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USGS2024

Estimated reductions in phosphorus loads from removal of leaf litter in the Lake Champlain drainage area, Vermont

Excess nutrient loading and other factors are driving eutrophication and other negative effects on water-quality conditions in Lake Champlain and other receiving waters in Vermont. Two common best management practices were evaluated to determine how these practices can be optimized by targeting maintenance and operation to align better with seasonally driven needs, specifically to help municipalities remove a greater proportion of seasonal leaves and organic debris, reduce nutrient loading, and achieve water-quality goals. To characterize solid materials typically removed by the municipal BMPs of catch-basin (CB) cleaning and street cleaning (SC), subsamples of CB and SC materials were collected each month from nine participating municipalities in central and northwestern Vermont between September 2017 and November 2018. Monthly and seasonal composites of CB and SC samples were created from the subsamples of available materials from all municipalities. Samples were analyzed for concentrations of total organic carbon, total Kjeldahl nitrogen, and total phosphorus (P), and separated into three particle-size fractions. Distribution of particle-size fractions was similar between CB and SC as both practices generally collect the coarser fraction of solid materials (greater than 125 micrometers in diameter). In the fall, however, the range of the coarser fraction of materials increased. This is attributed to the ability of SC to collect leaves and other light organic materials that commonly pass through a CB system designed to trap heavier materials. Total organic carbon, total Kjeldahl nitrogen, and total P concentrations were highest in the catch-basin samples in the fall of 2017, and concentrations in the SC samples were highest in the fall of 2018. The collection of fewer samples in 2017 may account for some of the variability between fall 2017 and fall 2018 results. A subset of SC samples collected from piles representing specific street-cleaning routes in September and November 2018 were also analyzed. Materials collected in November were dominated by leaves, and the concentrations of the analyzed species of carbon, nitrogen, and phosphorus in some samples were more than double those in samples collected on the same street-cleaning routes in September. The Vermont Department of Environmental Conservation and the University of Vermont developed estimates of load-reduction credits for CB and SC practices based on a policy developed by the Wisconsin Department of Natural Resources that determined the potential for credits associated with leaf-removal activities. This process also considered BMPs that were initiated during the U.S. Environmental Protection Agency’s Lake Champlain Basin Total Maximum Daily Load monitoring period (2000 to 2009) and adapted the Wisconsin Department of Natural Resources policies to apply to existing SC routes in the cooperating Vermont municipalities that possessed at least 17 percent tree cover. This exercise demonstrated that applying the Wisconsin Department of Natural Resources policy to existing street-cleaning routes possessing 17 percent or more tree cover would result in reductions in total P loads up to 65 percent of mandated target reductions, and about a 25 percent reduction on average. Continuous simulations of stormwater runoff volume, and of loads of suspended sediments and total P, also were created for Englesby Brook Basin, an urbanized basin in Burlington and South Burlington that drains to Lake Champlain. Although the basin is more developed than the average of the nine cooperating municipalities, streamflow and P loading data collected by the U.S. Geological Survey were available to evaluate model performance. Simulations based on a year of average climatic conditions projected potential small reductions in total P of 0.08 to 0.10 percent as a result of CB cleaning and SC practices. Simulated weekly SC practices, however, reduced street-solid loads by as much as 7 percent. When the proportion of total P seen in fall SC materials collected in Vermont was applied to these simulated street-solid loads, estimated reductions of total P were about 29 percent. The combination of analytical results, estimated load-reduction credits, and simulated reductions indicate that targeted increases of SC activities to reduce leaf loading in the fall have the potential to reduce loading to receiving waters and could help regulated communities meet their water-quality goals.

Vermont↗

USGS1973

Floods in New York, 1971

This report, for the calendar year 1971, was prepared at the request of the New York State Department of Transportation under provisions of an agreement between the New York State Department of Environmental Conservation and the U.S. Geological Survey fore a cooperative statewide program investigate the water resources of the State. The report was complied in the New York, Water Resources Division, U.S. Geological Survey, under the direction of Robert J. Dingman, District Chief. The information was obtained from newspaper clippings, publications of the National Weather Service, and the Environmental Data Service, and the Environmental Data Service of the National Oceanic and Atmospheric Administration ("Climatological Data" and "Storm Data"), and records of the U.S. Geological Survey.

