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At least 541 records · Page 30Linked to original sources
USGS2024

Ticks without borders: Microbiome of immature neotropical tick species parasitizing migratory songbirds along northern Gulf of Mexico

Introduction: The long-distance, seasonal migrations of birds make them an effective ecological bridge for the movement of ticks. The introduction of exotic tick species to new geographical regions can cause the emergence of novel tick-borne pathogens. This study examined the prevalence of exotic tick species parasitizing migratory songbirds at stopover sites along the northern Gulf of Mexico using the mitochondrial 12S rRNA gene. Methods: Overall, 421 individual ticks in the genera Amblyomma , Haemaphysalis , and Ixodes were recorded from 28 songbird species, of which Amblyomma and Amblyomma longirostre were the most abundant tick genera and species, respectively. A high throughput 16S ribosomal RNA sequencing approach characterized the microbial communities and identified pathogenic microbes in all tick samples. Results and discussion: Microbial profiles showed that Proteobacteria was the most abundant phylum. The most abundant pathogens were Rickettsia and endosymbiont Francisella , Candidatus Midichloria , and Spiroplasma . Permutation multivariate analysis of variance revealed that the relative abundance of Francisella and Rickettsia drives microbial patterns across the tick genera. We also noted a higher percentage of positive correlations in microbe-microbe interactions among members of the microbial communities. Network analysis suggested a negative correlation between a) Francisella and Rickettsia and, b) Francisella and Cutibacterium . Lastly, mapping the distributions of bird species parasitized during spring migrations highlighted geographic hotspots where migratory songbirds could disperse ticks and their pathogens at stopover sites or upon arrival to their breeding grounds, the latter showing mean dispersal distances from 421–5003 kilometers. These findings spotlight the potential role of migratory birds in the epidemiology of tick-borne pathogens.

Alabama, Louisiana↗
USGS2021

Range-wide declines of northern spotted owl populations in the Pacific Northwest: A meta-analysis

The northern spotted owl ( Strix occidentalis caurina ) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls ( Strix varia ), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls' geographic range to analyze demographic traits, rates of population change, and occupancy parameters for spotted owl territories. We found that northern spotted owl populations experienced significant declines of 6–9% annually on 6 study areas and 2–5% annually on 5 other study areas. Annual declines translated to ≤35% of the populations remaining on 7 study areas since 1995. Barred owl presence on spotted owl territories was the primary factor negatively affecting apparent survival, recruitment, and ultimately, rates of population change. Analysis of spotted and barred owl detections in an occupancy framework corroborated the capture-recapture analyses with barred owl presence increasing territorial extinction and decreasing territorial colonization of spotted owls. While landscape habitat components reduced the effect of barred owls on these rates of decline, they did not reverse the negative trend. Our analyses indicated that northern spotted owl populations potentially face extirpation if the negative effects of barred owls are not ameliorated while maintaining northern spotted owl habitat across their range.

California, Oregon, Washington↗
USGS2013

A GIS and statistical approach to identify variables that control water quality in hydrothermally altered and mineralized watersheds, Silverton, Colorado, USA

Hydrothermally altered bedrock in the Silverton mining area, southwest Colorado, USA, contains sulfide minerals that weather to produce acidic and metal-rich leachate that is toxic to aquatic life. This study utilized a geographic information system (GIS) and statistical approach to identify watershed-scale geologic variables in the Silverton area that influence water quality. GIS analysis of mineral maps produced using remote sensing datasets including Landsat Thematic Mapper, advanced spaceborne thermal emission and reflection radiometer, and a hybrid airborne visible infrared imaging spectrometer and field-based product enabled areas of alteration to be quantified. Correlations between water quality signatures determined at watershed outlets, and alteration types intersecting both total watershed areas and GIS-buffered areas along streams were tested using linear regression analysis. Despite remote sensing datasets having varying watershed area coverage due to vegetation cover and differing mineral mapping capabilities, each dataset was useful for delineating acid-generating bedrock. Areas of quartz–sericite–pyrite mapped by AVIRIS have the highest correlations with acidic surface water and elevated iron and aluminum concentrations. Alkalinity was only correlated with area of acid neutralizing, propylitically altered bedrock containing calcite and chlorite mapped by AVIRIS. Total watershed area of acid-generating bedrock is more significantly correlated with acidic and metal-rich surface water when compared with acid-generating bedrock intersected by GIS-buffered areas along streams. This methodology could be useful in assessing the possible effects that alteration type area has in either generating or neutralizing acidity in unmined watersheds and in areas where new mining is planned.

