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At least 55 records · Page 3Linked to original sources
USGS2007

Quantifying urban intensity in drainage basins for assessing stream ecological conditions

Three investigations are underway, as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program, to study the relation between varying levels of urban intensity in drainage basins and in-stream water quality, measured by physical, chemical, and biological factors. These studies are being conducted in the vicinities of Boston (Massachusetts), Salt Lake City (Utah), and Birmingham (Alabama), areas where rapid urbanization is occurring. For each study, water quality will be sampled in approximately 30 drainage basins that represent a gradient of urban intensity. This paper focuses on the methods used to characterize and select the basins used in the studies. It presents a methodology for limiting the variability of natural landscape characteristics in the potential study drainage basins and for ranking the magnitude of human influence, or urbanization, based on land cover, infrastructure, and socioeconomic data in potential study basins. Basin characterization efforts associated with the Boston study are described for illustrative purposes.

Alabama, Massachusetts, Utah↗
USGS2009

Shallow water processes govern system-wide phytoplankton bloom dynamics: A modeling study

A pseudo-two-dimensional numerical model of estuarine phytoplankton growth and consumption, vertical turbulent mixing, and idealized cross-estuary transport was developed and applied to South San Francisco Bay. This estuary has two bathymetrically distinct habitat types (deep channel, shallow shoal) and associated differences in local net rates of phytoplankton growth and consumption, as well as differences in the water column's tendency to stratify. Because many physical and biological time scales relevant to algal population dynamics decrease with decreasing depth, process rates can be especially fast in the shallow water. We used the model to explore the potential significance of hydrodynamic connectivity between a channel and shoal and whether lateral transport can allow physical or biological processes (e.g. stratification, benthic grazing, light attenuation) in one sub-region to control phytoplankton biomass and bloom development in the adjacent sub-region. Model results for South San Francisco Bay suggest that lateral transport from a productive shoal can result in phytoplankton biomass accumulation in an adjacent deep, unproductive channel. The model further suggests that turbidity and benthic grazing in the shoal can control the occurrence of a bloom system-wide; whereas, turbidity, benthic grazing, and vertical density stratification in the channel are likely to only control local bloom occurrence or modify system-wide bloom magnitude. Measurements from a related field program are generally consistent with model-derived conclusions.

Journal of Marine Systems↗
USGS2003

Conservation assessment of current and proposed nature reserves of Tamaulipas State, Mexico

The Mexican state of Tamaulipas located in the northeastern portion of the country currently has five state nature reserves covering slightly less than 3% of its land area. These reserves were established for a variety of reasons, many unrelated to the protection of biological resources. In 2000 in response to a growing concern about the lack of organized conservation reserve planning to protect the important biological and physical features of Mexico, the Mexican Commission for Knowledge and Use of Biodiversity (CONABIO) proposed 13 new terrestrial reserves for Tamaulipas. If established these new reserves would increase the proportion of terrestrial protected lands in the state to over 21%. We compiled a geographic information system (GIS) using existing digital thematic maps of physical and biological features to examine how the existing and proposed reserves might serve to protect the biodiversity and physical features of the state. We found that most of the existing protected sites occur in areas with elevations > 1000-2000 m with temperate climate and dominated by pine forest, oak forest, and cloud forest vegetation cover types. The state's dominant biotic region - low elevation coastal plain with tropical and arid climate types and xeric scrub vegetation - is disproportionately underrepresented in the current reserve system. The creation of the proposed areas would substantially increase the protection of mid and high elevation lands. The largest gap in the protected lands network would be low elevation, level, coastal lands.