New York↗

USGS2026

Small creatures, big challenge: A review of current knowledge and assessment of research needs to inform water withdrawal management for the Duck River's freshwater mussel fauna

The Duck River is a remarkable national resource, boasting outstanding biodiversity (Ahlstedt et al. 2017). It contains 151 fish species, over 60 mussel species, and 22 snail species, many of which are federally listed (Etnier and Starnes 1993; Johnson et al. 2013; Ahlstedt et al. 2017; Womble and Rosenberger 2025a). The Duck River watershed is at a pivotal time in its management and ecological history due to significant growth in human population and economic activity. The consequent increase in surface water demand presents challenges for sustainable water resource management. The Tennessee Department of Environment and Conservation (TDEC) has permitted or proposed to permit eight water utilities to withdraw over 77 million gallons per day (mgd) from the Duck River, representing > 40% increase from previously permitted amounts (USFWS 2025). On November 20, 2024, Tennessee Governor Bill Lee signed Executive Order No 108 to ensure long-term stability of the Duck River watershed through balancing economic growth, water resource management, and environmental conservation. Some primary components of this plan are the creation of a Comprehensive Regional Drought Management Plan, the development of a Habitat Conservation Plan, and the establishment of the Duck River Watershed Planning Partnership (DRWPP). Although the planning partnership is not focused on a sole aspect of the Duck River, but the watershed as a whole, the mussel assemblages of the Duck River have been a particular focus due to their importance in providing ecosystem services, sensitivity to water quality, conservation status, and sensitivity to periodic drought conditions in this system. With multiple state and federal agencies involved in managing the Duck River’s unique water resources, a focused review on how future water management could affect the freshwater mussel communities in the Duck River will contribute to this process. Our objectives of this review are to: 1. Review the effects of changing flow regimes on mussels, with emphasis on the effect of droughts/low flows, highlighting key processes/factors affecting mussels. 2. Highlight critical data gaps that could allow future, evidence-based water management decisions in this system. 3. Propose research topics to address critical data gaps and enable evidence-based water management decisions that consider the needs of freshwater mussels. Freshwater mussels are a critical component of riverine ecosystems, providing ecosystem services including water filtration, nutrient cycling, and habitat provision (Vaughn et al. 2004; Haag 2012) that benefit human communities. Environmental flows, also referred to as ecological or e-flows, refer to the quantity, timing, and quality of water flows necessary to maintain the ecological health of rivers, wetlands, and other aquatic ecosystems (Acreman and Dunbar 2004; Acreman 2016). For freshwater mussels, environmental flows include maintaining a flow regime and associated water quality regimes that are favorable for both juveniles and adults while also seasonally supporting host fish and the survival of settling glochidia (i.e., larval mussels) in suitable environments (Gates et al. 2015). Freshwater mussels are adapted to the natural flow regime of their native streams, including seasonal variability in flows. As sedentary filter feeders, mussels require adequate water flow to provide oxygen and food (Allen and Vaughn 2009); however, they also require periods of low flow to increase access to fish hosts and to ensure juveniles are not displaced (Gates et al 2015). Mussels are sensitive to water quality conditions, including pollutants, sedimentation, and artificial alterations of temperature and pH (Strayer and Malcom 2012). Mussel community characteristics, including presence, abundance, and species richness, generally increase with stream size (e.g., stream order); however, responses to changes in flow conditions are often species-specific, and the magnitude and timing of extreme flow conditions have more predictive power for mussel community response than general changes in flow (Lopez and Vaughn 2021). Complex hydraulic variables, such as relative shear stress and Reynolds number, can be strong predictors of mussel community responses because they combine simple hydraulic variables (e.g., velocity, depth) with stream channel characteristics, such as substrate composition and dynamics. Droughts directly and indirectly affect mussels by influencing their physiology, behavior, reproduction, and ecosystem roles. Mass mussel die-offs during droughts and low water conditions are widely documented (Vaughn et al. 2015; Sousa et al. 2018; Dubose et al. 2019). Droughts can also lead to a shift in mussel community composition, with drought-tolerant species becoming more dominant while more sensitive species experience declines (Galbraith et al, 2010; Lopez et al. 2022; Vaughn and Atkinson 2025). Droughts affect mussels through direct mortality from stranding as well as physiological stress from altered water temperature and quality, reduced habitat and food availability and quality, increased predation and competition, disruption of reproductive cycles, and increased susceptibility to disease and pathogens. Although the effects of droughts, water withdrawals, and low flow conditions on mussels are an increasing area of study, there is a general paucity of data-driven consensus regarding optimal mitigation approaches and strategies (Cushway et al. 2024). Long-term management decisions regarding water withdrawals, particularly during extended or multi-year drought conditions, may consider factors beyond direct mortality such as the sublethal effects of drought and low flow conditions on freshwater mussels for a comprehensive understanding of the effects of prolonged low flows on freshwater mussels and aquatic communities.

