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At least 55 records · Page 3Linked to original sources
USGS2020

How and why is the timing and occurrence of seasonal migrants in the Gulf of Maine changing due to climate?

Plants and animals undergo certain recurring life-cycle events, such as migrations between summer and winter habitats or the annual blooming of plants. Known as phenology, the timing of these events is very sensitive to changes in climate (and changes in one species’ phenology can impact entire food webs and ecosystems). Shifts in phenology have been described as a “fingerprint” of the temporal and spatial responses of wildlife to climate change impacts. Thus, phenology provides one of the strongest indicators of the adaptive capacity of organisms (or the ability of organisms to cope with future environmental conditions). In this study, researchers are exploring how the timing and occurrence of a number of highly migratory marine animals is changing due to a series of climatic and ecological shifts. First, using existing long-term historical data series, they will determine the direction and magnitude of how migration, abundance, or other phenological factors have changed for marine mammals, sea turtles, and fishes that migrate into the Gulf of Maine on a seasonal basis. Because marine animals are inherently difficult to detect, the team will apply dynamic occupancy models to evaluate seasonal migration patterns and habitat use across multiple habitats in the Gulf of Maine region. The project team will also synthesize regional information on a key, ecologically-important prey fish, sandlance, whose timing and abundance is a strong predictor of the occurrence and behavior of predator species targeted in this study as well as a range of other regional fish and wildlife of conservation and management concern. Results from this component of the project will identify coastal fish and wildlife species that are relatively more or less able to adapt and thus potentially vulnerable to climate change; determine the likely primary drivers of those changes; and identify data gaps and future monitoring needs. Ultimately, this information will be available and useful for regional coastal management and adaptation decisions that will allow managers to effectively plan for the future. In a second component of the project, researchers will focus specifically on changes in migration patterns of the endangered North Atlantic right whale. While shifts in the distribution and time of recurring life events are adaptive responses that may help species cope with climate impacts, they can also lead to changes in how species interact with humans. The North Atlantic right whale is one of the most endangered whale species on the planet. In the North Atlantic Ocean, ship strikes and entanglements with commercial fishing gear represent fatal threats to right whales. Recent reports suggest that North Atlantic right whale migration patterns have changed. Many researchers posit that shifts in migration are responsible for recent increases in the overlap between right whales and human activities, especially fishing. To help understand how changes in right whale movements and behaviors may overlap with ship traffic, and thus put the animals at risk of encountering vessels, we will combine right whale habitat models with ship traffic maps. The end result will be a set of maps identifying risk levels.

Gulf of Maine↗
USGS1999

Fishes of Missouri River, chute, and flood plain habitats: Chapter 4 in Initial biotic survey of Lisbon Bottom, Big Muddy National Fish and Wildlife Refuge