Tamaulipas↗
USGS1992

Assessment of sediment contamination at Great Lakes Areas of Concern: the ARCS Program Toxicity-Chemistry Work Group strategy

In response to a mandate in Section 118(c)(3) of the Water Quality Act of 1987, a program called Assessment and Remediation of Contaminated Sediments (ARCS) was established. Four technical work groups were formed. This paper details the research strategy of the Toxicity-Chemistry Work Group. The Work Group's general objectives are to develop survey methods and to map the degree of contamination and toxicity in bottom sediments at three study areas, which will serve as guidance for future surveys at other locations. A related objective is to use the data base that will be generated to calculate sediment quality concentrations by several methods. The information needed to achieve these goals will be collected in a series of field surveys at three areas: Saginaw Bay (MI), Grand Calumet River (IN), and Buffalo River (NY). Assessments of the extent of contamination and potential adverse effects of contaminants in sediment at each of these locations will be conducted by collecting samples for physical characterization, toxicity testing, mutagenicity testing, chemical analyses, and fish bioaccumulation assays. Fish populations will be assessed for tumors and external abnormalities, and benthic community structure will be analyzed. A mapping approach will use low-cost indicator parameters at a large number of stations, and will extrapolate by correlation from traditional chemical and biological studies at a smaller number of locations. Sediment toxicity testing includes elutriate, pore water and whole sediment bioassays in a three-tiered framework. In addition to the regular series of toxicity tests at primary mater stations, some stations are selected for a more extensive suite of tests.

Journal of Aquatic Ecosystem Health↗
USGS2008

Simulated fate and transport of metolachlor in the unsaturated zone, Maryland, USA

An unsaturated-zone transport model was used to examine the transport and fate of metolachlor applied to an agricultural site in Maryland, USA. The study site was instrumented to collect data on soil-water content, soil-water potential, ground water levels, major ions, pesticides, and nutrients from the unsaturated zone during 2002-2004. The data set was enhanced with site-specific information describing weather, soils, and agricultural practices. The Root Zone Water Quality Model was used to simulate physical, chemical, and biological processes occurring in the unsaturated zone. Model calibration to bromide tracer concentrations indicated flow occurred through the soil matix. Simulated recharge rates were within the measured range of values. The pesticide transport model was calibrated to the intensive data collection period (2002-2004), and the calibrated model was then used to simulate the period 1984 through 2004 to examine the impact of sustained agricultural management practices on the concentrations of metolachlor and its degradates at the study site. Simulation results indicated that metolachlor degrades rapidly in the root zone but that the degradates are transported to depth in measurable quantities. Simulations indicated that degradate transport is strongly related to the duration of sustained use of metolachlor and the extent of biodegradation.

Maryland↗
USGS2023

Large-scale variation in lakebed properties interpreted from single-beam sonar in two Laurentian Great Lakes

Acoustic seabed classification (ASC) is an important method for understanding landscape-level physical and biological patterns in the aquatic environment. Bottom habitats in the Laurentian Great Lakes are poorly mapped to date, and will require a variety of contributors and data sources to complete. We repurposed a long-term split-beam echosounder dataset gathered for purposes of fisheries assessment to estimate lakebed properties utilizing unsupervised classification of echo return data. We interpreted first echo properties representing lakebed hardness and roughness to define and map three statistically supported lakebed classes revealed through cluster analysis. Our results indicate coherent and logical class boundaries and suggest that the dataset has promise for expanded use in ASC. To improve inferences using repeated measures, future work should focus on collecting ground truth information for areas previously surveyed and on collecting concurrent ground truth information when sampling acoustic data moving forward.

Michigan, Ontario, Wisconsin↗
USGS2015

Transplantation of storm-generated coral fragments to enhance Caribbean coral reefs: A successful method but not a solution