Tennessee↗

USGS2024

Evaluation of sensors for continuous monitoring of harmful algal blooms in the Finger Lakes region, New York, 2019 and 2020

In response to the increasing frequency of cyanobacterial harmful algal blooms (CyanoHABs) in the Finger Lakes region of New York State, a pilot study by the U.S. Geological Survey, in collaboration with the New York State Department of Environmental Conservation, was conducted to enhance CyanoHAB monitoring and understanding. High-frequency sensors were deployed on open water monitoring-station platforms at Seneca Lake in 2019–20, at Owasco Lake in 2019–20, and at Skaneateles Lake in 2019. One of the goals of this study was to evaluate the ability of in-place sensors to make representative measurements of dissolved organic matter, nutrients, and algal pigments (as indicators of phytoplankton biomass) while collecting routine field parameters (water temperature, specific conductance, pH, dissolved oxygen, turbidity, weather, and light) to provide additional information about environmental conditions. Despite challenges like power issues and sensor fouling, the sensors performed well overall. However, correlation analyses between sensor readings and laboratory measurements revealed variable performance. Results indicate the relation between the fluorescent dissolved organic matter sensor and laboratory-measured dissolved organic carbon was weak at all study lakes. The nitrate sensors can be sensitive to ambient temperature and have a substantial power requirement, and the relation between sensor- and laboratory-measured nitrate values differed among lakes. The orthophosphate sensors, which were complex and prone to data loss, yielded results that were difficult to interpret because orthophosphate detections are rare in the study lakes. The multichannel fluorometer was also complex to use and required several unique procedures for its operation. Chlorophyll measurements from the fluorometers correlated moderately well with laboratory-measured chlorophyll- a , although relations with total phytoplankton biovolume were weaker. Relations between phycocyanin concentration measurements from the dual-channel fluorometers and cyanobacterial biovolume were not significant; however, the cyanobacterial biovolume correlation was moderately strong with chlorophyll contribution from cyanobacteria measurements from the multichannel fluorometer. Of all collected parameters, water temperature was among the strongest correlated with chlorophyll- a , total phytoplankton biovolume, and cyanobacterial biovolume. Stepwise regression analysis was used to identify the best parameters for modeling variance in laboratory measures of phytoplankton biomass. This analysis included factors such as chlorophyll fluorescence, pH, water temperature, and others, which varied by lake. Overall, the models had limited explanatory power for chlorophyll- a and other biovolumes, possibly due to the absence of CyanoHABs at the open-water monitoring locations. Multivariate models did not outperform simple fluorescence-based models. Notably, turbidity was a more significant indicator of cyanobacterial biovolume variability than phycocyanin from dual-channel fluorometers. The study concludes that while single and multivariate models based on sensor data are useful, they did not explain any more variance than fluorescence-based models. Broader data collection, including more CyanoHAB events, is necessary to refine these models. Integrating machine learning could leverage large, complex datasets to improve CyanoHAB predictions, thereby enhancing the management and understanding of these blooms.

New York↗

USGS2024

Pasture and diurnal temperature are key predictors of regional Plains Spotted Skunk (Spilogale interrupta) distribution

The Plains Spotted Skunk ( Spilogale interrupta ) is a small carnivore native to central North America that has experienced significant population reductions, and there is a lack of information about the species that could inform conservation. Our study aimed to address knowledge gaps about the distribution and habitat associations of the species in South Dakota using species distribution modeling. We used species location data collected from state natural resource managers, trappers, and members of online social media groups dedicated to hunting and wildlife conservation; environmental predictors; and 6 predictive modeling algorithms (i.e., artificial neural networks, artificial classification tree analysis, generalized boosting models, maximum entropy, multivariate adaptive regression splines, and random forests) to develop climate and landcover ensemble distribution models. The most important climate and landcover predictors were mean temperature diurnal range (i.e., average monthly differences between daily high and low temperatures) and proportion of area classified as pasture. Ensemble model concordance identified approximately 31,300 km 2 of potential Plains Spotted Skunk habitat primarily in eastern South Dakota and between the watersheds of the Missouri and James rivers. Our results offer insights that can guide conservation and inform effective management strategies for conserving Plains Spotted Skunk populations in the northern Great Plains. The promotion of low-intensity agricultural practices such as maintaining pastures, farm buildings, fences rows, and the management of woodland encroachment may improve habitat suitability and facilitate the recovery of plains spotted skunks in the region.