Colorado↗
USGS2005

The World Coal Quality Inventory: A status report

National and international policy makers and industry require accurate information on coal, including coal quality data, to make informed decisions regarding international import needs and export opportunities, foreign policy, technology transfer policies, foreign investment prospects, environmental and health assessments, and byproduct use and disposal issues. Unfortunately, the information needed is generally proprietary and does not exist in the public domain. The U.S. Geological Survey (USGS), in conjunction with partners in about 60 countries, is developing a digital compilation of worldwide coal quality. The World Coal Quality Inventory (WoCQI) will contain coal quality information for samples obtained from major coal beds in countries having significant coal production, as well as from many countries producing smaller volumes of coal, with an emphasis on coals currently being burned. The information that will be incorporated includes, but is not limited to, proximate and ultimate analyses; sulfur-form data; major, minor, and trace element analysis; and semi-quantitative analyses of minerals, modes of occurrence, and petrography. The coal quality information will eventually be linked to a Geographic Information System (GIS) that shows the coal basins and sample locations along with geologic, land use, transportation, industrial, and cultural information. The WoCQI will be accessible on the USGS web page and new data added periodically. This multi-national collaboration is developing global coal quality data that contain a broad array of technologic, economic, and environmental parameters, which should help to ensure the efficient and environmentally compatible use of global coal resources in the 21st century.

International Journal of Coal Geology↗
USGS2011

A novel member of the family Hepeviridae from cutthroat trout ( Oncorhynchus clarkii )

Beginning in 1988, the Chinook salmon embryo (CHSE-214) cell line was used to isolate a novel virus from spawning adult trout in the state of California, USA. Termed the cutthroat trout ( Oncorhynchus clarkii ) virus (CTV), the small, round virus was not associated with disease, but was subsequently found to be present in an increasing number of trout populations in the western USA, likely by a combination of improved surveillance activities and the shipment of infected eggs to new locations. Here, we report that the full length genome of the 1988 Heenan Lake isolate of CTV consisted of 7269 nucleotides of positive-sense, single-stranded RNA beginning with a 5' untranslated region (UTR), followed by three open reading frames (ORFs), a 3' UTR and ending in a polyA tail. The genome of CTV was similar in size and organization to that of Hepatitis E virus (HEV) with which it shared the highest nucleotide and amino acid sequence identities. Similar to the genomes of human, rodent or avian hepeviruses, ORF 1 encoded a large, non-structural polyprotein that included conserved methyltransferase, protease, helicase and polymerase domains, while ORF 2 encoded the structural capsid protein and ORF 3 the phosphoprotein. Together, our data indicated that CTV was clearly a member of the family Hepeviridae , although the level of amino acid sequence identity with the ORFs of mammalian or avian hepeviruses (13-27%) may be sufficiently low to warrant the creation of a novel genus. We also performed a phylogenetic analysis using a 262. nt region within ORF 1 for 63 isolates of CTV obtained from seven species of trout reared in various geographic locations in the western USA. While the sequences fell into two genetic clades, the overall nucleotide diversity was low (less than 8.4%) and many isolates differed by only 1-2 nucleotides, suggesting an epidemiological link. Finally, we showed that CTV was able to form persistently infected cultures of the CHSE-214 cell line that may have use in research on the biology or treatment of hepevirus infections of humans or other animals.

Virus Research↗
USGS1999

Regional variability of slope stability: Application to the Eel margin, California

