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Cascading effects of fire exclusion in Rocky Mountain ecosystems: A literature review
The health of many Rocky Mountain ecosystems is in decline because of the policy of excluding fire in the management of these ecosystems. Fire exclusion has actually made it more difficult to fight fires, and this poses greater risks to the people who fight fires and for those who live in and around Rocky Mountain forests and rangelands. This paper discusses the extent of fire exclusion in the Rocky Mountains, then details the diverse and cascading effects of suppressing fires in the Rocky Mountain landscape by spatial scale, ecosystem characteristic, and vegetation type. Also discussed are the varied effects of fire exclusion on some important, keystone ecosystems and human concerns.
Literature review and synthesis of information on Pacific island ecosystems
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Impacts of navigational dredging on fish and wildlife: a literature review
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The alkali (Scirpus maritimus L.) and saltmarsh (S. robustus Pursh) bulrushes : a literature review
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Ecological effects of dredging and dredge spoil disposal: a literature review
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Social and biological perspectives to investigate and address illegal shooting of raptors
Humans have shot raptors for centuries. However, in many countries these actions have been illegal since the mid-twentieth century. Despite this history, there is not a comprehensive understanding of the characteristics of this activity, its frequency, and why it occurs. We used literature review and principles drawn from ecology, sociology, and criminology to understand this problem. First, we review literature on raptor shooting globally to explore documented motivations for shooting and we describe the history of raptor shooting in the United States of America (USA). Then, to illustrate the contemporary frequency and geographic breadth of the shooting of raptors, we systematically compile records from scientific and media reports from across the USA. Finally, we outline a transdisciplinary framework to meet the challenge of understanding and managing illegal shooting of raptors. Our framework encompasses six best practices: (1) understand the biology of the problem, (2) build professional networks and partnerships, (3) leverage engagement and public support, (4) apply insights from study of human-wildlife interactions, (5) draw lessons from criminology, and (6) use implementation science to evaluate outcomes. We illustrate application of these best practices with a case study from an Illegal Shooting Working Group recently formed in Boise, Idaho, USA. There is growing recognition that illegal shooting of raptors is a pressing conservation challenge. Solving this challenge can be facilitated by inclusion of information from multiple fields of study; the approach we outline provides one potential mechanism to address this issue.
Are we working towards global research priorities for management and conservation of sea turtles?
In 2010, an international group of 35 sea turtle researchers refined an initial list of more than 200 research questions into 20 metaquestions that were considered key for management and conservation of sea turtles. These were classified under 5 categories: reproductive biology, biogeography, population ecology, threats and conservation strategies. To obtain a picture of how research is being focused towards these key questions, we undertook a systematic review of the peer-reviewed literature (2014 and 2015) attributing papers to the original 20 questions. In total, we reviewed 605 articles in full and from these 355 (59%) were judged to substantively address the 20 key questions, with others focusing on basic science and monitoring. Progress to answering the 20 questions was not uniform, and there were biases regarding focal turtle species, geographic scope and publication outlet. Whilst it offers some meaningful indications as to effort, quantifying peer-reviewed literature output is obviously not the only, and possibly not the best, metric for understanding progress towards informing key conservation and management goals. Along with the literature review, an international group based on the original project consortium was assigned to critically summarise recent progress towards answering each of the 20 questions. We found that significant research is being expended towards global priorities for management and conservation of sea turtles. Although highly variable, there has been significant progress in all the key questions identified in 2010. Undertaking this critical review has highlighted that it may be timely to undertake one or more new prioritizing exercises. For this to have maximal benefit we make a range of recommendations for its execution. These include a far greater engagement with social sciences, widening the pool of contributors and focussing the questions, perhaps disaggregating ecology and conservation.
Knowledge synthesis of Cape Sable Seaside Sparrow science
This report represents a literature review of science conducted on the Cape Sable Seaside Sparrow ( Ammospiza maritima mirabilis , hereafter “CSSS” or “spar-row”). This information can be used as a foundation for the upcoming Species Status Assessment and for updating the CSSS Recovery Plan. This report focuses on areas of interest relative to CSSS management such as habitat, hydrology, fire, and population estimates. We include peer-reviewed scientific literature, synthesis reports, and some field reports. Many field reports to funding agencies and other documents exist beyond what is reviewed here; however, we include the most relevant documents relative to the focus of CSSS management. All documents reviewed are listed in the References section.