South Dakota↗

USGS2009

Sustaining visitor use in protected areas: Future opportunities in recreation ecology research based on the USA experience

Recreation ecology, the study of environmental consequences of outdoor recreation activities and their effective management, is a relatively new field of scientific study having emerged over the last 50 years. During this time, numerous studies have improved our understanding of how use-related, environmental and managerial factors affect ecological conditions and processes. Most studies have focused on vegetation and soil responses to recreation-related trampling on trails and recreation sites using indicators such as percent vegetation cover and exposed mineral soil. This applied approach has and will continue to yield important information for land managers. However, for the field to advance, more attention needs to be given to other ecosystem attributes and to the larger aspects of environmental conservation occurring at landscape scales. This article is an effort at initiating a dialog on needed advances in the field. We begin by reviewing broadly generalizable knowledge of recreation ecology, to separate what is known from research gaps. Then, based on the authors’ perspective of research in the USA and North America, several research directions are suggested as essential for continued progress in this field including theoretical development, broadening scale, integration with other disciplines, and examination of synergistic effects.

Environmental Management↗

USGS2019

Biases in the literature on direct wildlife mortality from energy development

Comparing environmental impacts of different energy sources can inform energy investments and environmental conservation. Direct wildlife mortality from energy development receives substantial public and scientific attention, but it is unclear whether rigorous comparisons of mortality among energy sources are possible. To address this question, we compared availability of mortality studies among energy sources, wildlife groups, and regions, and assessed comparability of mortality indicators measured. Whereas wind and hydropower have received substantial mortality research exceeding their proportional contributions to global energy production, coal, oil and gas, and bioenergy have received fewer studies and are underrepresented relative to their contributions. Furthermore, research is biased toward birds and fish and North America and Europe, and there are inconsistencies among energy sources and limited replication of most indicators measured. These results indicate that rigorous comparisons of direct wildlife mortality among energy sources are not currently possible and highlight research needs for improving understanding of energy's environmental impacts.

BioScience↗

USGS2007

Ground-Water Quality in the Delaware River Basin, New York, 2001 and 2005-2006

The Federal Clean Water Act Amendments of 1977 require that States monitor and report on the quality of ground water and surface water. To satisfy part of these requirements, the U.S. Geological Survey and New York State Department of Environmental Conservation have developed a program in which ground-water quality is assessed in 2 to 3 of New York State's 14 major basins each year. To characterize the quality of ground water in the Delaware River Basin in New York, water samples were collected from December 2005 to February 2006 from 10 wells finished in bedrock. Data from 9 samples collected from wells finished in sand and gravel in July and August 2001 for the National Water Quality Assessment Program also are included. Ground-water samples were collected and processed using standard U.S. Geological Survey procedures. Samples were analyzed for more than 230 properties and compounds, including physical properties, major ions, nutrients, trace elements, radon-222, pesticides and pesticide degradates, volatile organic compounds, and bacteria. Concentrations of most compounds were less than drinking-water standards established by the U.S. Environmental Protection Agency and New York State Department of Health; many of the organic analytes were not detected in any sample. Drinking-water standards that were exceeded at some sites include those for color, turbidity, pH, aluminum, arsenic, iron, manganese, radon-222, and bacteria. pH ranged from 5.6 to 8.3; the pH of nine samples was less than the U.S. Environmental Protection Agency secondary drinking-water standard range of 6.5 to 8.5. Water in the basin is generally soft to moderately hard (hardness 120 milligrams per liter as CaCO3 or less). The cation with the highest median concentration was calcium; the anion with the highest median concentrations was bicarbonate. Nitrate was the predominant nutrient detected but no sample exceeded the 10 mg/L U.S. Environmental Protection Agency maximum contaminant level. The trace elements detected with the highest median concentrations were strontium and iron in unfiltered water and strontium and barium in filtered water. Concentrations of trace elements in several samples exceeded U.S. Environmental Protection Agency secondary drinking-water standards, including aluminum (50-200 micrograms per liter, three wells), arsenic (10 micrograms per liter, one well), iron (300 micrograms per liter, three wells), and manganese (50 micrograms per liter, four wells). The median concentration of radon-222 was 1,580 picoCuries per liter. Radon-222 is not currently regulated, but the U.S. Environmental Protection Agency has proposed a maximum contaminant level of 300 picoCuries per liter along with an alternative maximum contaminant level of 4,000 picoCuries per liter, to be in effect in states that have programs to address radon in indoor air. Concentrations of radon-222 exceeded the proposed maximum contaminant level in all 19 of the samples and exceeded the proposed alternative maximum contaminant level in 1 sample. Eleven pesticides and pesticide degradates were detected in samples from ten wells; all were herbicides or herbicide degradates. Three volatile organic compounds were detected, including disinfection byproducts such as trichloromethane and gasoline components or additives such as methyl tert-butyl ether. No pesticides, pesticide degradates, or volatile organic compounds were detected above established limits. Coliform bacteria were detected in samples from five wells, four of which were finished in sand and gravel; Escherichia coli was not detected in any sample.