Relative values of downslope driving forces and sediment resisting forces determine the locations of submarine slope failures. Both of these vary regionally, and their impact can be addressed when the data are organized in a Geographic Information System (GIS). The study area on the continental margin near the Eel River provides an excellent opportunity to apply GIS spatial analysis techniques for evaluation of slope stability. In this area, swath bathymetric mapping shows seafloor morphology and distribution of slope steepness in fine detail, and sediment analysis of over 70 box cores delineates the variability of sediment density near the seafloor surface. Based on the results of ten geotechnical studies of submarine study areas, we developed an algorithm that relates surface sediment density to the shear strength appropriate to the type of cyclic loading produced by an earthquake. Strength and stress normalization procedures provide results that are conceptually independent of subbottom depth. Results at depth are rigorously applicable if sediment lithology does not vary significantly and consolidation state can be estimated. Otherwise, the method applies only to shallow-seated slope failure. Regional density, slope, and level of anticipated seismic shaking information were combined in a GIS framework to yield a map that illustrates the relative stability of slopes in the face of seismically induced failure. When a measure of predicted relative slope stability is draped on an oblique view of swath bathymetry, a variation in this slope stability is observed on an otherwise smooth slope along the mid-slope region north of a plunging anticline. The section of slope containing diffuse, pockmarked gullies has a lower measure of stability than a separate section containing gullies that have sharper boundaries and somewhat steeper sides. Such an association suggests that our slope-stability analysis relates to the stability of the gully sides. The remainder of the study area shows few obvious indications of slope instability except for a feature that has become known as the 'Humboldt Slide,' but it is too deep-seated to be amenable to the slope-stability-prediction techniques presented herein. In general, few slope failures have been mapped in the Eel margin study area despite the high level of seismicity, the relatively high rates of sediment accumulation, and the extent of gas charging observed by others.

Marine Geology↗
USGS2016

Mississippian coral latitudinal diversity gradients (western interior United States): Testing the limits of high resolution diversity data

Analysis of high resolution diversity data for Mississippian corals in the western interior United States yielded mild latitudinal diversity gradients despite the small geographic area covered by samples and a large influence on diversity patterns by geographic sampling intensity (sample bias). Three competing plate tectonic reconstructions were tested using the diversity patterns. Although none could be forcefully rejected, one reconstruction proved less consistent with diversity patterns than the other two and additional coral diversity data from farther north in Canada would better discriminate the two equivalent reconstructions. Despite the relatively high sampling intensity represented by the analyzed database, diversity patterns were greatly affected by sample abundance and distribution. Hence, some effort at recognizing and accounting for sample bias should be undertaken in any study of latitudinal diversity gradients. Small-scale geographic lumping of sample localities had only small effects on geographic diversity patterns. However, large-scale (e.g., regional) geographic lumping of diversity data may not yield latitudinally sensitive diversity patterns. Temporal changes in coral diversity in this region reflect changes in eustacy, local tectonism, and terrigenous sediment flux, far more than they do shifting latitude. Highest regional diversity occurred during the interval when the studied region occupied the highest latitude. Therefore, diversity data from different regions may not be comparable, in terms of latitudinal inference. Small-scale stratigraphic lumping of the data caused a nearly complete loss of the latitudinal diversity patterns apparent prior to lumping. Hence, the narrowest possible stratigraphic resolution should be maintained in analyzing latitudinal diversity gradients.

Journal of Paleontology↗
USGS1992

A statistical overview of mass movement characteristics on the North American Atlantic outer continental margin

An analysis of 179 mass movements on the North American Atlantic continental slope and upper rise shows that slope failures have occurred throughout the geographic extent of the outer margin. Although the slope failures show no striking affinity for a particular depth as an origination level, there is a broad, primary mode centered at about 900 m. The resulting slides terminate at almost all depths and have a primary mode at 1100 m, but the slope/rise boundary (at 2200 m) also is an important mode. Slope failures have occurred at declivities ranging from 1° to 30° (typically, 4°); the resultant mass movement deposits vary in width from 0.2 to 50 km (typically, 1–2 km) and in length from 0.3 to 380 km (typically, 2–4 km), and they have been reported to be as thick as 650 m. On a numeric basis, mass movements are slightly more prevalent on open slopes than in other physiographic settings, and both translational and rotational failure surfaces are common. The typical mass movement is disintegrative in nature. Open slope slides tend to occur at lower slope angles and are larger than canyon slides. Further, large‐scale slides rather than small‐scale slides tend to originate on gentle slopes (≍ 3–4°). Rotational slope failures appear to have a slightly greater chance of occurring in canyons, but there is no analogous bias associated with translational failures. Similarly, disintegrative slides seem more likely to be associated with rotational slope failures than translational ones and are longer than their nondisintegrative counterparts. The occurrence of such a variety of mass movements at low declivities implies that a regional failure mechanism has prevailed. We suggest that earthquakes or, perhaps in some areas, gas hydrates are the most likely cause of the slope failures.

