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USGS1998

Transport, behavior, and fate of volatile organic compounds in streams

Professional Paper↗

USGS2000

Transport, behavior, and fate of volatile organic compounds in streams

Volatile organic compounds (VOCs) are compounds with chemical and physical properties that allow the compounds to move freely between the water and air phases of the environment. VOCs are widespread in the environment because of this mobility. Many VOCs have properties that make them suspected or known hazards to the health of humans and aquatic organisms. Consequently, understanding the processes affecting the concentration and distribution of VOCs in the environment is necessary. The transport, behavior, and fate of VOCs in streams are determined by combinations of chemical, physical, and biological processes. These processes are volatilization, absorption, wet and dry deposition, microbial degradation, sorption, hydrolysis, aquatic photolysis, oxidation, chemical reaction, biocon-centration, advection, and dispersion. The relative importance of each of these processes depends on the characteristics of the VOC and the stream. The U.S. Geological Survey National Water-Quality Assessment Program selected 55 VOCs for study. This article reviews the characteristics of the various processes that could affect the transport, behavior, and fate of these VOCs in streams.

Critical Reviews in Environmental Science and Tech↗

USGS2007

Ground-Water Quality and Potential Effects of Individual Sewage Disposal System Effluent on Ground-Water Quality in Park County, Colorado, 2001-2004

In 2000, the U.S. Geological Survey, in cooperation with Park County, Colorado, began a study to evaluate ground-water quality in the various aquifers in Park County that supply water to domestic wells. The focus of this study was to identify and describe the principal natural and human factors that affect ground-water quality. In addition, the potential effects of individual sewage disposal system (ISDS) effluent on ground-water quality were evaluated. Ground-water samples were collected from domestic water-supply wells from July 2001 through October 2004 in the alluvial, crystalline-rock, sedimentary-rock, and volcanic-rock aquifers to assess general ground-water quality and effects of ISDS's on ground-water quality throughout Park County. Samples were analyzed for physical properties, major ions, nutrients, bacteria, and boron; and selected samples also were analyzed for dissolved organic carbon, human-related (wastewater) compounds, trace elements, radionuclides, and age-dating constituents (tritium and chlorofluorocarbons). Drinking-water quality is adequate for domestic use throughout Park County with a few exceptions. Only about 3 percent of wells had concentrations of fluoride, nitrate, and (or) uranium that exceeded U.S. Environmental Protection Agency national, primary drinking-water standards. These primary drinking-water standards were exceeded only in wells completed in the crystalline-rock aquifers in eastern Park County. Escherichia coli bacteria were detected in one well near Guffey, and total coliform bacteria were detected in about 11 percent of wells sampled throughout the county. The highest total coliform concentrations were measured southeast of the city of Jefferson and west of Tarryall Reservoir. Secondary drinking-water standards were exceeded more frequently. About 19 percent of wells had concentrations of one or more constituents (pH, chloride, fluoride, sulfate, and dissolved solids) that exceeded secondary drinking-water standards. Currently (2004), there is no federally enforced drinking-water standard for radon in public water-supply systems, but proposed regulations suggest a maximum contaminant level of 300 picocuries per liter (pCi/L) and an alternative maximum contaminant level of 4,000 pCi/L contingent on other mitigating remedial activities to reduce radon levels in indoor air. Radon concentrations in about 91 percent of ground-water samples were greater than or equal to 300 pCi/L, and about 25 percent had radon concentrations greater than or equal to 4,000 pCi/L. Generally, the highest radon concentrations were measured in samples collected from wells completed in the crystalline-rock aquifers. Analyses of ground-water-quality data indicate that recharge from ISDS effluent has affected some local ground-water systems in Park County. Because roughly 90 percent of domestic water used is assumed to be recharged by ISDS's, detections of human-related (wastewater) compounds in ground water in Park County are not surprising; however, concentrations of constituents associated with ISDS effluent generally are low (concentrations near the laboratory reporting levels). Thirty-eight different organic wastewater compounds were detected in 46 percent of ground-water samples, and the number of compounds detected per sample ranged from 1 to 17 compounds. Samples collected from wells with detections of wastewater compounds also had significantly higher (p-value < 0.05) chloride and boron concentrations than samples from wells with no detections of wastewater compounds. ISDS density (average subdivision lot size used to estimate ISDS density) was related to ground-water quality in Park County. Chloride and boron concentrations were significantly higher in ground-water samples collected from wells located in areas that had average subdivision lot sizes of less than 1 acre than in areas that had average subdivision lot sizes greater than or equal to 1 acre. For wells completed in the crystalline-

