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At least 55 records · Page 3Linked to original sources
USGS1997

Perceptions of species abundance, distribution, and diversity: Lessons from four decades of sampling on a government-managed reserve

We examined data relative to species abundance, distribution, and diversity patterns of reptiles and amphibians to determine how perceptions change over time and with level of sampling effort. Location data were compiled on more than one million individual captures or observations of 98 species during a 44-year study period on the US Department of Energy’s (DOE) Savannah River Site National Environmental Research Park (SRS-NERP) in South Carolina. We suggest that perceptions of herpetofaunal species diversity are strongly dependent on level of effort and that land management decisions based on short-term data bases for some faunal groups could result in serious errors in environmental management. We provide evidence that acquiring information on biodiversity distribution patterns is compatible with multiyear spatially extensive research programs and also provide a perspective of what might be achieved if long-term, coordinated research efforts were instituted nationwide. To conduct biotic surveys on government-managed lands, we recommend revisions in the methods used by government agencies to acquire and report biodiversity data. We suggest that government and industry employees engaged in biodiversity survey efforts develop proficiency in field identification for one or more major taxonomic groups and be encouraged to measure the status of populations quantitatively with consistent and reliable methodologies. We also suggest that widespread academic cooperation in the dissemination of information on regional patterns of biodiversity could result by establishment of a peer-reviewed, scientifically rigorous journal concerned with status and trends of the biota of the United States.

Environmental Management↗
USGS1998

Arsenic, nitrate, and chloride in groundwater, Oakland County, Michigan

In 1996, the U.S. Geological Survey (USGS), in cooperation with the Michigan Department of Environmental Quality (MDEQ) and nine southeast Michigan counties, began a study of the factors controlling arsenic concentrations in drinking water. The early results of this study raised broader concerns in Oakland County about the quality of groundwater in general and drinking water in particular. In response to these concerns, Oakland County worked with the USGS and the Center for Applied Environmental Research at the University of Michigan - Flint (CAER) to study distributions of arsenic, nitrate and chloride in groundwater, with emphasis on sites where concentrations of these constituents exceeded the Maximum Contaminant Levels (MCLs) and Secondary Maximum Contaminant Levels (SMCLs) set by the U.S. Environmental Protection Agency (EPA). The maps produced for this report are based on historical data compiled from MDEQ records.

Michigan↗
USGS1998

Arsenic, nitrate, and chloride in groundwater, Groveland Township, Oakland County, Michigan

The U.S. Geological Survey (USGS) and the Center for Applied Environmental Research at the University of Michigan-Flint (CAER) mapped distributions of arsenic, nitrate, and chloride in the groundwater of Oakland County. Emphasis was placed on sites that exceeded Maximum Contaminant Levels (MCL) and Secondary Maximum Contaminant Levels (SMCL) set by the U.S. Environmental Protection Agency. The maps were based on historical data from records compiled by the Michigan Department of Environmental Quality (MDEQ). The USGS collected and analyzed samples to test the water quality in a number of these wells to confirm the overall validity of the historical records. The maps showed that each of the chemical constituents is widely distributed. High concentrations of arsenic are most common in the northern and northwestern parts of the county. Nitrate has been detected in groundwater in most townships but samples with concentrations above the MCL tend to cluster around high-density lakeshore communities. Chlorides are the most widely distributed and samples with concentrations above the SMCL also cluster in high-density lakeshore communities. To provide homeowners with more detailed information on the distribution of these water-quality indicators, a series of township maps have been prepared. These maps highlight square-mile sections that contain, or are close to, wells in which concentrations of arsenic, nitrate, or chloride greater than the (S)MCL have been detected.

Michigan↗
USGS2004

Arsenic, nitrate, and chloride in groundwater, Oakland County, Michigan

In 1996, the U.S. Geological Survey (USGS), in cooperation with the Michigan Department of Environmental Quality (MDEQ) and nine southeast Michigan counties, began a study of the factors controlling arsenic concentrations in drinking water. The early results of this study raised broader concerns in Oakland County about the quality of groundwater in general and drinking water in particular. In response to these concerns, Oakland County worked with the USGS and the Center for Applied Environmental Research at the University of Michigan – Flint (CAER) to study distributions of arsenic, nitrate, and chloride in groundwater, with emphasis on sites where concentrations of these constituents exceeded the Maximum Contaminant Levels (MCL’s) and Secondary Maximum Contaminant Levels (SMCL’s) set by the U.S. Environmental Protection Agency (USEPA). The maps produced for this report are based on historical data compiled from MDEQ records. This fact sheet is a revision of USGS Fact Sheet 135-98, “Arsenic, nitrate, and chloride in groundwater in Oakland County in Oakland County, Michigan” (Aichele and others, 1998) to incorporate revisions to the USEPA MCL for arsenic.

