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USGS1991

A scientifically based nationwide assessment of groundwater quality in the United States

Beginning in 1986, the U.S. Geological Survey began an effort to develop a National Water-Quality Assessment Program. The basic premise underlying this initiative is that a better understanding of the quality of water resources across the country, both surface- and groundwater, is needed to develop effective programs and policies to meet the nation's water-quality concerns. The program will focus on water-quality conditions that are prevalent or large in scale, such as occur from nonpoint sources of pollution or from a high density of point sources. The design of the program is substantially different from the traditional approach of a diffuse national monitoring network. The major activities of the assessment program will be clustered within a set of hydrologic systems (river basins and aquifer systems), referred to as study units. In aggregate, the study units will account for a large part of the nation's water use and represent a wide range of settings across the country. Unique attributes of the program include: (1) the use of consistent study approaches, field and laboratory methods, water-quality measurements, and ancillary data measurements for all study units; (2) the development of a progressive understanding of water-quality conditions and trends in each study unit through long-term studies that rotate periods of intensive data collection and analysis with periods during which the assessment activities are less intensive; and (3) the focus of considerable effort on synthesizing results from among the study units to provide information on regional and national water-quality issues. ?? 1991 Springer-Verlag New York Inc.

Environmental Geology and Water Sciences↗
USGS2019

The evolving threat of rapid Ohia death (ROD) to Hawaii’s native ecosystems and rare plant species

Hawai‘i’s most widespread native tree, ‘ōhi‘a lehua ( Metrosideros polymorpha ), has been dying across large areas of Hawai‘i Island mainly due to two fungal pathogens ( Ceratocystis lukuohia and Ceratocystis huliohia ) that cause a disease collectively known as Rapid ‘Ōhi‘a Death (ROD). Here we examine patterns of positive detections of C. lukuohia as it has been linked to the larger mortality events across Hawai‘i Island. Our analysis compares the environmental range of C. lukuohia and its spread over time through the known climatic range and distribution of ‘ōhi‘a. Analyses show this fungal pathogen generally encompassed the core, but not the extremes of the climatic range of ‘ōhi‘a. We further modeled the potential distribution of C. lukuohia across the Hawaiian Archipelago to estimate the risk of ROD to other islands. Given the potential for C. lukuohia to alter the structure of ‘ōhi‘a dominated forests, we used our projected potential distribution of C. lukuohia to assess the risk of ROD to threatened and endangered plant species across Hawai‘i. Many native plants are likely vulnerable to these types of large ‘ōhi‘a mortality events: of 234 endangered native plant species considered, 147 (62.8%) have more than half of their range within current and expanding C. lukuohia suitable areas. We also found evidence that protecting habitat by fencing out introduced feral ungulates reduces the prevalence of the disease likely by reducing physical damage caused by these animals to ‘ōhi‘a trees, a precondition for Ceratocystis infection. Given the ongoing spread of C. lukuohia , we developed a dynamic web portal to host our results online, where models and analyses are updated with new lab-confirmed detections to provide managers with a useful tool to help monitor and assess the risk of C. lukuohia as it continues to spread.

Hawaii↗
USGS2009

Pesticides in ground water in selected agricultural land-use areas and hydrogeologic settings in Pennsylvania, 2003-07

This report was prepared by the U.S. Geological Survey (USGS) in cooperation with the Pennsylvania Department of Agriculture (PDA) as part of the Pennsylvania Pesticides and Ground Water Strategy (PPGWS). Monitoring data and extensive quality-assurance data on the occurrence of pesticides in ground water during 2003–07 are presented and evaluated; decreases in the land area used for agriculture and corresponding changes in the use of pesticides also are documented. In the Pennsylvania ground waters assessed since 2003, concentrations of pesticides did not exceed any maximum contaminant or health advisory levels established by the U.S. Environmental Protection Agency; PPGWS actions are invoked by the PDA at fractions of these levels and were needed only in areas designated by the PDA for special ground-water protection. Previous investigations through 1998 of pesticides in Pennsylvania ground water identified land use, as a surrogate for pesticide use, and rock type of the aquifer combined with physiography as key hydrogeologic setting variables for understanding aquifer vulnerability to contamination and the common occurrence of atrazine and metolachlor in ground water. Of 20 major hydrogeologic settings in a framework established in 1999 for pesticide monitoring in Pennsylvania, 9 were identified as priorities for data collection in order to change the monitoring status from "inadequate" to "adequate" for the PPGWS. Agricultural and forested land-use areas are decreasing because of urban and suburban growth. In the nine hydrogeologic settings evaluated using 1992 and 2001 data, decreases of up to 12 percent for agricultural land and 10 percent for forested land corresponded to increases of up to 11 percent for urban land. Changes in agricultural pesticide use were computed from crop data. For example, from 1996 to 2004–05, atrazine use declined by about 15 percent to 1,314,000 lb/yr (pounds per year) and metolachlor use increased by about 20 percent to 895,000 lb/yr; these compounds are the two most-used agricultural pesticides statewide. In 2003–07, a baseline assessment of pesticides was conducted in five of nine hydrogeologic settings with inadequate monitoring data—the Blue Ridge crystalline and Triassic Lowland siliciclastic, Eastern Lake surficial, Devonian-Silurian carbonate, Great Valley siliciclastic, and Northeastern Glaciated surficial settings. Between 20 and 30 wells in each setting were monitored. Of the 126 wells sampled, 96 well-water samples were analyzed for at least 52 pesticide compounds at the USGS National Water Quality Laboratory (NWQL) using a method with a minimum reporting level (MRL) at or above 0.002 µg/L (micrograms per liter). Of the 96 well waters analyzed by NWQL, 43 had measureable concentrations of one or more pesticides. Atrazine and (or) deethylatrazine (CIAT), a degradation product of atrazine, were reported at or above the MRL in 39 of the 43 well waters. Neither atrazine nor CIAT were reported at concentrations exceeding 0.10 µg/L; all measured concentrations in these five settings were below PPGWS action levels. Metolachlor was present in 7 of the 43 well waters with measureable concentrations of 1 or more pesticides; however, concentrations were below the MRL. The other 30 samples (10 of 20 wells in the Blue Ridge crystalline and Triassic Lowland siliciclastic setting and all 20 wells in the Eastern Lake surficial setting) were analyzed for at least 19 pesticide compounds at the Pennsylvania Department of Environmental Protection Laboratory (PADEPL); the PADEPL reported no concentrations of pesticides at or above an MRL of 0.10 µg/L. Statistical tests using the NWQL analytical results showed correlations between pesticide occurrence and two indicators of water-quality degradation—the occurrence of total coliform bacteria and nitrate concentration. A 2 × 2 contingency-table test indicated a relation between presence or absence of atrazine or metolachlor and presence or absence of bacteria only for the 10 wells representing the Blue Ridge crystalline and Triassic Lowland siliciclastic setting. Results of Spearman’s rank test showed strong positive correlations in the Devonian-Silurian carbonate setting between 1) the number of pesticides above the MRLs and nitrate concentration, and 2) concentrations of atrazine and nitrate. Atrazine concentration and nitrate concentration also showed a statistically significant positive correlation in the Great Valley siliciclastic setting. An additional component of baseline monitoring was to evaluate changes in pesticide concentration in water from wells representing hydrogeologic settings most vulnerable to contamination from pesticides. In 2003, 16 wells originally sampled in the 1990s were resampled—4 each in the Appalachian Mountain carbonate, Triassic Lowland siliciclastic, Great Valley carbonate, and Piedmont carbonate settings. Nine of these wells, where pesticide concentrations from 1993 and 2003 were analyzed at the NWQL, were chosen for a paired-sample analysis using concentrations of atrazine and metolachlor. A statistically significant decrease in atrazine concentration was identified using the Wilcoxon signed-rank test (p = 0.004); significant temporal changes in metolachlor concentrations were not observed (p = 0.625). Monitoring in three areas of special ground-water protection, where selected pesticide concentrations in well water were at or above the PPGWS action levels, was done at wells BE 1370 (Berks County, Oley Township), BA 437 (Blair County, North Woodbury Township), and LN 1842 (Lancaster County, Earl Township). Co-occurrence of pesticide-degradation products with parent compounds was documented for the first time in ground-water samples collected from these three wells. Degradation products of atrazine, cyanazine, acetochlor, alachlor, and metolachlor were commonly at larger concentrations than the parent compound in the same water sample. Pesticide occurrence in water from wells neighboring the hot-spot wells was highly variable; however, the same sets of pesticide compounds that were present in wells BA 437, BE 1370, and LN 1842 were present to some degree in water from neighboring wells. To evaluate temporal changes in concentration, nonparametric statistical tests were used to determine overall and seasonal monotonic trends. Concentrations of alachlor, atrazine, metolachlor, and nitrate were examined using the 5-year (2003–07) and the long-term data from wells BA 437 and LN 1842 (1996–2007 and 1995–2007, respectively), and the long-term data for well BE 1370 (1998–2007); results showed either downward trends or no trends. Trends in acetochlor concentrations were tested only at well LN 1842 using the 5-year data; no trends were observed. Homogeneity of trend tests indicated statistically significant downward concentration trends in the long-term data were due to seasonal trends as follows: BA 437—alachlor and atrazine (summer); BE 1370—atrazine and metolachlor (winter) and alachlor (winter and spring); LN 1842—alachlor (summer and fall) and atrazine (spring and fall).