Scientific Investigations Report↗

USGS1994

Summary of national standards and guidelines for pesticides in water, bed sediment, and aquatic organisms and their application to water-quality assessments

Current (1993) national standards and guidelines pertaining to pesticide contaminants in water, bed sediment, and fish and shellfish tissues are summarized to provide a condensed reference source for definitions and current values applicable to pesticides in aquatic environmental media. This report facilitates comparison of measured concen- trations of pesticides in environmental samples with applicable standards and guidelines. For each standard or guideline, the following is provided: (1) Definition, including the underlying assumptions and mathematical derivation; (2) originating agency; (3) statutory authority; (4) regulatory status and, for standards, the agency responsible for enforcing the standard; (5) applicable sampling medium; (6) beneficial use and resource protected, and (7) full citations of published documentation. The report emphasizes the appropriate application on national standards and guidelines to water-quality data on pesticides to aid in assessing potential adverse effects on human health, aquatic organisms, and wildlife. (USGS)

Open-File Report↗

USGS2023

Understanding drivers of mercury in lake trout (Salvelinus namaycush), a top-predator fish in southwest Alaska's parklands

Mercury (Hg) is a widespread element and persistent pollutant, harmful to fish, wildlife, and humans in its organic, methylated form. The risk of Hg contamination is driven by factors that regulate Hg loading, methylation, bioaccumulation, and biomagnification. In remote locations, with infrequent access and limited data, understanding the relative importance of these factors can pose a challenge. Here, we assessed Hg concentrations in an apex predator fish species, lake trout (Salvelinus namaycush), collected from 14 lakes spanning two National Parks in southwest Alaska, U.S.A. We then examined factors associated with the variation in fish Hg concentrations using a Bayesian hierarchical model. We found that total Hg concentrations in water were consistently low among lakes (0.11–0.50 ng L− 1). Conversely, total Hg concentrations in lake trout spanned a thirty-fold range (101–3046 ng g− 1 dry weight), with median values at 7 lakes exceeding Alaska’s human consumption threshold. Model results showed that fish age and, to a lesser extent, body condition best explained variation in Hg concentration among fish within a lake, with Hg elevated in older, thinner lake trout. Other factors, including plankton methyl Hg content, fish species richness, volcano proximity, and glacier loss, best explained variation in lake trout Hg concentration among lakes. Collectively, these results provide evidence that multiple, hierarchically nested factors control fish Hg levels in these lakes.

Alaska↗

USGS2024

A genomic hotspot of diversifying selection and structural change in the hoary bat (Lasiurus cinereus)

Background Previous work found that numerous genes positively selected within the hoary bat ( Lasiurus cinereus ) lineage are physically clustered in regions of conserved synteny. Here I further validate and expand on those finding utilizing an updated L. cinereus genome assembly and additional bat species as well as other tetrapod outgroups. Methods A chromosome-level assembly was generated by chromatin-contact mapping and made available by DNAZoo ( www.dnazoo.org ). The genomic organization of orthologous genes was extracted from annotation data for multiple additional bat species as well as other tetrapod clades for which chromosome-level assemblies were available from the National Center for Biotechnology Information (NCBI). Tests of branch-specific positive selection were performed for L. cinereus using PAML as well as with the HyPhy package for comparison. Results Twelve genes exhibiting significant diversifying selection in the L. cinereus lineage were clustered within a 12-Mb genomic window; one of these ( Trpc4 ) also exhibited diversifying selection in bats generally. Ten of the 12 genes are landmarks of two distinct blocks of ancient synteny that are not linked in other tetrapod clades. Bats are further distinguished by frequent structural rearrangements within these synteny blocks, which are rarely observed in other Tetrapoda. Patterns of gene order and orientation among bat taxa are incompatible with phylogeny as presently understood, implying parallel evolution or subsequent reversals. Inferences of positive selection were found to be robust to alternative phylogenetic topologies as well as a strong shift in background nucleotide composition in some taxa. Discussion This study confirms and further localizes a genomic hotspot of protein-coding divergence in the hoary bat, one that also exhibits an increased tempo of structural change in bats compared with other mammals. Most genes in the two synteny blocks have elevated expression in brain tissue in humans and model organisms, and genetic studies implicate the selected genes in cranial and neurological development, among other functions.

