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Functional requirements of computer systems for the U.S. Geological Survey, Water Resources Division, 1988-97

Investigating the occurrence, quantity, quality, distribution, and movement of the Nation 's water resources is the principal mission of the U.S. Geological Survey 's Water Resources Division. Reports of these investigations are published and available to the public. To accomplish this mission, the Division requires substantial computer technology to process, store, and analyze data from more than 57,000 hydrologic sites. The Division 's computer resources are organized through the Distributed Information System Program Office that manages the nationwide network of computers. The contract that provides the major computer components for the Water Resources Division 's Distributed information System expires in 1991. Five work groups were organized to collect the information needed to procure a new generation of computer systems for the U. S. Geological Survey, Water Resources Division. Each group was assigned a major Division activity and asked to describe its functional requirements of computer systems for the next decade. The work groups and major activities are: (1) hydrologic information; (2) hydrologic applications; (3) geographic information systems; (4) reports and electronic publishing; and (5) administrative. The work groups identified 42 functions and described their functional requirements for 1988, 1992, and 1997. A few new functions such as Decision Support Systems and Executive Information Systems, were identified, but most are the same as performed today. Although the number of functions will remain about the same, steady growth in the size, complexity, and frequency of many functions is predicted for the next decade. No compensating increase in the Division 's staff is anticipated during this period. To handle the increased workload and perform these functions, new approaches will be developed that use advanced computer technology. The advanced technology is required in a unified, tightly coupled system that will support all functions simultaneously. The new approaches and expanded use of computers will require substantial increases in the quantity and sophistication of the Division 's computer resources. The requirements presented in this report will be used to develop technical specifications that describe the computer resources needed during the 1990's. (USGS)

Open-File Report

Community for Data Integration 2016 annual report

The Community for Data Integration (CDI) represents a dynamic community of practice focused on advancing science data and information management and integration capabilities across the U.S. Geological Survey and the CDI community. This annual report describes the various presentations, activities, and outcomes of the CDI monthly forums, working groups, virtual training series, and other CDI-sponsored events in fiscal year 2016. The report also describes the objectives and accomplishments of the 13 CDI-funded projects in fiscal year 2016.

Open-File Report

AMAP Assessment 2013: Arctic Ocean acidification

This assessment report presents the results of the 2013 AMAP Assessment of Arctic Ocean Acidification (AOA). This is the first such assessment dealing with AOA from an Arctic-wide perspective, and complements several assessments that AMAP has delivered over the past ten years concerning the effects of climate change on Arctic ecosystems and people. The Arctic Monitoring and Assessment Programme (AMAP) is a group working under the Arctic Council. The Arctic Council Ministers have requested AMAP to: - produce integrated assessment reports on the status and trends of the conditions of the Arctic ecosystems; - identify possible causes for the changing conditions; - detect emerging problems, their possible causes, and the potential risk to Arctic ecosystems including indigenous peoples and other Arctic residents; and to - recommend actions required to reduce risks to Arctic ecosystems. This report provides the accessible scientific basis and validation for the statements and recommendations made in the Arctic Ocean Acidification Assessment Summary for Policy-makers that was delivered to Arctic Council Ministers at their meeting in Kiruna, Sweden in May 2011 and the related AMAP State of the Arctic Environment report Arctic Ocean Acidification 2013: An Overview . It includes extensive background data and references to the scientific literature, and details the sources for figures reproduced in the overview report. Whereas the Summary for Policy-makers report contains recommendations that focus mainly on policy-relevant actions concerned with addressing the consequences of AOA, the conclusions and recommendations presented in this report also cover issues of a more scientific nature, such as proposals for filling gaps in knowledge, and recommendations relevant to future monitoring and research work. The AOA assessment was conducted between 2010 and 2013 by an international group of over 60 experts. Lead authors were selected based on an open nomination process coordinated by AMAP. A similar process was used to select international experts who independently reviewed this report. Information contained in this report is fully references and based on first and foremost peer-reviewed and published results of research and monitoring undertaken since 2006. It also incorporates some new (unpublished) information from monitoring and research conducted according to well-established and documented national and international standards of quality assurance/quality control protocols. Care has been taken to ensure that no critical probability statements are based on non-peer-reviewed materials. Access to reliable and up-to-date information is essential for the development of science-based decision-making regarding ongoing changes in the Arctic and their global implications. The AOA assessment summary reports and films have therefore been developed specifically for policy-makers, summarizing the main findings of the AOA assessment. The AOA lead authors have confirmed that both this report and its derivative products accurately and fully reflect their scientific assessment. The AOA reports and the films are freely available from the AMAP Secretariat and on the AMAP website: www.amap.no, and their use for educational purposes is encouraged. AMAP would like to express its appreciation to all experts who have contributed their time, efforts and data, in particular the lead authors who coordinated the production of this report. Thanks are also due to the reviewers who contributed to the AOA peer-review process and provided valuable comments that helped to ensure the quality of the report. A list of the main contributors is included at the start of each chapter. The list is not comprehensive. Specifically, it does not include the many national institutes, laboratories and organizations, and their staff, which have been involved in various countries in AOA-related monitoring and research. Apologies, and no lesser thanks are given to any individuals unintentionally omitted from the list. The support from the Arctic countries and non-Arctic countries implementing research and monitoring in the Arctic is vital to the success of AMAP. The AMAP work is essentially based on ongoing activities within these countries, and the countries that provide the necessary support for most the experts involved in the preparation of the AMAP assessments. In particular, AMAP would like to acknowledge Norway for taking the lead-country role in this assessment and thank Canada, Norway, Sweden, USA and the Nordic Council of Ministers for their financial support to the AOA work. The AMAP Working Group is pleased to present its assessment to the Arctic Council and the international science community. Richard Bellerby (AOA assessment Chair) Russel Shearer (AMAP Chair) Lars-Otto Reiersen (AMAP Executive Secretary) Oslo, May 2013