Open-File Report↗

USGS2020

An ecological and conservation perspective

Natural ecosystems are facing unprecedented threats which directly threaten human well-being through decreases in critical ecosystem services (IPBES 2019). The top five drivers causing the largest global impacts to biodiversity and ecosystem services include: 1) changes in land and sea use; 2) direct exploitation of organisms; 3) climate change; 4) pollution, and 5) invasive alien species (IPBES 2019). Although One Health acknowledges the link between the health of humans, animals, and the environment, One Health discussions have historically focused on the prevention and control of infectious disease at the human-animal interface rather than these large-scale drivers of health. While One Health has succeeded in bringing awareness to the need for proactive disease control measures such as strengthened biosecurity and vaccine development (e.g., Machalaba et al., 2018; Middleton et al., 2014), disease is only one component of health. In this chapter, we explore the potential for One Health to shift its focus from disease prevention to health promotion to more fully integrate solutions that protect the health of humans, animals, and the ecosystems on which we all depend for our economies, livelihoods, food security, and health. This shift will facilitate a more seamless inclusion of ecological health and environmental conservation in the One Health paradigm and can serve as the basis for a comprehensive approach to complex problems at the root of global health. We also suggest a framework for creating and applying health metrics for wildlife and ecological systems that will be essential for measuring the success of actions aimed at maintaining or shifting systems to desired states.

Book chapter↗

USGS2007

Ground-Water Quality in the St. Lawrence River Basin, New York, 2005-06

The Federal Clean Water Act requires that States monitor and report on the quality of ground water and surface water. To satisfy part of these requirements, the U.S. Geological Survey and New York State Department of Environmental Conservation have developed a program in which ground-water quality is assessed in 2 to 3 of New York State's 14 major river basins each year. To characterize the quality of ground water in the St. Lawrence River Basin in northern New York, water samples were collected from 14 domestic and 11 production wells between August 2005 and January 2006. Eight of the wells were finished in sand and gravel and 17 wells were finished in bedrock. Ground-water samples were collected and processed using standard U.S. Geological Survey procedures and were analyzed for 229 constituents and physical properties, including inorganic constituents, nutrients, trace elements, radon-222, pesticides and pesticide degradates, volatile organic compounds, and bacteria. Sixty-six constituents were detected above laboratory reporting levels. Concentrations of most compounds at most sites were within drinking water standards established by the U.S. Environmental Protection Agency and New York State Department of Health, but a few compounds exceeded drinking water standards at some sites. Water in the basin is generally hard to very hard (hardness equal to 121 mg/L as CaCO3 or greater); hardness and alkalinity were generally higher in the St. Lawrence Valley than in the Adirondack Mountains. The cation with the highest median concentration was calcium; the anion with the highest median concentration was bicarbonate. The concentration of chloride in one sample exceeded the 250 milligrams per liter U.S. Environmental Protection Agency Secondary Drinking Water Standard; the concentration of sulfate in one sample also exceeded the 250 milligrams per liter U.S. Environmental Protection Agency Secondary Drinking Water Standard. Nitrate was the predominant nutrient detected but no sample exceeded the 10 mg/L U.S. Environmental Protection Agency Maximum Contaminant Level. The trace elements detected with the highest median concentrations were strontium, barium, and iron. Concentration of trace elements in several samples exceeded U.S. Environmental Protection Agency Secondary Drinking Water Standards, including aluminum (50 micrograms per liter, 4 samples), iron (300 micrograms per liter, 5 samples), and manganese (50 micrograms per liter, 4 samples). The concentration of uranium in one sample from a domestic well finished in crystalline bedrock was three times the U.S. Environmental Protection Agency Maximum Contaminant Level of 30 micrograms per liter. The median concentration of radon-222 was 600 picoCuries per liter, but concentrations as high as 18,800 picoCuries per liter were detected; two wells with high radon concentrations also had high uranium concentrations. Radon-222 is not currently regulated, but the U.S. Environmental Protection Agency has proposed a Maximum Contaminant Level of 300 picoCuries per liter along with an Alternative Maximum Contaminant Level of 4,000 picoCuries per liter, to be in effect in states that have programs to address radon in indoor air. Concentrations of radon-222 exceeded the proposed Maximum Contaminant Level in 60 percent of samples and exceeded the proposed Alternative Maximum Contaminant Level in 8 percent of samples. Six pesticides and pesticide degradates were detected; all were amide or triazine herbicides or degradates. Five volatile organic compounds were detected, including disinfection byproducts such as trichloromethane and gasoline components or additives such as methyl tert-butyl ether. No pesticides, pesticide degradates, or volatile organic compounds were detected above established limits. Coliform bacteria, including Escherichia coli, were detected in three wells finished in carbonate bedrock.