Michigan↗
USGS2011

Compilation of watershed models for tributaries to the Great Lakes, United States, as of 2010, and identification of watersheds for future modeling for the Great Lakes Restoration Initiative

As part of the Great Lakes Restoration Initiative (GLRI) during 2009–10, the U.S. Geological Survey (USGS) compiled a list of existing watershed models that had been created for tributaries within the United States that drain to the Great Lakes. Established Federal programs that are overseen by the National Oceanic and Atmospheric Administration (NOAA) and the U.S. Army Corps of Engineers (USACE) are responsible for most of the existing watershed models for specific tributaries. The NOAA Great Lakes Environmental Research Laboratory (GLERL) uses the Large Basin Runoff Model to provide data for the management of water levels in the Great Lakes by estimating United States and Canadian inflows to the Great Lakes from 121 large watersheds. GLERL also simulates streamflows in 34 U.S. watersheds by a grid-based model, the Distributed Large Basin Runoff Model. The NOAA National Weather Service uses the Sacramento Soil Moisture Accounting model to predict flows at river forecast sites. The USACE created or funded the creation of models for at least 30 tributaries to the Great Lakes to better understand sediment erosion, transport, and aggradation processes that affect Federal navigation channels and harbors. Many of the USACE hydrologic models have been coupled with hydrodynamic and sediment-transport models that simulate the processes in the stream and harbor near the mouth of the modeled tributary. Some models either have been applied or have the capability of being applied across the entire Great Lakes Basin; they are (1) the SPAtially Referenced Regressions On Watershed attributes (SPARROW) model, which was developed by the USGS; (2) the High Impact Targeting (HIT) and Digital Watershed models, which were developed by the Institute of Water Research at Michigan State University; (3) the Long-Term Hydrologic Impact Assessment (L–THIA) model, which was developed by researchers at Purdue University; and (4) the Water Erosion Prediction Project (WEPP) model, which was developed by the National Soil Erosion Research Laboratory of the U.S. Department of Agriculture. During 2010, the USGS used the Precipitation-Runoff Modeling System (PRMS) to create a hydrologic model for the Lake Michigan Basin to assess the probable effects of climate change on future groundwater and surface-water resources. The Water Availability Tool for Environmental Resources (WATER) model and the Analysis of Flows In Networks of CHannels (AFINCH) program also were used to support USGS GLRI projects that required estimates of streamflows throughout the Great Lakes Basin. This information on existing watershed models, along with an assessment of geologic, soils, and land-use data across the Great Lakes Basin and the identification of problems that exist in selected tributary watersheds that could be addressed by a watershed model, was used to identify three watersheds in the Great Lakes Basin for future modeling by the USGS. These watersheds are the Kalamazoo River Basin in Michigan, the Tonawanda Creek Basin in New York, and the Bad River Basin in Wisconsin. These candidate watersheds have hydrogeologic, land-type, and soil characteristics that make them distinct from each other, but that are representative of other tributary watersheds within the Great Lakes Basin. These similarities in the characteristics among nearby watersheds will enhance the usefulness of a model by improving the likelihood that parameter values from a previously modeled watershed could reliably be used in the creation of a model of another watershed in the same region. The software program Hydrological Simulation Program–Fortran (HSPF) was selected to simulate the hydrologic, sedimentary, and water-quality processes in these selected watersheds. HSPF is a versatile, process-based, continuous-simulation model that has been used extensively by the scientific community, has the ongoing technical support of the U.S. Environmental Protection Agency and USGS, and provides a means to evaluate the effects that land-use changes or management practices might have on the simulated processes.

Great Lakes Basin↗
USGS2000

Early avian research at the Savannah River Site, South Carolina: historical highlights and possibilities for the future

Avian biology and collection of baseline population data was a major part of the first decade (1951-1961) of field research at the Savannah River Site (SRS). Baseline inventories involving organisms and land-use types were part of the mission in the early contracts between the Atomic Energy Commission (now the Department of Energy) and the University of Georgia prior to the establishment of the Savannah River Ecology Laboratory (SREL) as a National Environmental Research Park Laboratory. About 27% of the SREL publications during this first decade dealt with birds. Since that time, research on the SRS landscape has expanded and broadened with less than 10% of the publications dealing with birds. SRS changed also from an agriculturally dominated area with ca. 40% open areas (fields, crops, pastures) to a timber-managed area with ca. 80% forests, 12% open areas, and 2% open water impoundments. Baseline breeding bird populations of the SRS in the 1950s were typical for the region with avian species richness and density increasing with the age and succession of the vegetation (0-26 species and densities of 0-741 pairs/km2 for the habitats surveyed). During the first decade at the SRS, the resident game bird population of Northern Bobwhites (Colinus virginianus) increased and the Mourning Dove (Zenaida rnacroura) population, a migratory upland game bird, remained stable. Current avian research efforts, as well as new opportunities to reexamine the breeding bird populations and the landscape of SRS, will provide a better understanding of the potential causes of declines of neotropical migratory birds, declines of resident and migratory game birds, and how habitat influences invasions and extinctions of breeding birds in the region. Emphasis for future research and monitoring should be on neotropical migratory bird populations in decline (Yellow-billed Cuckoo, Coccyzus americanus; Eastern Wood-Pewee, Contopus virens; Wood Thrush, Hylocichla mustelina; Prairie Warbler, Dendroica discolor; and Painted Bunting, Passerina ciris), resident species in decline (e.g., Loggerhead Shrike, Lanius ludovicianus), certain species groups (e.g., waterfowl and wading birds), important habitat, and recent invasions and extinctions of breeding species. Old growth forested wetlands should be monitored because of the large number of neotropical migratory birds that depend on this habitat in the southeastern United States. A variety of survey techniques will be needed to determine population trends: line transects, call or song playbacks, roadside point surveys (call counts for game birds), aerial surveys, and presence or absence of species within stratified areas of SRS. The SRS provides opportunity for avian research at the landscape level with the potential to solve problems important to the survival of many bird populations as well as to increase our knowledge on how to manage and conserve our avian natural resources for the future.

