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Size and age distributions of Juvenile Connecticut River American shad above Hadley Falls: Influence on outmigration representation and timing

Age- and size-based habitat use and movement patterns of young-of-year American shad in rivers are not well understood. Adult females reach their natal rivers at different times and ascend the river at different rates, which may lead to variation of hatch dates at a single location. Also, shad are serial spawners, so eggs of the same female may be released at different distances from the river mouth. It has long been hypothesized that juvenile shad emigration is a function of size or age, and not necessarily keyed only to a decrease in water temperature during the fall. We seined three sites in the Connecticut River biweekly to collect pre-migrant shad during river residence (spring to fall). During emigration, samples were also collected weekly at two hydroelectric facilities. Otoliths were removed from ???20% of the fish to obtain age and growth rate information. We found increases in length and age over time until late in the season, after which such increases were mostly insigniftlant. Cohorts collected early in the year as pre-migrants were never sampled as migrants later in the year at the hydroelectric projects. Cohorts collected late in the year as migrants were never collected earlier in the year as pre-migrants. Only during a narrow window of time were fish collected as both pre-migrants and migrants. Fish that were hatched later in the season exhibited higher growth rates than fish that were hatched earlier in the season. Copyright ?? 2008 John Wiley & Sons, Ltd.

River Research and Applications↗

Performance of a prototype surface collector for juvenile salmonids at Bonneville dam's first powerhouse on the Columbia River, Oregon

During April-July 2000, we radio-tagged and released juvenile Chinook salmon (Oncorhynchus tshawytscha) and steelhead (Oncorhynchus mykiss) to evaluate a prototype surface flow bypass at Bonneville Dam on the Columbia River. The mock bypass, called a prototype surface collector (PSC), had six vertical slot entrances that were each 6 m wide and 12 m deep. The PSC was retrofitted to the upstream face of Bonneville Dam's First Powerhouse. Our objectives were to: (1) assess species-specific differences in movement patterns and behaviour of fish within 6 m of the face of the PSC, (2) estimate the efficiency and effectiveness of the PSC and (3) evaluate factors affecting the performance of the PSC. We found that 60-72% of the fish, depending on species, detected within 6 m of the PSC entered it. Of the fish that passed the First Powerhouse at turbines 1-6, 79-83% entered the PSC. Diel period was a significant contributor to PSC performance for all species, and day of year was a significant contributor to PSC performance for subyearling Chinook salmon. The PSC was twice as effective (%fish/%flow) as the spillway, passing 2.5:1 steelhead and subyearling Chinook salmon and 2.4:1 yearling Chinook salmon per unit of water. If fully implemented, the PSC would increase the percentage of fish that pass the First Powerhouse through non-turbine routes from 65-77% (without the PSC) to 76-85% (with the PSC), depending on species. Published in 2008 by John Wiley & Sons, Ltd.

River Research and Applications↗

Composition of the seed bank in drawdown areas of navigation pool 8 of the upper Mississippi river

In an effort to enhance aquatic plant production and habitat diversity on the Upper Mississippi River (UMR), resource managers considered water level reduction as a management tool to increase the area of emergent and submersed aquatic vegetation by natural seed germination. To quantify the availability of seed, we assessed the potential seed bank of selected areas of Navigation Pool 8 of the UMR from substrate samples collected in spring 2000. We tested these samples for viable seed content under four hydrologic conditions: dry, moist, shallow flooded and submerged. Forty-seven species were identified in the seed bank, including 27 obligate wetland, 10 facultative wetland and 7 upland species. Dominant taxa within the seed bank included Sagittaria spp., Lindernia dubia, Zosterella dubia, Cyperus spp., Eragrostis spp. and Leersia oryzoides. Of the four hydrologic treatments, moist substrates had the greatest species diversity and were the most productive, yielding an average density of 1420 seedlings m -2 . Emergent and submersed aquatic species were widely distributed, each type occurring in more than 90% of the samples. Timing of seedling germination varied among species and has implications for scheduling drawdowns to promote establishment of desired species. Seed bank results were correlated with the vegetation response on substrates exposed during a reduction of water levels of Pool 8 during summer 2001. Experimentally determining the composition and viability of seed banks from drawdown areas provides information useful in predicting the types of vegetation that may develop on exposed substrates. Further, these findings provide resource managers a better understanding of the potential for achieving desired vegetation response through water level reductions.

