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What are plants doing and when? Using plant phenology to facilitate sustainable natural resources management

Climate change models for the northern Rocky Mountains predict changes in temperature and water availability that in turn will alter vegetation. Changes include timing of plant life-history events, or phenology, such as green-up, flowering and senescence, and shifts in species composition. Moreover, climate changes may favor different species, such as nonnative, annual grasses over native species. Changes in vegetation could make forage for ungulates, sage-grouse, and livestock available earlier in the growing season, but shifts in species composition and phenology may also result in earlier senescence (die-off or dormancy) and reduced overall forage production.

Wyoming

Fungal endophytes: diversity and functional roles

All plants in natural ecosystems appear to be symbiotic with fungal endophytes. This highly diverse group of fungi can have profound impacts on plant communities through increasing fitness by conferring abiotic and biotic stress tolerance, increasing biomass and decreasing water consumption, or decreasing fitness by altering resource allocation. Despite more than 100 yr of research resulting in thousands of journal articles, the ecological significance of these fungi remains poorly characterized. Historically, two endophytic groups (clavicipitaceous (C) and nonclavicipitaceous (NC)) have been discriminated based on phylogeny and life history traits. Here, we show that NC-endophytes represent three distinct functional groups based on host colonization and transmission, in planta biodiversity and fitness benefits conferred to hosts. Using this framework, we contrast the life histories, interactions with hosts and potential roles in plant ecophysiology of C- and NC-endophytes, and highlight several key questions for future work in endophyte biology.

New Phytologist

Elemental composition and potential toxicity of the riverine macrophyte Podostemum ceratophyllum Michx. reflects land use in eastern North America

Land use influences surface water quality, often alleviating stoichiometric constraints on primary production and altering biogeochemical cycling. However, land use effects on nutrient content and potential trace metal accumulation in aquatic plants remain unclear, and high concentrations of metals and altered nutrient ratios could impact the health of herbivores and detritivores. We tested for land use effects on nutrient and trace metal accumulation in a widespread riverine macrophyte, Podostemum ceratophyllum , collected from 91 locations from Georgia to Maine, USA in 2014–2016. We quantified carbon (C), nitrogen (N), phosphorus (P), their molar and mass ratios, N and C stable isotopes, and 17 additional elements in dried plants collected from each location to estimate relationships between plant tissue content and watershed land use, which we quantified as agriculture, forest, and development. Decreasing forest cover was correlated with increasing δ 15 N, Mg, Mn, and P in Podostemum tissue. Increasing urban development was correlated with increasing δ 15 N, Mg and P, while increasing agriculture was correlated with a decrease in C: P and the concentrations of multiple metals, along with increases in P, Mg and δ 15 N. Decreases in ratios of N: P and C:P with increasing agriculture and urban development in the watershed indicate more rapid P storage relative to C and N in plant tissue, and increased resource quality of the plant to consumers in these watersheds. We also observed potentially toxic dietary concentrations of some trace metals (B, Cd, Tl, Zn) in plant tissue which could be related to the plant's natural herbivory defense system or to land use. We conclude that land use influences the elemental composition of P. ceratophyllum , and potentially the quality and toxicity of the plant to herbivores and detritivores in eastern North American rivers.

Science of the Total Environment

Modeling the impact of invasive species litter on conditions affecting its spread and potential regime shift