The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge (Refuge) is approximately 2,200 acres and is the first complete unit of the Refuge. Primary objectives of the Refuge are to create and restore diverse riverine aquatic habitats and reconnect the Missouri River to its flood plain where feasible. Management seeks to accomplish these objectives by encouraging natural processes of erosion, deposition, and succession to the greatest extent possible. One of the most salient aquatic features of the Lisbon Bottom Unit is a newly created 2-mile-long free-flowing chute, or side channel (Fig. 1). This chute began forming as a levee breech scour hole during the Great Flood of 1993. The chute continued to develop during the 1995 flood and finally cut through to a flowing side channel during the 1996 flood. Extensive erosion and bank sluffing continued during 1997 due to sustained high flows that occurred throughout most of the year. The chute has progressively become wider and deeper with a developing meander pattern and channel bars have begun to form. Lisbon Bottom also contains several seasonal and permanent wetlands and is subject to periodic flooding at high Missouri River stages. Eight studies have been completed or are ongoing to evaluate Missouri River fishes associated with various habitat components of Lisbon Bottom and adjacent Missouri River reaches (Table 1). Several are part of much larger investigations to evaluate fish use of flood-created habitat features, basinwide fish assessment, and endangered or candidate species concerns. At the Lisbon Bottom Unit or in the Missouri River adjacent to the unit 54 fish species were collected (Table 2). Eight of these species have either a protected status under State or Federal laws or biologists consider them to potentially qualify for protected status. The status of the following fish is listed in Table 2: pallid sturgeon x shovelnose sturgeon hybrid, paddlefish, northern pike, sturgeon chub, sicklefin chub, ghost shiner, western silvery minnow, plains minnow, and blue sucker. Equally important to note are fish species that were not collected. The flathead chub, currently listed as State endangered and proposed for Federal listing, were not collected in any of the studies. Common fish species, collected in all seven sampling studies, included gizzard shad, common carp, river carpsucker, and freshwater drum. Paddlefish, skipjack herring, silver carp, white sucker, redfin shiner, western silvery minnow, bullhead minnow, and black bullhead were each collected in only one of the seven studies. Pflieger (1971) developed a guild system for the fishes of Missouri based on distribution patterns and centers of abundance. Fish were assigned to one of four primary faunal groups: Ozark, Big River, Lowland, and Prairie. Two secondary groups (Ozark-prairie and Ozark-lowland) were defined for species equally abundant and distributed in two of the primary areas. Two Ozark-prairie species, shorthead redhorse and white sucker, were collected on or near the Lisbon Bottom Unit. Big River species are found primarily in the Missouri and Mississippi Rivers. The environmental factors controlling fish distribution in these rivers appear to be substrate, current velocity, and turbidity. On or near the Lisbon Bottom Unit 18 Big River species were collected (Table 2). Lowland species are intolerant of siltation and high turbidity. They inhabit standing or slow-moving water with sand, fine gravel, and organic debris substrates. Two Lowland species, bullhead minnow and mosquitofish, were collected in connected scours on the Lisbon Bottom Unit. Prairie species have broader ecological tolerances than the Ozark and Lowland species. They are largely absent in high gradient streams and cool, clear waters. Prairie species make up a significant proportion of Missouri and Mississippi River fishes. Seven Prairie species were collected on or near the Lisbon Bottom Unit (Table 2). The last group, Wide-ranging, was defined as the species more widespread than the other faunal groups with broader environmental tolerances. Most Wide-ranging species occur at least occasionally in all sections of the state. Nineteen Wide-ranging species were collected on or near the Lisbon Bottom Unit (Table 2). Kubisiak (1997) found that isolated scours in the Lower Missouri River were dominated by Wide-ranging species. Connected scours also held Wideranging species but they contained Prairie species and were dominated by Big River species. Faunal group diversity and species richness were compared between isolated (Study l) and connected (Studies 4, 5, 7, and 8) scours of the Lisbon Bottom Unit. Species richness was similar with 22 species collected in isolated scours and an average of 24.8 species collected in connected scours. Isolated scour fish catches were dominated by Wide-ranging fish (59%) with 14% Big River fishes and 14% Prairie fishes. Connected scours had a larger percentage of Big River fish (32%) and fewer Wide-ranging (36%) and Prairie (13%) species than the isolated scours. In the combined studies, Wide-ranging fish dominated the connected scours. A similar comparison was made of fish from chute habitats and the Missouri River. Chute habitats include the Lisbon Bottom Chute, the chute between the right bank and island located at river mile 219, and a shallow channel running between a large sandbar complex and the channel border adjacent to Lisbon Bottom. Species richness in the chutes (35 species) was greater than that of the adjacent river (23 species). Big River species (40%) dominated the chute samples, followed by Wide-ranging at 31% Cand Prairie Cut 14%. The river samples contained equal numbers of Wide-ranging species (35%) and Big River species (35%) with 17% Prairie species. Differences in fish guild diversity and species richness may be due to numerous factors including sampling effort and sampling season. River samples were collected only in Study 3 in October; chute samples were collected in July, August, and October. Fish may have been using the chute in July and August to spawn, feed, or escape high river levels. The Lisbon Bottom Chute is a truly unique feature of the Lower Missouri River. It is the first naturally created side channel to develop since the U.S. Army Corps of Engineers tamed the river. The Corps eliminated 89% of the islands in the Missouri River between 1879 and 1954 (Funk and Robinson 1974). The chutes between the islands and the shore were shallower with less current than the main channel. These areas provided diversity to the Missouri River fish habitat, serving as nursery and feeding areas. The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge will continue to be studied in an effort to understand the complex role these areas play in river systems.

Missouri↗
USGS2017

Hawai`i forest bird monitoring database: Database dictionary

Between 1976 and 1981, the U.S. Fish and Wildlife Service (now U.S. Geological Survey – Pacific Island Ecosystems Research Center [USGS-PIERC]) conducted systematic surveys of forest birds and plant communities on all the main Hawaiian Islands, except O‘ahu, as part of the Hawai‘i Forest Bird Surveys (HFBS). Results of this monumental effort have guided conservation efforts and provided the basis for many plant and bird recovery plans and land acquisition decisions in Hawai‘i. Unfortunately, these estimates and range maps are now seriously outdated, hindering modern conservation decision-making and recovery planning. HFBIDP staff work closely with land managers and others to identify the location of bird populations in need of protection. In addition, HFBIDP is able to assess field collection methods, census areas, and survey frequency for their effectiveness. Survey and geographical data are refined and released in successive versions, each more inclusive, detailed, and accurate than the previous release. Incrementally releasing data gives land managers and survey coordinators reasonably good data to work with early on rather than waiting for the release of ‘perfect’ data, ‘perfectly’ analyzed. Consequently, summary results are available in a timely manner.