In response to dramatic losses of reef-building corals and ongoing lack of recovery, a small-scale coral transplant project was initiated in the Caribbean (U.S. Virgin Islands) in 1999 and was followed for 12 years. The primary objectives were to (1) identify a source of coral colonies for transplantation that would not result in damage to reefs, (2) test the feasibility of transplanting storm-generated coral fragments, and (3) develop a simple, inexpensive method for transplanting fragments that could be conducted by the local community. The ultimate goal was to enhance abundance of threatened reef-building species on local reefs. Storm-produced coral fragments of two threatened reef-building species [ Acropora palmata and A. cervicornis (Acroporidae)] and another fast-growing species [ Porites porites (Poritidae)] were collected from environments hostile to coral fragment survival and transplanted to degraded reefs. Inert nylon cable ties were used to attach transplanted coral fragments to dead coral substrate. Survival of 75 reference colonies and 60 transplants was assessed over 12 years. Only 9% of colonies were alive after 12 years: no A. cervicornis ; 3% of A. palmata transplants and 18% of reference colonies; and 13% of P. porites transplants and 7% of reference colonies. Mortality rates for all species were high and were similar for transplant and reference colonies. Physical dislodgement resulted in the loss of 56% of colonies, whereas 35% died in place. Only A. palmata showed a difference between transplant and reference colony survival and that was in the first year only. Location was a factor in survival only for A. palmata reference colonies and after year 10. Even though the tested methods and concepts were proven effective in the field over the 12-year study, they do not present a solution. No coral conservation strategy will be effective until underlying intrinsic and/or extrinsic factors driving high mortality rates are understood and mitigated or eliminated. Rev. Biol. Trop. 60 (Suppl. 1): 59-70. Epub 2012 March 01.

Revista de Biología Tropical: International Journa↗
USGS2011

Continuous salinity and temperature data from San Francisco Estuary, 1982-2002: Trends and the salinity-freshwater inflow relationship

The U.S. Geological Survey and other federal and state agencies have been collecting continuous temperature and salinity data, two critical estuarine habitat variables, throughout San Francisco estuary for over two decades. Although this dynamic, highly variable system has been well studied, many questions remain relating to the effects of freshwater inflow and other physical and biological linkages. This study examines up to 20 years of publically available, continuous temperature and salinity data from 10 different San Francisco Bay stations to identify trends in temperature and salinity and quantify the salinity–freshwater inflow relationship. Several trends in the salinity and temperature records were identified, although the high degree of daily and interannual variability confounds the analysis. In addition, freshwater inflow to the estuary has a range of effects on salinity from −0.0020 to −0.0096 (m 3 s −1 ) −1 discharge, depending on location in the estuary and the timescale of analyzed data. Finally, we documented that changes in freshwater inflow to the estuary that are within the range of typical management actions can affect bay-wide salinities by 0.6–1.4. This study reinforces the idea that multidecadal records are needed to identify trends from decadal changes in water management and climate and, therefore, are extremely valuable.

California↗
USGS2015

Final project memorandum: sea-level rise modeling handbook: resource guide for resource managers, engineers, and scientists

Coastal wetlands of the Southeastern United States are undergoing retreat and migration from increasing tidal inundation and saltwater intrusion attributed to climate variability and sea-level rise. Much of the literature describing potential sea-level rise projections and modeling predictions are found in peer-reviewed academic journals or government technical reports largely suited to reading by other Ph.D. scientists who are more familiar or engaged in the climate change debate. Various sea-level rise and coastal wetland models have been developed and applied of different designs and scales of spatial and temporal complexity for predicting habitat and environmental change that have not heretofore been synthesized to aid natural resource managers of their utility and limitations. Training sessions were conducted with Federal land managers with U.S. Fish and Wildlife Service, National Park Service, and NOAA National Estuarine Research Reserves as well as state partners and nongovernmental organizations across the northern Gulf Coast from Florida to Texas to educate and to evaluate user needs and understanding of concepts, data, and modeling tools for projecting sea-level rise and its impact on coastal habitats and wildlife. As a result, this handbook was constructed from these training and feedback sessions with coastal managers and biologists of published decision-support tools and simulation models for sea-level rise and climate change assessments. A simplified tabular context was developed listing the various kinds of decision-support tools and ecological models along with criteria to distinguish the source, scale, and quality of information input and geographic data sets, physical and biological constraints and relationships, datum characteristics of water and land elevation components, utility options for setting sea-level rise and climate change scenarios, and ease or difficulty of storing, displaying, or interpreting model output. The handbook is designed to be a primer to understanding sea-level rise and a practical synthesis of the current state of knowledge and modeling tools as a resource guide for DOl land management needs and facilitating Landscape Conservation Cooperative (LCC) research and conservation initiatives.