PeerJ↗

USGS2017

Informing recovery in a human-transformed landscape: Drought-mediated coexistence alters population trends of an imperiled salamander and invasive predators

Understanding the additive or interactive threats of habitat transformation and invasive species is critical for conservation, especially where climate change is expected to increase the severity or frequency of drought. In the arid southwestern USA, this combination of stressors has caused widespread declines of native aquatic and semi-aquatic species. Achieving resilience to drought and other effects of climate change may depend upon continued management, so understanding the combined effects of stressors is important. We used Bayesian hierarchical models fitted with 10-years of pond-based monitoring surveys for the federally-endangered Sonoran Tiger Salamander ( Ambystoma mavortium stebbinsi ) and invasive predators (fishes and American Bullfrogs, Lithobates catesbeianus ) that threaten native species. We estimated trends in occupancy of salamanders and invasive predators while accounting for hydrological dynamics of ponds, then used a two-species interaction model to directly estimate how invasive predators affected salamander occupancy. We also tested a conceptual model that predicted that drought, by limiting the distribution of invasive predators, could ultimately benefit native species. Even though occupancy of invasive predators was stationary and their presence in a pond reduced the probability of salamander presence by 23%, occupancy of Sonoran Tiger Salamanders increased, annually, by 2.2%. Occupancy of salamanders and invasive predators both declined dramatically following the 5th consecutive year of drought. Salamander occupancy recovered quickly after return to non-drought conditions, while occupancy of invasive predators remained suppressed. Models that incorporated three time-lagged periods (1 to 4 years) of local moisture conditions confirmed that salamanders and invasive predators responded differently to drought, reflecting how life-history strategies shape responses to disturbances. The positive 10-year trend in salamander occupancy and their rapid recovery after drought provided partial support for the hypothesis of drought-mediated coexistence with invasive predators. These results also suggest management opportunities for conservation of the Sonoran Tiger Salamander and other imperiled organisms in human-transformed landscapes.

Arizona, Sonora↗

USGS2022

Mapping the probability of freshwater algal blooms with various spectral indices and sources of training data

Algal blooms are pervasive in many freshwater environments and can pose risks to the health and safety of humans and other organisms. However, monitoring and tracking of potentially harmful blooms often relies on in-person observations by the public. Remote sensing has proven useful in augmenting in situ observations of algal concentration, but many hurdles hinder efficient application by end users. First, numerous approaches to estimate aquatic chlorophyll-a are available and can produce inconsistent results. Second, lack of quantitative in situ observations limits opportunities to train models for specific waterbodies, such that models developed for other systems must be used instead. We (1) implement univariate and multivariate logistic regression models to estimate the probability that aquatic chlorophyll-a concentrations exceed an accepted threshold beyond which harmful effects become likely and (2) evaluate the use of visually classified bloom/no-bloom satellite imagery to augment in situ training data. Using a binary classification of aquatic chlorophyll-a exceeding 10 μg / L, we found that (1) logistic regression models were ∼80 % accurate, (2) univariate models trained with visually classified data produce nearly the same accuracy (79%) as models trained with in situ observations (80%), and (3) augmenting in situ chlorophyll-a observations with visual classifications outperformed (82% accuracy) models trained on in situ observations alone (80% accuracy). These results provide a framework for evaluating multiple spectral indices in retrieving algal bloom presence or absence and illustrate that training data derived directly from satellite imagery can be useful in augmenting in situ observations.

Idaho, Oregon↗

USGS1999

South Florida ecosystems; changes through time

Ecosystems are communities of organisms, often including humans, and the associated physical and chemical environments in which they live. Ecosystems are a complex natural resource that need to be understood, carefully managed, and prudently conserved. Human modification of the environment, such as changing water drainage patterns and introducing pollutants (such as mercury) and nutrients (such as nitrates and phosphates), has altered critical ecosystems around the globe, and the south Florida region is now considered to be one of the most threatened ecosystems in the Nation. The south Florida ecosystem has both a land component, the Everglades (including all fresh-water wetlands south of Lake Okeechobee), and an estuarine component, Florida Bay. The two components are closely linked by hydrologic cycles and the plants and animals that live within the ecosystem.