Pennsylvania↗
USGS2004

Surface-water-quality conditions and relation to taste-and-odor occurrences in the Lake Olathe Watershed, Northeast Kansas, 2000-02

Surface water in the Lake Olathe watershed, located in northeast Kansas, was sampled from June 2000 through December 2002 to characterize water-quality conditions in relation to physical properties, major ions, sediment, nutrients, selected trace elements, selected pesticides, fecal indicator bacteria, phytoplankton, and taste-and-odor compounds. In addition, two continuous real-time water-quality monitors were operated?one in Cedar Creek at Highway 56, the main tributary to Lake Olathe, and one in Lake Olathe, a supplemental domestic water supply and recreational resource for the city of Olathe. Median concentrations of dissolved and total forms of nitrogen and phosphorus in samples from Cedar Creek were larger than in samples from Lake Olathe, indicating that nutrients in the watershed were transported to Lake Olathe by Cedar Creek from June 2000 through December 2002. Increased concentrations of total phosphorus in samples from the hypolimnion of Lake Olathe compared to the epilimnion indicated that release of total phosphorus from bottom sediments occurred in the lake. Of the 50 pesticides analyzed in water samples from Cedar Creek and Lake Olathe, 10 pesticides were detected at concentrations greater than 0.01 microgram per liter in samples from Cedar Creek, and 9 pesticides were detected at concentrations greater than 0.01 microgram per liter in Lake Olathe, including four herbicides with concentrations exceeding 1.0 microgram per liter. Atrazine was detected at larger concentrations than any other pesticide in samples from both Cedar Creek and Lake Olathe during 2001 and 2002. Concentrations did not exceed the U.S. Environmental Protection Agency drinking-water annual average criterion of 3.0 micrograms per liter; however, concentrations in single samples were larger than 3.0 micrograms per liter. Regression analysis was used to assist in the estimation of sediment and chemical loads and yields. The estimated mean orthophosphate load for 2001 and 2002 represented 29 percent of the total phosphorus load to Lake Olathe. Estimated yields to Lake Olathe of both total nitrogen and total phosphorus, 13.0 and 1.1 pounds per acre per year, respectively, were consistent with mixed agricultural land use occurring in the watershed. Concentrations of fecal coliform bacteria samples from Lake Olathe were less than both primary and secondary single-sample criteria for recreational water in Kansas in place at the time of sampling. Sufficient samples were not collected to compare to the December 2003 Kansas Department of Health and Environment criteria, but single-sample Escherichia coli samples collected from Cedar Creek during storm runoff exceeded 2,000 colonies per 100 milliliters of water (former secondary recreation water-quality criterion for fecal coliform bacteria) in four of the seven samples collected. Water from Cedar Creek and Lake Olathe was analyzed in 2002 by enzyme-linked immunosorbent assay for microcystin-LR, a toxic algal compound. Concentrations of microcystin-LR in Lake Olathe during 2002 ranged from less than 0.1 to 0.41 microgram per liter, which is not considered a significant health risk according to guidelines published by the World Health Organization. Regression models were developed for four taste-and-odor phytoplankton species detected frequently in Lake Olathe? Melosira granulata, Anabaena, Oscillatoria, and Cryptomonas. The coefficient of determinations, R2, ranged from 0.64 to 0.89, and p-values ranged from less than 0.001 to 0.014, indicating a statistically significant relation with lake-residence time, specific conductance, turbidity, Secchi transparency depth, real-time continuous fluorescence, and total ammonia plus organic nitrogen as nitrogen. Actinomycetes, filamentous bacteria that are known producers of geosmin and 2-methylisoborneol (MIB), were sampled and analyzed in 2002 in water from Cedar Creek and Lake Olathe. In Lake Olathe, actinomycetes concentrations rang