Technical Report↗
USGS2017

Vulnerabilities to climate change of Massachusetts animal species of greatest conservation need

Over the last decade, the Commonwealth of Massachusetts has addressed the potential and actual impacts of climate change on state flora and fauna. The state’s involvement began in 2007 when, led by the Division of Fisheries and Wildlife (DFW) and assisted by Manomet Center for Con-servation Research, it carried out one of the first habitat vulnerability assessments in North America (Manomet, 2010). The new methods and processes that resulted were later applied to vulnerability assessments in North America and elsewhere. In 2011, the state assisted the North-eastern Association of Fish and Wildlife Agencies (NEAFWA) in organizing and leading a pio-neering three-year, thirteen-state research effort to evaluate the vulnerabilities of fish and wild-life habitats to climate change in the northeast, from Maine south to West Virginia (NEAFWA, 2012). This focus on climate change vulnerabilities led to three important early realizations: (1) simply categorizing and scoring vulnerabilities might not lead to better conservation outcomes. It was vital to also understand why some resources were more or less vulnerable to climate change in order to identify potential intervention points on which conservation actions and strategies could be based. (2) simply producing research results was not enough; these results had to be cast as specific conservation actions. Moreover (3), these actions needed to be communicated in a useful form to conservation “actors”, such as state agencies, land trusts, land managers, etc. These real-izations led to the next step on the Commonwealth’s journey to effective conservation in an age of climate change - the Massachusetts Wildlife Climate Action Tool (CAT).

Report↗
USGS1997

Field screening of water quality, bottom sediment, and biota associated with irrigation drainage in the Yuma Valley, Arizona, 1995

Because of concerns expressed by the U.S. Congress and the environmental community, the Department of the Interior began a program in late 1985 to identify the nature and extent of water-quality problems induced by irrigation that might exist in the western States. Surface water, bottom sediment, and biota were collected from March through September 1995 along the lower Colorado River and in agricultural drains at nine sites in the Yuma Valley, Arizona, and analyzed for selected inorganic and organic constituents. Analyses of water, bottom sediment, and biota were completed to determine if irrigation return flow has caused, or has the potential to cause, harmful effects on human health, fish, and wildlife in the study area. Concentrations of dissolved solids in surface-water samples collected in March generally did not vary substantially from surface-water samples collected in June. Concentrations of dissolved solids ranged from 712 to 3,000 milligrams per liter and exceeded the U.S. Environmental Protection Agency secondary maximum contaminant level of 500 milligrams per liter for drinking water. Concentrations of chloride in 9 of 18 water samples and concentrations of sulfate in 16 of 18 water samples exceeded the U.S. Environmental Protection Agency secondary maximum contaminant level of 250 milligrams per liter for drinking water. Calcium and sodium were the dominant cations, and chloride and sulfate were the dominant anions. The maximum selenium concentration of 8 micrograms per liter exceeded the U.S. Environmental Protection Agency aquatic-life chronic criterion of 5 micrograms per liter. Concentrations of lead in 7 of 18 water samples and concentrations of mercury in 4 of 18 water samples exceeded the aquatic-life cronic criteria of 3.2 and 0.012 micrograms per liter, respectively. Concentrations of antimony, beryllium, cadmium, and silver in the water samples were below analytical reporting limits. Arsenic was detected in 3 of 9 bottom-sediment samples, and concentrations ranged from 11 to 16 micrograms per gram. Concentrations ofaluminum, beryllium, boron, copper, lead, and zinc were highest in samples from Main Drain at southerly international boundary near San Luis, Arizona. Selenium was detected in all bottom-sediment samples, and concentrations ranged from 0.1 to 0.7 micrograms per gram. Concentrations of cadmium, europium, homium, mercury, molybdenum, silver, tantalum, tin, and uranium were below analytical reporting limits in the bottom-sediment samples. Concentrations of trace elements in bottom-sediment samples were within the ranges found in a study of soils of the western United States and did not indicate a significant accumulation of these constituents. p,p'Dichlorodiphenyldichloroethylene (commonly referred to as p,-p'-DDE) was detected in one bottom-sediment sample at a concentration of 1.4 micrograms per gram. No other organochlorine compounds were detected in the bottom-sediment samples. DDE was present in all fish and bird samples. Almost one-half of the fish samples contained DDE residues that were two times higher than the mean calculated for a national study in 1984-85. Twenty-tree percent of the fish contained more than three times the national mean. Fish from downstream parts of the Main Drain had the highest concentrations of DDE. Although concentrations of DDE in fish and in bird carcasses and eggs were above background levels, residues generally were below thresholds associated with chronic poisoning and reproductive problems in figh and wildlife. Concentrations of 18 trace elements were detected in cattail (Typha sp.) roots, freshwater clam (Corbicula fluminea), fish, and bird samples. Selenium in most fish and in livers of red-winged (Agelaius phoeniceus) and yellow-headed (Xanthocephalus xanthocephalus) blackbirds was above background concentrations but below toxic concentrations. In contrast, selenium was present in a killdeer (Charadrium vociferus) liver sample at potentially toxic con

Water-Resources Investigations Report↗
USGS2008

Microhabitat use by brook trout inhabiting small tributaries and a large river main stem: Implications for stream habitat restoration in the central Appalachians