River Research and Applications↗

Erosion properties of cohesive sediments in the Colorado River in Grand Canyon

Cohesive sediment deposits characterized by a high fraction of mud (silt plus clay) significantly affect the morphology and ecosystem of rivers. Potentially cohesive sediment samples were collected from deposits in the Colorado River in Marble and Grand Canyons. The erosion velocities of these samples were measured in a laboratory flume under varying boundary shear stresses. The non-dimensional boundary shear stress at which erosion commenced showed a systematic deviation from that of non-cohesive sediments at mud fractions greater than 0.2. An empirical relation for the boundary shear stress threshold of erosion as a function of mud fraction was proposed. The mass erosion rate was modelled using the Ariathurai-Partheniades equation. The erosion rate parameter of this equation was found to be a strong function of mud fraction. Under similar boundary shear stress and sediment supply conditions in the Colorado River, cohesive lateral eddy deposits formed of mud fractions in excess of 0.2 will erode less rapidly than non-cohesive deposits. Copyright ?? 2008 John Wiley & Sons, Ltd.

River Research and Applications↗

Effects of residence time on summer nitrate uptake in Mississippi River flow-regulated backwaters

Nitrate uptake may be improved in regulated floodplain rivers by increasing hydrological connectivity to backwaters. We examined summer nitrate uptake in a series of morphologically similar backwaters on the Upper Mississippi River receiving flow-regulated nitrate loads via gated culverts. Flows into individual backwaters were held constant over a summer period but varied in the summers of 2003 and 2004 to provide a range of hydraulic loads and residence times (??). The objectives were to determine optimum loading and ?? for maximum summer uptake. Higher flow adjustment led to increased loading but lower ?? and contact time for uptake. For highest flows, ?? was less than 1 day resulting in lower uptake rates (Unet, < 300 mg m-2 day-1), low uptake efficiency (U% < 20%) and a long uptake length (Snet > 4000 m). For low flows, ?? was greater than 5 days and U% approached 100%, but Unet was 200 mg m-2 day-1. Snet was < half the length of the backwaters under these conditions indicating that most of the load was assimilated in the upper reaches, leading to limited delivery to lower portions. Unet was maximal (384-629 mg m-2 day-1) for intermediate flows and ?? ranging between 1 and 1.5 days. Longer Snet (2000-4000 m) and lower U% (20-40%) reflected limitation of uptake in upper reaches by contact time, leading to transport to lower reaches for additional uptake. Uptake by ???10 000 ha of reconnected backwaters along the Upper Mississippi River (13% of the total backwater surface area) at a Unet of ???630 mg m-2 day-1 would be the equivalent of ???40% of the summer nitrate load (155 mg day-1) discharged from Lock and Dam 4. These results indicate that backwater nitrate uptake can play an important role in reducing nitrate loading to the Gulf of Mexico. Copyright ?? 2008 John Wiley & Sons, Ltd.

River Research and Applications↗

Evaluation of irrigation canal networks to assess stream connectivity in a watershed

We used digital data sets, aerial photos and direct field observations in a geographical information system to evaluate the stream habitat in an Idaho watershed affected by agriculture. We found that the scale of the digital data sets affected the outcome of the assessment due to the presence of dewatered stream channels in the drainage. We analysed the spatial configuration of irrigation canals in the watershed to determine if the contemporary stream network connectivity could be attributed to human- caused or to natural hydrological processes. Many irrigation canals were significantly longer than would have been expected if these canals were constructed to capture water from the closest portion of the abandoned stream channels. Our findings provide evidence that some of these tributary streams had reaches that were likely ephemeral or intermittent at the time of canal construction. Our approach for assessing stream and irrigation network connectivity in pastoral and agricultural lands should aid managers in prioritizing the effective and appropriate reconnection efforts. Published in 2008 by John Wiley & Sons Ltd. ?? 2008 John Wiley & Sons, Ltd.