Many introduced plants pose invasion risks globally and threaten the biodiversity of native ecosystems. Such non-native plants can become invasive when they have advantages over native plants, such as having fewer natural enemies. Invasive plants often have the ability to alter ecosystem properties after they have become established, which can make it difficult to eliminate the invasive. In principle, this can cause a regime shift that may not be reversed through intense control efforts that increase mortality and reduce growth of the invasive species. Here we use spatially explicit agent-based modeling to simulate the invasion of an introduced tree species into a habitat occupied by a native species. The model describes an invasive tree with fast growth and high seed production and, in addition, produces litter that has a suppressive effect on native seedlings. These are properties, for example, shared by the invasive Melaleuca quinquenervia in southern Florida habitats. We use simulation modeling to test the following logical hypotheses: Partial suppression of native tree seedlings by the invasive tree's litter (1) will accelerate the spread of the invasive tree into native vegetation, (2) will impede efforts to control invasive spread through biocontrol, and (3) can cause a regime shift that is not reversed even if the biocontrol lowers invasive growth and reproduction to levels substantially lower than those of the native species. Additionally, (4) the earlier in the invasion biocontrol is introduced, the more effective it will be in reversing the invasion. The simulations support all four hypotheses. While these results highlight the potential for biocontrol of invasive tree species, our findings also suggest that successful elimination of positive litter feedbacks and invasive spread may critically depend on the timing of control efforts within the invasion process.

Ecological Modelling

More than 400 million years of evolution and some plants still can't make it on their own: Plant stress tolerance via fungal symbiosis

All plants in natural ecosystems are thought to be symbiotic with mycorrhizal and/or endophytic fungi. Collectively, these fungi express different symbiotic lifestyles ranging from parasitism to mutualism. Analysis of Colletotrichum species indicates that individual isolates can express either parasitic or mutualistic lifestyles depending on the host genotype colonized. The endophyte colonization pattern and lifestyle expression indicate that plants can be discerned as either disease, non-disease, or non-hosts. Fitness benefits conferred by fungi expressing mutualistic lifestyles include biotic and abiotic stress tolerance, growth enhancement, and increased reproductive success. Analysis of plant-endophyte associations in high stress habitats revealed that at least some fungal endophytes confer habitat-specific stress tolerance to host plants. Without the habitat-adapted fungal endophytes, the plants are unable to survive in their native habitats. Moreover, the endophytes have a broad host range encompassing both monocots and eudicots, and confer habitat-specific stress tolerance to both plant groups. ?? The Author [2008]. Published by Oxford University Press [on behalf of the Society for Experimental Biology]. All rights reserved.

Conference Paper

Soil, plant, and terrain effects on natural perchlorate distribution in a desert landscape

Perchlorate (ClO 4 − ) is a contaminant that occurs naturally throughout the world, but little is known about its distribution and interactions in terrestrial ecosystems. The objectives of this Amargosa Desert, Nevada study were to determine (i) the local-scale distribution of shallow-soil (0–30 cm) ClO 4 − with respect to shrub proximity (far and near) in three geomorphic settings (shoulder slope, footslope, and valley floor); (ii) the importance of soil, plant, and terrain variables on the hillslope-distribution of shallow-soil and creosote bush [ Larrea tridentata (Sessé & Moc. ex DC.) Coville] ClO 4 − ; and (iii) atmospheric (wet plus dry, including dust) deposition of ClO 4 − in relation to soil and plant reservoirs and cycling. Soil ClO 4 − ranged from 0.3 to 5.0 μg kg −1 . Within settings, valley floor ClO 4 − was 17× less near shrubs due in part to enhanced leaching, whereas shoulder and footslope values were ∼2× greater near shrubs. Hillslope regression models (soil, R 2 = 0.42; leaf, R 2 = 0.74) identified topographic and soil effects on ClO 4 − deposition, transport, and cycling. Selective plant uptake, bioaccumulation, and soil enrichment were evidenced by leaf ClO 4 − concentrations and Cl − /ClO 4 − molar ratios that were ∼8000× greater and 40× less, respectively, than soil values. Atmospheric deposition ClO 4 − flux was 343 mg ha −1 yr −1 , ∼10× that for published southwestern wet-deposition fluxes. Creosote bush canopy ClO 4 − (1310 mg ha−1) was identified as a previously unrecognized but important and active reservoir. Nitrate δ 18 O analyses of atmospheric deposition and soil supported the leaf-cycled–ClO 4 − input hypothesis. This study provides basic data on ClO 4 − distribution and cycling that are pertinent to the assessment of environmental impacts in desert ecosystems and broadly transferable to anthropogenically contaminated systems.