Brook trout (Salvelinus fontinalis) habitat restoration is needed across a range of stream sizes; however, studies quantifying brook trout habitat preferences in streams of differing sizes are rare. We used radio-telemetry to quantify adult brook trout microhabitat use in a central Appalachian watershed, the upper Shavers Fork of the Cheat River in eastern West Virginia. Our objectives were to: 1) quantify non-random microhabitat use by adult brook trout in the Shavers Fork main stem (drainage area = 32 km2) and an adjacent tributary, Rocky Run (drainage area = 7 km2); and 2) construct stream-specific habitat suitability curves (HSCs) for four important microhabitat variables (depth, average current velocity, maximum current velocity within one meter, and distance to cover). Brook trout used a subset of available microhabitats in both the main stem and Rocky Run: trout tended to occupy microhabitats that were deeper, higher velocity, and closer to cover than expected by chance alone. Although specific microhabitat values differed between the main stem and tributary populations, the overall patterns in brook trout microhabitat use were consistent regardless of stream size. Habitat suitability curves were constructed based on brook trout microhabitat use and will be used to design and monitor the effectiveness of future habitat restoration efforts in the Shavers Fork watershed. Our results suggest that habitat enhancement projects that increase the availability of deep, high velocity microhabitats adjacent to cover would benefit brook trout in both small tributaries and larger river main stems.

Proceedings of the Southeastern Association of Fis↗
USGS2010

Neosho madtom and other ictalurid populations in relation to hydrologic characteristics of an impounded Midwestern warmwater stream: Update

The Neosho madtom, Noturus placidus , is a small (less than 75 millimeters in total length) ictalurid that is native to the main stems of the Neosho and Cottonwood Rivers in Kansas and Oklahoma and the Spring River in Kansas and Missouri. The Neosho madtom was federally listed as threatened by the U.S. Fish and Wildlife Service in May 1990. The U.S. Fish and Wildlife Service has been monitoring Neosho madtoms since 1991, and questioned whether or not Neosho madtom densities were affected by other catfish species, reservoirs, and hydrologic characteristics. Using the first 8 years of U.S. Fish and Wildlife Service monitoring data, Wildhaber and others (2000) analyzed whether or not Neosho madtom densities were related to these environmental characteristics. The goal of this report is to update these results with data from 1999 to 2008. The trends of Neosho madtom densities in respect to John Redmond Reservoir and other catfish species remains consistent with the previous report. In both the Neosho and Spring Rivers, Neosho madtoms had a significant positive association with all catfish species. Of those species tested, only in the population of Neosho madtoms were significantly different in density above verses below the John Redmond Reservoir after accounting for the yearly variation. The average density of Neosho madtoms at the streamgage immediately below the reservoir had the second lowest density compared to the other streamgages. The positive associations with Neosho madtoms that remained consistent from the previous report included the 1-, 3-, and 7-day minima discharges and the annual minimum discharge from the previous water year (water year prior to when the fish were sampled) and the 1-, 3-, 7-, and 30-day minima discharges from the current water year (same water year fish were sampled).

Kansas, Missouri, Oklahoma↗
USGS1996

Comparative demography of sea otter populations

Population trends are poorly documented and demographic information is typically lacking for many carnivorous mammals. The sea otter ( Enhydru lutris ) has a well known history of decline and recovery, and while many other species have declined as precipitously, few have recovered so spectacularly. Generally speaking, northern populations (remnants within the range of E. l. lutris and E. l. kenyoni ) have recovered at high rates while recovery of the southern sea olter ( E. I. nereis ), which is listed as legally threatened under the Endangered Species Act (ESA), has progressed more slowly. Our purpose is to contrast trends in abundance and demographic patterns between Southern California and northern (Washington, British Columbia, Alaska, and Asia) sea otter populations. Specifically, we provide (1) a brief review of the main findings to date: (2) a summary of ongoing and planned studies; and (3) recommendations for future research. A more detailed account of these and other issues concerning the conservation and management of sea otters is provided in the U.S. Fish and Wildlife Service's Recovery Plan for the Califomia Sea Otter (U.S. Fish and Wildlife Service 1996).

Endangered Species UPDATE↗
USGS2010

The power to detect trends in Missouri River fish populations within the Pallid Sturgeon Population Assessment Program

As with all large rivers in the United States, the Missouri River has been altered, with approximately 32.5 percent of the main stem length impounded and 32.5 percent channelized. These physical alterations to the environment have had effects on the fisheries, but studies examining the effects of alterations have been localized and for short periods of time. In response to the U.S. Fish and Wildlife Service biological opinion, the U.S. Army Corps of Engineers initiated monitoring of the fish community of the Missouri River in 2003. The goal of the Pallid Sturgeon Population Assessment Program is to provide information to detect changes in populations and habitat preferences with time for pallid sturgeon (Scaphirhynchus albus) and native target species in the Missouri River Basin. To determine statistical power of the Pallid Sturgeon Population Assessment Program, a power analysis was conducted using a normal linear mixed model with variance component estimates based on the first 3 years of data (2003 to 2005). In cases where 3 years of data were unavailable, estimates were obtained using those data. It was determined that at least 20 years of data, sampling 12 bends with 8 subsamples per bend, would be required to detect a 5 percent annual decline in most of the target fish populations. Power varied between Zones. Zone 1 (upstream from Lake Sakakawea) did not have any species/gear type combinations with adequate power, whereas Zone 3 (downstream from Gavins Point Dam) had 19 species/gear type combinations with adequate power. With a slight increase in the sampling effort to 12 subsamples per bend, the Pallid Sturgeon Population Assessment Program has adequate power to detect declines in shovelnose sturgeon (S. platorynchus) throughout the entire Missouri River because of large catch rates. The lowest level of non-occurrence (in other words, zero catches) at the bend level for pallid sturgeon was 0.58 using otter trawls in Zone 1. Consequently, the power of the pallid sturgeon models was not as high as other species at the current level of sampling, but an increase in the sampling effort to 16 subsamples for each of 24 bends for 20 years would generate adequate power for the pallid sturgeon in all Zones. Since gear types are selective in their species efficiency, the strength of the Pallid Sturgeon Population Assessment Program approach is using multiple gears that have statistical power to detect population trends at the same time in different fish species within the Missouri River. As often is the case with monitoring studies involving endangered species, the data used to conduct the analyses exhibit some departures from the parametric model assumptions; however, preliminary simulations indicate that the results of this study are appropriate.