Managing Fire in the Northern Chihuahuan Desert: A Review and Analysis of the Literature
Executive Summary This report began as a literature review (Gebow and Halvorson 2001) conducted for fire planners at Carlsbad Caverns National Park who were seeking information about (1) the natural state of park vegetation, (2) northern Chihuahuan Desert natural fire regimes, and (3) fire effects on park plant species. It is the goal of managers there to continue to refine the wildland and prescribed fire program as they learn more about the ecosystems at the park.The park has a history of grazing and then fire suppression in the 20th century. The current effort revisits questions asked by earlier workers at the park, Walter Kittams and Gary Ahlstrand, who began fire studies in the 1970s. This document addresses ecosystems and historical change to those systems in Chihuahuan Desert areas of southeast Arizona, southern New Mexico, west Texas, or in neighboring regions that share the same plant species. It examines fire literature for situations possibly analogous to those at Carlsbad Caverns. It also includes papers that offer advice on extrapolating future ecological trends from past ones (Swetnam et al. 1999) and on resource management decision-making (Grumbine 1997), and other pieces that address broader aspects of fire or landscape change (Goldman 1994; Marston 1996; Mutch 1994, 1995). These more philosophical works were included in the original review at the park's request and have been retained here because they discuss other issues relevant to fire management. Individual reviews of 35 papers, as requested originally by Carlsbad Caverns, appear in Appendix 1. The results section-summary of key findings-discusses historical changes to plant communities then focuses on burn intervals observed or recommended by workers for particular plant communities. Results from a search of the USDA Forest Service's Fire Effects Information System (www.fs.fed.us/database/feis) are also included in this report, supplemented with information from a review conducted by Ahlstrand (1981b) that included much of his own work. This database contains comprehensive plant species accounts and fire effects data. Entries are available for a number of the dominant species at Carlsbad Caverns, though the information frequently applies to the plants in other parts of their ranges. The literature presents highly variable fire effects and observed/recommended burn intervals for similar plant communities in the northern Chihuahuan Desert region. While local and longer-term fire-effects studies are still needed to guide resource managers, the variability seen in the literature itself translates into a fire management goal. Preserving the irregularity in time and space of fires would likely best replicate 'natural' fire regimes.
Review of literature on the testing of point-velocity current meters
The U.S. Geological Survey is in the process of evaluating point-velocity current meters. As part of this evaluation process, a review of the literature pertaining to the testing of point-velocity current meters was conducted. A listing of current-meter testing found in the literature was compiled and is grouped according to the type of meter tested and the type of test conducted. Meter types included in the review were vertical- and horizontal-axis mechanical current meters and electromagnetic acoustic electronic current meters. Laser current meters are not included in the review because there are no practical laser meter designs for field velocity measurements. The results of the literature review indicated that there has not been a comprehensive testing of the commonly available current meters since the 1920's.
Review and bibliometric analysis of published literature citing data produced by the Gap Analysis Program (GAP)
The Gap Analysis Program (GAP) of the U.S. Geological Survey (USGS) produces geospatial datasets providing information on land cover, predicted species distributions, stewardship (ownership and conservation status), and an analysis dataset which synthesizes the other three datasets. The intent in providing these datasets is to support the conservation of biodiversity. The datasets are made available at no cost. The initial datasets were created at the state level. More recent datasets have been assembled at regional and national levels. GAP entered an agreement with the Policy Analysis and Science Assistance branch of the USGS to conduct an evaluation to describe the effect that using GAP data has on those who utilize the datasets (GAP users). The evaluation project included multiple components: a discussion regarding use of GAP data conducted with participants at a GAP conference, a literature review of publications that cited use of GAP data, and a survey of GAP users. The findings of the published literature search were used to identify topics to include on the survey. This report summarizes the literature search, the characteristics of the resulting set of publications, the emergent themes from statements made regarding GAP data, and a bibliometric analysis of the publications. We cannot claim that this list includes all publications that have used GAP data. Given the time lapse that is common in the publishing process, more recent datasets may be cited less frequently in this list of publications. Reports or products that used GAP data may be produced but never published in print or released online. In that case, our search strategies would not have located those reports. Authors may have used GAP data but failed to cite it in such a way that the search strategies we used would have located those publications. These are common issues when using a literature search as part of an evaluation project. Although the final list of publications we identified is not comprehensive, this set of publications can be considered a sufficient sample of those citing GAP data and suitable for the descriptive analyses we conducted.