Florida↗

USGS2021

Occurrence and distribution of mercury in streams and reservoirs in the Triangle Area of North Carolina, July 2007–June 2009

During the time period 2001–2006, the U.S. Geological Survey reported mercury-concentration measurements that exceeded the North Carolina water-quality criterion (NCWQC) of 0.012 microgram per liter for total recoverable mercury in streams and reservoirs across the Triangle Area of North Carolina. Mercury data were sparse, however, generally consisting of only one or two water samples per year. Additional monitoring and data analysis were needed to better determine the occurrence and distribution of mercury in the Triangle Area for all seasons and waterbody types as well as associations between mercury concentrations and water-quality and land-use parameters. Water at fifteen reservoir and 14 stream sites across the Triangle Area was sampled at various times between August 2007 and June 2009, with water samples collected from both the surfaces and bottoms of the water columns in reservoirs and from the surfaces of streams. A bed sediment sample was also collected at all reservoir sites and at all but one stream site. A total of 301 water samples was collected at reservoir sites. Filtered and total recoverable mercury were detected in at least one water sample collected from each reservoir site. A total of 77 water samples was collected from stream sites with filtered mercury detected in samples from one-half of these sites, and total recoverable mercury detected in at least one water sample from all but two sites. Total recoverable and filtered mercury concentrations exceeded the NCWQC for mercury more frequently in reservoir than in stream samples. Differences in sampling frequencies among seasons and between streams and reservoirs, however, may have negatively biased overall estimates of mercury concentrations in streams relative to reservoirs. Filtered mercury concentrations in surface-water samples from reservoirs and total recoverable mercury concentrations in bottom samples from reservoirs were highest in the fall, whereas no seasonal trends in filtered or total recoverable mercury were detected from stream samples. Total mercury concentrations were calculated for the bulk sample on the basis of the percentage of the grains in the bulk sample whose diameters that were smaller than 0.0625 millimeters. Total mercury concentrations in bed sediment were generally higher for samples from reservoir sites compared to streams sites, although the highest total mercury concentration in bed sediment was from a stream site. Concentrations of total recoverable mercury in water samples from stream sites all fell within the general range for streams and lakes without on-site significant anthropogenic sources (for example, mercury mines or industrial pollution), whereas samples collected from eight reservoir sites had total mercury concentrations in a range characteristic of sites affected by mercury mines or industrial pollution. Results suggested that litterfall may be a source of mercury in streams, whereas atmospheric deposition is likely a dominant source for reservoirs; however, high concentrations of filtered and total recoverable mercury concentrations in the fall season in some reservoir-water samples may warrant further analysis of potential hydrologic factors. Mercury concentrations in all water and bed sediment samples were below levels expected to cause adverse effects to humans and aquatic biota, indicating that mercury levels at the study sites in the Triangle Area were unlikely to cause an immediate health risk to humans or aquatic organisms. The high variability among several sample replicates for total recoverable mercury, however, indicated that inferences from total recoverable mercury concentrations can be tenuous.

North Carolina↗

USGS2016

Determination of pesticides and pesticide degradates in filtered water by direct aqueous-injection liquid chromatography-tandem mass spectrometry