Open-File Report↗
USGS2002

Selenium biotransformations into proteinaceous forms by foodweb organisms of selenium-laden drainage waters in California

Selenium contamination represents one of the few clear cases where environmental pollution has led to devastation of wildlife populations, most notably in agricultural drainage evaporation and power plant coal-fly ash receiving ponds. Complex biogeochemistry, in particular extensive biotransformations and foodchain transfer, governs Se ecotoxicology and toxicology, for which the mechanism(s) are still elusive. However, total waterborne Se concentration has been widely used as a criterion for regulating and mitigating Se risk in aquatic ecosystems, which does not account for Se biogeochemistry and its site-dependence. There is a need for more reliable indicator(s) that encompass Se ecotoxicity and/or toxicity. Selenomethionine warrants special attention since it simulates Se toxicosis of wildlife in laboratory feeding studies. While low in free selenomethionine, microphytes isolated from Se-laden agricultural evaporation ponds were abundant in proteinaceous selenomethionine. This prompted a more extensive survey of Se speciation in foodchain organisms including microphytes, macroinvertebrates, fish, and bird embryos residing mainly in the agricultural drainage systems of the San Joaquin Valley, California. Total Se in biomass, water-soluble fractions, and protein-rich fractions were measured along with GC-MS analysis of proteinaceous selenomethionine. In all foodchain organisms, water-soluble Se constituted the major fraction of total biomass Se, while proteinaceous Se was a substantial, if not dominant, fraction of the water-soluble Se. In turn, proteinaceous selenomethionine comprised an important fraction of proteinaceous Se. In terms of total biomass Se, an average 1400-fold of Se biomagnification from water to microphytes was observed while subsequent transfer from microphytes to macroinvertebrates exhibited an average of only 1.9-fold. The latter transfer was more consistent and greater in extent for proteinaceous Se and proteinaceous selenomethionine, which is consistent with their importance in foodchain transfer. Proteinaceous Se in the omnivorous carp (Cyprinus carpio) liver also demonstrated a relation to ovarian lesions, while deformed stilt (Himantopus mexicanus) embryo was more abundant in proteinaceous selenomethionine than were normal embryos. Although limited in the number of organisms surveyed, these findings provide an impetus for further field and laboratory feeding studies to substantiate the hypothesis that proteinaceous selenomethionine underlies Se ecotoxicity, which may in turn prove to be a reliable indicator of Se risk in aquatic ecosystems. Copyright ?? 2002 Elsevier Science B.V.

Aquatic Toxicology↗
USGS2004

Physical habitat dynamics in four side-channel chutes, lower Missouri River

Construction of the side-channel chutes has become a popular means to rehabilitate habitate of the Lower Missouri River. We studied various aspects of hydrology, hydraulics, and geomorphology of four side-channel chutes to document a range of existing conditions in the Lower Missouri River. The Cranberry Bend side-channel chute has existed for at least 40 years and is an example of a persistent, minimally engineered chute. The Lisbon Bottom side-channel chute is a young chute, created by extreme floods during 1993 – 1996, and allowed to evolve with minimum engineering of inlet and outlet structures. The Hamburg Bend and North Overton Bottom side-channel chutes were constructed in 1996 and 2000, respectively, as part of the Missouri River Bank Stabilization and navigation Fish and Wildlife Mitigation Project. These side-channel chutes provide increased areas of sandbars and shallow, slow water – habitats thought to be substantially diminished in the modern Missouri River. Depths and velocities measured in side-channel chutes are also present in the main channel, but the chutes provide more areas of slow, shallow water and they increase the range of discharges over which shallow, slow water is present. The 3.6 km long Lisbon Bottom chute provides as much as 50% of the entire shallow water habitat that exists in the encompassing 15 km reach of the river. At Cranberry Bend and Lisbon Bottom, the side-channel chutes provided 10 – 40% of the availabile sandbar area in the reach, depending on discharge. Each of the side-channel chutes shows evidence of continuing erosion and deposition. The longevity and the Cranberry Bend chute attests to dynamic stability – that is, a chute that maintains form and processes while shifting in position. The Hamburg chute similarly shows evidence of lateral movement and construction of flood plain to compensate for erosion. The Lisbon Bottom chute – the most intensively studied chute – appears to have achieved an equilibrium width and continues to migrate slowly; however, evidence of aggradation indicates that the chute has not reached an ultimate form, and may be continuing to adjust to altered hydrology and sediment availability. The North Overton Bottoms chute is the newest in the study. In its originally constructed form, the North Overton Bottoms pilot chute was extremely stable, even while being subjected to two floods in excess of 2-year recurrence interval and after accumulating large, potentially destabilizing large woody debris jams. Ongoing adaptive re-engineering of the North Overton Bottoms chute has prevented assessment of how the chute might have adjusted its form in the absence of intervention.