Conference Paper↗
USGS2011

Assessing first-order emulator inference for physical parameters in nonlinear mechanistic models

We present an approach for estimating physical parameters in nonlinear models that relies on an approximation to the mechanistic model itself for computational efficiency. The proposed methodology is validated and applied in two different modeling scenarios: (a) Simulation and (b) lower trophic level ocean ecosystem model. The approach we develop relies on the ability to predict right singular vectors (resulting from a decomposition of computer model experimental output) based on the computer model input and an experimental set of parameters. Critically, we model the right singular vectors in terms of the model parameters via a nonlinear statistical model. Specifically, we focus our attention on first-order models of these right singular vectors rather than the second-order (covariance) structure.

Journal of Agricultural, Biological, and Environme↗
USGS2002

Comparison of subyearling fall chinook salmon's use of riprap revetments and unaltered habitats in Lake Wallula of the Columbia river

Subyearling fall chinook salmon's Oncorhynchus tshawytscha use of unaltered and riprap habitats in Lake Wallula of the Columbia River was determined with point abundance data collected by electrofishing in May 1994 and 1995. We documented the presence or absence of subyearlings at 277 sample sites and collected physical habitat information at each site. Based on logistic regression, we found that the probability of fish presence was greater in unaltered shoreline habitats than in riprap habitats. Substrate size was the most important factor in determining fish presence, with dominant substrates larger than 256 mm having the lowest probability of fish presence. Water velocity, also included in our model due to its biological importance, was not a significant factor affecting presence or absence (P = 0.1102). The correct prediction rate of fish presence or absence in our sample sites using cross validation was 67%. Our model showed that substrate was the most important factor determining subyearling habitat use, but the model did not include other habitat variables known to be important to subyearlings in more diverse systems. We suggest that resource managers consider alternative methods of bank stabilization that are compatible with the habitat requirements of the fish that use them.

Washington↗
USGS2007

TiO 2 as a photocatalyst for control of the aquatic invasive alga, Cladophora, under natural and artificial light

Cladophora, a nuisance and invasive, filamentous algae (Chlorophyta), massively accumulates along the shores of the lower Great Lakes each summer causing great economic damage and compromising recreational opportunity and perhaps public health. In vitro experiments showed that Cladophora samples were physically and biologically degraded when subjected to TiO 2 -mediated photocatalysis. For the most successful photocatalytic process, TiO 2 was immobilized on a glass surface and used in combination with either sunlight or artificial UV light. The loss of vital algal pigments was monitored using UV–vis spectrophotometry, and cell structural changes were determined by microscopic observation. Cladophora, in the presence of TiO 2 -covered glass beads, experienced a loss of chloroplast pigments after 2 h of UV lamp light irradiation. In a separate experiment, sunlight exposure over 4 days (∼24 h) resulted in the complete oxidative degradation of the green chloroplast pigments, verified by the UV spectra of the algal extracts. These results suggest that TiO 2 , mobilized on sunlit silicates may be useful in controlling growth and survival of this alga in the Great Lakes, thus mitigating many of the economic, aesthetic ecological impacts of this invasive alga.