A liquid chromatography-tandem mass spectrometry (LC-MS/MS) method was developed for determination of 229 pesticides compounds (113 pesticides and 116 pesticide degradates) in filtered water samples from stream and groundwater sites. The pesticides represent a broad range of chemical classes and were selected based on criteria such as current-use intensity, probability of occurrence in streams and groundwater, and toxicity to humans or aquatic organisms. More than half of the analytes are pesticide degradates. The method involves direct injection of a 100-microliter (μL) sample onto the LC-MS/MS without any sample preparation other than filtration. Samples are analyzed with two injections, one in electrospray ionization (ESI) positive mode and one in ESI negative mode, using dynamic multiple reaction monitoring (MRM) conditions, with two MRM transitions for each analyte. The LC-MS/MS instrument parameters were optimized for highest sensitivity for the most analytes. This report describes the analytical method and presents characteristics of the method validation including bias and variability, detection levels, and holding-time studies. Mean recoveries of most analytes (223 of 229) were within data-quality objectives of 100±30 percent at spike concentrations above method detection levels (MDLs) in all four matrices. The calculated MDLs ranged from 1 to 103 nanograms per liter (ng/L) for 182 analytes analyzed in the ESI positive mode, and from 2 to 106 ng/L for 42 analytes analyzed in the ESI negative mode. Five analytes had MDLs between 100 and 250 ng/L. The stability studies in reagent water demonstrated that the largest number of the pesticide compounds (227 of 229) were stable after 14 days of storage at 4 degrees Celsius, so these were selected as the practical holding time and storage temperature for routine sample processing. The use of antimicrobial reagent citric acid to adjust the sample pH to about 4 also resulted in lower recoveries of some analytes, so it should not be used as a routine sample preservative.

Techniques and Methods↗

USGS2024

Underwater flashlights: What light can tell us about water quality

Water is essential for life. The particles and dissolved chemicals found in rivers, lakes, and oceans are constantly changing with weather, seasons, and human activities. The substances found in water can be helpful or harmful to humans and other organisms. New technologies allow scientists to use waterproof computers (called sensors) to record the quality of water as it changes throughout the day or night. Many sensors use the interaction of water with light, or other energy forms, to learn about what is in it. Through observing what happens to light energy in water, scientists can reveal the sources and movements of harmful pollutants or essential nutrients for plants, animals, and bacteria. Networks containing many sensors work together to provide continuous information about the ever-changing conditions that affect all living organisms that depend on water.

Frontiers for Young Minds↗

USGS1995

Acidic deposition: A review of biological effects

The problem of acidic deposition and its possible effects on habitats, organisms, materials, and human health has been recognized for centuries. Earliest accounts date to Cicero (about 100 B.C.), who linked structural damage to buildings and statues in Rome to the smokey rains of wood and charcoal burning. 3 Based on estimated of human demographics and centers of population, problems caused by acidic deposition may extend back to 400 to 500 B.C., but were not fully manifested until the mid-1800s with the rise of the Industrial revolution. the term "acid rain" was apparently first coined by R.A. Smith in 1972. 4

Book chapter↗

USGS1995

Bioindicators used in aquatic and terrestrial monitoring

There are many different types of contaminants present in the environment ranging from synthetic chemicals, which would not be present in the environment without man's intervention, to trace metals that are required for life. Concerns range from possible harmful effects on flora and fauna to possible harm to humans consuming such organisms. The complete chemical analysis for all possible environmental contaminants in sediments, water, air, and every species and sample of interest would not only be excessively costly, but the facilities to handle do many samples do not exist. Such chemical analysis would only establish the presence of contaminants, without revealing how available or active they were within the organism. Bioindicators, sometimes called biomarkers , are responses in living organisms that may simply signify exposure to contaminants, may predict future harm, or may themselves be harmful effects. In this chapter, a bioindicator will be interpreted to mean the same as a biomarker (a biochemical, physiological, or morphological response), but not a population or ecosystem bioindicator such as a sentinel species, genetic variability, or species richness. thus, a bioindicator (biomarker) may be studied in a particular species to assess the status of that species, or in a sentinel species to assess habitat status. Individuals of the sentinel species might be those already residing at the site of interest or might be pristine organisms brought to the site and maintained in cages (fish) or released and recovered (birds).

Book chapter↗

USGS2025

Disease, environment, and pollution: Understanding drivers behind tumour outbreaks in sea turtles