Book chapter↗
USGS2012

Thiamine deficiency: a viable hypothesis for paralytic syndrome in Baltic birds. Commentary on Sonne et al., 2012. A review of the factors causing paralysis in wild birds: implications for the paralytic syndrome observed in the Baltic Sea. Science of the Total Environment 416:32-39

In a recent assessment of hypotheses presented by Balk et al. (2009) regarding the etiology of a paralytic disease inflicting bird populations in Northern Europe, Sonne et al. (2012) “call for a major coordinated effort on research…” to “… integrate clinical, physiological, ecological and demographic investigations at all levels to better dissect the causes, the effects on ecosystems and potential impact on affected populations.” Further, they offer, “This should be undertaken before thiamine deficiency can be considered to constitute a serious problem to e.g. the Baltic ecosystems.” While we agree that holistic approaches to environmental research and management are essential, our experience suggests that waiting for definitive results from long-term research and monitoring programs prior to “consideration” of thiamine deficiency as a major factor in the paralytic disease observed in wild bird populations would hinder the ability of natural resource managers to understand and mitigate declining trends in avian population abundance.

Science of the Total Environment↗
USGS2021

Techniques to improve ecological interpretability of black box machine learning models

Statistical modeling of ecological data is often faced with a large number of variables as well as possible nonlinear relationships and higher-order interaction effects. Gradient boosted trees (GBT) have been successful in addressing these issues and have shown a good predictive performance in modeling nonlinear relationships, in particular in classification settings with a categorical response variable. They also tend to be robust against outliers. However, their black-box nature makes it difficult to interpret these models. We introduce several recently developed statistical tools to the environmental research community in order to advance interpretation of these black-box models. To analyze the properties of the tools, we applied gradient boosted trees to investigate biological health of streams within the contiguous USA, as measured by a benthic macroinvertebrate biotic index. Based on these data and a simulation study, we demonstrate the advantages and limitations of partial dependence plots (PDP), individual conditional expectation (ICE) curves and accumulated local effects (ALE) in their ability to identify covariate–response relationships. Additionally, interaction effects were quantified according to interaction strength (IAS) and Friedman’s H 2 "> H 2 statistic. Interpretable machine learning techniques are useful tools to open the black-box of gradient boosted trees in the environmental sciences. This finding is supported by our case study on the effect of impervious surface on the benthic condition, which agrees with previous results in the literature. Overall, the most important variables were ecoregion, bed stability, watershed area, riparian vegetation and catchment slope. These variables were also present in most identified interaction effects. In conclusion, graphical tools (PDP, ICE, ALE) enable visualization and easier interpretation of GBT but should be supported by analytical statistical measures. Future methodological research is needed to investigate the properties of interaction tests. Supplementary materials accompanying this paper appear on-line.

Journal of Agricultural, Biological, and Environme↗
USGS2011

Partnership of Environmental Education and Research-A compilation of student research, 1999-2008

The U.S. Geological Survey (USGS) Tennessee Water Science Center and the College of Engineering and Technology at Tennessee State University developed a Partnership in Environmental Education and Research (PEER) to support environmental research at TSU and to expand the environmental research capabilities of the USGS in Tennessee. The PEER program is driven by the research needs to better define the occurrence, fate, and transport of contaminants in groundwater and surface water. Research in the PEER program has primarily focused on the transport and remediation of organic contamination in karst settings. Research conducted through the program has also expanded to a variety of media and settings. Research areas include contaminant occurrence and transport, natural and enhanced bioremediation, geochemical conditions in karst aquifers, mathematical modeling for contaminant transport and degradation, new methods to evaluate groundwater contamination, the resuspension of bacteria from sediment in streams, the use of bioluminescence and chemiluminescence to identify the presence of contaminants, and contaminant remediation in wetlands. The PEER program has increased research and education opportunities for students in the College of Engineering, Technology, and Computer Science and has provided students with experience in presenting the results of their research. Students in the program have participated in state, regional, national and international conferences with more than 140 presentations since 1998 and more than 40 student awards. The PEER program also supports TSU outreach activities and efforts to increase minority participation in environmental and earth science programs at the undergraduate and graduate levels. TSU students and USGS staff participate in the TSU summer programs for elementary and high school students to promote earth sciences. The 2007 summer camps included more than 130 students from 20 different States and Washington DC.