Nevada

Status and limiting factors of three rare plant species in the coastal lowlands and mid-elevation woodlands of Hawai`i Volcanoes National Park

Two endangered plant species ( Portulaca sclerocarpa , `ihi mākole, and Sesbania tomentosa , `ōhai) and a species of concern ( Bobea timonioides , `ahakea) native to the coastal lowlands and dry mid-elevation woodlands of Hawai`i Volcanoes National Park were studied for more than two years to determine their stand structure, short-term mortality rates, patterns of reproductive phenology, success of fruit production, seed germination rates in the greenhouse, presence of soil seed bank, and survival of both natural and planted seedlings. The role of rodents as fruit and seed predators was evaluated using exclosures and seed offerings in open and closed stations or cages. Rodents were excluded from randomly selected plants of P. sclerocarpa and from branches of S. tomentosa, and flower and fruit production were compared to that of adjacent unprotected plants. Tagged S. tomentosa fruit were also monitored monthly to detect rodent predation.

Hawai'i

Nitrogen-limitation and invasive sweetclover impacts vary between two Great Plains plant communities

Yellow sweetclover is an exotic herbaceous legume common in the Great Plains of the US. Although woody legumes have been shown to affect ecosystem processes through nitrogen (N) fixation (i.e., they can be considered "transformers" sensu Richardson et al. (2000)), the same has not been shown for short-lived herbaceous species. The objectives of this study were to (1) quantify the effects of yellow sweetclover on N mineralization and nitrification and (2) assess the effects of N fertilization on two plant communities, badlands sparse vegetation and western wheatgrass prairie. We used in situ (in wheatgrass prairie) and laboratory incubations (for both plant communities) to assess N dynamics at sites with high and low sweetclover cover in the two plant communities. We found that both N mineralization and nitrification were higher in the high sweetclover plots in the sparse plant community, but not in the wheatgrass prairie. To assess fertilization effects and determine if nutrients or water were limiting at our sites, we conducted a field experiment with five resource addition treatments, (1) N, (2) N + water, (3) water, (4) phosphorus, and (5) no addition. Water was limiting in the wheatgrass prairie but contrary to expectation, N was not. In contrast, N was limiting in the sparse community, where a fertilization effect was seen in exotic forbs, especially the toxic invader Halogeton glomeratus . Our results emphasize the contingent nature of plant invasion in which effects are largely dependent on attributes of the recipient vegetation.

Great Plains

Why are non-native plants successful? Consistently fast economic traits and novel origin jointly explain abundance across US ecoregions

Are non-native plants abundant because they are non-native, and have advantages over native plants, or because they possess ‘fast’ resource strategies, and have advantages in disturbed environments? This question is central to invasion biology but remains unanswered. We quantified the relative importance of resource strategy and biogeographic origin in 69 441 plots across the conterminous United States containing 11 280 plant species. Non-native species had faster economic traits than native species in most plant communities (77%, 86% and 82% of plots for leaf nitrogen concentration, specific leaf area, and leaf dry matter content). Non-native species also had distinct patterns of abundance, but these were not explained by their fast traits. Compared with functionally similar native species, non-native species were (1) more abundant in plains and deserts, indicating the importance of biogeographic origin, and less abundant in forested ecoregions, (2) were more abundant where co-occurring species had fast traits, for example due to disturbance, and (3) showed weaker signals of local environmental filtering. These results clarify the nature of plant invasion: Although non-native plants have consistently fast economic traits, other novel characteristics and processes likely explain their abundance and, therefore, impacts.