Preliminary hydrogeologic assessment and study plan for a regional ground-water resource investigation of the Blue Ridge and Piedmont provinces of North Carolina
Prolonged drought, allocation of surface-water flow, and increased demands on ground-water supplies resulting from population growth are focuses for the need to evaluate ground-water resources in the Blue Ridge and Piedmont Provinces of North Carolina. Urbanization and certain aspects of agricultural production also have caused increased concerns about protecting the quality of ground water in this region. More than 75 percent of the State's population resides in the Blue Ridge and Piedmont Provinces in an area that covers 30,544 square miles and 65 counties. Between 1940 and 2000, the population in the Piedmont and Blue Ridge Provinces increased from 2.66 to 6.11 million; most of this increase occurred in the Piedmont. Of the total population, an estimated 1.97 million people, or 32.3 percent (based on the 1990 census), relied on ground water for a variety of uses, including commercial, industrial, and most importantly, potable supplies. Ground water in the Blue Ridge and Piedmont traditionally has not been considered as a source for large supplies, primarily because of readily available and seemingly limitless surface-water supplies, and the perception that ground water in the Blue Ridge and Piedmont Provinces occurs in a complex, generally heterogeneous geologic environment. Some reluctance to use ground water for large supplies derives from the reputation of aquifers in these provinces for producing low yields to wells, and the few high-yield wells that are drilled seem to be scattered in areas distant from where they are needed. Because the aquifers in these provinces are shallow, they also are susceptible to contamination by activities on the land surface. In response to these issues, the North Carolina Legislature supported the creation of a Resource Evaluation Program to ensure the long-term availability, sustainability, and quality of ground water in the State. As part of the Resource Evaluation Program, the North Carolina Division of Water Quality, Groundwater Section, in cooperation with the U.S. Geological Survey, initiated a multiyear study of ground water in the Blue Ridge and Piedmont Provinces. The study began in 1999. Most of the study area is underlain by a complex, two-part, regolith-fractured crystalline rock aquifer system. Thickness of the regolith throughout the study area is highly variable and ranges from 0 to more than 150 feet. The regolith consists of an unconsolidated or semiconsolidated mixture of clay and fragmental material ranging in grain size from silt to boulders. Because porosities range from 35 to 55 percent, the regolith provides the bulk of the water storage within the Blue Ridge and Piedmont ground-water system. At the base of the regolith is the transition zone where saprolite grades into unweathered bedrock. The transition zone has been identified as a potential conduit for rapid ground-water flow. If this is the case, the transition zone also may serve as a conduit for rapid movement of contaminants to nearby wells or to streams with channels that cut into 1 U.S. Geological Survey, Raleigh, North Carolina. 2 North Carolina Department of Environment and Natural Resources, Division of Water Quality, Groundwater Section. or through the transition zone. How rapidly a contaminant moves through the system largely may be a function of the characteristics of the transition zone. The transition zone is one of several topics identified during the literature review and data synthesis, for which there is a deficiency in data and understanding of the processes involved in the movement of ground water to surface water. Because the Blue Ridge and Piedmont study area is so large, and the hydrogeology diverse, it is not feasible to study all of the area in detail. A more feasible approach is to select areas that are most representative of the land use, geology, and hydrology to obtain an understanding of the hydrologic processes in the selected areas, and transfer the knowledge from these local "type areas" to similar regional hydrogeologic areas. For the purpose of this study, the term "type area" applies to a 10- to 100-square mile area within a hydrogeologic terrane where information is sufficient to develop and test a concept of ground-water flow by using analytical or numerical methods that can be validated by field measurements. Ideally, these type areas are selected to be representative of the flow system that is present wherever a particular hydrogeologic terrane is present. This report consists of two basic parts. The first part describes the results of a comprehensive review and synthesis of information and literature that provides the basic background for the study. This includes current (2002) knowledge regarding general geology and the hydrogeologic framework of the fractured-rock aquifer system that underlies the Blue Ridge and Piedmont Provinces. In spite of the quantity of information identified during the literature review and the amount of past work that has been documented, there are still research needs to be met. The