Tennessee↗
USGS2025

Identifying conditions associated with outliers produced by three different chlorophyll fluorometers: A comparison of instrumentation and development of correction formulae

Measurements of chlorophyll concentration reported by fluorometers (fChl) are used in environmental research and monitoring, as inputs to models, and in the interpretation of remote sensing data. Researchers and managers benefit from understanding how to interpret and ensure the accuracy of fChl data collected by in situ fluorometers. Although fChl values produced by different manufacturers are often in agreement with discrete laboratory-derived Chlorophyll a (Chl a ) concentration measurements, there are instances in which results significantly differ. Further, when measuring fChl side by side, different fluorometers may report values that differ significantly from each other, despite passing calibration checks prior to deployment. We compared environmental conditions and phytoplankton species composition associated with instances in which fChl measurements from three different fluorometers (EXO2 Total Algae Smart Sensor, YSI Inc./Xylem Inc., Yellow Springs, Ohio; FluoroProbe III, bbe Moldaenke GmbH, Kiel, Germany; WETStar, Sea-Bird Scientific, Bellevue, Washington) were significantly different from laboratory-derived Chl a concentrations. Results indicated that elevated primary productivity, as indicated by high pH, dissolved oxygen, and the ratio of Chl a to phaeophytin, were correlated with underestimated fChl values recorded by each sensor. After removing outliers, we determined unique correction guidance for each of the three sensors and demonstrated that after applying correction formulae, fChl measurements produced by each sensor became directly comparable.

California↗
USGS2020

OpenCLC: An open-source software tool for similarity assessment of linear hydrographic features

The National Hydrography Dataset (NHD) is a foundational geospatial data source in the United States that enables extensive and diverse environmental research and supports decision-making in numerous contexts. However, the NHD requires regular validation and update given possible inconsistent initial collection and hydrographic changes. Furthermore, systems or tools that use NHD data must manage regular updates that occur within the high-resolution version of the NHD (NHD HR). This research contributes to filling this gap by establishing an open-source software tool named OpenCLC, which automatically identifies matching and mismatching line features between two sets of hydrographic flowlines. Aside from identifying differences among two version of NHD lines, results can be applied to improve the quality of NHD HR content. OpenCLC significantly outperforms the best available commercial off-the-shelf software in computational scalability, and it is made widely available as part of the CyberGIS Toolkit to benefit broad environmental and geospatial science communities.

SoftwareX↗
USGS2014

U.S. Geological Survey Karst Interest Group Proceedings, Carlsbad, New Mexico, April 29-May 2, 2014