Scientific Investigations Report↗
USGS2004

In-flight validation and recovery of water surface temperature with Landsat-5 thermal infrared data using an automated high-altitude lake validation site at Lake Tahoe

The absolute radiometric accuracy of the thermal infrared band (B6) of the Thematic Mapper (TM) instrument on the Landsat-5 (L5) satellite was assessed over a period of approximately four years using data from the Lake Tahoe automated validation site (California-Nevada). The Lake Tahoe site was established in July 1999, and measurements of the skin and bulk temperature have been made approximately every 2 min from four permanently moored buoys since mid-1999. Assessment involved using a radiative transfer model to propagate surface skin temperature measurements made at the time of the L5 overpass to predict the at-sensor radiance. The predicted radiance was then convolved with the L5B6 system response function to obtain the predicted L5B6 radiance, which was then compared with the radiance measured by L5B6. Twenty-four cloud-free scenes acquired between 1999 and 2003 were used in the analysis with scene temperatures ranging between 4/spl deg/C and 22/spl deg/C. The results indicate L5B6 had a radiance bias of 2.5% (1.6/spl deg/C) in late 1999, which gradually decreased to 0.8% (0.5/spl deg/C) in mid-2002. Since that time, the bias has remained positive (predicted minus measured) and between 0.3% (0.2/spl deg/C) and 1.4% (0.9/spl deg/C). The cause for the cold bias (L5 radiances are lower than expected) is unresolved, but likely related to changes in instrument temperature associated with changes in instrument usage. The in situ data were then used to develop algorithms to recover the skin and bulk temperature of the water by regressing the L5B6 radiance and the National Center for Environmental Prediction (NCEP) total column water data to either the skin or bulk temperature. Use of the NCEP data provides an alternative approach to the split-window approach used with instruments that have two thermal infrared bands. The results indicate the surface skin and bulk temperature can be recovered with a standard error of 0.6/spl deg/C. This error is larger than errors obtained with other instruments due, in part, to the calibration bias. L5 provides the only long-duration high spatial resolution thermal infrared measurements of the land surface. If these data are to be used effectively in studies designed to monitor change, it is essential to continue to monitor instrument performance in-flight and develop quantitative algorithms for recovering surface temperature.

IEEE Transactions on Geoscience and Remote Sensing↗
USGS2026

Distribution, abundance, breeding activities, and habitat use of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2020–24 summary report