Open-File Report↗

USGS2025

Reservoir operational strategies for sustainable sand management in the Colorado River

Climate change and increasing societal demands for water pose challenges for the management of dam-regulated rivers. Management decisions impact the environment of these rivers, creating the need to balance societal needs with environmental conservation. Here we present a modeling framework that optimizes resource benefits within imposed water use goals for the Colorado River in Grand Canyon, where sandbars are a valued natural feature. The current sand-management paradigm utilizes controlled dam-release floods to build and maintain sandbars without exhausting the limited sand supplied by tributaries downstream from Glen Canyon Dam, which blocks all sand supplied from upriver. High monthly releases outside of controlled floods erode sandbars and cause net sand export from Grand Canyon, reducing the sand available to build sandbars. Releases are high in some months owing to the need to adjust flows to meet annual delivery targets, which can be updated throughout the year. Here, we present alternative strategies for operations that avoid high releases, while meeting water storage and delivery goals. We test these strategies using a simplified reservoir model which accounts for forecast uncertainty. We show how these strategies affect sand mass balance and sandbar size using previously developed models. Strategies optimal for sustainable sandbar building maintained sufficient reservoir elevations for implementing controlled floods, avoided high monthly releases by relaxing annual release constraints, and implemented controlled floods in fall immediately following tributary sand inputs. Coordinated modeling of reservoir operations and environmental resources is valuable for managers seeking to balance societal and environmental needs in regulated rivers worldwide.

Arizona↗

USGS2020

Statewide assessment of karst aquifers in New York with an inventory of closed-depression and focused-recharge features

Karst is a landscape formed from the dissolution of soluble rock or rock containing minerals that are easily dissolved from within the rock. The landscape is characterized by sinkholes, caves, losing streams, springs, and underground drainage systems, which rapidly move water through the karst. The two forms of karst in New York State include carbonate karst, which forms in carbonate rock (limestone, marble, and dolostone), and evaporite karst, which forms in rock that contains the evaporite minerals gypsum and halite. Past and recent studies of karst across the State have shown that areas of focused recharge in karstic carbonate rock allow contaminants to enter aquifer systems with little attenuation. Focused areas of recharge need to be identified to help prevent such contamination from sources on or adjacent to the karst. The New York State Departments of Environmental Conservation and Health are collaborating with the agricultural community to make farmers and farm-planning advisors more aware of karst and how to manage daily farming activities to reduce their impact on surface water and groundwater resources, especially in karst areas. There is also a need to make regulators, planners, and the general public aware of New York’s karst resources and to properly protect and manage these resources to protect the quality of groundwater and surface water that can flow into, through, and from karst bedrock. Using publicly available geospatial data, karst bedrock and closed depressions over or near karst rock were identified across New York. Carbonate, evaporite, and marble geologic units were selected from a statewide 1:250,000-scale bedrock geology dataset. The selected geologic units were intersected with 7.5-minute quadrangle maps to define the study area. The U.S. Geological Survey has compiled an inventory of closed depressions from statewide digital contour data, scanned 7.5-minute topographic maps known as a digital raster graphics, and light detection and ranging (lidar) digital elevation models. Analysis of the data resulted in the identification of 5,023 closed depressions statewide. The inventory was conducted to eliminate duplication of results from analysis of the three data sources. A series of overlay analyses was conducted using the closed depressions and thematic data known to be key factors in determining the probability of a closed depression contributing to focused groundwater recharge; the thematic data include bedrock geology, soil type, soil infiltration rate, and land cover. Though the extent of karst development is important in understanding the interaction between surface water and groundwater in karst terrains, some of the worst cases of groundwater contamination in karst can occur where only minor karst features might be present. The presence of karst—be it a short section of a solutioned fracture or an extensive cave system—requires careful consideration, forward-looking environmental planning, and consistent water-quality protection to preserve New York State’s water resources.