Various wildlife diseases of the Anthropocene (the Anthropocene currently has no formal status in the Divisions of Geologic Time https://pubs.usgs.gov/fs/2018/3054/fs20183054.pdf , accessed 4 June 2024) have root causes that are found in human-driven environmental disturbances. Fibropapillomatosis of sea turtles is exemplary of a human-exacerbated wildlife disease, and this case study offers an overview of how we applied a One Health approach and interdisciplinary process to better understand its complexity and highlight the interconnections existing between the health of the environment, and of the wildlife and humans living in it. Persistent organic pollutants (POPs) have known detrimental effects on human and wildlife health. Ubiquitous in the environment, these degradation-resistant chemicals have a high bioaccumulation potential. This case study describes the interdisciplinary plan and One Health design implemented to measure the role of harmful pollutants in the occurrence of a marine turtle panzootic fibropapillomatosis (FP). FP is a neoplastic disease that causes the growth of debilitating tumours on soft tissues and internal organs. Disease incidence has been increasing significantly throughout the Anthropocene and the reasons are still uncertain. The pervasive effect of pollution in marine coastal habitats has often been hypothesized as a driver of high disease prevalence but never fully tested. Our project combines disease ecology, marine field biology, and chemical toxicology in the attempt to unravel the intricate dynamics behind FP. We here describe the complex process used to develop a methodology to measure levels of harmful seawater pollutants such as polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), and organochlorine pesticides (OCPs) in important sea turtle habitats in Florida. The proposed contaminants are among the top priority harmful pollutants, highly carcinogenic in aquatic animals, and bioaccumulate in sea turtles. Although only providing a description of the methodological process, this case study can help future research to apply similar transdisciplinary studies in the context of wildlife diseases. Understanding the effects of anthropogenic-driven pollution activity on ocean health can clarify its consequences to the health of wildlife and humans living in and around that environment.

One Health Cases↗

USGS2020

Assessing the water quality impacts of two Category-5 hurricanes on St. Thomas, Virgin Islands

Managing waterborne and water-related diseases is one of the most critical factors in the aftermath of hurricane-induced natural disasters. The goal of the study was to identify water-quality impairments in order to set the priorities for post-hurricane relief and to guide future decisions on disaster preparation and relief administration. Field investigations were carried out on St. Thomas, U.S. Virgin Islands as soon as the disaster area became accessible after the back-to-back hurricane strikes by Irma and Maria in 2017. Water samples were collected from individual household rain cisterns, the coastal ocean, and street-surface runoffs for microbial concentration. The microbial community structure and the occurrence of potential human pathogens were investigated in samples using next generation sequencing. Loop mediated isothermal amplification was employed to detect fecal indicator bacteria, Enterococcus faecalis . The results showed both fecal indicator bacteria and Legionella genetic markers were prevalent but were low in concentration in the water samples. Among the 22 cistern samples, 86% were positive for Legionella and 82% for Escherichia-Shigella . Enterococcus faecalis was detected in over 68% of the rain cisterns and in 60% of the coastal waters (n = 20). Microbial community composition in coastal water samples was significantly different from cistern water and runoff water. Although identification at bacterial genus level is not direct evidence of human pathogens, our results suggest cistern water quality needs more organized attention for protection of human health, and that preparation and prevention measures should be taken before natural disasters strike.

Water Research↗

USGS2017

Groundwater quality in the Valley and Ridge and Piedmont and Blue Ridge carbonate-rock aquifers, eastern United States

Groundwater provides nearly 50 percent of the Nation’s drinking water. To help protect this vital resource, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Project assesses groundwater quality in aquifers that are important sources of drinking water. The Valley and Ridge and Piedmont and Blue Ridge carbonate-rock aquifers constitute two of the important areas being evaluated. One or more inorganic constituents with human-health benchmarks were detected at high concentrations in about 15 percent of the study area and at moderate concentrations in about 17 percent. Organic constituents were not detected at high concentrations in the study area. One or more organic constituents with human-health benchmarks were detected at moderate concentrations in about 2 percent of the study area.

Fact Sheet↗

USGS2017

Groundwater quality in the Basin and Range Basin-Fill Aquifers, southwestern United States

Groundwater provides nearly 50 percent of the Nation’s drinking water. To help protect this vital resource, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Project assesses groundwater quality in aquifers that are important sources of drinking water. The Basin and Range basin-fill aquifers constitute one of the important areas being evaluated. One or more inorganic constituents with human-health benchmarks were detected at high concentrations in about 20 percent of the study area and at moderate concentrations in about 49 percent. Organic constituents were not detected at high concentrations in the study area. One or more organic constituents with human-health benchmarks were detected at moderate concentrations in about 3 percent of the study area.

Arizona, California, Nevada, Utah↗