Report

White-Nose Syndrome Diagnostic Laboratory Network handbook

When responding to a wildlife disease outbreak, managers depend on consistent and clear data to make decisions. However, diagnostic methods for detecting pathogens of wildlife often lack the level of procedural and interpretational standardization that occurs in the investigation of human and domestic animal diseases. This lack of standardization can hamper diagnostic reliability in two ways. First is the inappropriate application of tests to new species or in situations that are outside of the original (in other words, validated) purpose. Second is the use of laboratory-specific modifications or analytical parameters without thorough investigation of how those changes affect result comparisons across institutions or the ability to make broader conclusions about pathogen or disease. White-nose syndrome (WNS) is a disease caused by the fungal pathogen Pseudogymnoascus destructans ( Pd ), which has spread rapidly and is causing population-level declines in some species of North American bats. During the last decade, quantitative polymerase chain reaction (qPCR) has become the most common method of testing for Pd because of qPCR’s speed, accuracy, and simplicity across a wide range of invasive and noninvasive sample types. Its widespread use by many State, Federal, Provincial, and academic institutions has inevitably led to variations in methodology and interpretation among laboratories. The progressive geographic spread of fungus and disease has also led to sampling contexts and strategies that differ from those for which the qPCR assay was originally developed and validated. These factors have resulted in inconsistencies among results tested in different laboratories and, subsequently, confusion for managers and decision makers. To address these challenges, the WNS National Response Team Diagnostic Working Group launched a project congruent with increased calls for the harmonization of wildlife disease diagnostic results, and reporting standards across disparate methodologies and laboratories. Beginning in 2019, interlaboratory testing was done to better understand how variations to Pd qPCR methodology affect diagnostic consistency and to reassess the assay’s fit for purpose in new testing contexts. This information led to expanded conversations within the Diagnostic Working Group related to best practices in Pd qPCR diagnostic testing, the development of common interpretation language for classifying test results, and the incorporation of that language into an updated WNS case definition. This handbook is the resulting product and is intended to help further harmonize Pd qPCR diagnostic testing by establishing recommendations related to voluntary participation in a WNS Diagnostic Laboratory Network, documenting the currently (2022) practiced Pd qPCR methodologies, discussing general best practices for molecular diagnostics and laboratory networks, and elaborating on the epidemiologic and diagnostic basis of the agreed-upon classification language for Pd qPCR results. Through this voluntary, consensus-based approach to diagnostic harmonization, this work aims to improve the confidence of management agencies in reported Pd qPCR results and can serve as an example of national diagnostic coordination for other unregulated wildlife diseases.

Techniques and Methods

The Uniform California Earthquake Rupture Forecast, version 2 (UCERF 2)

California?s 35 million people live among some of the most active earthquake faults in the United States. Public safety demands credible assessments of the earthquake hazard to maintain appropriate building codes for safe construction and earthquake insurance for loss protection. Seismic hazard analysis begins with an earthquake rupture forecast?a model of probabilities that earthquakes of specified magnitudes, locations, and faulting types will occur during a specified time interval. This report describes a new earthquake rupture forecast for California developed by the 2007 Working Group on California Earthquake Probabilities (WGCEP 2007).