Karst aquifer systems are present throughout parts of the United States and some of its territories, and have developed in carbonate rocks (primarily limestone and dolomite) that span an interval of time encompassing more than 550 million years. The depositional environments, diagenetic processes, post-depositional tectonic events, and geochemical weathering processes that form karst aquifers are varied and complex, and involve biological, chemical, and physical changes. These factors, combined with the diverse climatic regimes under which karst development in these rocks has taken place, result in the unique dual- or triple-porosity nature of karst aquifers. These complex hydrogeologic systems typically represent challenging and unique conditions to scientists attempting to study groundwater flow and contaminant transport in these terrains. The dissolution of carbonate rocks and the subsequent development of distinct and beautiful landscapes, caverns, and springs has resulted in the most exceptional karst areas of the United States being designated as national or state parks; commercial caverns and known privately owned caves number in the tens of thousands. Both public and private properties provide access for scientists to study the flow of groundwater in situ. Likewise, the range and complexity of landforms and groundwater flow systems associated with karst terrains are enormous, perhaps more than for any other aquifer type. Karst aquifers and landscapes that form in tropical areas, such as the cockpit karst along the north coast of Puerto Rico, differ greatly from karst landforms in more arid climates, such as the Edwards Plateau in west-central Texas or the Guadalupe Mountains near Carlsbad, New Mexico, where hypogenic processes have played a major role in speleogenesis. Many of these public and private lands also contain unique flora and fauna associated with these karst hydrogeologic systems. As a result, numerous federal, state, and local agencies have a strong interest in the study of karst terrains. Many of the major springs and aquifers in the United States have developed in carbonate rocks, such as the Floridan aquifer system in Florida and parts of Alabama, Georgia, and South Carolina; the Ozark Plateaus aquifer system in parts of Arkansas, Kansas, Missouri, and Oklahoma; and the Edwards-Trinity aquifer system in west-central Texas. These aquifers, and the springs that discharge from them, serve as major water-supply sources and as unique ecological habitats. Competition for the water resources of karst aquifers is common, and urban development and the lack of attenuation of contaminants in karst areas can impact the ecosystem and water quality of these aquifers. The concept for developing a platform for interaction among scientists within the U.S. Geological Survey (USGS) working on karst-related studies evolved from the November 1999 National Ground-Water Meeting of the USGS. As a result, the Karst Interest Group (KIG) was formed in 2000. The KIG is a loose-knit, grass-roots organization of USGS and non-USGS scientists and researchers devoted to fostering better communication among scientists working on, or interested in, karst science. The primary mission of the KIG is to encourage and support interdisciplinary collaboration and technology transfer among scientists working in karst areas. Additionally, the KIG encourages collaborative studies between the different mission areas of the USGS as well as other federal and state agencies, and with researchers from academia and institutes. The KIG also encourages younger scientists by participation of students in the poster and oral sessions. To accomplish its mission, the KIG has organized a series of workshops that are held near nationally important karst areas. To date (2014) six KIG workshops, including the workshop documented in this report, have been held. The workshops typically include oral and poster sessions on selected karst-related topics and research, as well as field trips to local karst features. Proceedings of the workshops are published by the USGS and are available online at http://water.usgs.gov/ogw/karst/kig . The first KIG workshop was held in St. Petersburg, Florida, February 13–16, 2001, in the vicinity of the large springs and other karst features of the Floridan aquifer system. The second KIG workshop was held August 20–22, 2002, in Shepherdstown, West Virginia, in proximity to the carbonate aquifers of the northern Shenandoah Valley and highlighted an invited presentation on karst literature by the late Barry F. Beck of P.E. LaMoreaux and Associates. The third KIG workshop was held September 12–15, 2005, in Rapid City, South Dakota, nearby to karst features in evaporites and limestones of the Madison Group in the Black Hills of South Dakota, including Wind Cave National Park and Jewel Cave National Monument. The workshop also included a featured presentation by Thomas Casadevall, Central Region Director, USGS, on the status of earth science at the USGS and evening trips to Jewel Cave led by Mike Wiles, National Park Service (NPS) and Wind Cave led by Rod Horrocks, NPS. The fourth KIG workshop was held May 27–29, 2008, and hosted by the Hoffman Environmental Research Institute and Center for Cave and Karst Studies at Western Kentucky University in Bowling Green, Kentucky, near Mammoth Cave National Park and karst features of the Chester Upland and Pennyroyal Plateau. The workshop featured a late-night field trip into Mammoth Cave with Rickard Toomey and Rick Olsen, NPS. The fifth workshop was held April 26–29, 2011, and was a joint meeting of the USGS KIG and University of Arkansas HydroDays, hosted by the Department of Geosciences at the University of Arkansas in Fayetteville. The workshop featured an outstanding field trip to the unique karst terrain along the Buffalo National River of the southern Ozarks and a keynote presentation on paleokarst in the United States by Art and Peggy Palmer. This sixth and current 2014 KIG workshop is hosted by the National Cave and Karst Research Institute (NCKRI) in Carlsbad, New Mexico, with Director of NCKRI, George Veni, serving as co-chair of the workshop with Eve Kuniansky, USGS. The session planning committee for this sixth workshop includes Van Brahana, USGS retired and University of Arkansas Professor Emeritus; Tom Byl, USGS and Tennessee State University; Zelda Bailey, former Director of NCKRI and retired Director, National Institute of Standards and Technology, Boulder Laboratory, Colorado; Patrick Tucci, USGS retired; and Mike Bradley, Allan Clark, Geoff Delin, Daniel Doctor, James Kaufmann, Eve Kuniansky, Randy Orndorff, Larry Spangler, and Dave Weary of the USGS. The karst hydrology field trip on Thursday will be led by Lewis Land (NCKRI karst hydrologist) and the optional Friday field trip on the geology of Carlsbad Caverns National Park will be led by George Veni. The keynote speaker is Dr. Penelope Boston, Director of Cave and Karst Studies at New Mexico Tech, Socorro, and Academic Director at NCKRI, who will address the future of karst research. Additionally, there is a featured presentation “Irish karst and its management,” by Caoimhe Hickey, The Geological Survey of Ireland, preceding a panel discussion on “Collaboration During Times of Limited Resources.” The extended abstracts of USGS authors were peer reviewed and approved for publication by the U.S. Geological Survey. Articles submitted by university researchers and other federal and state agencies did not go through the formal USGS peer review and approval process, and therefore may not adhere to our editorial standards or stratigraphic nomenclature and is not research conducted or data collected by the USGS. However, all articles had at a minimum of two peer reviews, and all articles were edited for consistency of appearance in the published Proceedings. The use of trade, firm or product names in any article is for descriptive purposes only and does not imply endorsement by the U.S. Government. The USGS, Office of Groundwater, provides technical support for the Karst Interest Group website and public availability of the Proceedings from these workshops, and the USGS Groundwater Resources Program funds the publication costs. Finally, the cover illustration is the work of Ann Tihansky, USGS, used since the first KIG workshop in 2000.