River Research and Applications↗

Changes in fish communities following recolonization of the Cedar river, Wa, USA by Pacific salmon after 103 years of local extirpation

Migration barriers are a major reason for species loss and population decline of freshwater organisms. Significant efforts have been made to remove or provide passage around these barriers; however, our understanding of the ecological effects of these efforts is minimal. Installation of a fish passage facility at the Landsburg Dam, WA, USA provided migratory fish access to habitat from which they had been excluded for over 100 years. Relying on voluntary recruitment, we examined the effectiveness of this facility in restoring coho (Oncorhynchus kisutch) salmon populations above the diversion, and whether reintroduction of native anadromous species affected the distribution and abundance of resident trout (O. mykiss and O. clarki). Before the ladder, late summer total salmonid (trout only) density increased with distance from the dam. This pattern was reversed after the ladder was opened, as total salmonid density (salmon {thorn} trout) approximately doubled in the three reaches closest to the dam. These changes were primarily due to the addition of coho, but small trout density also increased in lower reaches and decreased in upper reaches. A nearby source population, dispersal by adults and juveniles, low density of resident trout and high quality habitat above the barrier likely promoted rapid colonization of targeted species. Our results suggest that barrier removal creates an opportunity for migratory species to re-establish populations leading to range expansion and potentially to increased population size. ?? 2008 John Wiley & Sons, Ltd.

River Research and Applications↗

Effects of variation in streamflow and channel structure on smallmouth bass habitat in an alluvial stream

We evaluated the effects of streamflow-related changes in channel shape and morphology on the quality, quantity, availability and spatial distribution of young-of-year and adult smallmouth bass Micropterus dolomieu habitat in an alluvial stream, the Baron Fork of the Illinois River, Oklahoma. We developed Habitat Suitability Criteria (HSC) for young-of-year and adult smallmouth bass to assess changes in available smallmouth bass habitat between years, and compare predicted smallmouth bass Weighted Usable Area (WUA) with observed WUA measured the following year. Following flood events between 1999 and 2000, including a record flood, changes in transect cross-sectional area ranged from 62.5% to 93.5% and channel mesohabitat overlap ranged from 29.5% to 67.0% in study three study reaches. Using Physical HABitat SIMulation (PHABSIM) system analysis, we found that both young-of-year and adult smallmouth bass habitat were differentially affected by intra- and inter-annual streamflow fluctuations. Maximum WUA for young-of-year and adults occurred at streamflows of 1.8 and 2.3m 3 s -1 , respectively, and WUA declined sharply for both groups at lower streamflows. For most microhabitat variables, habitat availability was similar between years. Habitat suitability criteria developed in 1999 corresponded well with observed fish locations in 2000 for adult smallmouth bass but not for young-of-year fish. Our findings suggest that annual variation in habitat availability affects the predictive ability of habitat models for young-of-year smallmouth bass more than for adult smallmouth bass. Furthermore, our results showed that despite the dynamic nature of the gravel-dominated, alluvial Baron Fork, HSC for smallmouth bass were consistent and transferable between years.

River Research and Applications↗

A simplified water temperature model for the Colorado River below Glen Canyon Dam

Glen Canyon Dam, located on the Colorado River in northern Arizona, has affected the physical, biological and cultural resources of the river downstream in Grand Canyon. One of the impacts to the downstream physical environment that has important implications for the aquatic ecosystem is the transformation of the thermal regime from highly variable seasonally to relatively constant year-round, owing to hypolimnetic releases from the upstream reservoir, Lake Powell. Because of the perceived impacts on the downstream aquatic ecosystem and native fish communities, the Glen Canyon Dam Adaptive Management Program has considered modifications to flow releases and release temperatures designed to increase downstream temperatures. Here, we present a new model of monthly average water temperatures below Glen Canyon Dam designed for first-order, relatively simple evaluation of various alternative dam operations. The model is based on a simplified heat-exchange equation, and model parameters are estimated empirically. The model predicts monthly average temperatures at locations up to 421 km downstream from the dam with average absolute errors less than 0.58C for the dataset considered. The modelling approach used here may also prove useful for other systems, particularly below large dams where release temperatures are substantially out of equilibrium with meteorological conditions. We also present some examples of how the model can be used to evaluate scenarios for the operation of Glen Canyon Dam.