Open-File Report

Lifelines and Earthquake Hazards in the Interstate 5 Urban Corridor: Cottage Grove to Woodburn, Oregon

The Interstate 5 highway corridor, stretching from Mexico to Canada, is not only the economic artery of the Pacific Northwest, but is also home to the majority of Oregonians and Washingtonians. Accordingly, most regional utility and transportation systems, such as railroads and electrical transmission lines, have major components in the I-5 corridor. The section of I-5 from Cottage Grove, Oregon, to Blaine, Washington, is rapidly urbanizing, with population growth and economic development centered around the cities of Eugene, Salem, Portland, Olympia, Tacoma, Seattle, Everett, and Bellingham. For the purposes of this map, we refer to this area as the I-5 Urban Corridor. This publicaton consists of two large sheets: A map and a text-and-figures poster.

Open-File Report

Lifelines and earthquake hazards along the Interstate 5 Urban Corridor: Woodburn, Oregon to Centralia, Washington

The Interstate 5 highway corridor, stretching from Mexico to Canada, is not only the economic artery of the Pacific Northwest, but is also home to the majority of Oregonians and Washingtonians. Accordingly, most regional utility and transportation systems, such as railroads and electrical transmission lines, have major components in the I-5 corridor. The section of I-5 from Cottage Grove, Oregon, to Blaine, Washington, is rapidly urbanizing, with population growth and economic development centered around the cities of Eugene, Salem, Portland, Olympia, Tacoma, Seattle, Everett, and Bellingham. For the purposes of this map, we refer to this area as the I-5 Urban Corridor.

Oregon, Washington

Seaside, Oregon tsunami pilot study— Modernization of FEMA flood hazard maps

FEMA Flood Insurance Rate Map (FIRM) guidelines do not currently exist for conducting and incorporating tsunami hazard assessments that reflect the substantial advances in tsunami research achieved in the last two decades; this conclusion is the result of two FEMA-sponsored workshops and the associated Tsunami Focused Study. Therefore, as part of FEMA's Map Modernization Program, a Tsunami Pilot Study was carried out in the Seaside/Gearhart, Oregon, area to develop an improved Probabilistic Tsunami Hazard Assessment (PTHA) methodology and to provide recommendations for improved tsunami hazard assessment guidelines. The Seaside area was chosen because it is typical of many coastal communities in the section of the Pacific Coast from Cape Mendocino to the Strait of Juan de Fuca, and because State Agencies and local stakeholders expressed considerable interest in mapping the tsunami threat to this area. The study was an interagency effort by FEMA, U.S. Geological Survey and the National Oceanic and Atmospheric Administration, in collaboration with the University of Southern California, Middle East Technical University. Portland State University, Horning Geosciences, Northwest Hydraulics Consultants, and the Oregon Department of Geological and Mineral Industries. Draft copies and a briefing on the contents, results and recommendations of this document were provided to FEMA officials before final publication.

Oregon

New magnetic anomaly map of East Antarctica and surrounding regions

More than 500,000 line-km of new airborne and shipborne data, recently acquired by the international community over East Antarctica and surrounding regions, significantly upgrade the Antarctic Digital Magnetic Anomaly Project (ADMAP) compilation and lead to substantial improvements in magnetic anomaly pattern recognition. New data have been matched in one inverse operation by minimizing the data differences for the areas of overlap. The aeromagnetic data show many previously unknown magnetic patterns, lineaments and trends, defining the spatial extent of Ferrar volcanics and plutonic Granite Harbour Intrusives in the Transantarctic Mountains and previously unknown tectonic trends of the East Antarctic craton. Regional aeromagnetic investigations have successfully delineated Early Paleozoic inherited crustal features along the flanks of the West Antarctic Rift System and the southern boundary of the Archean Ruker Terrane in the Prince Charles Mountains. Magnetic records along the East Antarctic continental margin provide new constraints on the breakup of Gondwana.