Scientific Investigations Report↗
USGS2004

Atlantic Flyway review: Region IV - Fall 2003: Patuxent powerline right-of-way (390-0764)

The station was operated on fewer days than usual in 2003, opening a bit later, closing a week early, and missing several good days in September through mid-October, when the manager/lead bander was conducting research on migrating birds in Lower Delmarva. As a result, capture totals for many species are not comparable to other years, and totals for several species, including House Wren, Northern Parula, Nashville Warbler, Blackthroated Green Warbler, Bay-breasted Warbler, American Redstart, Connecticut Warbler, and Common Yellowthroat, set record lows. Fifty-three birds banded in previous years were captured, all of species that either nest or. winter here. Included were a record high 16 Gray Catbirds, nine of which were hatching-year (HY) birds when banded. Six return Red-eyed Vireos were captured, again far fewer than during the station's first 20 years of operation; the oldest, an adult when banded in Aug 1998, was last captured in Aug 2000. Other highlights were captures of a Cerulean Warbler (HY male), a Marsh Wren, an American Tree Sparrow, and a Northern Saw-whet Owl with a meadow jumping mouse ( Zapus hudsonius ) in its talons. Special thanks to Danny Bystrak, who operated the station on many mornings during my absence. Thanks also to Marty Barron, Murray Efford, Cecilia Leumas, Woody Martin, Diann Prosser, Mike Quinlan, Gemma Radko, Jack Saba, and John Sauer, who provided regular or occasional assistance. Sara Campbell, assistant of Dr. Peter Marra at the Smithsonian Environmental Research Center, collected blood samples from over 500 birds to test for exposure to West Nile Virus. Results are not yet available.

Maryland↗
USGS2017

U.S. Geological Survey Karst Interest Group Proceedings, San Antonio, Texas, May 16–18, 2017