Iowa, Kansas, Missouri, Nebraska↗
USGS2025

Controls on sediment transport and storage in the Little Snake, Yampa, and Green Rivers in the vicinities of Dinosaur National Monument and Ouray National Wildlife Refuge, Colorado and Utah, with implications for fish habitat in the middle Green River

The transport of sand and finer sediment in the Yampa and Green river network is typically in disequilibrium with the local sediment supply because of the partial decoupling of the sources of water and sediment: most of the water is supplied farther upstream than most of the sediment. This decoupling leads to sand being transported in the main-stem rivers as elongating sand waves following sand resupply during tributary floods. Because of the large amount of sand supplied to the Yampa River by the Little Snake River, Yampa River annual floods generate sand waves that migrate downstream in the Green River causing longitudinal patterns in bed-sand grain size that, in turn, lead to large spatial changes in sand transport. These changes in bed-sand grain size dominate over changes in water discharge in regulating sand transport in the sand-bedded reaches of these rivers. Furthermore, at any given discharge, these changes in bed-sand grain size dominate over all other processes in regulating sand transport in both sand- and gravel-bedded reaches of these rivers. Consequently, erosion or deposition of sand, and the associated changes in fish habitat in the Uinta Basin segment of the Green River are only indirectly related to Green River discharge and Flaming Gorge Dam operations. Owing to the longitudinal patterns of bed-sand grain size associated with the downstream migration of sand waves generated by the Yampa River, a multi-year sequence of large, and likely slightly declining, annual floods on the Yampa River is the probable mechanism that increases backwater fish habitat in the Uinta Basin segment of the Green River. Cross-section resurveys indicate that the Uinta Basin (Jensen to Ouray) segment of the Green River has undergone sand erosion caused by slight channel widening since the 1990s (a channel response in opposition to that observed farther downstream in Canyonlands National Park during this period). These resurveys indicate that sand deposition leads to a decrease in channel complexity whereas sand erosion generally leads to an increase in channel complexity. The backwaters used as native fish nursery habitat consist of deep pools downstream from and adjacent to large bank-attached sandbars; thus, more extensive backwater habitat equates to greater channel complexity. The generation of the sand wave during the first large Yampa River flood in a sequence (that is, the year-1 flood) causes fining of the bed sand near Jensen. The downstream coarsening associated with bed sand that is finer near Jensen than downstream near Ouray causes a downstream decrease in sand transport in the Uinta Basin segment, leading to net sand deposition and decreased channel complexity. Continued downstream migration of this sand wave during the following year’s annual flood (that is, the year-2 flood) then causes downstream fining, leading to erosion of sand and increased channel complexity in this segment. Although the year-1 Yampa River flood supplies the sand and deposits the large sandbars required to form backwaters, and thereby makes possible future backwater habitat, these floods cause a temporary reduction in backwater habitat in the Uinta Basin segment because they tend to cause net sand deposition. It is the subsequent out-year Yampa River floods of likely equal or lesser magnitude that maintain or increase backwater habitat because these are the floods that convey sand through or erode sand from this segment. These typically smaller out-year Yampa River floods rework the sandbars deposited during the year-1 annual flood, thereby leading to the increases in both backwater area and volume that have been measured upon recession of these floods. Although artificial floods released from Flaming Gorge Dam might be used to simulate the habitat maintenance achieved by out-year Yampa River floods, the limited sand supply and stage associated with such dam releases precludes their use as a replacement for the sandbar-depositing role of year-1 Yampa River floods that is a prerequisite for backwater formation in the Uinta Basin segment of the Green River.

Colorado, Utah↗
USGS1995

Mercury contamination of aquatic ecosystems

Mercury has been well known as an environmental pollutant for several decades. As early as the 1950's it was established that emissions of mercury to the environment could have serious effects on human health. These early studies demonstrated that fish and other wildlife from various ecosystems commonly attain mercury levels of toxicological concern when directly affected by mercury-containing emissions from human-related activities. Human health concerns arise when fish and wildlife from these ecosystems are consumed by humans. During the past decade, a new trend has emerged with regard to mercury pollution. Investigations initiated in the late 1980's in the northern-tier states of the U.S., Canada, and Nordic countries found that fish, mainly from nutrient-poor lakes and often in very remote areas, commonly have high levels of mercury. More recent fish sampling surveys in other regions of the U.S. have shown widespread mercury contamination in streams, wet-lands, reservoirs, and lakes. To date, 33 states have issued fish consumption advisories because of mercury contamination. These continental to global scale occurrences of mercury contamination cannot be linked to individual emissions of mercury, but instead are due to widespread air pollution. When scientists measure mercury levels in air and surface water, however, the observed levels are extraordinarily low. In fact, scientists have to take extreme precautions to avoid direct contact with water samples or sample containers, to avert sample contamination (Fig 3). Herein lies an apparent discrepancy: Why do fish from some remote areas have elevated mercury concentrations, when contamination levels in the environment are so low?