Executive Summary The purpose of this report is to provide the Marine Corps with a summary of abundance, breeding activity, demography, and habitat use of endangered Least Bell’s Vireos ( Vireo bellii pusillus ) at Marine Corps Base Camp Pendleton, California (MCBCP or Base). The report presents results of vireo surveys and monitoring in 2024 and summarizes a subset of data collected from 2020 through 2024. Surveys for the Least Bell's Vireo were completed at MCBCP between April 4 and July 9, 2024. Core survey areas and a subset of non-core areas in drainages containing riparian habitat suitable for vireos were surveyed two to four times. We detected 542 territorial male vireos and 17 transient vireos in core survey areas. An additional 102 territorial male vireos and 2 transients were detected in non-core survey areas. Transient vireos were detected on 5 of the 10 drainages/sites surveyed (core and non-core areas). In core survey areas, 87 percent of vireo territories were on the four most populated drainages, with the Santa Margarita River containing 67 percent of all territories in core areas surveyed on Base. In core areas, 77 percent of male vireos were confirmed as paired; 76 percent of male vireos in non-core areas were confirmed as paired. The number of documented Least Bell’s Vireo territories in core survey areas on MCBCP decreased 3 percent from 2023. In five core survey area drainages, the number of territories increased by at least two, and in two core survey area drainages, the Santa Margarita River and Las Flores Creek, the number of vireo territories decreased by at least nine between 2023 and 2024. The number of vireo territories at Marine Corps Air Station, Camp Pendleton did not change from 2023 to 2024. The proportion of surveys during which Brown-headed Cowbirds ( Molothrus ater ) were detected decreased to 0.03 from a peak of 0.45 in 2022. Cowbirds were detected in April and June in 2024. Most core-area vireos (58 percent, including transients) used mixed willow ( Salix spp.) riparian habitat. An additional 9 percent of birds occupied willow habitat co-dominated by Western sycamores ( Platanus racemosa ). Riparian scrub dominated by mule fat ( Baccharis salicifolia ), sandbar willow ( S. exigua ), or blue elderberry ( Sambucus mexicana ) was used by 33 percent of vireos. Habitat dominated by non-native vegetation was used by 1 percent of vireos. Since 2020, the number of vireos detected in each of the non-core survey groups was greater than expected, based on the change in vireo numbers in core survey areas. Although, the number of vireo territories on Base decreased from 2020–24, from approximately 1,224 to approximately 960, the trend in vireo territory numbers on Base since 2005 has been positive. In 2019, MCBCP began operating an artificial seep along the Santa Margarita River; then, in 2021, two additional artificial seeps became operational. The artificial seeps pumped water to the surface during daylight hours starting in mid-April and ending in August each year and were designed to increase the amount of surface water to enhance Southwestern Willow Flycatcher ( Empidonax traillii extimus ) breeding habitat. Although this enhancement was designed to benefit flycatchers, few flycatchers have inhabited MCBCP, including the seep areas, within the past several years; therefore, vireos were selected as a surrogate species to determine effects of the habitat enhancement. This report presents the fifth year of annual monitoring and analyses summarizing all 5 years of vireo and vegetation response to the artificial seeps. In 2020, we established four study sites along the Santa Margarita River, two surrounding and extending downstream from existing and proposed seep pumps at the Old Treatment Ponds and along Pump Road and two Reference sites in similar habitat downstream from the Seep sites. Seep pumps began operating at the Old Treatment Ponds in 2020 and along Pump Road in 2021. In 2023, seep pumps at the Pump Road Seep site did not function, and we recategorized that study site as Intermediate. We sampled vegetation at Seep, Intermediate, and Reference sites to determine the effects of surface-water enhancement by seep pumps. In 2024, vegetation cover was highest near the ground and decreased with increasing height. Woody vegetation made up most of the cover at all height categories. We determined that Seep and Intermediate sites differed from each other in addition to differing from Reference sites, which likely is, in part, because seep-pump operation at the Intermediate site was inconsistent compared to the Seep site. Soil saturation in 2024 was high at the Intermediate site and was associated with high native herbaceous cover and low non-native herbaceous cover. Sites differed, with the Intermediate site having more upper canopy cover in general, the Seep site having more low woody cover, and the Reference sites having more mid-canopy non-native vegetation cover. Soil saturation significantly increased from 2020 through 2024 at the Seep site and was significantly higher at Seep and Intermediate sites than at their paired Reference sites in all years. Soil saturation likely was increased by the supplemental surface water at the Seep site. However, soil saturation at the Intermediate site was not clearly associated with seep pumps but likely affected by soil saturation at the site before seep-pump installation and flooding from high precipitation. Canopy height increased at the Intermediate site from 2020 through 2024 and increased with increasing soil saturation at the Intermediate and Reference sites. The canopy at the Seep site was shorter than at the Intermediate and Reference sites and decreased from 2020 through 2024 because tall trees were damaged and killed by shothole borer beetles ( Euwallacea spp.). We used Redundancy Analysis to discover associations among vegetation types, plant species, and other environmental variables (soil saturation, site, precipitation, and seep operation, defined as the site and year seep pumps were operating). These associations explained less than 15 percent of the variability in the vegetation, with the remaining 85 percent of variation unexplained. Generally, as soil saturation increased, understory vegetation increased and non-native cover decreased in the mid-and upper canopy. Non-native herbaceous plant species decreased in wetter soil. The Seep site was characterized by more understory and less canopy, contrasting with the Intermediate site, which was characterized by less understory and more higher canopy cover. The addition of surface water via seep pumps or precipitation was associated with more vegetation near the ground. Higher early winter precipitation was associated with taller canopy and more woody vegetation in the upper canopy. We also created a Redundancy Analysis model isolating the components of Southwestern Willow Flycatcher habitat, as identified by Howell and others (2018). In this model, increased soil saturation resulted in increased cover of stinging nettle ( Urtica dioica ) and black willow ( Salix gooddingii ) below 3 meters (m), total cover 3–6 m, and black willow above 6 m. Cover of poison hemlock ( Conium maculatum ) and stinging nettle below 3 m was higher at the Seep site and lower at the Intermediate site. Vireo territory density among the Seep, Intermediate, and Reference sites was similar before the seep pumps were installed. However, vireo territory density at Seep and Intermediate sites combined was significantly higher than at Reference sites after the seep pumps were installed. We banded and resighted color banded vireos as part of a long-term evaluation of vireo survival, site fidelity, between-year movement, and the effect of surface-water enhancement on vireo return rate and between-year movement. We banded 164 Least Bell's Vireo nestlings during the 2024 season. In 2024, we resighted 31 Least Bell's Vireos on Base that had been banded before the 2024 breeding season, and we were able to identify 25 of them. Of the 25 that we could identify, 24 were banded on Base and 1 was originally banded on the San Luis Rey River. Adult birds of known age ranged from 1 to 9 years old. Base-wide survival of vireos was affected by sex, age, and year. Males had significantly higher annual survival than females (60 percent versus 47 percent, respectively). Adults had higher annual survival than first-year vireos (61 percent versus 11 percent, respectively). The return rate of adult vireos to Seep, Intermediate, or Reference sites was not affected by the original banding site (Seep versus Intermediate versus Reference). Most returning adult vireos, predominantly males, showed strong between-year site fidelity. Of the adults present in 2023, 92 percent (all males) returned in 2024 to within 100 m of their previous territory. The average between-year movement for returning adult vireos was 0.4±0.03 kilometers (km). The average movement of first-year vireos detected in 2024 that fledged from a known nest on MCBCP in 2023 was 2.4±3.1 km. We monitored 47 Least Bell's Vireo pairs to evaluate the effects of surface-water enhancement on nest success and breeding productivity. Breeding productivity in 2024 was similar among Seep, Intermediate, and Reference sites (2.8, 3.0, and 3.0 young fledged per pair, respectively), and the percentage of pairs that fledged at least one young was not significantly different among sites (83, 91, and 96 percent, respectively). According to the best model, daily nest survival from 2020–24 was not related to site. Other measures of breeding productivity were also similar among Seep, Intermediate, and Reference site pairs. Between 2020 and 2024, the number of vireo fledglings produced per pair increased with increasing native herbaceous cover under 3 m and decreasing cover of all herbaceous vegetation under 5 m and was not affected by precipitation, site, or seep operation. The number of vireo fledglings produced per egg was lower at the Seep and Intermediate sites than at the Reference sites and increased with decreasing late winter precipitation, cover of poison hemlock, black mustard, non-native vegetation above 2 m, and all vegetation over 2 m. Vireo pairs at Seep and Intermediate sites were less likely to fledge young than vireo pairs at Reference sites. All vireo pairs were more likely to fledge young with less cover of poison hemlock and more cover of poison oak. From 2020 through 2024, vireos placed their nests in 24 plant species. The most used plants in all years were willows, mostly red ( S. laevigata ), or arroyo ( S. lasiolepis ). The fate of a vireo nest (whether it successfully fledged young or not) was not affected by placement in native or non-native vegetation, by site, or by year, but nests were more likely to be successful if they were placed in woody plants than in herbaceous plants. Successful nests were placed higher in the host plant and farther from the outer edge of the nest clump than unsuccessful nests.

