout showed these patterns in the depths and temperatures they occupied, tending to be within or below the thermocline in the summer but not in the coolest water available, and closer to the surface when the lake was isothermal. The trout were also closer to the surface at night and deeper during the day. The vertical range of these diel movements shifted with the seasons–deepest in October, as the thermocline deepened and weakened, and shallowest in January when the lake was isothermal. These seasonal and diel vertical distribution patterns by the trout optimise metabolism for growth, and facilitate feeding on planktivorous fishes that also show seasonal and diel vertical distribution changes.

Washington↗
USGS2019

Main stem and off-channel habitat use by juvenile Chinook salmon in a sub-Arctic riverscape

Poor growth and survival in freshwater and marine environments have been implicated as responsible for Chinook salmon ( Oncorhynchus tshawytscha ) declines across Alaska. Lateral connectivity of river main stems with off-channel habitats may play an integral role in sustaining Alaskan salmonid populations because off-channel habitats commonly provide greater growth opportunities than main stem habitats through greater macroinvertebrate productivity and warmer water temperatures. However, off-channel habitats may impose greater mortality risks to juvenile salmonids, as these habitats are typically more susceptible to drying and are often occupied by potential predators. We used a hierarchical Bayesian count model to describe juvenile Chinook salmon distributions throughout the Chena River, Alaska in main stem and off-channel habitats and employed diet, prey availability, and bioenergetic analyses to explain these habitat selection decisions from data collected in the summer of 2015. We found salmon to be most abundant in off-channel habitats as summer temperature increased, which suggested that salmon dispersed to off-channel habitats to take advantage of energetically favourable growth conditions as indicated by the higher prey biomass in benthic and diet samples collected within off-channel habitats. Our results could have significant implications for juvenile salmon under a warming Alaskan climate as access to productive off-channel habitats may be important to offset increased energetic costs as temperature warms.

Alaska↗
USGS2006

Vertical transmission of infectious haematopoietic necrosis virus in sockeye salmon, Oncorhynchus nerka (Walbaum): isolation of virus from dead eggs and fry

The control of epizootics of infectious haematopoietic necrosis (IIHN) virus in salmonid fishes is presently based on examination and certification of adult brood fish to prevent the introduction of virus-infected eggs into hatcheries (Canadian Fisherics and Marine Service 1976; McDaniel 1979). This strategy is based on the assumption that the virus is vertically transmitted in association with the gametes. However, evidence for vertical transmission of lHN virus is circumstantial, based mostly on the appearance of the disease outside the enzootic area (the west coast of North America) in fish hatched from eggs obtained from within that area (Plumb 1972; Holway & Smith 1973; Wolf, Quimby, Pettijohn & Landolt 1973, Sano, Nishimura, Okamoto, Yamazaki, Hanada & Watanabe 1977. Carlisle, Schat & Elston 1979). An indirect demonstration of vertical transmission was made by placing known virus-free fish in the water above and below raceways containing fish that suffered an IEEN epizootic in an cffort to climinate waterborne virus as a source of infection (Wingficid & Chan 1970). The fish placed below the raceway developed IHN, due to waterborne virus released from the affected fish in the raceway, but the fish placed above the raceway failed to develop IHN. These results suggested that the source of infection of the fish in the raceway was not the water supply, although it is possible that the virus was no longer present in the water supply at the time the sentinel fish were exposed to the water.

Journal of Fish Diseases↗
USGS1985

The representative research animal: Why rainbow trout (Salmo gairdneri Rich.)?

In laboratory research, the rainbow trout has become a counterpart to the white rat, because that fish is an adaptable species available in much of the developed world and stocks from egg through adult are available throughout the year. Moreover, many strains are recognized, and their propagation and laboratory maintenance are not particularly demanding. Also, knowledge of rainbow trout nutrition, husbandry, diseases, immune responses, toxicology, and carcinogenesis exceeds that of any other salmonid or coldwater teleost. The rainbow trout is the logical surrogate species in many studies of other salmonids.