Introduction and Acknowledgments Karst aquifer systems are present throughout parts of the United States and some of its territories, and have developed in carbonate rocks (primarily limestone and dolomite) and evaporites (gypsum, anhydrite, and halite) that span an interval of time encompassing more than 550 million years. The depositional environments, diagenetic processes, post-depositional tectonic events, and geochemical weathering processes that form karst aquifers are varied and complex. These factors involve biological, chemical, and physical changes that when combined with the diverse climatic regimes in which karst development has taken place, result in the unique dual- or triple-porosity nature of karst aquifers. These complex hydrogeologic systems typically represent challenging and unique conditions to scientists attempting to study groundwater flow and contaminant transport in these terrains. The dissolution of carbonate rocks and the subsequent development of distinct and beautiful landscapes, caverns, and springs have resulted in the most exceptional karst areas being designated as national or state parks. Tens of thousands of similar areas in the United States have been developed into commercial caverns and known privately owned caves. Both public and private properties provide access for scientists to study the flow of groundwater in situ . Likewise, the range and complexity of landforms and groundwater flow systems associated with karst terrains are enormous, perhaps more than for any other aquifer type. Karst aquifers and landscapes that form in tropical areas, such as the cockpit karst along the north coast of Puerto Rico, differ greatly from karst landforms in more arid climates, such as the Edwards Plateau in west-central Texas or the Guadalupe Mountains near Carlsbad, New Mexico, where hypogenic processes have played a major role in speleogenesis. Many of these public and private lands also contain unique flora and fauna associated with these karst hydrogeologic systems. As a result, numerous federal, state, and local agencies have a strong interest in the study of karst terrains. Many of the major springs and aquifers in the United States have developed in carbonate rocks, such as the Floridan aquifer system in Florida and parts of Alabama, Georgia, and South Carolina; the Ozark Plateaus aquifer system in parts of Arkansas, Kansas, Missouri, and Oklahoma; and the Edwards-Trinity aquifer system in west-central Texas. These aquifers, and the springs that discharge from them, serve as major water-supply sources and form unique ecological habitats. Competition for the water resources of karst aquifers is common, and urban development and the lack of attenuation of contaminants in karst areas due to dissolution features that form direct pathways into karst aquifers can impact the ecosystem and water quality associated with these aquifers. The concept for developing a platform for interaction among scientists within the U.S. Geological Survey (USGS) working on karst-related studies evolved from the November 1999 National Groundwater Meeting of the USGS. As a result, the Karst Interest Group (KIG) was formed in 2000. The KIG is a loose-knit, grass-roots organization of USGS and non-USGS scientists and researchers devoted to fostering better communication among scientists working on, or interested in, karst science. The primary mission of the KIG is to encourage and support interdisciplinary collaboration and technology transfer among scientists working in karst areas. Additionally, the KIG encourages collaborative studies between the different mission areas of the USGS as well as with other federal and state agencies, and with researchers from academia and institutes. To accomplish its mission, the KIG has organized a series of workshops that have been held near nationally important karst areas. To date (2017) seven KIG workshops, including the workshop documented in this report, have been held. The workshops typically include oral and poster sessions on selected karst-related topics and research, as well as field trips to local karst areas. To increase non-USGS participation an effort was made for the workshops to be held at a university or institute beginning with the fourth workshop. Proceedings of the workshops are published by the USGS and are available online at the USGS publications warehouse https://pubs.er.usgs.gov/ by using the search term “karst interest group.” The first KIG workshop was held in St. Petersburg, Florida, in 2001, in the vicinity of the large springs and other karst features of the Floridan aquifer system. The second KIG workshop was held in 2002, in Shepherdstown, West Virginia, in proximity to the carbonate aquifers of the northern Shenandoah Valley, and highlighted an invited presentation on karst literature by the late Barry F. Beck of P.E. LaMoreaux and Associates. The third KIG workshop was held in 2005, in Rapid City, South Dakota, near evaporite karst features in limestones of the Madison Group in the Black Hills of South Dakota. The Rapid City KIG workshop included field trips to Wind Cave National Park and Jewel Cave National Monument, and featured a presentation by Thomas Casadevall, then USGS Central Region Director, on the status of Earth science at the USGS. The fourth KIG workshop in 2008 was hosted by the Hoffman Environmental Research Institute and Center for Cave and Karst Studies at Western Kentucky University in Bowling Green, Kentucky, near Mammoth Cave National Park and karst features of the Chester Upland and Pennyroyal Plateau. The workshop featured a late-night field trip into Mammoth Cave led by Rickard Toomey and Rick Olsen, National Park Service. The fifth KIG workshop in 2011 was a joint meeting of the USGS KIG and University of Arkansas HydroDays, hosted by the Department of Geosciences at the University of Arkansas in Fayetteville. The workshop featured an outstanding field trip to the unique karst terrain along the Buffalo National River in the southern Ozarks, and a keynote presentation on paleokarst in the United States was delivered by Art and Peggy Palmer. The sixth KIG workshop was hosted by the National Cave and Karst Research Institute (NCKRI) in 2014, in Carlsbad, New Mexico. George Veni, Director of the NCKRI, served as a co-chair of the workshop with Eve Kuniansky of the USGS. The workshop featured speaker Dr. Penelope Boston, Director of Cave and Karst Studies at New Mexico Tech, Socorro, and Academic Director at the NCKRI, who addressed the future of karst research. The field trip on evaporite karst of the lower Pecos Valley was led by Lewis Land (NCKRI karst hydrologist), and the field trip on the geology of Carlsbad Caverns National Park was led by George Veni. This current seventh KIG workshop is being held in San Antonio at the University of Texas at San Antonio (UTSA). This 2017 workshop is being hosted by the Department of Geological Sciences’ Student Geological Society (SGS), and student chapters of the American Association of Petroleum Geologists (AAPG) and Association of Engineering Geologists (AEG), with support by the UTSA Department of Geological Sciences and Center for Water Research. The UTSA student chapter presidents, Jose Silvestre (SGS), John Cooper (AAPG), and Tyler Mead (AEG) serve as co-chairs of the 2017 workshop with Eve Kuniansky of the USGS. The technical session committee is chaired by Eve Kuniansky, USGS, and includes Michael Bradley, Tom Byl, Rebecca Lambert, John Lane, and James Kaufmann, all USGS, and Patrick Tucci, retired USGS. The logistics committee includes Amy Clark, Yongli Gao, and Lance Lambert (Department Chair), UTSA Department of Geological Sciences; and Ryan Banta and Allan Clark, USGS, San Antonio, Texas. The field trip committee is chaired by Allan Clark and includes Amy Clark, Yongli Gao, and Keith Muehlestein, UTSA; Marcus Gary, Edwards Aquifer Authority and University of Texas at Austin; Ron Green, Southwest Research Institute; Geary Schindel, Edwards Aquifer Authority; and George Veni, NCKRI. Additionally, two organizations have assisted the UTSA student chapters in hosting the meeting by donating funds to the chapters: the Edwards Aquifer Authority, San Antonio, Texas, and the Barton Springs Edwards Aquifer Authority, Austin, Texas. Additionally, Yongli Gao, Center for Water Research and Department of Geological Sciences, UTSA, helped develop sessions on cave and karst research in China for this workshop. These proceedings could not have been accomplished without the assistance of Lawrence E. Spangler as co-editor who not only has subject matter expertise, but also serves as an editor with the USGS Science Publishing Network. We sincerely hope that this workshop continues to promote future collaboration among scientists of varied and diverse backgrounds, and improves our understanding of karst aquifer systems in the United States and its territories. The extended abstracts of USGS authors were peer reviewed and approved for publication by the USGS. Articles submitted by university researchers and other federal and state agencies did not go through the formal USGS peer review and approval process, and therefore may not adhere to USGS editorial standards or stratigraphic nomenclature. However, all articles had a minimum of two peer reviews and were edited for consistency of appearance in the proceedings. The use of trade, firm or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The USGS Water Availability and Use Science Program funded the publication costs of the proceedings.