California↗
USGS2024

Characterizing the areal extent of PFAS contamination in fish species downgradient of AFFF source zones

Most monitoring programs next to large per- and polyfluoroalkyl substances (PFAS) sources focus on drinking water contamination near source zones. However, less is understood about how these sources affect downgradient hydrological systems and food webs. Here, we report paired PFAS measurements in water, sediment, and aquatic biota along a hydrological gradient away from source zones contaminated by the use of legacy aqueous film-forming foam (AFFF) manufactured using electrochemical fluorination. Clustering analysis indicates that the PFAS composition characteristic of AFFF is detectable in water and fishes >8 km from the source. Concentrations of 38 targeted PFAS and extractable organofluorine (EOF) decreased in fishes downgradient of the AFFF-contaminated source zones. However, PFAS concentrations remained above consumption limits at all locations within the affected watershed. Perfluoroalkyl sulfonamide precursors accounted for approximately half of targeted PFAS in fish tissues, which explain >90% of EOF across all sampling locations. Suspect screening analyses revealed the presence of a polyfluoroketone pharmaceutical in fish species, and a fluorinated agrochemical in water that likely does not accumulate in biological tissues, suggesting the presence of diffuse sources such as septic system and agrochemical inputs throughout the watershed in addition to AFFF contamination. Based on these results, monitoring programs that consider all hydrologically connected regions within watersheds affected by large PFAS sources would help ensure public health protection.

Massachusetts↗
USGS2004

Summary of studies supporting cumulative effects analysis of upper Yellowstone River channel modifications

During the last several decades, portions of the upper Yellowstone River have been modified for flood control and erosion prevention. The U.S. Army Corps of Engineers is responsible for administration of a permit program for evaluating construction activities affecting rivers, streams, and wetlands. The Corps regulates activities under the authority of Section 10 of the Rivers and Harbors Act and Section 404 of the Clean Water Act. Since assumption of jurisdiction in the mid-1970’s, the Corps has processed a total of 156 permit actions for the upper Yellowstone River. Over two-thirds of the permit actions occurred during or after two consecutive large floods during 1996 and 1997. In response to concern regarding the potential environmental and ecological consequences of channel modification, the Corps, in conjunction with State and local government agencies, initiated a series of scientific studies to better understand the effects of channel modification in the upper Yellowstone River (Figure 1). These included preparation of wetland and riparian inventory maps (Bon, 2001); hydraulic modeling and flood-plain delineation; watershed land-cover assessment (Pick and Potter, 2003); historic bottomland use analysis (Brelsford and others, 2003); analysis of channel modification effects on fish habitat (Bowen and others, 2003); comparison of juvenile salmonid use of modified and unmodified habitats (Zale and Rider, 2003); analysis of riparian vegetation and flood-plain turnover (Merigliano and Polzin, 2003); study of the relations between riparian habitat and bird communities (Hansen and others, 2003); analyses of geomorphology and historical channel changes (Dalby and Robinson, 2003); socioeconomic assessment (BBC Research and Consulting, 2002); and sediment transport investigations and modeling (Holnbeck, 2003). This report is a summary of results from the individual scientific studies as they bear on future programmatic cumulative effects analyses of channel modification of the upper Yellowstone River. We do not attempt a formal, cumulative impact assessment in the sense of evaluating alternatives or future scenarios. The first section presents major findings of the resource studies in terms of temporal comparisons, spatial comparisons, and causal relations. In this section, we present a series of conceptual models or flow diagrams of the major causal pathways of cumulative impacts from channel modification. These represent major pathways of potential impact based on knowledge from other rivers, concerns expressed about the upper Yellowstone, and results from the scientific studies. These diagrams serve to focus interpretation of study results as either supporting or not supporting the importance and magnitude of particular causal relations and to identify key linking variables appearing in multiple causal pathways. These key variables that connect channel modification actions to multiple, valued environmental attributes can serve as the foundation for both projecting and monitoring future responses of the system. A section on analytical realities outlines some of the limitations of projecting cumulative impacts from channel modification of the upper Yellowstone River on meaningful spatial and temporal scales and some of the difficulties of interpreting results from studies conducted shortly after two extreme floods and substantial increases in channel modification. A section on classification describes the two primary geomorphic classification systems of the upper Yellowstone River used in the various individual resource studies. Each of these systems has been valuable in supporting field sampling and expressing results concerning patterns of variation. Their integration or revision into a classification system to achieve some new purpose, such as a regulatory program or monitoring system, will depend on a crisp articulation of riverine management or regulatory objectives. A section on key variables identifies those that are central to the causal pathways connecting channel modification to impacts and provides a rationale for key variables as an alternative to other tools such as Proper Functioning Condition (Barrett and others, 1993), Index of Biotic Integrity (Karr, 1981), or the Synoptic Approach (Liebowitz and others, 1992). This section also explains relations among key variable to Hydrogeomorphic (HGM) assessment procedures (Hauer and Smith, 1998; Hauer and others, 2001) and outlines how these 2 variables might be monitored to track cumulative impacts. Examples of how selected key variables can be quantified using Geographic Information System data sets developed from the resource studies are presented for one reach. The largest portion of the document is an Appendix that summarizes each of the individual scientific studies in terms of scope and methods, findings, principal variables, and metrics used in the study or suggested by the study results, and important needs for further study.

Montana↗
USGS2012

Pyrethroid insecticides in bed sediments from urban and agricultural streams across the United States

Pyrethroid insecticides are hydrophobic compounds that partition to streambed sediments and have been shown to cause toxicity to non-target organisms; their occurrence is well documented in parts of California, but there have been limited studies in other urban and agricultural areas across the United States. To broaden geographic understanding of pyrethroid distributions, bed sediment samples were collected and analyzed from 36 streams in 25 states, with about 2/3 of the sites in urban areas and 1/3 in agricultural areas. At least one pyrethroid (of the 14 included in the analysis) was detected in 78% of samples. Seven pyrethroids were detected in one or more samples. Bifenthrin was the most frequently detected (58% of samples), followed by permethrin (31%), resmethrin (17%), and cyfluthrin (14%). The other three detected pyrethroids (cyhalothrin, cypermethrin and delta/tralomethrin) were found in two or fewer of the samples. Concentrations ranged from 0.3 to 180 ng g -1 dry weight. The number of pyrethroids detected were higher in the urban samples than in the agricultural samples, but the highest concentrations of individual pyrethroids were split between urban and agricultural sites. The pyrethroids detected in the agricultural areas generally followed use patterns. Predicted toxicity was greater for urban areas and attributed to bifenthrin, cyfluthrin and cypermethrin, while in agricultural areas the toxicity was mainly attributed to bifenthrin.