Marine Geotechnology↗
USGS2021

Precipitation-runoff processes in the Merced River Basin, Central California, with prospects for streamflow predictability, water years 1952–2013

The U.S. Geological Survey, in cooperation with the California Department of Water Resources (DWR), has constructed a new spatially detailed Precipitation-Runoff Modeling System (PRMS) model for the Merced River Basin, California, which is a tributary of the San Joaquin River in California. Operated through an Object User Interface (OUI) with Ensemble Streamflow Prediction (ESP) and daily climate distribution preprocessing functionality, the model is calibrated primarily to simulate (and eventually, forecast) year-to-year variations of inflows to Lake McClure during the critical April–July snowmelt season. The model is intended to become part of a suite of methods used by DWR for estimating daily streamflow from the Merced River Basin, especially during the snowmelt season. This study describes the results of the application of an analysis tool that simulates responses to climate and land-use variations at a higher spatial resolution than previously available to DWR. A geographic information system was used to delineate the model domain, that is, areas draining to a single outlet at U.S. Geological Survey streamflow-gaging station 11270900, Merced River below Merced Falls Dam, near Snell, CA (also known as California Data Exchange Center station MRC), and subdrainage areas, including four draining to internal gages used as calibration targets. Using this delineation, three contiguous subbasins were recognized and, along with the model domain and nested calibration targets, are the simulation units evaluated in this report. An auto-calibration tool, LUCA (Let Us CAlibrate), was used for each calibration node, from headwaters to basin outlet, and then parameters were manually adjusted to complete the calibration. The main objective was to match April–July snowmelt seasonal discharge values of simulated streamflow to observed (measured or reconstructed) discharge values. Calibration or validation periods used site-specific streamflows—mostly from October 1, 1988, through September 30, 2013—but differed according to the period-of-record available for the measurements collected at internal gages or reconstructed flows for the single outlet. The accuracy of the Merced PRMS streamflow simulations varied seasonally, as compared to observed values. Based on statistical results, the Merced PRMS model satisfactorily simulated snowmelt seasonal streamflows. April–July calibrations for all areas had small negative bias (not greater than 7 percent) and low relative error (less than 8 percent). Less satisfactory performance for other seasons was attributed to several factors: (1) high uncertainty in low or zero flows in summer and fall, (2) lack of accounting for basin withdrawals and anthropogenic water use, (3) unavailability and (or) inaccuracy of observed (measured) meteorological input data, and (4) uncertainty in reconstructed streamflow data. With some additional refinement, the Merced PRMS model may be used for forecasting seasonal and longer-term streamflow variations; evaluating forecasted and past climate and land cover changes; providing water-resource managers with a consistent and documented method for estimating streamflow at ungaged sites within the basin; and aiding environmental studies, hydraulic design, water management, and water-quality projects in the Merced River Basin.

California↗
USGS1990

Geographic information system as country-level development and monitoring tool, Senegal example

Geographic information systems (GIS) allow an investigator the capability to merge and analyze numerous types of country-level resource data. Hypothetical resource analysis applications in Senegal were conducted to illustrate the utility of a GIS for development planning and resource monitoring. Map and attribute data for soils, vegetation, population, infrastructure, and administrative units were merged to form a database within a GIS. Several models were implemented using a GIS to: analyze development potential for sustainable dryland agriculture; prioritize where agricultural development should occur based upon a regional food budget; and monitor dynamic events with remote sensing. The steps for implementing a GIS analysis are described and illustrated, and the use of a GIS for conducting an economic analysis is outlined. Using a GIS for analysis and display of results opens new methods of communication between resource scientists and decision makers. Analyses yielding country-wide map output and detailed statistical data for each level of administration provide the advantage of a single system that can serve a variety of users.

Conference Paper↗
USGS2005

The New Hampshire watershed tool: a geographic information system tool to estimate streamflow statistics and ground-water-recharge rates

Estimates of low-flow statistics, flow durations, and ground-water-recharge rates are needed to assist water-resource managers in assessing surface-water resources and ground-water availability. Often these estimates are required at ungaged sites where no observed streamflow data are available for analysis. Regression equations for estimating low-flow statistics and flow durations, and for estimating ground-water-recharge rates at ungaged sites have been developed for New Hampshire. However, use of these equations requires numerous input parameters, such as basin and climatic characteristics. This report describes a customized geographic information system (GIS) application, the New Hampshire Watershed Tool, that automates the measurement of the characteristics used for input to the regression equations and calculates the corresponding flow statistics and ground-water-recharge rates.