Fact Sheet↗
USGS2024

Restoring Pacific Lamprey in the Umpqua River Basin of Oregon: A workshop summary

The Umpqua River Basin in southwestern Oregon (Figure 1) is part of the lands inhabited by the Cow Creek Band of Umpqua Tribe of Indians and an area of active co-management authority. This Basin supports a unique fish fauna, including important populations of Pacific salmon ( Oncorhynchus spp.) and steelhead ( O. mykiss ), and other native fishes that are endemic to the region (Mims et al. 2018). Among these species, the Pacific Lamprey ( Entosphenus tridentatus ) is one of the most unique, representing an ancient lineage of jawless fishes that long predates the evolution of any other species of fish in the basin (Clemens et al. 2017, 2021a). The Pacific Lamprey also represents an important cultural and food resource that features prominently in the indigenous practices of the Cow Creek Band of Umpqua Tribe of Indians. This report provides a select summary of topics related to the conservation of Pacific Lamprey in the Umpqua River Basin. Many of the topics addressed herein were discussed in a workshop co-hosted by the Cow Creek Band of Umpqua Tribe of Indians and the U.S. Geological Survey in April of 2022. This workshop was focused on threats to Pacific Lamprey in fresh waters of the basin. The workshop highlighted science conducted over the past 15 years by local managers and researchers to understand and address these threats and provide new information relevant to the conservation and restoration of Pacific Lamprey. Attendees included staff from the Coquille Indian Tribe, Yakama Nation, Columbia River Inter-Tribal Fish Commission, Partnership for Umpqua Rivers, Rogue River Watershed Council, Curry Watersheds Council, PacifiCorp, Trout Unlimited, Jackson Soil and Water Conservation District, Oregon Department of Fish and Wildlife, Bureau of Land Management, U.S. Fish and Wildlife Service, and U.S. Forest Service. This report provides an overview of this workshop and recent science and provides an overview of potential future efforts that could inform restoration of Pacific Lamprey. This summary is organized into four sections that relate to the main topics of the workshop: 1) The physical habitat template (stream flow, instream wood, sediment, and water temperature), 2) movement barriers and reservoirs, 3) biological invasions, and 4) climate adaptation. These do not represent an exhaustive list of topics related to conservation of Pacific Lamprey in the Umpqua Basin.

Oregon↗
USGS1995

Agricultural drainwater effects on wildlife in central California

In California's San Joaquin Valley and in numerous other agricultural areas in the western U.S., irrigation wastewater may accumulate in confined shallow aquifers, eventually rising to levels that adversely affect crops. To sustain long-term agricultural productivity in these regions, systems for the drainage and disposal of this subsurface wastewater must be installed. 1,2 the drained water may contain an array of soluble chemicals that have been applied to the crops, as well as those that have been leached from native soils. Agricultural drainwater is frequently disposed of by discharging it to surface aquatic systems where these constituents may be directly toxic to aquatic organisms, or they may bioaccumulate through the aquatic food webs upon which birds and other wildlife feed. The focus of this chapter is research conducted since 1983 to assess the effects of wildlife exposure to subsurface agricultural drainwater in the San Joaquin Valley. Agricultural drainwater is discharged primarily to tributaries and wetlands of the San Joaquin River system or, especially in the southern San Joaquin Valley, to evaporation ponds. 3 Because of high nutrient content in the drainwater, evaporation ponds have high levels of biological productivity and provide an abundant food supply for aquatic birds. Aquatic birds (primarily waterfowl and shorebirds) have been the main focus of wildlife research at the evaporation ponds, and at managed wetlands (primarily hunting clubs) within the San Joaquin River system, but mammals, snakes, and frogs have also been studied. Findings of those studies are summarized in this chapter. Other studies have been conducted on fish and aquatic invertebrates in areas receiving agricultural drainwater, but in this review those findings are described only as they relate to dietary exposure of wildlife.