Journal of Environmental Monitoring↗
USGS2025

The continued decline of the Palila (Loxioides bailleui) on Mauna Kea, Island of Hawaiʻi

Palila ( Loxioides bailleui ) are critically endangered Hawaiian honeycreepers specializing on māmane ( Sophora chrysophylla ) seeds and restricted to Mauna Kea volcano on the Island of Hawaiʻi. Recently, the population was estimated to decline by 89% between 1998 and 2021, despite decades of ungulate removal, fence construction, māmane regeneration, fire suppression, and predator control. To inform managers with the most recent update on the status and trends of the Palila population, we analyzed annual bird survey data collected using point-transect distance sampling since 1998, including new annual survey data from 2022, 2023, and 2024. Prior to analysis, we predicted the population trajectory would change between 2021 and 2024 because of continued management actions promoting habitat recovery. We used distance sampling, log-linear regression, and state-space modeling to produce the new estimates and analyze trends across the time series. The 2022 population estimate was 367 to 742 birds (95% confidence interval; point estimate: 545), the lowest in recorded history. The 2023 and 2024 estimates of 374 to 842 birds (point estimate: 596) and 412 to 970 birds (point estimate: 666) were the second and third lowest in our time series, respectively. Our estimates for years before 2022 show population fluctuations between 4000 to 6800 birds from 1998 to 2005, then a steep decline through 2010. For the next decade, abundance fluctuated around 1000 birds, before declining again in 2021 to less than 700 birds. From 1998 to 2024, the population declined by more than 90%, or 205 birds per year, with 100% statistical support for an overall downward trend, despite significant management efforts and research. The greatest threats facing the Palila, if familiar, are not being eliminated swiftly enough to promote their recovery. The currently small and range-limited population is vulnerable to future climate-related events such as drought and fire. Continued monitoring can help to assess the response of Palila to adaptive management actions and changing environmental conditions.

Hawaii↗
USGS1998

Bacteriophage PRD1 and silica colloid transport and recovery in an iron oxide-coated sand aquifer

Bacteriophage PRD1 and silica colloids were co-injected into sewage-contaminated and uncontaminated zones of an iron oxide-coated sand aquifer on Cape Cod, MA, and their transport was monitored over distances up to 6 m in three arrays. After deposition, the attached PRD1 and silica colloids were mobilized by three different chemical perturbations (elevated pH, anionic surfactant, and reductant). PRD1 and silica colloids experienced less attenuation in the contaminated zone where adsorbed organic matter and phosphate may be hindering attachment of PRD1 and silica colloids to the iron oxide coatings. The PRD1 collision efficiencies agree well with collision efficiencies predicted by assuming favorable PRD1 deposition on iron oxide coatings for which the surface area coverage was measured by microprobe analysis of sediment thin sections. ζ potentials of the PRD1, silica colloids, and aquifer grains corroborated the transport results, indicating that electrostatic forces dominated the attachment of PRD1 and silica colloids. Elevated pH was the chemical perturbation most effective at mobilizing the attached PRD1 and silica colloids. Elevated surfactant concentration mobilized the attached PRD1 and silica colloids more effectively in the contaminated zone than in the uncontaminated zone.

Environmental Science & Technology↗
USGS2000

Forecasting selenium discharges to the San Francisco Bay-Delta Estuary: Ecological effects of a proposed San Luis drain extension

During the next few years, federal and state agencies may be required to evaluate proposals and discharge permits that could significantly change selenium (Se) inputs to the San Francisco Bay-Delta Estuary (Bay-Delta), particularly in the North Bay (i.e., Suisun Bay and San Pablo Bay). These decisions may include discharge requirements for an extension of the San Luis Drain (SLD) to the estuary to convey subsurface agricultural drainage from the western San Joaquin Valley (SJV), a renewal of an agreement to allow the existing portion of the SLD to convey subsurface agricultural drainage to a tributary of the San Joaquin River (SJR) (coincident with changes in flow patterns of the lower SJR), and refinements to promulgated Se criteria for the protection of aquatic life for the estuary. Understanding the biotransfer of Se is essential to evaluating the fate and impact of proposed changes in Se discharges to the Bay-Delta. However, past monitoring programs have not addressed the specific protocols necessary for an element that bioaccumulates. Confusion about Se threats in the past have stemmed from failure to consider the full complexity of the processes that result in Se toxicity. Past studies show that predators are more at risk from Se contamination than their prey, making it difficult to use traditional methods to predict risk from environmental concentrations alone. In this report, we employ a novel procedure to model the fate of Se under different, potentially realistic load scenarios from the SJV. For each potential load, we progressively forecast the resulting environmental concentrations, speciation, transformation to particulate form, bioaccumulation by invertebrates, trophic transfer to predators, and effects in those predators. Enough is known to establish a first order understanding of effects should Se be discharged directly into the North Bay via a conveyance such as the SLD. Our approach uses 1) existing knowledge concerning the biogeochemical reactions of Se (e.g., speciation, partitioning between dissolved and particulate forms, and bivalve assimilation efficiency) and 2) site-specific data mainly from 1986 to 1996 on clams and bottom-feeding fish and birds. Forecasts of Se loading from oil refineries and agricultural drainage from the SJV enable the calculation of a composite freshwater endmember Se concentration at the head of the estuary and at Carquinez Strait as a foundation for modeling. Our analysis of effects also takes into account the mode of conveyance for agricultural drainage (i.e., the SLD or SJR). The effects of variable flows on a seasonal or monthly basis from the Sacramento River and SJR are also considered. The results of our forecasts for external SJV watershed sources of Se mirror predictions made since 1955 of a worsening salt (and by inference, Se) buildup exacerbated by the arid climate and irrigation for agricultural use. We show that the reservoir of Se in the SJV is sufficient to provide loading at an annual rate of approximately 42,500 pounds (lbs) of Se to a Bay-Delta disposal point for 63 to 304 years at the lower range of our projections, even if influx of Se from the California Coast Ranges could be curtailed. Disposal of wastewaters on an annual basis outside of the SJV may slow the degradation of valley resources, but drainage alone cannot alleviate the salt and Se buildup in the SJV, at least within a century. Our forecasts show the different proportions of Se loading to the Bay-Delta. Oil refinery loads from 1986 to 1992 ranged from 11 to 15 lbs Se per day; with treatment and cleanup, loads decreased to 3 lbs Se per day in 1999. In contrast, SJV agricultural drainage loads could range from of 45 to 117 lbs Se per day across a set of reasonable conditions. Components of this valley-wide load include five source subareas (i.e., Grassland, Westlands, Tulare, Kern, and Northern) based on water and drainage management. Loads vary per subarea mainly because of proximity of the s