River Research and Applications↗

Predicting the natural flow regime: Models for assessing hydrological alteration in streams

Understanding the extent to which natural streamflow characteristics have been altered is an important consideration for ecological assessments of streams. Assessing hydrologic condition requires that we quantify the attributes of the flow regime that would be expected in the absence of anthropogenic modifications. The objective of this study was to evaluate whether selected streamflow characteristics could be predicted at regional and national scales using geospatial data. Long-term, gaged river basins distributed throughout the contiguous US that had streamflow characteristics representing least disturbed or near pristine conditions were identified. Thirteen metrics of the magnitude, frequency, duration, timing and rate of change of streamflow were calculated using a 20-50 year period of record for each site. We used random forests (RF), a robust statistical modelling approach, to develop models that predicted the value for each streamflow metric using natural watershed characteristics. We compared the performance (i.e. bias and precision) of national- and regional-scale predictive models to that of models based on landscape classifications, including major river basins, ecoregions and hydrologic landscape regions (HLR). For all hydrologic metrics, landscape stratification models produced estimates that were less biased and more precise than a null model that accounted for no natural variability. Predictive models at the national and regional scale performed equally well, and substantially improved predictions of all hydrologic metrics relative to landscape stratification models. Prediction error rates ranged from 15 to 40%, but were 25% for most metrics. We selected three gaged, non-reference sites to illustrate how predictive models could be used to assess hydrologic condition. These examples show how the models accurately estimate predisturbance conditions and are sensitive to changes in streamflow variability associated with long-term land-use change. We also demonstrate how the models can be applied to predict expected natural flow characteristics at ungaged sites. ?? 2009 John Wiley & Sons, Ltd.

River Research and Applications↗

Quantifying the behavioral response of spawning chum salmon to elevated discharges from Bonneville Dam, Columbia River, USA

Chum salmon Oncorhynchus keta that spawn in main-stem habitats below Bonneville Dam on the Columbia River, USA, are periodically subjected to elevated discharges that may alter spawning behaviour. We investigated behavioural responses of spawning chum salmon to increased water velocities associated with experimental increases in tailwater elevation using acoustic telemetry and a dual-frequency identification sonar. Chum salmon primarily remained near their redds at base tailwater elevations (3.5 m above mean sea level), but displayed different movement and behavioural responses as elevations were increased to either 4.1 or 4.7m for 8-h periods. When velocities remained suitable (<0.8m s -1 ) during elevated-tailwater tests, female chum salmon remained near their redds but exhibited reduced digging activity as water velocities increased. However, when velocities exceeded 0.8m s -1 , the females that remained on their redds exhibited increased swimming activity and digging virtually ceased. Female and male chum salmon that left their redds when velocities became unsuitable moved mean distances ranging from 32 to 58 m to occupy suitable velocities, but returned to their redds after tailwaters returned to base levels. Spawning events (i.e. egg deposition) were observed for five of nine pairs of chum salmon following tests indicating any disruptions to normal behaviour caused by elevated tailwaters were likely temporary. We believe a chum salmon's decision to either remain on, or leave, its redd during periods of unsuitably high water velocities reflects time invested in the redd and the associated energetic costs it is willing to incur. ?? 2009 John Wiley & Sons, Ltd.

River Research and Applications↗

Fish community structure in natural and engineered habitats in the Kansas River

We investigated fish assemblage structure in engineered (rip‐rap) and natural habitats (log jams and mud banks) in the Kansas River USA to determine if natural structures had higher abundance and diversity of fishes at a local spatial scale. A total of 439 randomly selected sites were boat electrofished from May to August 2005 and 2006. Mean species diversity and richness were significantly higher in rip‐rap than log jams and mud banks. Mean relative abundance (CPUE; number of fish collected per hour electrofishing) of six of the 15 most common fishes (>1% of total catch) were most abundant in rip‐rap, two were most abundant in log jams, and none in mud banks. Rip‐rap had the highest relative abundance of fluvial specialist and macrohabitat generalists, whereas mean CPUE of fluvial dependents was highest in log jams. Although a discriminant function analysis indicated that nine size classes (eight species) discriminated among three habitat types, the high misclassification rate (38%) suggested a high degree of fish assemblage overlap among the habitats. Although previous work has suggested that engineered structures (rip‐rap) and urbanization are linked to reduced biotic diversity or reduced growth of fish species, our results suggest that at a local scale rip‐rap may not have the same negative impacts on fish assemblages.