conterminous United States

Fire, climate and changing forests

A changing climate implies potential transformations in plant demography, communities, and disturbances such as wildfire and insect outbreaks. How do these dynamics play out in terrestrial ecosystems across scales of space and time? “Vegetation type conversion” (VTC) is a term used to describe abrupt and long-lasting changes in vegetation structure and composition due to various kinds of perturbations. For example, it has long been observed that fire-adapted ecosystems such as the California chaparral shrublands are readily replaced by non-native annual grasses when humans increase fire frequency. Similar effects are being observed in Sonoran Desert plant communities, where invasion by non-native buffelgrass (Cenchrus ciliare) exposes a fire-sensitive plant community to high-intensity fires, which are lethal to the long-lived iconic Sonoran flora such as Saguaro cactus (Carnegiea gigantea). While type conversions following severe disturbance have been observed for some time, the mechanisms that underlay such changes are only recently coming to light. Threshold behavior is of particular concern: as various climate indices pass critical values, some ecosystems may be reaching points of no return where recovery to the earlier state is no longer possible. A recent publication in the Proceedings of the National Academy of Sciences, U.S., has now revealed that increased fire severity impairs post-fire forest regeneration, setting the stage for potential large-scale type conversion of western conifer forests.

Nature Plants

Climate change perils for dioecious plant species

Climate change, particularly increased aridity, poses a significant threat to plants and the biotic communities they support. Dioecious species may be especially vulnerable to climate change given that they often exhibit spatial segregation of the sexes, reinforced by physiological and morphological specialization of each sex to different microhabitats. In dimorphic species, the overexpression of a trait by one gender versus the other may become suppressed in future climates. Data suggest that males will generally be less sensitive to increased aridity than co-occurring females and, consequently, extreme male-biased sex ratios are possible in a significant number of populations. The effects of male-biased sex ratios are likely to cascade to dependent community members, especially those that are specialized on one sex.

Nature Plants

Potential vulnerability of 348 herbaceous species to atmospheric deposition of nitrogen and sulfur in the United States

Atmospheric nitrogen and sulfur pollution increased over much of the United States during the twentieth century from fossil fuel combustion and industrial agriculture. Despite recent declines, nitrogen and sulfur deposition continue to affect many plant communities in the United States, although which species are at risk remains uncertain. We used species composition data from >14,000 survey sites across the contiguous United States to evaluate the association between nitrogen and sulfur deposition and the probability of occurrence for 348 herbaceous species. We found that the probability of occurrence for 70% of species was negatively associated with nitrogen or sulfur deposition somewhere in the contiguous United States (56% for N, 51% for S). Of the species, 15% and 51% potentially decreased at all nitrogen and sulfur deposition rates, respectively, suggesting thresholds below the minimum deposition they receive. Although more species potentially increased than decreased with nitrogen deposition, increasers tended to be introduced and decreasers tended to be higher-value native species. More vulnerable species tended to be shorter with lower tissue nitrogen and magnesium. These relationships constitute predictive equations to estimate critical loads. These results demonstrate that many herbaceous species may be at risk from atmospheric deposition and can inform improvements to air quality policies in the United States and globally.

Contiguous United States

Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina)

Currents are unique drivers of oceanic phylogeography and thus determine the distribution of marine coastal species, along with past glaciations and sea-level changes. Here we reconstruct the worldwide colonization history of eelgrass ( Zostera marina L.), the most widely distributed marine flowering plant or seagrass from its origin in the Northwest Pacific, based on nuclear and chloroplast genomes. We identified two divergent Pacific clades with evidence for admixture along the East Pacific coast. Two west-to-east (trans-Pacific) colonization events support the key role of the North Pacific Current. Time-calibrated nuclear and chloroplast phylogenies yielded concordant estimates of the arrival of Z. marina in the Atlantic through the Canadian Arctic, suggesting that eelgrass-based ecosystems, hotspots of biodiversity and carbon sequestration, have only been present there for ~243 ky (thousand years). Mediterranean populations were founded ~44 kya, while extant distributions along western and eastern Atlantic shores were founded at the end of the Last Glacial Maximum (~19 kya), with at least one major refuge being the North Carolina region. The recent colonization and five- to sevenfold lower genomic diversity of the Atlantic compared to the Pacific populations raises concern and opportunity about how Atlantic eelgrass might respond to rapidly warming coastal oceans.