Open-File Report

The next generation Antarctic digital magnetic anomaly map

Initiated in 1995, the Antarctic Digital Magnetic Anomaly Project (ADMAP) produced the first magnetic anomaly map of the Antarctic region south of 60 o S (Golynsky et al., 2001). This map synthesized over 7.1 million line-kms of survey data available up through 1999 from marine, airborne and Magsat satellite observations. Since the production of the initial map, a large number of new marine and airborne surveys and improved magnetic observations from the Ørsted and CHAMP satellite missions have become available. In addition, an improved core field model for the Antarctic has been developed to better isolate crustal anomalies in these data. The next generation compilation also will likely represent the magnetic survey observations of the region in terms of a high-resolution spherical cap harmonic model. In this paper, we review the progress and problems of developing an improved magnetic anomaly map to facilitate studies of the Antarctic crustal magnetic field

Open-File Report

Implementation plan of the National Cooperative Geologic Mapping Program strategy — Appalachian Piedmont and Blue Ridge Provinces

The National Cooperative Geologic Mapping Program is publishing a strategic plan titled “Renewing the National Cooperative Geologic Mapping Program as the Nation’s Authoritative Source for Modern Geologic Knowledge.” The plan provides a vision, mission, and goals for the program for the years 2020–30: Vision: create an integrated, three-dimensional, digital geologic map of the United States. Mission: characterize, interpret, and disseminate a national geologic framework model of the Earth through geologic mapping. Goal: focus on geological mapping as a core function of the U.S. Geological Survey within the long-term vision of adequately mapping the Nation’s geologic framework in three dimensions.

Alabama, Georgia, Illinois, Indiana, Kentucky, Mar

The MIEM guidelines: Minimum information for reporting of environmental metabarcoding data

Environmental DNA ( eDNA ) and RNA ( eRNA ) metabarcoding has become a popular tool for assessing biodiversity from environmental samples, but inconsistent documentation of methods, data and metadata makes results difficult to reproduce and synthesise. A working group of scientists have collaborated to produce a set of minimum reporting guidelines for the constituent steps of metabarcoding workflows, from the physical layout of laboratories through to data archiving. We emphasise how reporting the suite of data and metadata should adhere to findable, accessible, interoperable and reproducible ( FAIR ) data standards, thereby providing context for evaluating and understanding study results. An overview of the documentation considerations for each workflow step is presented and then summarised in a checklist that can accompany a published study or report. Ensuring workflows are transparent and documented is critical to reproducible research and should allow for more efficient uptake of metabarcoding data into management decision-making.

Metabarcoding and Metagenomics

Technical-information products for a National Volcano Early Warning System

Technical outreach — distinct from general-interest and K-12 educational outreach — for volcanic hazards is aimed at providing usable scientific information about potential or ongoing volcanic activity to public officials, businesses, and individuals in support of their response, preparedness, and mitigation efforts. Within the context of a National Volcano Early Warning System (NVEWS) (Ewert et al., 2005), technical outreach is a critical process, transferring the benefits of enhanced monitoring and hazards research to key constituents who have to initiate actions or make policy decisions to lessen the hazardous impact of volcanic activity. This report discusses recommendations of the Technical-Information Products Working Group convened in 2006 as part of the NVEWS planning process. The basic charge to the Working Group was to identify a web-based, volcanological "product line" for NVEWS to meet the specific hazard-information needs of technical users. Members of the Working Group were: Marianne Guffanti (Chair), USGS, Reston VA Steve Brantley, USGS, Hawaiian Volcano Observatory HI Peter Cervelli, USGS, Alaska Volcano Observatory, Anchorage AK Chris Nye, Division of Geological and Geophysical Surveys and Alaska Volcano Observatory, Fairbanks AK George Serafino, National Oceanic and Atmospheric Administration, Camp Springs MD Lee Siebert, Smithsonian Institution, Washington DC Dina Venezky, USGS, Volcano Hazards Team, Menlo Park CA Lisa Wald, USGS, Earthquake Hazards Program, Golden CO

Open-File Report

Geologic and hydrologic characterization and evaluation of the Basin and Range Province relative to the disposal of high-level radioactive waste: Part I, Introduction and guidelines