Open-File Report↗
USGS2018

Leveraging geodetic data to reduce losses from earthquakes

Seismic hazard assessments that are based on a variety of data and the best available science, coupled with rapid synthesis of real-time information from continuous monitoring networks to guide post-earthquake response, form a solid foundation for effective earthquake loss reduction. With this in mind, the Earthquake Hazards Program (EHP) of the U.S. Geological Survey (USGS) Natural Hazards Mission Area (NHMA) engages in a variety of undertakings, both established and emergent, in order to provide high quality products that enable stakeholders to take action in advance of and in response to earthquakes. Examples include the National Seismic Hazard Model (NSHM), development of tools for improved situational awareness such as earthquake early warning (EEW) and operational earthquake forecasting (OEF), research about induced seismicity, and new efforts to advance comprehensive subduction zone science and monitoring. Geodetic observations provide unique and complementary information directly relevant to advancing many aspects of these efforts (fig. 1). EHP scientists have long leveraged geodetic data for a range of influential studies, and they continue to develop innovative observation and analysis methods that push the boundaries of the field of geodesy as applied to natural hazards research. Given the ongoing, rapid improvement in availability, variety, and precision of geodetic measurements, considering ways to fully utilize this observational resource for earthquake loss reduction is timely and essential. This report presents strategies, and the underlying scientific rationale, by which the EHP could achieve the following outcomes: The EHP is an authoritative source for the interpretation of geodetic data and its use for earthquake loss reduction throughout the United States and its territories. The USGS consistently provides timely, high quality geodetic data to stakeholders. Significant earthquakes are better characterized by incorporating geodetic data into USGS event response products and by expanded use of geodetic imaging data to assess fault rupture and source parameters. Uncertainties in the NSHM, and in regional earthquake models, are reduced by fully incorporating geodetic data into earthquake probability calculations. Geodetic networks and data are integrated into the operations and earthquake information products of the Advanced National Seismic System (ANSS). Earthquake early warnings are improved by more rapidly assessing ground displacement and the dynamic faulting process for the largest earthquakes using real-time geodetic data. Methodology for probabilistic earthquake forecasting is refined by including geodetic data when calculating evolving moment release during aftershock sequences and by better understanding the implications of transient deformation for earthquake likelihood. A geodesy program that encompasses a balanced mix of activities to sustain missioncritical capabilities, grows new competencies through the continuum of fundamental to applied research, and ensures sufficient resources for these endeavors provides a foundation by which the EHP can be a leader in the application of geodesy to earthquake science. With this in mind the following objectives provide a framework to guide EHP efforts: Fully utilize geodetic information to improve key products, such as the NSHM and EEW, and to address new ventures like the USGS Subduction Zone Science Plan. Expand the variety, accuracy, and timeliness of post-earthquake information products, such as PAGER (Prompt Assessment of Global Earthquakes for Response), through incorporation of geodetic observations. Determine if geodetic measurements of transient deformation can significantly improve estimates of earthquake probability. Maintain an observational strategy aligned with the target outcomes of this document that includes continuous monitoring, recording of ephemeral observations, focused data collection for use in research, and application-driven data processing and analysis systems. Collaborate on research, development, and operation of affordable, high-precision seafloor geodetic methods that improve earthquake forecasting and event response. Advance computational techniques and instrumentation to enable use of strategies like repeat-pass imagery and low-cost geodetic sensors for earthquake response, monitoring, and research. Engage stakeholders and collaborate with partner institutions to foster operational and research objectives and to safeguard the continued health of geodetic infrastructure upon which we mutually depend. Maintaining a vibrant internal research program provides the foundation by which the EHP can remain an effective and trusted source for earthquake science. Exploiting abundant new data sources, evaluating and assimilating the latest science, and pursuing novel avenues of investigation are means to fulfilling the EHP’s core responsibilities and realizing the important scientific advances envisioned by its scientists. Central to the success of such a research program is engaging personnel with a breadth of competencies and a willingness and ability to adapt these to the program’s evolving priorities, enabling current staff to expand their skills and responsibilities, and planning holistically to meet shared workforce needs. In parallel, collaboration with external partners to support scientific investigations that complement ongoing internal research enables the EHP to strengthen earthquake information products by incorporating alternative perspectives and approaches and to study topics and geographic regions that cannot be adequately covered internally. With commensurate support from technical staff who possess diverse skills, including engineering, information technology, and proficiency in quantitative analysis combined with basic geophysical knowledge, the EHP can achieve the geodetic outcomes identified in this document.