Nature Plants

Predicting surf zone injuries along the Delaware coast using a Bayesian network

Personnel at Beebe Healthcare in Lewes, Delaware, collected surf zone injury (SZI) data for eight summer seasons from 2010 through 2017. Data include, but are not limited to, time of injury, gender, age, and activity. More than 2000 SZI events, including 196 spinal injuries and 6 fatalities, occurred at the five most populated beaches along the 25 miles of Atlantic-fronting coast. SZI are predominantly wave related incidents associated with wading (50.1%), body surfing (18.4%), and body boarding (13.3%). The episodic nature of SZI indicate the importance of linking the environmental conditions and human behavior in the surf zone to predict days with high injury rates. Higher order statistics are necessary to effectively consider all associated factors related to SZI. Two Bayesian networks (BN) were constructed to model SZI and predict changes in injury rate (proportion of injuries to bathers) and injury likelihood (probability of at least one injury occurrence) on an hourly basis. The models incorporate environmental data collected by weather stations, wave gauges, and researcher personnel on the beach. The models include prior (e.g., historic) information to infer relationships between provided parameters. Sensitivity analysis determined the most influential parameters related to injury rates were significant wave height, foreshore slope, and water temperature. Exposure parameters (e.g., air temperature) influenced the number of people in the water, resulting in strong correlation between injury likelihood and the related meteorological conditions (variance reduction > 0.4%). Log likelihood ratio (LLR) scores indicate the network predicts SZI likelihood during any specified hour with more skill than prior predictions with the best performing model improving prediction 69.1% of the time (LLR = 69.1%). An alternative BN predicting injury rate performed worse with the prior probability model out predicting the injury rate network (positive LLR = 36.7%). Issues persist with predicting SZI that have an LLR ≪ -1 (< 5% of 2017 injuries) and occur in conditions different than when most other SZI occur. Better understanding of SZI will improve awareness techniques to both educate beachgoers and assist beach patrol decision making during high risk conditions.

Delaware

Mast seeding patterns are asynchronous at a continental scale

Resource pulses are short duration, high magnitude, rare events that drive the dynamics of both plant and animal populations and communities1. Mast seeding is perhaps the most common type of resource pulse occurring in terrestrial ecosystems2, is characterized by the synchronous and highly variable production of seed crops by a population of perennial plants3,4, and is widespread both taxonomically and geographically5. The rare production of abundant seed crops (‘mast events’) that are orders of magnitude higher than in low seed years lead to high reproductive success in seed consumers, and has cascading impacts in ecosystems2,6. While it is suggested that mast seeding is synchronized at continental scales7, studies are largely constrained to local areas covering 10-100’s of kilometers. Furthermore, summer temperature, which acts as a cue in mast seeding8, shows patterns at continental scales manifested as a juxtaposition of positive and negative anomalies that have been linked to irruptive movements of boreal seed eating birds9. Here we show a breakdown in synchrony of mast seeding patterns across space, leading to asynchrony at a continental scale. We found in an analysis of synchrony for a transcontinental North America tree species spanning distances >5,200 km that mast seeding patterns were significantly asynchronous at distances >2,000 km apart. Other studies have shown declines in synchrony across distance, but not asynchrony. Spatio-temporal variation in summer temperatures at the continental scale drives patterns of synchrony in mast seeding, and we anticipate this impacts the spatial dynamics of numerous seed-eating communities, from insects to small mammals to the large-scale migration patterns of boreal seed eating birds.

Nature Plants

Hotspots of biogeochemical activity linked to aridity and plant traits across global drylands

Perennial plants create productive and biodiverse hotspots, known as fertile islands, beneath their canopies. These hotspots largely determine the structure and functioning of drylands worldwide. Despite their ubiquity, the factors controlling fertile islands under conditions of contrasting grazing by livestock, the most prevalent land use in drylands, remain virtually unknown. Here we evaluated the relative importance of grazing pressure and herbivore type, climate and plant functional traits on 24 soil physical and chemical attributes that represent proxies of key ecosystem services related to decomposition, soil fertility, and soil and water conservation. To do this, we conducted a standardized global survey of 288 plots at 88 sites in 25 countries worldwide. We show that aridity and plant traits are the major factors associated with the magnitude of plant effects on fertile islands in grazed drylands worldwide. Grazing pressure had little influence on the capacity of plants to support fertile islands. Taller and wider shrubs and grasses supported stronger island effects. Stable and functional soils tended to be linked to species-rich sites with taller plants. Together, our findings dispel the notion that grazing pressure or herbivore type are linked to the formation or intensification of fertile islands in drylands. Rather, our study suggests that changes in aridity, and processes that alter island identity and therefore plant traits, will have marked effects on how perennial plants support and maintain the functioning of drylands in a more arid and grazed world.