Book chapter↗
USGS1980

Toxicity of five forest insecticides to cutthroat trout and two species of aquatic invertebrates

The Northern Rocky Mountain region has had scattered infestation of the western spruce budworm Christoneura occidentalis since the early 1900's (U.S. DEPARTMENT OF AGRICULTURE (USDA) 1976b). On the basis of aerial surveys in 1975, TUNNOCK et al. (1976), estimated that budworm defoliation occurred on 2,278,804 acres of six National Forests in Montana. Since the use of DDT was banned in 1972, there has been a need to develop alternative insecticides with the efficacy of DDT but without its environmental risk. These insecticides must be effective in controlling the budworm, but should not persist in the environment or be toxic to other organisms. The organophosphate and carbamate insecticides are relatively nonpersistent and generally present only a moderate hazard to fish when applied according to label recommendations. The USDA Forest Service has been investigating the effectiveness of these two classes of insecticides against the budworm, and the Columbia National Fisheries Research Laboratory of the U.S. Fish and Wildlife Service has been cooperating with the Forest Service conducted pilot control projects in eastern Montana in 1975 and 1976 to determine the efficacy and environmental impact of acephate, carbaryl, and trichlorfon in controlling the western budworm (USDA 1976 b). In 1975, a similar type project was carried out in Maine with aminocarb, fenitrothion, and trichlorfon (USDA 1976 a). Acephate, fenitrothion, and trichlorfon (organophosphate insecticides) and aminocarb and carbaryl (carbamate insecticides) were selected for toxicity tests against cutthroat trout ( Salmo clarki ), a stonefly ( Pteronarcella badia ), and a freshwater amphipod ( Gammarus pseudolimnaeus ) edemic in streams of the northern Rocky Mountains. Populations of cutthroat trout inhabit lakes and streams in the Rocky Mountains which include some of the most pristine habitat and fisheries in North America. Pteronarcella and Gammarus provide forage for cutthroat trout and feed on decaying vegetation in riffle areas in streams and rivers. Stonefly naiads and amphipods were selected as test organisms because of their importance as trout food and their wide distribution in mountain stream communities. We determined the effect of various water types representing different biogeographical areas in the Intermountain West on the toxicity of these five forest insecticides.

Bulletin of Environmental Contamination and Toxico↗
USGS2020

Looking at the bigger picture: How abundance of nesting and brooding habitat influences lek-site selection by Lesser Prairie-Chickens

Lesser Prairie-Chicken ( Tympanuchus pallidicinctus ) populations have declined throughout most of their distribution since the mid-1980s. These declines are largely attributed to loss of habitat through the conversion and expansion of cropland, construction of oil wells and other anthropogenic features on the landscape, and grazing intensification. Changes in habitat availability and quality are seemingly having a disproportionate effect on the reproductive habitat of Lesser Prairie-Chickens, as some populations continue to decline. Nest and brood survival are crucial to population growth of Lesser Prairie-Chickens, with adequate reproductive habitat vital to population persistence. To better understand the influence of reproductive habitat availability on populations, we quantified the composition of reproductive habitat in lek landscapes across the northern extent of the Lesser Prairie-Chicken range. We measured vegetation at six study sites in Kansas and Colorado from 2013–2016. We sought to quantify available nest and brooding habitat adjacent to leks, investigate the relationship between reproductive habitat availability and lek attendance by males at several spatial scales, and examine vegetation characteristics that influence lek attendance. Within 5 km of a lek, 25% (2546/10,320 points) and 26% (2682/10,320 points) of random locations provided nesting and brooding habitat, respectively. Changes to reproductive habitat at both scales affected male attendance at leks. Visual obstruction of vegetation was the main predictor of male lek attendance at both spatial scales and limited the amount of reproductive habitat in lek landscapes. Accordingly, management should increase visual obstruction throughout the Lesser Prairie-Chicken range to increase reproductive success and improve populations to facilitate achieving the conservation goal set by the Western Association of Fish and Wildlife Agencies of a 10 y average Lesser Prairie-Chicken population of 67,000 birds.

Colorado, Kansas↗
USGS2017

An update of the Death Valley regional groundwater flow system transient model, Nevada and California

Since the original publication of the Death Valley regional groundwater flow system (DVRFS) numerical model in 2004, more information on the regional groundwater flow system in the form of new data and interpretations has been compiled. Cooperators such as the Bureau of Land Management, National Park Service, U.S. Fish and Wildlife Service, the Department of Energy, and Nye County, Nevada, recognized a need to update the existing regional numerical model to maintain its viability as a groundwater management tool for regional stakeholders. The existing DVRFS numerical flow model was converted to MODFLOW-2005, updated with the latest available data, and recalibrated. Five main data sets were revised: (1) recharge from precipitation varying in time and space, (2) pumping data, (3) water-level observations, (4) an updated regional potentiometric map, and (5) a revision to the digital hydrogeologic framework model. The resulting DVRFS version 2.0 (v. 2.0) numerical flow model simulates groundwater flow conditions for the Death Valley region from 1913 to 2003 to correspond to the time frame for the most recently published (2008) water-use data. The DVRFS v 2.0 model was calibrated by using the Tikhonov regularization functionality in the parameter estimation and predictive uncertainty software PEST. In order to assess the accuracy of the numerical flow model in simulating regional flow, the fit of simulated to target values (consisting of hydraulic heads and flows, including evapotranspiration and spring discharge, flow across the model boundary, and interbasin flow; the regional water budget; values of parameter estimates; and sensitivities) was evaluated. This evaluation showed that DVRFS v. 2.0 simulates conditions similar to DVRFS v. 1.0. Comparisons of the target values with simulated values also indicate that they match reasonably well and in some cases (boundary flows and discharge) significantly better than in DVRFS v. 1.0.

California, Nevada↗