second part of the report describes State ground-water issues and problems, available data, and data deficiencies. It also describes the design and implementation of efforts to characterize ground-water quality and to quantify factors that influence the movement and availability of ground water in the hydrogeologic terranes characterized by (1) massive or foliated crystalline rocks overlain by thick regolith and (2) massive or foliated crystalline rocks overlain by thin regolith. As of September 2001, seven sites had been identified as potential study sites to be used to characterize the hydrogeology and water quality of ype areas considered representative of the larger terranes. Detailed geologic mapping, core drilling, well installation, and surface and borehole geophysical surveys are in progress at four of the sites.
Predicting secretive species distribution using Bayesian networks with and without expert elicitation: A case study incorporating double-blind peer review
1. Species that are secretive, imperilled and consequently data deficient often re-quire conservation action despite limited available information. In such scenarios, Bayesian networks (BNs) offer a versatile and intuitive approach for utilizing various information sources, including literature reviews, community science data sets and expert knowledge. Although it has been suggested that peer review be incorporated during expert elicitations in a BN modelling context, little information exists about how to implement this approach or about how models constructed using this approach perform. 2. We documented a double-blind peer review approach for expert elicitation in a BN modelling context. Further, we compared BN models that were generated by experts who engaged in this peer-review process (PRBNs) to those that were generated by a single expert whose knowledge was supplemented only by a literature review (LRBNs). These comparisons were based on the ability to predict the occurrence (via community science and satellite telemetry data) of a secretive and data deficient species, the King Rail ( Rallus elegans ), throughout a large region. 3. We found that the LRBNs tended to predict King Rail occurrence as well as, or better than, the PRBNs. The LRBNs that we evaluated provided more consistent predictions across our study area. However, preliminary data suggest that the PRBNs may better distinguish between locations of focal and non-focal species within smaller regions. 4. Practical implication. Our framework for utilizing double-blind peer review could serve as a useful guide and have practical implications for incorporating expert knowledge in BN models. Further, our model comparison case study suggests that, in some contexts, a single expert who uses a literature review to inform the creation of BN models may be able to accurately predict the occurrence of a secretive and data-deficient focal species. Taken together, this information could help ecologists decide when a double-blind peer review approach to expert elicitation is necessary and how to implement this approach in a BN modelling context.
Occurrence, resource use, and demography of the common raven in North America: A research synthesis
We reviewed the scientific literature to inventory existing studies of common raven ( Corvus corax ; raven) ecology in western North America. We conducted an intial literature review between June 2015 and March 2018. Prior to completing our review, we revisited the published literature for any additional relevant studies in July 2021. Our goal was to identify knowledge gaps and to synthesize the current understanding of environmental features that may support raven populations that pose general threats to biodiversity and sensitive species in particular. We focused our review on studies with direct conservation applications related to 3 processes of raven ecology: occurrence, resource use, and demography. We identified covariates that researchers associated with these processes of raven ecology, and we also quantified the geographic distribution of studies. Our review identified 54 studies, with an increasing number of studies published per decade and a geographic bias characterized by more studies conducted in the Mojave and Columbia Plateau ecoregions than elsewhere. Most studies (44) reported on a single ecological process, but 10 studies reported on multiple ecological processes. Results related to raven occurrence appeared 31 times; demographic results appeared 21 times; and resource use was reported 17 times. We also identified 13 explanatory covariates regularly invoked to explain variation in raven ecological processes. Greater attention was given to covariates including vegetation land cover, human settlement, recreation, and linear rights-of-ways than were used to explain variation in ecological processes. Most demographic studies investigated raven reproduction exclusively, but a small number of studies considered raven survival exclusively or in combination with reproduction. Along with a detailed summary of individual studies provided as an appendix, we intend for our findings to serve as a reference and to help identify future research priorities.