Kansas↗

Effects of hydrologic infrastructure on flow regimes of California's Central Valley rivers: Implications for fish populations

Alteration of natural flow regimes is generally acknowledged to have negative effects on native biota; however, methods for defining ecologically appropriate flow regimes in managed river systems are only beginning to be developed. Understanding how past and present water management has affected rivers is an important part of developing such tools. In this paper, we evaluate how existing hydrologic infrastructure and management affect streamflow characteristics of rivers in the Central Valley, California and discuss those characteristics in the context of habitat requirements of native and alien fishes. We evaluated the effects of water management by comparing observed discharges with estimated discharges assuming no water management ("full natural runoff"). Rivers in the Sacramento River drainage were characterized by reduced winter&ndash;spring discharges and augmented discharges in other months. Rivers in the San Joaquin River drainage were characterized by reduced discharges in all months but particularly in winter and spring. Two largely unaltered streams had hydrographs similar to those based on full natural runoff of the regulated rivers. The reduced discharges in the San Joaquin River drainage streams are favourable for spawning of many alien species, which is consistent with observed patterns of fish distribution and abundance in the Central Valley. However, other factors, such as water temperature, are also important to the relative success of native and alien resident fishes. As water management changes in response to climate change and societal demands, interdisciplinary programs of research and monitoring will be essential for anticipating effects on fishes and to avoid unanticipated ecological outcomes.

California↗

Determining the effects of dams on subdaily variation in river flows at a whole-basin scale

River regulation can alter the frequency and magnitude of subdaily flow variations causing major impacts on ecological structure and function. We developed an approach to quantify subdaily flow variation for multiple sites across a large watershed to assess the potential impacts of different dam operations (flood control, run-of-river hydropower and peaking hydropower) on natural communities. We used hourly flow data over a 9-year period from 30 stream gages throughout the Connecticut River basin to calculate four metrics of subdaily flow variation and to compare sites downstream of dams with unregulated sites. Our objectives were to (1) determine the temporal scale of data needed to characterize subdaily variability; (2) compare the frequency of days with high subdaily flow variation downstream of dams and unregulated sites; (3) analyse the magnitude of subdaily variation at all sites and (4) identify individual sites that had subdaily variation significantly higher than unregulated locations. We found that estimates of flow variability based on daily mean flow data were not sufficient to characterize subdaily flow patterns. Alteration of subdaily flows was evident in the number of days natural ranges of variability were exceeded, rather than in the magnitude of subdaily variation, suggesting that all rivers may exhibit highly variable subdaily flows, but altered rivers exhibit this variability more frequently. Peaking hydropower facilities had the most highly altered subdaily flows; however, we observed significantly altered ranges of subdaily variability downstream of some flood-control and run-of-river hydropower dams. Our analysis can be used to identify situations where dam operating procedures could be modified to reduce the level of hydrologic alteration. ?? 2009 John Wiley & Sons, Ltd.

River Research and Applications↗

Urbanization in a great plains river: Effects on fishes and food webs

Spatial variation of habitat and food web structure of the fish community was investigated at three reaches in the Kansas River, USA to determine if ??13C variability and ??15N values differ longitudinally and are related to urbanization and instream habitat. Fish and macroinvertebrates were collected at three river reaches in the Kansas River classified as the less urbanized reach (no urban in riparian zone; 40% grass islands and sand bars, braided channel), intermediate (14% riparian zone as urban; 22% grass islands and sand bars) and urbanized (59% of riparian zone as urban; 6% grass islands and sand bars, highly channelized) reaches in June 2006. The less urbanized reach had higher variability in ??13C than the intermediate and urbanized reaches, suggesting fish from these reaches utilized a variety of carbon sources. The ??15N also indicated that omnivorous and detritivorous fish species tended to consume prey at higher trophic levels in the less urbanized reach. Channelization and reduction of habitat related to urbanization may be linked to homogenization of instream habitat, which was related to river food webs. ?? 2009.