Journal of Applied Ichthyology↗
USGS2012

Movement and feeding ecology of recently emerged steelhead in Lake Ontario tributaries

Steelhead ( Oncorhynchus mykiss ) ascend several Lake Ontario tributaries to spawn and juveniles are often the most abundant salmonid where spawning is successful. Movement and diet of recently emerged subyearling steelhead were examined in three New York tributaries of Lake Ontario. Downstream movement occurred mainly at night and consisted of significantly smaller fry that were feeding at lower levels than resident fry. Fry fed at the highest rate during the day and chironomids and baetids were the main components of their diet. The diet composition of steelhead fry was closely associated with the composition of the benthos in Trout Brook but more similar to the composition of the drift in the other streams. Daily ration was similar among streams, ranging from 10.2 to 14.3%. These findings are consistent with previous findings on the ecology of steelhead fry, as well as fry of other salmonid species

Journal of Applied Ichthyology↗
USGS2017

Diet, feeding patterns, and prey selection of subyearling Atlantic salmon (Salmo salar) and subyearling chinook salmon (Oncorhynchus tshawytscha) in a tributary of Lake Ontario

Since juvenile Atlantic salmon ( Salmo salar ) and Chinook salmon ( Oncorhynchus tshawytscha ) occupy a similar habitat in Lake Ontario tributaries, we sought to determine the degree of diet similarity between these species in order to assess the potential for interspecific competition. Atlantic salmon, an historically important but currently extirpated component of the Lake Ontario fish community, are the focus of a bi-national restoration effort. Presently this effort includes the release of hatchery produced juvenile Atlantic salmon in Lake Ontario tributaries. These same tributaries support substantial numbers of naturally reproduced juvenile Pacific salmonids including Chinook salmon. Subyearling Atlantic salmon and subyearling Chinook salmon had significantly different diets during each of the three time periods examined. Atlantic salmon fed slightly more from the benthos than from the drift and consumed mainly chirononmids (47.0%) and ephemeropterans (21.1%). The diet of subyearling Chinook salmon was more closely associated with the drift and consisted mainly of chironomids (60.2%) and terrestrial invertebrates (16.0%). Low diet similarity between subyearling Atlantic salmon and subyearling Chinook salmon likely minimizes competitive interactions for food between these species in Lake Ontario tributaries. However, the availability of small prey such as chironomids which comprise over 50% of the diet of each species, soon after emergence, could constitute a short term resource limitation. To our knowledge this is the first study of interspecific diet associations between these two important salmonid species.

Journal of Applied Ichthyology↗
USGS2017

Molecular testing of adult Pacific salmon and trout (Oncorhynchus spp.) for several RNA viruses demonstrates widespread distribution of piscine orthoreovirus in Alaska and Washington

This research was initiated in conjunction with a systematic, multiagency surveillance effort in the United States (U.S.) in response to reported findings of infectious salmon anaemia virus (ISAV) RNA in British Columbia, Canada. In the systematic surveillance study reported in a companion paper, tissues from various salmonids taken from Washington and Alaska were surveyed for ISAV RNA using the U.S.-approved diagnostic method, and samples were released for use in this present study only after testing negative. Here, we tested a subset of these samples for ISAV RNA with three additional published molecular assays, as well as for RNA from salmonid alphavirus (SAV), piscine myocarditis virus (PMCV) and piscine orthoreovirus (PRV). All samples ( n = 2,252; 121 stock cohorts) tested negative for RNA from ISAV, PMCV, and SAV. In contrast, there were 25 stock cohorts from Washington and Alaska that had one or more individuals test positive for PRV RNA; prevalence within stocks varied and ranged from 2% to 73%. The overall prevalence of PRV RNA-positive individuals across the study was 3.4% (77 of 2,252 fish tested). Findings of PRV RNA were most common in coho ( Oncorhynchus kisutch Walbaum) and Chinook ( O. tshawytscha Walbaum) salmon.