The elephant in the lab (and field): Contamination in aquatic environmental DNA studies
The rapid evolution of environmental (e)DNA methods has resulted in knowledge gaps in smaller, yet critical details like proper use of negative controls to detect contamination. Detecting contamination is vital for confident use of eDNA results in decision-making. We conducted two literature reviews to summarize (a) the types of quality assurance measures taken to detect contamination of eDNA samples from aquatic environments, (b) the occurrence, frequency and attribution (i.e., putative sources) of unexpected amplification in these quality assurance samples, and (c) how results were interpreted when contamination occurred. In the first literature review, we reviewed 156 papers and found that 91% of targeted and 73% of metabarcoding eDNA studies reported inclusion of negative controls within their workflows. However, a large percentage of targeted (49%) and metabarcoding (80%) studies only reported negative controls for laboratory procedures, so results were potentially blind to field contamination. Many of the 156 studies did not provide critical methodological information and amplification results of negative controls. In our second literature review, we reviewed 695 papers and found that 30 targeted and 32 metabarcoding eDNA studies reported amplification of negative controls. This amplification occurred at similar proportions for field and lab workflow steps in targeted and metabarcoding studies. These studies most frequently used amplified negative controls to delimit a detection threshold above which is considered significant or provided rationale for why the unexpected amplifications did not affect results. In summary, we found that there has been minimal convergence over time on negative control implementation, methods, and interpretation, which suggests that increased rigor in these smaller, yet critical details remains an outstanding need. We conclude our review by highlighting several studies that have developed especially effective quality assurance, control and mitigation methods.
Pecos River Basin salinity assessment, Santa Rosa Lake, New Mexico, to the confluence of the Pecos River and the Rio Grande, Texas, 2015
The elevated salinity of the Pecos River throughout much of its length is of paramount concern to water users and water managers. Dissolved-solids concentrations in the Pecos River exceed 3,000 milligrams per liter in many of its reaches in the study area, from Santa Rosa Lake, New Mexico, to the confluence of the Pecos River with the Rio Grande, Texas. The salinity of the Pecos River increases downstream and affects the availability of useable water in the Pecos River Basin. In this report, “salinity” and “dissolved-solids concentration” are considered synonymous; both terms are used to refer to the total ionic concentration of dissolved minerals in water. The sources of salinity in the Pecos River Basin are natural (geologic) and anthropogenic, including but not limited to groundwater discharge, springs, and irrigation return flows. Previous studies in the Pecos River Basin were project specific and designed to address salinity issues in specific parts of the basin; therefore, in 2015, the U.S. Geological Survey in cooperation with the U.S. Army Corps of Engineers, New Mexico Interstate Stream Commission, Texas Commission on Environmental Quality, and Texas Water Development Board assessed the major sources of salinity throughout the extent of the basin where elevated salinity in the Pecos River is well documented (that is, in the drainage area of the Pecos River from Santa Rosa Lake to the confluence of the Pecos River and the Rio Grande). The goal was to gain a better understanding of how specific areas might be contributing to the elevated salinity in the Pecos River and how salinity of the Pecos River has changed over time. This assessment includes a literature review and compilation of previously published salinity-related data, which guided the collection of additional water-quality samples and streamflow gain-loss measurements. Differences in water quality of surface-water and groundwater samples, streamflow measurements, and geophysical data were assessed to gain new insights regarding sources of salinity in the Pecos River Basin and a more detailed assessment of potential areas of elevated salinity in the basin. The datasets compiled for this assessment are available in a companion data release. The literature review identified several potential sources of salinity inputs to the Pecos River in New Mexico and Texas. In New Mexico, sources of salinity inputs included sinkhole springs discharging into El Rito Creek, the Bitter Lake National Wildlife Refuge inflow to the Pecos River, inflow from the Rio Hondo, including the main channel and a restored channel at the Bitter Lake