Open-File Report↗
USGS2010

Applications of factor analysis in study of chemistry of groundwater quality, Mojave River Valley, California

Factor analysis is applied to results of chemical analyses of 103 water samples from wells in the Upper and Middle Mojave River valley, San Bernardino County, California. Chemical analyses showed that there are three principal chemical types of water, calcium bicarbonate, sodium sulfate, and sodium chloride, as well as many mixtures of the three. Data were studied by factor analysis to learn the relative importance of each principal ion in determining the variations among the samples, and to examine the possibility of chemical equilibrium between aqueous and solid phases in the aquifers. Most of the covariance in the system may be accounted for by variances of Ca +2 , Mg +2 , Na +1 , SO 4 −2 , and Cl −1 . There is almost identical loading on the constituents Na +1 and Cl −1 . The variance in chemical composition of the hydrochemical system is governed largely by sources of sodium chloride. None of the components is controlled by equilibrium between ions in the water and minerals in the aquifers. Concentrations of NO 3 −1 and F −1 vary independently of other constituents. Geographic distribution of statistical loadings of the principal constituents at individual wells does not reveal sources of the constituents, which must be deduced from geologic and hydrologic evidence. Factor analysis, however, furnished the critical information on chemical relationships basic to the deduction.

California↗
USGS2016

Methods for estimating peak-flow frequencies at ungaged sites in Montana based on data through water year 2011: Chapter F in Montana StreamStats

The U.S. Geological Survey (USGS), in cooperation with the Montana Department of Natural Resources and Conservation, completed a study to update methods for estimating peak-flow frequencies at ungaged sites in Montana based on peak-flow data at streamflow-gaging stations through water year 2011. The methods allow estimation of peak-flow frequencies (that is, peak-flow magnitudes, in cubic feet per second, associated with annual exceedance probabilities of 66.7, 50, 42.9, 20, 10, 4, 2, 1, 0.5, and 0.2 percent) at ungaged sites. The annual exceedance probabilities correspond to 1.5-, 2-, 2.33-, 5-, 10-, 25-, 50-, 100-, 200-, and 500-year recurrence intervals, respectively. Regional regression analysis is a primary focus of Chapter F of this Scientific Investigations Report, and regression equations for estimating peak-flow frequencies at ungaged sites in eight hydrologic regions in Montana are presented. The regression equations are based on analysis of peak-flow frequencies and basin characteristics at 537 streamflow-gaging stations in or near Montana and were developed using generalized least squares regression or weighted least squares regression. All of the data used in calculating basin characteristics that were included as explanatory variables in the regression equations were developed for and are available through the USGS StreamStats application (http://water.usgs.gov/osw/streamstats/) for Montana. StreamStats is a Web-based geographic information system application that was created by the USGS to provide users with access to an assortment of analytical tools that are useful for water-resource planning and management. The primary purpose of the Montana StreamStats application is to provide estimates of basin characteristics and streamflow characteristics for user-selected ungaged sites on Montana streams. The regional regression equations presented in this report chapter can be conveniently solved using the Montana StreamStats application. Selected results from this study were compared with results of previous studies. For most hydrologic regions, the regression equations reported for this study had lower mean standard errors of prediction (in percent) than the previously reported regression equations for Montana. The equations presented for this study are considered to be an improvement on the previously reported equations primarily because this study (1) included 13 more years of peak-flow data; (2) included 35 more streamflow-gaging stations than previous studies; (3) used a detailed geographic information system (GIS)-based definition of the regulation status of streamflow-gaging stations, which allowed better determination of the unregulated peak-flow records that are appropriate for use in the regional regression analysis; (4) included advancements in GIS and remote-sensing technologies, which allowed more convenient calculation of basin characteristics and investigation of many more candidate basin characteristics; and (5) included advancements in computational and analytical methods, which allowed more thorough and consistent data analysis. This report chapter also presents other methods for estimating peak-flow frequencies at ungaged sites. Two methods for estimating peak-flow frequencies at ungaged sites located on the same streams as streamflow-gaging stations are described. Additionally, envelope curves relating maximum recorded annual peak flows to contributing drainage area for each of the eight hydrologic regions in Montana are presented and compared to a national envelope curve. In addition to providing general information on characteristics of large peak flows, the regional envelope curves can be used to assess the reasonableness of peak-flow frequency estimates determined using the regression equations.