California↗
USGS2020

Use of time domain electromagnetic soundings and borehole electromagnetic induction logs to delineate the freshwater/saltwater interface on southwestern Long Island, New York, 2015–17

The U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, used surface and borehole geophysical methods to delineate the freshwater/saltwater interface in coastal plain aquifers along the southwestern part of Long Island, New York. Over pumping of groundwater in the early 20th century combined with freshwater/saltwater interfaces at the coastline created saltwater intrusion in the upper glacial, Jameco, Magothy, and Lloyd aquifers. This study documents, for the first time, extensive saltwater intrusion of the Lloyd aquifer along the southwestern coast of Long Island, N.Y. Several public-supply wells in the southern parts of Nassau, Queens, and Kings Counties have been adversely affected by saltwater intrusion causing supply wells to be shutdown and abandoned. Due to the ongoing groundwater pumping in southern Nassau County, the freshwater/saltwater interface requires delineation and monitoring for any inland movement. In 2015–17, the U.S. Geological Survey collected time domain electromagnetic soundings at 12 locations and borehole electromagnetic induction conductivity logs at 9 wells within the study area to delineate several saltwater intrusion wedges. The upper glacial, Jameco, and Magothy aquifers were grouped into one aquifer complex within the study area to simplify interpretations. The coastal plain sediments increase in thickness from west to east and north to south because of their regional dip toward the southeast. Three separate wedges, shallow, intermediate, and deep, of saltwater intrusion were delineated in the upper glacial, Jameco, and Magothy aquifer complex. In addition, analysis of geophysical logs collected in an open borehole of a test well in southern Queens County in 1989 revealed the Lloyd aquifer was nearly completely intruded by saltwater with an estimated chloride concentration of 15,000 milligrams per liter. The geophysical logs from this well provides, for the first time, definitive proof of saltwater intrusion of the Lloyd aquifer on Long Island’s south shore, suggesting the freshwater/saltwater interface was at the coastline and not miles offshore as theorized by previous studies.

New York↗
USGS2006

Monitoring and modeling to predict Escherichia coli at Presque Isle Beach 2, City of Erie, Erie County, Pennsylvania

The Lake Erie shoreline in Pennsylvania spans nearly 40 miles and is a valuable recreational resource for Erie County. Nearly 7 miles of the Lake Erie shoreline lies within Presque Isle State Park in Erie, Pa. Concentrations of Escherichia coli (E. coli) bacteria at permitted Presque Isle beaches occasionally exceed the single-sample bathing-water standard, resulting in unsafe swimming conditions and closure of the beaches. E. coli concentrations and other water-quality and environmental data collected at Presque Isle Beach 2 during the 2004 and 2005 recreational seasons were used to develop models using tobit regression analyses to predict E. coli concentrations. All variables statistically related to E. coli concentrations were included in the initial regression analyses, and after several iterations, only those explanatory variables that made the models significantly better at predicting E. coli concentrations were included in the final models. Regression models were developed using data from 2004, 2005, and the combined 2-year dataset. Variables in the 2004 model and the combined 2004-2005 model were log10 turbidity, rain weight, wave height (calculated), and wind direction. Variables in the 2005 model were log10 turbidity and wind direction. Explanatory variables not included in the final models were water temperature, streamflow, wind speed, and current speed; model results indicated these variables did not meet significance criteria at the 95-percent confidence level (probabilities were greater than 0.05). The predicted E. coli concentrations produced by the models were used to develop probabilities that concentrations would exceed the single-sample bathing-water standard for E. coli of 235 colonies per 100 milliliters. Analysis of the exceedence probabilities helped determine a threshold probability for each model, chosen such that the correct number of exceedences and nonexceedences was maximized and the number of false positives and false negatives was minimized. Future samples with computed exceedence probabilities higher than the selected threshold probability, as determined by the model, will likely exceed the E. coli standard and a beach advisory or closing may need to be issued; computed exceedence probabilities lower than the threshold probability will likely indicate the standard will not be exceeded. Additional data collected each year can be used to test and possibly improve the model. This study will aid beach managers in more rapidly determining when waters are not safe for recreational use and, subsequently, when to issue beach advisories or closings.

Pennsylvania↗
USGS1998

Ground-water age and atmospheric tracers: Simulation studies and analysis of field data from the Mirror Lake site, New Hampshire

The use of environmental tracers in characterization of ground-water systems is investigated through mathematical modeling of ground-water age and atmospheric tracer transport, and by a field study at the Mirror Lake site, New Hampshire. Theory is presented for modeling ground-water age using the advective-dispersive transport equation. The transport equation includes a zero-order source of unit strength, corresponding to the rate of aging, and can accommodate matrix diffusion and other exchange processes. The effect of temperature fluctuations and layered soils on transport of atmospheric gases to the water table is investigated using a one-dimensional numerical model of chlorofluorocarbon (CFC-11) transport. The nonlinear relation between temperature and Henry's Law coefficient (reflecting air/water phase partitioning) can cause the apparent recharge temperature to be elevated above the annual mean temperature where the water table is shallow. In addition, fine-grained soils can isolate the air phase in the unsaturated zone from the atmosphere. At the USGS' Mirror Lake, New Hampshire fractured-rock research site CFC concentrations near the water table are depleted where dissolved oxygen is low. CFC-11 and CFC-113 are completely absent under anaerobic conditions, while CFC-12 is as low as one-third of modern concentrations. Anaerobic biodegradation apparently consumes CFC's near the water table at this site. One area of active degradation appears to be associated with streamflow loss to ground water. Soil gas concentrations are generally close to atmospheric levels, although some spatial correlation is observed between depleted concentrations of CFC-11 and CFC-113 in soil gas and water-table samples. Results of unsaturated-zone monitoring indicate that recharge occurs throughout the year in the watershed, even during summer evapotranspiration periods, and that seasonal temperature fluctuations occur as much as 5 meters below land surface. Application of ground-water age and CFC-11 transport models to the large-scale ground-water system at Mirror Lake illustrates the similarities between age and chemical transport. Generally, bedrock porosities required to match observed apparent ages from CFC concentrations are high relative to porosities measured on cores. Although matrix diffusion has no effect on steady-state age, it can significantly reduce CFC concentrations in fractured rock in which the effective porosity is low.

New Hampshire↗
USGS2004

The effects of macroinvertebrate taxonomic resolution in large landscape bioassessments: An example from the Mid-Atlantic Highlands, U.S.A.