New York↗

USGS2022

Geohydrology and water quality of the northern and central parts of the Tug Hill glacial aquifer, Jefferson and Oswego Counties, north-central New York

The northern and central parts of the Tug Hill glacial aquifer consist of a 29-mile-long, crescent-shaped, mixture of glaciofluvial, glaciolacustrine, and recent alluvial deposits of predominantly sand and gravel on the western side of the Tug Hill Plateau in Jefferson and Oswego Counties in north-central New York. Approximately 11,400 people are supplied by groundwater that is withdrawn from municipal and nonmunicipal wells in the northern and central parts of the aquifer. In addition, many farms, several industries, and a large New York State fish hatchery also rely on the water from the aquifer. In the early 2000s, anticipated developmental pressures from potential new industries (including a proposed water-bottling plant in the central part of the Tug Hill glacial aquifer) and expansion of the Fort Drum military base north of Watertown (with the projected increase in population extending into the northern part of the aquifer) prompted the Tug Hill Commission, local municipal officials, and representatives from the New York State Department of Environmental Conservation to initiate a geohydrologic study with the U.S. Geological Survey. The information from this study is intended to help the state, counties, and local communities make sound policy decisions about their use of this large groundwater resource. The northern part of the Tug Hill glacial aquifer is a combination of glaciofluvial outwash and alluvial sand and gravel in the Sandy Creek Valley northeast of Adams, New York, and mostly glaciolacustrine beach and deltaic sand or sand and gravel north and south of the village of Adams. The southern and eastern areas of the central part of the aquifer are composed mostly of glaciofluvial sediments such as kames, kame moraines, and kame terraces, whereas most of the western areas of the central part are composed mostly of glaciolacustrine sediments such as deltaic sand and beach sand and gravel. The northern and central parts of the aquifer are unconfined. Recharge to the northern and central parts of the aquifer is from three main sources: (1) precipitation that falls directly onto the aquifer; (2) unchannelized runoff (overland flow) and groundwater from till and bedrock in the Tug Hill Plateau that seeps into the eastern side of the aquifer; and (3) streams that drain the Tug Hill Plateau and flow across and lose water to the aquifer. Groundwater discharges to springs, seeps, headwaters of streams, and wetlands in the middle area of the central part of the aquifer and along the entire western boundary of the northern and central parts of the aquifer; pumping wells; artificial ditches; and deeply incised streams in the northern and central parts of the aquifer. The groundwater discharge to such streams is critical in supporting the salmonid fishery in the central part of the aquifer. Groundwater levels were measured on July 17, 2014, at 22 wells throughout the northern and central parts of the aquifer. Water-table contours were drawn on the basis of the measured July 2014 water levels, historical water-level data, and surface-water levels where surface water in the channels was expected to be hydraulically connected to the groundwater system. The water table generally slopes from east to west throughout the northern and central parts of the aquifer; this slope also indicates that the direction of groundwater flow is generally from east to west. Water-quality samples were collected from 23 stream sites during base-flow conditions, and groundwater-quality and other types of environmental samples were collected from 20 wells in the northern and central parts of the Tug Hill glacial aquifer. The results of the sampling indicate that surface water and groundwater are generally of good quality. Comparison of the median concentration values of major ions in groundwater samples indicated that hardness in the northern part of the aquifer was about twice as great, and concentrations of calcium and sodium were more than three times as great, as in the central part of the aquifer. As was the case with surface water, the much greater median concentrations in groundwater of calcium, hardness, and alkalinity in the northern part of the aquifer are due to the dissolution of limestone that underlies most of that area and to the high-carbonate content of the clasts in the sand and gravel. There was little to no difference among the median values for bromide, fluoride, silica, and iron in the two parts of the aquifer. Concentrations of most other major ions were slightly greater in the northern part than in the central part of the Tug Hill glacial aquifer, except for magnesium, whose concentration was greater in the central part. Median concentrations of nutrients were generally greatest in surface water and groundwater in the northern part of the aquifer.

New York↗

USGS2016

Management decision making for fisher populations informed by occupancy modeling

Harvest data are often used by wildlife managers when setting harvest regulations for species because the data are regularly collected and do not require implementation of logistically and financially challenging studies to obtain the data. However, when harvest data are not available because an area had not previously supported a harvest season, alternative approaches are required to help inform management decision making. When distribution or density data are required across large areas, occupancy modeling is a useful approach, and under certain conditions, can be used as a surrogate for density. We collaborated with the New York State Department of Environmental Conservation (NYSDEC) to conduct a camera trapping study across a 70,096-km 2 region of southern New York in areas that were currently open to fisher ( Pekania [ Martes ] pennanti ) harvest and those that had been closed to harvest for approximately 65 years. We used detection–nondetection data at 826 sites to model occupancy as a function of site-level landscape characteristics while accounting for sampling variation. Fisher occupancy was influenced positively by the proportion of conifer and mixed-wood forest within a 15-km 2 grid cell and negatively associated with road density and the proportion of agriculture. Model-averaged predictions indicated high occupancy probabilities (>0.90) when road densities were low (<1 km/km 2 ) and coniferous and mixed forest proportions were high (>0.50). Predicted occupancy ranged 0.41–0.67 in wildlife management units (WMUs) currently open to trapping, which could be used to guide a minimum occupancy threshold for opening new areas to trapping seasons. There were 5 WMUs that had been closed to trapping but had an average predicted occupancy of 0.52 (0.07 SE), and above the threshold of 0.41. These areas are currently under consideration by NYSDEC for opening a conservative harvest season. We demonstrate the use of occupancy modeling as an aid to management decision making when harvest-related data are unavailable and when budgetary constraints do not allow for capture–recapture studies to directly estimate density.