Alaska, Washington↗
USGS2002

A single Alal 39-to-Glu substitution in the Renibacterium salmoninarum virulence-associated protein p57 results in antigenic variation and is associated with enhanced p57 binding to Chinook salmon leukocytes

The gram-positive bacterium Renibacterium salmoninarum produces relatively large amounts of a 57-kDa protein (p57) implicated in the pathogenesis of salmonid bacterial kidney disease. Antigenic variation in p57 was identified by using monoclonal antibody 4C11, which exhibited severely decreased binding to R. salmoninarum strain 684 p57 and bound robustly to the p57 proteins of seven other R. salmoninarum strains. This difference in binding was not due to alterations in p57 synthesis, secretion, or bacterial cell association. The molecular basis of the 4C11 epitope loss was determined by amplifying and sequencing the two identical genes encoding p57, msa1 and msa2 . The 5′ and coding sequences of the 684 msa1 and msa2 genes were identical to those of the ATCC 33209 msa1 and msa2 genes except for a single C-to-A nucleotide mutation. This mutation was identified in both the msa1 and msa2 genes of strain 684 and resulted in an Ala 139 -to-Glu substitution in the amino-terminal region of p57. We examined whether this mutation in p57 altered salmonid leukocyte and rabbit erythrocyte binding activities. R. salmoninarum strain 684 extracellular protein exhibited a twofold increase in agglutinating activity for chinook salmon leukocytes and rabbit erythrocytes compared to the activity of the ATCC 33209 extracellular protein. A specific and quantitative p57 binding assay confirmed the increased binding activity of 684 p57. Monoclonal antibody 4C11 blocked the agglutinating activity of the ATCC 33209 extracellular protein but not the agglutinating activity of the 684 extracellular protein. These results indicate that the Ala 139 -to-Glu substitution altered immune recognition and was associated with enhanced biological activity of R. salmoninarum 684 p57.

Applied and Environmental Microbiology↗
USGS2016

Prey size and availability limits maximum size of rainbow trout in a large tailwater: insights from a drift-foraging bioenergetics model

The cold and clear water conditions present below many large dams create ideal conditions for the development of economically important salmonid fisheries. Many of these tailwater fisheries have experienced declines in the abundance and condition of large trout species, yet the causes of these declines remain uncertain. Here, we develop, assess, and apply a drift-foraging bioenergetics model to identify the factors limiting rainbow trout (Oncorhynchus mykiss) growth in a large tailwater. We explored the relative importance of temperature, prey quantity, and prey size by constructing scenarios where these variables, both singly and in combination, were altered. Predicted growth matched empirical mass-at-age estimates, particularly for younger ages, demonstrating that the model accurately describes how current temperature and prey conditions interact to determine rainbow trout growth. Modeling scenarios that artificially inflated prey size and abundance demonstrate that rainbow trout growth is limited by the scarcity of large prey items and overall prey availability. For example, shifting 10% of the prey biomass to the 13 mm (large) length class, without increasing overall prey biomass, increased lifetime maximum mass of rainbow trout by 88%. Additionally, warmer temperatures resulted in lower predicted growth at current and lower levels of prey availability; however, growth was similar across all temperatures at higher levels of prey availability. Climate change will likely alter flow and temperature regimes in large rivers with corresponding changes to invertebrate prey resources used by fish. Broader application of drift-foraging bioenergetics models to build a mechanistic understanding of how changes to habitat conditions and prey resources affect growth of salmonids will benefit management of tailwater fisheries.

Arizona↗
USGS2020

Remarkable response of native fishes to invasive trout suppression varies with trout density, temperature, and annual hydrology

Recovery of imperiled fishes can be achieved through suppression of invasives, but outcomes may vary with environmental conditions. We studied the response of imperiled desert fishes to an invasive brown ( Salmo trutta ) and rainbow trout ( Oncorhynchus mykiss ) suppression program in a Colorado River tributary, with natural flow and longitudinal variation in thermal characteristics. We investigated trends in fish populations related to suppression and tested hypotheses about the impacts of salmonid densities, hydrologic variation, and spatial–thermal gradients on the distribution and abundance of native fish species using zero-inflated generalized linear mixed effects models. Between 2012 and 2018, salmonids declined 89%, and native fishes increased dramatically (∼480%) once trout suppression surpassed ∼60%. Temperature and trout density were consistently retained in the top models predicting the abundance and distribution of native fishes. The greatest increases occurred in warmer reaches and in years with spring flooding. Surprisingly, given the evolution of native fishes in disturbance-prone systems, intense, monsoon-driven flooding limited native fish recruitment. Applied concertedly, invasive species suppression and efforts to mimic natural flow and thermal regimes may allow rapid and widespread native fish recovery.

Arizona↗