1. During late spring 1993-1995, the U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP) sampled 490 wadeable streams in the mid-Atlantic Highlands (MAH) of the U.S. for a variety of physical, chemical and biological indicators of environmental condition. We used the resulting data set to evaluate the importance of differing levels of macroinvertebrate taxonomic resolution in bioassessments by comparing the ability of family versus genus to detect differences among sites classified by type and magnitude of human impact and by stream size. We divided the MAH into two physiographic regions: the Appalachian Plateau where mine drainage (MD) and acidic deposition are major stressors, and the Ridge and Valley where nutrient enrichment is a major stressor. Stream sites were classified into three or four impact classes based on water chemistry and habitat. We used stream order (first to third Strahler order) in each region as a measure of stream size. Ordination, 2 x 2 chi-square and biotic metrics were used to compare the ability of family and genus to detect differences among both stressor and size classes. 2. With one notable exception, there were only a small number of different genera per family (interquartile range = 1-4). Family Chironomidae, however, contained 123 different genera. As a result, significant information loss occurred when this group was only classified to family. The family Chironomidae did not discriminate among the predefined classes but many chironomid genera did: by chi-square analysis, 10 and 28 chironomid genera were significant in discriminating MD and nutrient impacts, respectively. 3. Family and genus data were similar in their ability to distinguish among the coarse impacts (e.g. most severe versus least severe impact classes) for all cases. Though genus data in many cases distinguished the subtler differences (e.g. mixed/moderate impacts versus high or low impacts) better than family, differences in significance levels between family and genus analyses were relatively minor. However, genus data detected differences among stream orders in ordination analyses that were not revealed at the family level. In the ordinations, both family and genus levels of analysis responded to similar suites of environmental variables. 4. Our results suggest that identification to the family level is sufficient for many bioassessment purposes. However, identifications to genus do provide more information in genera-rich families like Chironomidae. Genus or finer levels of identification are important for investigating natural history, stream ecology, biodiversity and indicator species. Decisions about the taxonomic level of identification need to be study specific and depend on available resources (cost) and study objectives.

Freshwater Biology↗
USGS2020

Modeling occupancy of rare stream fish species in the upper Cumberland and Kentucky River Basins

Biological conservation often requires an understanding of how environmental conditions affect species occurrence and detection probabilities. We used a hierarchical framework to evaluate these effects for several Appalachian stream fish species of conservation concern: Chrosomus cumberlandensis (BSD; blackside dace), Etheostoma sagitta (CAD; Cumberland arrow darter), and Etheostoma spilotum (KAD; Kentucky arrow darter). Etheostoma susanae (Cumberland darter) also is present in the study area but was too rare to model in this analysis. In this study, conducted by the U.S. Geological Survey in cooperation with the U.S. Fish and Wildlife Service, fish and habitat data were collected from 205 randomly selected stream sites in the upper Cumberland and Kentucky River Basins (120 and 85 sites, respectively) of Kentucky and Tennessee. Sites were sampled with 10 spatial replicates (2 meter x 5 meter electrofishing zones) to enable estimation of detection probabilities and environmental effects. The best models (that is, lowest Akaike information criterion scores) showed the effects of agriculture (negative) on occurrence of BSD and stream conductivity (negative) on occurrence of CAD and KAD. These effects were statistically more important than measures of basin area, elevation, and substrate size. Conductivity and agriculture showed nonlinear effects on species occurrence, and effects of conductivity were more precise above 400 microsiemens per centimeter than below this threshold. Models incorporated detection-level effects of electrofishing time (positive), flow velocity (negative), sand substrate (positive), and gravel/cobble substrate (negative). Models accounting for detection of BSD estimated occupancy rates similar to the observed proportion of occupied sites (0.10), but the best-supported models for CAD and KAD increased expected occupancy by about 4 percent for each species (from 0.17 to 0.21 for CAD and from 0.07 to 0.11 for KAD). Results of this study provide new inferences for modeling stream fish occurrence and detection processes and highlight the importance of continued monitoring and assessment of rare fish species in Appalachian headwater streams.

Kentucky, Tennessee, Virginia↗
USGS1999

Occurrence, distribution, and trends of volatile organic compounds in the Ohio River and its major tributaries, 1987-96

The Ohio River is a source of drinking water for more than 3 million people. Thus, it is important to monitor the water quality of this river to determine if contaminants are present, their concentrations, and if water quality is changing with time. This report presents an analysis of the occurrence, distribution, and trends of 21 volatile organic compounds (VOCs) along the main stem of the Ohio River and its major tributaries from 1987 through 1996. The data were collected by the Ohio River Valley Water Sanitation Commission's Organics Detection System, which monitors daily for VOCs at 15 stations. Various statistical methods were applied to basinwide data from all monitoring stations and to data from individual monitoring stations. For the basinwide data, one or more VOCs were detected in 45 percent of the 44,837 river-water samples. Trichloromethane, detected in 26 percent of the samples, was the most frequently detected VOC followed by benzene (11 percent), methylbenzene (6.4 percent), and the other 18 VOCs, which were detected in less than 4 percent of the samples. In samples from 8 of the 15 monitoring stations, trichloromethane was also the most frequently detected VOC. These stations were generally near large cities along the Ohio River. The median trichloromethane concentration was 0.3 microgram per liter (μg/L), and concentrations ranged from less than 0.1 to 125.3 μg/L. Most of the VOCs had median detected concentrations that ranged from 0.1 to 0.4 μg/L for the basinwide data and for samples from individual stations. Samples from stations in the upstream part of the basin and from the Kanawha River had the highest median concentrations. Ninety-nine percent of the detected VOC concentrations were within U.S. Environmental Protection Agency drinking-water regulations. Of the 268 exceedances of drinking-water regulations, 188 were due to the detection of 1,2-dichloroethane prior to 1993 in samples from the monitoring station near Paducah, Ky. Time trend analyses indicated that most VOCs had no trend in samples at most monitoring stations because they were detected infrequently. At one or more stations, 14 VOCs had decreasing trends in monthly mean concentrations that ranged from -0.01 to -0.42 μ/L per year. Nine VOCs had significant decreasing trends in percentage detection that ranged from -1.08 to -12.90 percent per year. These trends suggest that source-control efforts are working and that water quality is improving.

Ohio River↗