Journal of Photochemistry and Photobiology A: Chem↗
USGS2002

Prioritizing conservation potential of arid-land montane natural springs and associated riparian areas

Using inventory data and input from natural resource professionals, we developed a classification system that categorizes conservation potential for montane natural springs. This system contains 18 classes based on the presence of a riparian patch, wetland species, surface water, and evidence of human activity. We measured physical and biological components of 276 montane springs in the Oscura Mountains above 1450 m and the San Andres Mountains above 1300 m in southern New Mexico. Two of the 18 classes were not represented during the inventory, indicating the system applies to conditions beyond the montane springs in our study area. The class type observed most often (73 springs) had a riparian patch, perennial surface water, and human evidence. We assessed our system in relation to 13 other wetland and riparian classification systems regarding approach, area of applicability, intended users, validation, ease of use, and examination of system response. Our classification can be used to rapidly assess priority of conservation potential for isolated riparian sites, especially springs, in arid landscapes. We recommend (1) including this classification in conservation planning, (2) removing deleterious structures from high-priority sites, and (3) assessing efficiency and use of this classification scheme elsewhere. ?? 2002 Elsevier Science Ltd.

Journal of Arid Environments↗
USGS2012

Structure of marine predator and prey communities along environmental gradients in a glaciated fjord

Spatial patterns of marine predator communities are influenced to varying degrees by prey distribution and environmental gradients. We examined physical and biological attributes of an estuarine fjord with strong glacier influence to determine the factors that most influence the structure of predator and prey communities. Our results suggest that some species, such as walleye pollock ( Theragra chalcogramma ), black-legged kittiwake ( Rissa tridactyla ), and glaucous-winged gull ( Larus glaucescens ), were widely distributed across environmental gradients, indicating less specialization, whereas species such as capelin ( Mallotus villosus ), harbor seal ( Phoca vitulina ), and Kittlitz's murrelet ( Brachyramphus brevirostris ) appeared to have more specialized habitat requirements related to glacial influence. We found that upper trophic level communities were well correlated with their mid trophic level prey community, but strong physical gradients in photic depth, temperature, and nutrients played an important role in community structure as well. Mid-trophic level forage fish communities were correlated with the physical gradients more closely than upper trophic levels were, and they showed strong affinity to tidewater glaciers. Silica was closely correlated with the distribution of fish communities, the mechanisms of which deserve further study.

Alaska↗
USGS1998

Instability of development and fractal architecture in dryland plants as an index of grazing pressure

Developmental instability has been used to monitor the well-being of natural populations exposed to physical, chemical and biological stressors. Here, we use developmental instability to assess the impact of grazing on Chrysothamnus greenii and Seriphidium novum shrubs, and Oryzopsis hymenoides grass, common in the arid intermountain west of the U.S.A. Statistical noise in allometric relations was used as an indicator of developmental instability arising from grazing-induced stress. Unpalatable species that are not grazed ( Chrysothamnus greenii ) or species that are dormant during the winter–spring grazing period ( Oryzopsis hymenoides ) show lower allometric variability under high grazing pressure. Palatable species ( Seriphidium novum ) exhibit high developmental instability under low and high grazing pressure. Grazing pressure imposed by presumably co-adapted wild herbivores enhances developmental stability in species habituated to moderate grazing, like Oryzopsis hymenoides , but stresses plants such as Chrysothamnus greenii that prefer disturbed environments. These grazing effects are probably due to the impact grazing has on competitive relationships and not to the direct action of the herbivore on the plants.

Journal of Arid Environments↗
USGS2019

Estimating spatial–temporal differences in Chinook salmon outmigration survival with habitat- and predation-related covariates

Low survival rates of Chinook salmon ( Oncorhynchus tshawytscha ) smolts in California’s Central Valley have been attributed to multiple biological and physical factors, but it is not clear which factors have the largest impact. We used 5 years of acoustic telemetry data for 1709 late-fall Chinook salmon smolts to evaluate the effect of habitat- and predation-related covariates on outmigration survival through the Sacramento River. Using a Cormack–Jolly–Seber mark–recapture model, we estimated survival rates both as a function of covariates (covariate model) and as a function of river location and release year (spatial–temporal model). Our covariate model was overwhelmingly supported as the preferred model based on model selection criteria, suggesting the covariates adequately replicated spatial and temporal patterns in smolt survival. The covariates in the selected model included individual fish covariates, habitat-specific covariates, and temporally variable physical conditions. The most important covariate affecting salmon survival was flow. We describe the importance of these parameters in the context of juvenile salmon predation risk and suggest that additional research on predator distribution and density could improve model estimates.