The U.S. Geological Survey's program for geologic and hydrologic evaluation of physiographic provinces to identify areas potentially suitable for locating repository sites for disposal of high-level nuclear wastes was announced to the Governors of the eight States in the Basin and Range Province on May 5, 1981. Representatives of Arizona, California, Idaho, New Mexico, Nevada, Oregon, Texas, and Utah, were invited to cooperate with the Federal Government in the evaluation process. Each Governor was requested to nominate an Earth scientist to represent the State in a province working group composed of State and U.S. Geological Survey representatives. This report, Part I of a three-part report, provides the background, introduction and scope of the study. This part also includes a discussion of geologic and hydrologic guidelines that will be used in the evaluation process and illustrates geohydrologic environments and the effect of individual factors in providing multiple natural barriers to radionuclide migration. Part II is a reconnaissance characterization of the geologic and hydrologic factors to be used in the initial screening of the Basin and Range Province. Part III will be the initial evaluation of the Province and will identify regions that appear suitable for further study. The plan for study of the Province includes a stepwise screening process by which successively smaller land units are considered in increasing detail. Each step involves characterization of the geology and hydrology and selection of subunits for more intensive characterization. Selection of subunits for further study is by evaluation of geologic and hydrologic conditions following a set of guidelines. By representation on the Province Working Group, the States participate in a consultation and review role in: (1) Establishing geologic and hydrologic guidelines, and (2) characterizing and evaluating the Province. The States also participate in compilation of geologic and hydrologic data used in characterizing the Province. The current (1983) needs for a high-level radioactive waste repository include: (1) Disposal in a mined repository; (2) retrievability of the waste for as much as 50 years; and (3) confidence of isolation of the waste from the accessible environment. Isolation of the waste needs to be assured using geologic and hydrologic conditions that: (1) Minimize risk of inadvertent future intrusions by man; (2) minimize the possibility of disturbance by processes that would expose the waste or increase its mobility; and (3) provide a system of natural barriers to the migration of waste by ground water. The guidelines adopted by the Province Working Group are designed to provide a standard with which these conditions can be compared. The guidelines can be grouped into four principal categories: (1) Potential host media, (2) ground-water conditions, (3) tectonic conditions, and. (4) occurrence of natural resources. Ideally the host medium constitutes the first natural barrier to migration of radionculides. The host medium ideally should be a rock type that prevents or retards dissolution and transport of radionuclides. Rocks in both the saturated and unsaturated zones may have desirable characteristics for host media. Rocks-other than the host-in the ground-water flow path from the repository ideally should be major barriers to radionuclide migration. Confining beds of low permeability might be present to retard the rate of flow between more permeable beds. Additionally, sorption of radionuclides by materials such as clays and zeolites in the flow path can further retard the flow of radionuclides by several orders of magnitude. Tectonic conditions in an area should not present a probable cause for exhumation or increased mobility of radioactive waste. Natural resources are a factor for consideration because of the problem of future human intrusion and exposure to radioactivity in the quest for minerals, oil, gas, water, and geothermal resources. The ultimate evaluation of the suitability of a geohydrologic environment for developing a mined repository needs to assess all geologic and hydrologic characteristics and their interaction in providing confidence that a geohydrologic environment will effectively isolate radionuclides from human access. Several hypothetical settings with typical geohydrologic conditions in the Basin and Range Province are used to illustrate the effect of multiple barriers in the isolation of radionuclides.

Arizona, California, Idaho, Nevada, New Mexico, Or

PaCTS 1.0: A crowdsourced reporting standard for paleoclimate data

The progress of science is tied to the standardization of measurements, instruments, and data. This is especially true in the Big Data age, where analyzing large data volumes critically hinges on that data being standardized. Accordingly, the lack of community-sanctioned data standards in paleoclimatology has largely precluded the benefits of Big Data advances in the field. Building upon recent efforts to standardize the format and terminology of paleoclimate data, this article describes the Paleoclimate Community reporTing Standard (PaCTS), a crowdsourced reporting standard for such data. PaCTS captures which information should be included when reporting paleoclimate data, with the goal of maximizing the re-use value of paleoclimate datasets, particularly for synthesis work and comparison to climate model simulations. Initiated by the LinkedEarth project, this standard elicitation process involved an international workshop in 2016, various forms of digital community engagement over the next few years, and grassroots working groups. Participants in this process identified important properties across paleoclimate archives, in addition to the reporting of uncertainties and chronologies; they also identified archive-specific properties and distinguished reporting standards for new vs. legacy datasets. This work shows that at least 135 respondents overwhelmingly support a drastic increase in the amount of metadata accompanying paleoclimate datasets. Since such goals are at odds with present practices, we discuss a transparent path towards implementing or revising these recommendations in the near future, using both bottom-up and top-down approaches.

Paleoceanography and Paleoclimatology

Summaries of technical reports, volume XVII

The research results described in the following summaries were submitted by the investigators on October 20, 1983 and cover the 6-month period from April 1, 1983 through September 30, 1983. These reports include both work performed under contracts administered by the Geological Survey and work by members of the Geological Survey. The report summaries are grouped into the four major elements of the National Earthquake Hazards Reduction Program.

Open-File Report