Montana↗
USGS2021

The spatial-temporal relationship of blue-winged teal to domestic poultry: Movement state modeling of a highly mobile avian influenza host

1. Migratory waterfowl facilitate long distance dispersal of zoonotic pathogens and are increasingly recognized as contributing to the geographic spread of avian influenza viruses (AIV). AIV are globally distributed and have the potential to produce highly contagious poultry disease, economically impact both large-scale and backyard poultry producers, and raise the specter of epidemics and pandemics in human populations. 2. Because migratory waterfowl behavior varies across multiple spatial and temporal scales, the timing and distribution of wild bird AIV introductions to poultry are also heterogeneous in time and space. To help reduce economic impacts to the poultry industry and enable poultry producers to better anticipate when and where poultry outbreaks may occur, it is critically important to consider the movement ecology of the waterfowl species transporting and transmitting AIV. 3. We used telemetry for a geographically widespread and common AIV host, blue-winged teal ( Spatula discors ; BWTE), to model reservoir host movement states with respect to backyard and commercial poultry facilities in the United States. Our modeling framework enabled us to estimate wild bird proximity to poultry facilities while concurrently assessing the influence of poultry facilities on BWTE movement state transition. Our primary objective was to estimate the likelihood of duck and poultry overlap by estimating when and where BWTE were geographically closest to poultry. 4. Synthesis and applications . Migratory waterfowl facilitate dispersal of the avian influenza viruses that cause highly contagious poultry disease. Movement analysis of blue-winged teal indicates that spatio-temporal overlap between wild birds and poultry facilities varies by season, the poultry type produced (e.g., turkey, chicken), and if the facility is a commercial or backyard operation. These findings are broadly applicable to disease ecology research and can be applied by poultry producers to improve bio-security, enhance poultry management, and prioritize disease surveillance efforts.

Journal of Applied Ecology↗
USGS2022

What common-garden experiments tell us about climate responses in plants

Common garden experiments are indoor or outdoor plantings of species or populations collected from multiple distinct geographic locations, grown together under shared conditions. These experiments examine a range of questions for theory and application using a variety of methods for analysis. The eight papers of this special feature comprise a cross section of contemporary approaches, summarized and synthesized here by what they tell us about the relationships between climate-related trait spectra and fitness optima. Four of the eight papers are based on field experiments in prairie, desert, Mediterranean and boreal biomes. Representative of many common garden experiments, these experiments reveal consistent evidence of traits varying with population climate provenance, but evidence of a tradeoff between growth and tolerance traits or of consistent fitness optimization at home is scant, in contrast to trait theory. Two synthesis papers highlight dominant patterns of trait divergence, including for an exotic invasive species. One theoretical paper warned that unknown kinship relationships between populations can result in the misidentification of adaptive trait divergence. A third synthesis paper formulated novel and ambitious goals for common-garden studies through including measurement of response variables at multiple levels of biological organization. The featured papers discuss multiple avenues for improving common garden studies. Genomic analysis, together with the quantification of kinship relationships, will continue to reveal the influence of environmental drivers on gene selection. Measuring a more complete set of fitness traits, especially for traits related to regeneration, will permit the development of projection models to explicitly link trait spectra, climate patterns and fitness consequences. More standardized data reporting will additionally improve abilities to synthesize findings across experiments. Testing population performance in competition with other species will produce more robust fitness comparisons between genotypes, especially for slower-growing genotypes in higher-resource environments. Adding gardens in and beyond climatic edge locations will furthermore strengthen the understanding of population failure and species exclusion. Finally, there is unrealized potential in adding ecosystem-level observations to common-garden studies that will enhance integrative analysis across scales of biological organization and scientific domains. Synthesis . With novel, creative designs, data integration and synthesis, common garden experiments will continue to advance the understanding of trait ensembles interacting with climate across scales of biological organization, provide pivotal data for global change models and guide ecological applications such as restoration of habitats for rare and climate sensitive species.