California↗
USGS1993

Coupled effects of vertical mixing and benthic grazing on phytoplankton populations in shallow, turbid estuaries

Coastal ocean waters tend to have very different patterns of phytoplankton biomass variability from the open ocean, and the connections between physical variability and phytoplankton bloom dynamics are less well established for these shallow systems. Predictions of biological responses to physical variability in these environments is inherently difficult because the recurrent seasonal patterns of mixing are complicated by aperiodic fluctuations in river discharge and the high-frequency components of tidal variability. We might expect, then, less predictable and more complex bloom dynamics in these shallow coastal systems compared with the open ocean. Given this complex and dynamic physical environment, can we develop a quantitative framework to define the physical regimes necessary for bloom inception, and can we identify the important mechanisms of physical-biological coupling that lead to the initiation and termination of blooms in estuaries and shallow coastal waters? Numerical modeling provides one approach to address these questions. Here we present results of simulation experiments with a refined version of Cloern's (1991) model in which mixing processes are treated more realistically to reflect the dynamic nature of turbulence generation in estuaries. We investigated several simple models for the turbulent mixing coefficient. We found that the addition of diurnal tidal variation to Cloern's model greatly reduces biomass growth indicating that variations of mixing on the time scale of hours are crucial. Furthermore, we found that for conditions representative of South San Francisco Bay, numerical simulations only allowed for bloom development when the water column was stratified and when minimal mixing was prescribed in the upper layer. Stratification, however, itself is not sufficient to ensure that a bloom will develop: minimal wind stirring is a further prerequisite to bloom development in shallow turbid estuaries with abundant populations of benthic suspension feeders.

Journal of Marine Research↗
USGS2010

Quantifying restoration success and recovery in a metal-polluted stream: A 17-year assessment of physicochemical and biological responses

Evaluating the effectiveness of stream restoration is often challenging because of the lack of pre-treatment data, narrow focus on physicochemical measures and insufficient post-restoration monitoring. Even when these fundamental elements are present, quantifying restoration success is difficult because of the challenges associated with distinguishing treatment effects from seasonal variation, episodic events and long-term climatic changes.2. We report results of one of the most comprehensive and continuous records of physical, chemical and biological data available to assess restoration success for a stream ecosystem in North America. Over a 17 year period we measured seasonal and annual changes in metal concentrations, physicochemical characteristics, macroinvertebrate communities, and brown trout Salmo trutta populations in the Arkansas River, a metal-contaminated stream in Colorado, USA.3. Although we observed significant improvements in water quality after treatment, the effectiveness of restoration varied temporally, spatially and among biological response variables. The fastest recovery was observed at stations where restoration eliminated point sources of metal contamination. Recovery of macroinvertebrates was significantly delayed at some stations because of residual sediment contamination and because extreme seasonal and episodic variation in metal concentrations prevented recolonization by sensitive species. Synthesis and applications. Because recovery trajectories after the removal of a stressor are often complex or nonlinear, long-term studies are necessary to assess restoration success within the context of episodic events and changes in regional climate. The observed variation in recovery among chemical and biological endpoints highlights the importance of developing objective criteria to assess restoration success. Although the rapid response of macroinvertebrates to reduced metal concentrations is encouraging, we have previously demonstrated that benthic communities from the Arkansas River remained susceptible to other novel anthropogenic stressors. We suggest that the resistance or resilience of benthic macroinvertebrate communities to novel stressors may be effective indicators of restoration success that can account for the non-additive (e.g. synergistic) nature of compound perturbations. ?? 2010 The Authors. Journal compilation ?? 2010 British Ecological Society.

Journal of Applied Ecology↗