River Research and Applications↗

Reference condition approach to restoration planning

Ecosystem restoration planning requires quantitative rigor to evaluate alternatives, define end states, report progress and perform environmental benefits analysis (EBA). Unfortunately, existing planning frameworks are, at best, semi-quantitative. In this paper, we: (1) describe a quantitative restoration planning approach based on a comprehensive, but simple mathematical framework that can be used to effectively apply knowledge and evaluate alternatives, (2) use the approach to derive a simple but precisely defined lexicon based on the reference condition concept and allied terms and (3) illustrate the approach with an example from the Upper Mississippi River System (UMRS) using hydrologic indicators. The approach supports the development of a scaleable restoration strategy that, in theory, can be expanded to ecosystem characteristics such as hydraulics, geomorphology, habitat and biodiversity. We identify three reference condition types, best achievable condition (A BAC), measured magnitude (MMi which can be determined at one or many times and places) and desired future condition (ADFC) that, when used with the mathematical framework, provide a complete system of accounts useful for goal-oriented system-level management and restoration. Published in 2010 by John Wiley & Sons, Ltd.

River Research and Applications↗

Evaluation of single and two-stage adaptive sampling designs for estimation of density and abundance of freshwater mussels in a large river

Reliable estimates of abundance are needed to assess consequences of proposed habitat restoration and enhancement projects on freshwater mussels in the Upper Mississippi River (UMR). Although there is general guidance on sampling techniques for population assessment of freshwater mussels, the actual performance of sampling designs can depend critically on the population density and spatial distribution at the project site. To evaluate various sampling designs, we simulated sampling of populations, which varied in density and degree of spatial clustering. Because of logistics and costs of large river sampling and spatial clustering of freshwater mussels, we focused on adaptive and non-adaptive versions of single and two-stage sampling. The candidate designs performed similarly in terms of precision (CV) and probability of species detection for fixed sample size. Both CV and species detection were determined largely by density, spatial distribution and sample size. However, designs did differ in the rate that occupied quadrats were encountered. Occupied units had a higher probability of selection using adaptive designs than conventional designs. We used two measures of cost: sample size (i.e. number of quadrats) and distance travelled between the quadrats. Adaptive and two-stage designs tended to reduce distance between sampling units, and thus performed better when distance travelled was considered. Based on the comparisons, we provide general recommendations on the sampling designs for the freshwater mussels in the UMR, and presumably other large rivers.

River Research and Applications↗

Beaver assisted river valley formation

We examined how beaver dams affect key ecosystem processes, including pattern and process of sediment deposition, the composition and spatial pattern of vegetation, and nutrient loading and processing. We provide new evidence for the formation of heterogeneous beaver meadows on riverine system floodplains and terraces where dynamic flows are capable of breaching in‐channel beaver dams. Our data show a 1.7‐m high beaver dam triggered overbank flooding that drowned vegetation in areas deeply flooded, deposited nutrient‐rich sediment in a spatially heterogeneous pattern on the floodplain and terrace, and scoured soils in other areas. The site quickly de‐watered following the dam breach by high stream flows, protecting the deposited sediment from future re‐mobilization by overbank floods. Bare sediment either exposed by scouring or deposited by the beaver flood was quickly colonized by a spatially heterogeneous plant community, forming a beaver meadow. Many willow and some aspen seedlings established in the more heavily disturbed areas, suggesting the site may succeed to a willow carr plant community suitable for future beaver re‐occupation. We expand existing theory beyond the beaver pond to include terraces within valleys. This more fully explains how beavers can help drive the formation of alluvial valleys and their complex vegetation patterns as was first postulated by Ruedemann and Schoonmaker in 1938.

Colorado↗