Nature Plants

Stable isotopes to detect food-conditioned bears and to evaluate human-bear management

We used genetic and stable isotope analysis of hair from free-ranging black bears (Ursus americanus) in Yosemite National Park, California, USA to: 1) identify bears that consume human food, 2) estimate the diets of these bears, and 3) evaluate the Yosemite human–bear management program. Specifically, we analyzed the isotopic composition of hair from bears known a priori to be food-conditioned or non-food-conditioned and used these data to predict whether bears with an unknown management status were food-conditioned (FC) or non-food-conditioned (NFC). We used a stable isotope mixing model to estimate the proportional contribution of natural foods (plants and animals) versus human food in the diets of FC bears. We then used results from both analyses to evaluate proactive (population-level) and reactive (individual-level) human–bear management, and discussed new metrics to evaluate the overall human–bear management program in Yosemite. Our results indicated that 19 out of 145 (13%) unknown bears sampled from 2005 to 2007 were food-conditioned. The proportion of human food in the diets of known FC bears likely declined from 2001–2003 to 2005–2007, suggesting proactive management was successful in reducing the amount of human food available to bears. In contrast, reactive management was not successful in changing the management status of known FC bears to NFC bears, or in reducing the contribution of human food to the diets of FC bears. Nine known FC bears were recaptured on 14 occasions from 2001 to 2007; all bears were classified as FC during subsequent recaptures, and human–bear management did not reduce the amount of human food in the diets of FC bears. Based on our results, we suggest Yosemite continue implementing proactive human–bear management, reevaluate reactive management, and consider removing problem bears (those involved in repeated bear incidents) from the population.

California

Hazard assessment of a simulated oil spill on intertidal areas of the St. Lawrence River with SPMD-TOX

Phytoremediation in a simulated crude oil spill was studied with a “minimalistic” approach. The SPMD-TOX paradigm—a miniature passive sorptive device to collect and concentrate chemicals and microscale tests to detect toxicity—was used to monitor over time the bioavailability and potential toxicity of an oil spill. A simulated crude oil spill was initiated on an intertidal freshwater grass-wetland along the St. Lawrence River southwest of Quebec City, Quebec, Canada. Several phytoremediation treatments were investigated; to dissipate and ameliorate the spill, treatments included nutrient amendments with inorganic nitrogen sources (ammonium nitrate and sodium nitrate) and phosphate (super triple phosphate) with and without cut plants, with natural attenuation (no phytoremedial treatment) as a control. Sequestered oil residues were bioavailable in all oil-treated plots in Weeks 1 and 2. Interestingly, the samples were colored and fluoresced under ultraviolet light. In addition, microscale tests showed that sequestered residues were acutely toxic and genotoxic, as well as that they induced hepatic P 450 enzymes. Analysis of these data suggested that polycyclic aromatic hydrocarbons were among the bioavailable residues sequestered. In addition, these findings suggested that the toxic bioavailable fractions of the oil spill and degradation products dissipated rapidly over time because after the second week the water column contained no oil or detectable degradation products in this riverine intertidal wetland. SPMD-TOX revealed no evidence of bioavailable oil products in Weeks 4, 6, 8, and 12. All phytoremediation efforts appeared to be ineffective in changing either the dissipation rate or the ability to ameliorate the oil toxicity. SPMD-TOX analysis of the water columns from these riverine experimental plots profiled the occurrence, dissipation, and influence of phytoremediation on the bioavailability and toxicity of oil products (parent or degradation products).

Environmental Toxicology