National Wildlife Refuge referred to as the “Rio Hondo spring channel,” the outflow from Lea Lake at Bottomless Lakes State Park, and the Malaga Bend region of the Pecos River. In Texas, sources of salinity inputs included Salt Creek downstream from Red Bluff Reservoir and the area near the Horsehead Crossing ford on the Pecos River. The compilation of historical water-quality data revealed a lack of consistent sampling of the same constituents at the same sites along the main stem of the Pecos River, which results in data gaps that hinder the ability to effectively analyze long-term changes in water quality that may help with the understanding of how salinity in the Pecos River has changed over time and identifying the sources of salinity in the Pecos River Basin. To help fill these data gaps, water-quality and streamflow data were collected in the study area in February 2015 by the U.S. Geological Survey. Historical water-quality data and newly collected data from February 2015 were evaluated for selected major-ion concentrations, dissolved-solids concentrations, and deuterium, oxygen, and strontium isotopes. Analysis of the data indicated several areas of increasing salinity in the Pecos River. Most notable increases were in two subreaches of the river, between Acme, N. Mex., and Artesia, N. Mex., and between Orla, Tex., and Grandfalls, Tex. Increasing sodium and chloride concentrations from Acme to Artesia coincided with changes in isotopic ratios within the Pecos River Basin. Changes in isotopic ratios in this reach indicate a likely inflow from an isotopically different source of water compared to the water in the main stem of the Pecos River, such as groundwater inflow, inflow from surface-water features distinct from the main stem of the Pecos River, or both. In the subreach between Orla and Grandfalls, an increase in dissolved-solids concentrations was observed along with a shift in isotope values, indicating that neither evaporative processes in Red Bluff Reservoir nor inflow from Salt Creek likely solely influences the salinity of the Pecos River in this subreach. The highest dissolved-solids concentrations in the Pecos River Basin were measured downstream from Grandfalls, where dissolved-solids concentrations are greater than 16,000 milligrams per liter near Iraan, Tex. Changes in isotopic values (deuterium, oxygen, and strontium) indicate mixing of different waters at several areas along the main stem of the Pecos River. The spatial distribution of the areas of interest from the literature review and the water-quality data are available in the companion data release.
Evidence for interactions among environmental stressors in the Laurentian Great Lakes
Co-occurrence of environmental stressors is ubiquitous in ecosystems, but cumulative effects are difficult to predict for effective indicator development. Individual stressors can amplify (synergies) or lessen (antagonisms) each other's impacts or have fully independent effects (additive). Here we use the Laurentian Great Lakes, where a multitude of stressors have been studied for decades, as a case study for considering insights from both a systematic literature review and an expert elicitation (or structured expert judgment) to identify stressor interactions. In our literature search for pairs of stressors and interaction-related keywords, relatively few studies (9%, or 6/65) supported additive interactions with independent stressor effects. Instead, both antagonisms (42%, or 27/65) and synergies (49%, or 32/65) were common. We found substantial evidence for interactions of invasive dreissenid mussels with nutrient loading and between pairs of invasive species (predominantly dreissenids × round goby), yet both sets of records included mixtures of synergies and antagonisms. Complete quantification of individual and joint effects of stressors was rare, but effect sizes for dreissenid mussels × nutrient loading supported an antagonism. Our expert elicitation included discussion in focus groups and a follow-up survey. This process highlighted the potential for synergies of nutrient loading with dreissenid mussels and climate change as seen from the literature review. The elicitation also identified additional potential interactions less explored in the literature, particularly synergies of nutrient loading with hypoxia and wetland loss. To stimulate future research, we built a conceptual model describing interactions among dreissenid mussels, climate change, and nutrient loading. Our case study illustrates the value of considering results from both elicitations and systematic reviews to overcome data limitations. The simultaneous occurrence of synergies and antagonisms in a single ecosystem underscores the challenge of predicting the cumulative effects of stressors to guide indicator development and other management and restoration decisions.