Journal of Ecology↗
USGS2023

Geospatial standard operating procedures of the Chesapeake Bay Program

Introduction The Chesapeake Bay Program (CBP) has operated a geographic information system (GIS) program since the early 1990s to address the established and growing need for and use of geospatial data, maps, and analysis within the CBP Partnership. This report is intended to detail the standard operating procedures of the CBP GIS program and address the quality assurance, quality control, and other technical activities that CBP will implement to ensure the commitment of the CBP GIS Team to performance standards (U.S. Environmental Protection Agency, 2003). The report is intended as an update to the 2011 Quality Assurance Project Plan (QAPP). For specialized tasks or analytical projects beyond the scope of this QAPP, a separate specialized QAPP with details on quality control, assurance procedures, and the geospatial methods associated with all aspects of the project may be required.

Open-File Report↗
USGS2009

Status Assessment of Laysan and Black-Footed Albatrosses, North Pacific Ocean, 1923-2005

Over the past century, Laysan (Phoebastria immutabilis) and black-footed (Phoebastria nigripes) albatrosses have been subjected to high rates of mortality and disturbance at the breeding colonies and at sea. Populations were greatly reduced and many colonies were extirpated around the turn of the 20th century as a result of feather hunting. Populations were recovering when military occupation of several breeding islands during World War II led to new population declines at these islands and additional colony extirpations. At sea, thousands of Laysan and black-footed albatrosses were killed each year in high-seas driftnet fisheries, especially from 1978 until the fisheries were banned in 1992. Through the 1990s, there was a growing awareness of the large numbers of albatrosses that were being killed in longline fisheries. During the 1990s, other anthropogenic factors, such as predation by non-native mammals and exposure to contaminants, also were documented to reduce productivity or increase mortality. In response to the growing concerns over the impacts of these threats on albatross populations, the U.S. Fish and Wildlife Service contracted with the U.S. Geological Survey to conduct an assessment of Laysan and black-footed albatross populations. This assessment includes a review of the taxonomy, legal status, geographic distribution, natural history, habitat requirements, threats, and monitoring and management activities for these two species. The second part of the assessment is an analysis of population status and trends from 1923 to 2005. Laysan and black-footed albatrosses forage throughout the North Pacific Ocean and nest on tropical and sub-tropical oceanic islands from Mexico to Japan. As of 2005, 21 islands support breeding colonies of one or both species. The core breeding range is the Hawaiian Islands, where greater than 99 percent of the World's Laysan albatrosses and greater than 95 percent of the black-footed albatrosses nest on the small islands and atolls of the Northwestern Hawaiian Islands. These islands are all protected as part of the Papahanaumokuakea Marine National Monument. Albatrosses are long-lived seabirds with deferred maturity, low fecundity, and high rates of adult survival. Their life history characteristics make populations especially vulnerable, to small increases in adult mortality. The primary threats to Laysan and black-footed albatrosses include interactions with commercial fisheries, predation by introduced mammals, reduced reproductive output due to contaminants, nesting habitat loss and degradation due to human development and invasive plant species, and potential loss and degradation of habitat due to climate change and sea-level rise. Incidental mortality (bycatch) in commercial fisheries is the greatest anthropogenic source of mortality (post-fledging) for both species. We found that longline fishing effort prior to the 1980s was greater than previously estimated and a very significant source of mortality. Regulations to minimize and monitor albatross mortality have been enacted in most U.S. and Canadian longline fisheries, but monitoring of bycatch rates and regulations to minimize seabird mortality are extremely limited in the much larger multinational longline fleets. Management to address threats at the breeding colonies is ongoing and includes eradication or control of non-native species, habitat management, and abatement programs to reduce impacts of contaminants. Effective long-term conservation and management of the Laysan and black-footed albatrosses require management and monitoring at the breeding colonies and at sea and continued assessment of population status and trends. We evaluated the status and trends of Laysan and black-footed albatross populations using linear regression, population viability analysis (PVA), and age-structured matrix models. Analyses were predominantly based on nest-count data gathered at French Frigate Shoals, Laysan Island, and Midw

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