Scientific Investigations Report↗
USGS2023

Improving ecological data science with workflow management software

Pressing environmental research questions demand the integration of increasingly diverse and large-scale ecological datasets as well as complex analytical methods, which require specialized tools and resources. Computational training for ecological and evolutionary sciences has become more abundant and accessible over the past decade, but tool development has outpaced the availability of specialized training. Most training for scripted analyses focuses on individual analysis steps in one script rather than creating a scripted pipeline, where modular functions comprise an ecosystem of interdependent steps. Although current computational training creates an excellent starting place, linear styles of scripting can risk becoming labor- and time-intensive and less reproducible by often requiring manual execution. Pipelines, however, can be easily automated or tracked by software to increase efficiency and reduce potential errors. Ecology and evolution would benefit from techniques that reduce these risks by managing analytical pipelines in a modular, readily parallelizable format with clear documentation of dependencies. Workflow management software (WMS) can aid in the reproducibility, intelligibility and computational efficiency of complex pipelines. To date, WMS adoption in ecology and evolutionary research has been slow. We discuss the benefits and challenges of implementing WMS and illustrate its use through a case study with the targets r package to further highlight WMS benefits through workflow automation, dependency tracking and improved clarity for reviewers. Although WMS requires familiarity with function-oriented programming and careful planning for more advanced applications and pipeline sharing, investment in training will enable access to the benefits of WMS and impart transferable computing skills that can facilitate ecological and evolutionary data science at large scales.

Methods in Ecology and Evolution↗
USGS2007

Potential effects of climate change on ground water in Lansing, Michigan

Computer simulations involving general circulation models, a hydrologic modeling system, and a ground water flow model indicate potential impacts of selected climate change projections on ground water levels in the Lansing, Michigan, area. General circulation models developed by the Canadian Climate Centre and the Hadley Centre generated meteorology estimates for 1961 through 1990 (as a reference condition) and for the 20 years centered on 2030 (as a changed climate condition). Using these meteorology estimates, the Great Lakes Environmental Research Laboratory's hydrologic modeling system produced corresponding period streamflow simulations. Ground water recharge was estimated from the streamflow simulations and from variables derived from the general circulation models. The U.S. Geological Survey developed a numerical ground water flow model of the Saginaw and glacial aquifers in the Tri-County region surrounding Lansing, Michigan. Model simulations, using the ground water recharge estimates, indicate changes in ground water levels. Within the Lansing area, simulated ground water levels in the Saginaw aquifer declined under the Canadian predictions and increased under the Hadley.

Michigan↗
USGS2006

Update on the distribution of the invasive Asian fish tapeworm, Bothriocephalus acheilognathi, in the U.S. and Canada

The documented range of the invasive and potentially pathogenic Asian fish tapeworm, Bothriocephalus acheilognathi Yamaguti, 1934 in the United States and Canada is updated based on examination of museum depositions and original field collections. Gravid specimens of B. acheilognathi were collected from the fathead minnow Pimephales promelas Rafinesque in Peter Lake, at the University of Notre Dame Environmental Research Center (UNDERC) Land o' Lakes, Wisconsin. A single immature specimen of the parasite was collected from a white bass, Morone chrysops (Rafinesque) in Lake Winnipeg, Manitoba, Canada. This is the first record of B. acheilognathi in Canada and extends its northern range in the interior of the continent by more than 600 miles over the last documented record. The previous record of B. acheilognathi in Canada, from the northern pikeminnow, Ptychocheilus oregonensis in British Columbia, is a misidentification of Eubothrium tulipai. Examination of selected records of intestinal cestodes from native cyprinids, in the Harold W. Manter Laboratory of Parasitology (HWML, n = 9) collection and in the United States National Parasite Collection (USNPC, n = 8), provided evidence of the parasite in Nebraska and possibly in the upper Colorado River basin. Introductions into Wisconsin-Michigan were due to the stocking of golden shiners, whereas the source of the introduction in Manitoba remains unknown.

Comparative Parasitology↗
USGS2004

Where in the world are my field plots? Using GPS effectively in environmental field studies

Global positioning system (GPS) technology is rapidly replacing tape, compass, and traditional surveying instruments as the preferred tool for estimating the positions of environmental research sites. One important problem, however, is that it can be difficult to estimate the uncertainty of GPS-derived positions. Sources of error include various satellite- and site-related factors, such as forest canopy and topographic obstructions. In a case study from the Hubbard Brook Experimental Forest in New Hampshire, hand-held, mapping-grade GPS receivers generally estimated positions with 1–5 m precision in open, unobstructed settings, and 20–30 m precision under forest canopy. Surveying-grade receivers achieved precisions of 10 cm or less, even in challenging terrain. Users can maximize the quality of their GPS measurements by “mission planning” to take advantage of high-quality satellite conditions. Repeated measurements and simultaneous data collection at multiple points can be used to assess accuracy and precision.

Frontiers in Ecology and the Environment↗