Journal of Wildlife Management↗

USGS2011

A westward extension of the warm pool leads to a westward extension of the Walker circulation, drying eastern Africa

Observations and simulations link anthropogenic greenhouse and aerosol emissions with rapidly increasing Indian Ocean sea surface temperatures (SSTs). Over the past 60 years, the Indian Ocean warmed two to three times faster than the central tropical Pacific, extending the tropical warm pool to the west by ~40° longitude (>4,000 km). This propensity toward rapid warming in the Indian Ocean has been the dominant mode of interannual variability among SSTs throughout the tropical Indian and Pacific Oceans (55°E–140°W) since at least 1948, explaining more variance than anomalies associated with the El Niño-Southern Oscillation (ENSO). In the atmosphere, the primary mode of variability has been a corresponding trend toward greatly increased convection and precipitation over the tropical Indian Ocean. The temperature and rainfall increases in this region have produced a westward extension of the western, ascending branch of the atmospheric Walker circulation. Diabatic heating due to increased mid-tropospheric water vapor condensation elicits a westward atmospheric response that sends an easterly flow of dry air aloft toward eastern Africa. In recent decades (1980–2009), this response has suppressed convection over tropical eastern Africa, decreasing precipitation during the ‘long-rains’ season of March–June. This trend toward drought contrasts with projections of increased rainfall in eastern Africa and more ‘El Niño-like’ conditions globally by the Intergovernmental Panel on Climate Change. Increased Indian Ocean SSTs appear likely to continue to strongly modulate the Warm Pool circulation, reducing precipitation in eastern Africa, regardless of whether the projected trend in ENSO is realized. These results have important food security implications, informing agricultural development, environmental conservation, and water resource planning.

Climate Dynamics↗

USGS2016

Response of fish assemblages to declining acidic deposition in Adirondack Mountain lakes, 1984–2012

Adverse effects of acidic deposition on the chemistry and fish communities were evident in Adirondack Mountain lakes during the 1980s and 1990s. Fish assemblages and water chemistry in 43 Adirondack Long-Term Monitoring (ALTM) lakes were sampled by the Adirondack Lakes Survey Corporation and the New York State Department of Environmental Conservation during three periods (1984–87, 1994–2005, and 2008–12) to document regional impacts and potential biological recovery associated with the 1990 amendments to the 1963 Clean Air Act (CAA). We assessed standardized data from 43 lakes sampled during the three periods to quantify the response of fish-community richness, total fish abundance, and brook trout ( Salvelinus fontinalis) abundance to declining acidity that resulted from changes in U.S. air-quality management between 1984 and 2012. During the 28-year period, mean acid neutralizing capacity (ANC) increased significantly from 3 to 30 μeq/L and mean inorganic monomeric Al concentrations decreased significantly from 2.22 to 0.66 μmol/L, yet mean species richness, all species or total catch per net night (CPNN), and brook trout CPNN did not change significantly in the 43 lakes. Regression analyses indicate that fishery metrics were not directly related to the degree of chemical recovery and that brook trout CPNN may actually have declined with increasing ANC. While the richness of fish communities increased with increasing ANC as anticipated in several Adirondack lakes, observed improvements in water quality associated with the CAA have generally failed to produce detectable shifts in fish assemblages within a large number of ALTM lakes. Additional time may simply be needed for biological recovery to progress, or else more proactive efforts may be necessary to restore natural fish assemblages in Adirondack lakes in which water chemistry is steadily recovering from acidification.

New York↗

USGS2016

Predation on Pacific salmonid eggs and carcass's by subyearling Atlantic salmon in a tributary of Lake Ontario

A binational effort to reintroduce Atlantic salmon ( Salmo salar ) that were extirpated in the Lake Ontario ecosystem for over a century is currently being undertaken by the New York State Department of Environmental Conservation and the Ontario Ministry of Natural Resources. Reintroduction actions include the release of several life stages including fry, fall fingerlings, and yearling smolts. In this study we describe the diet of recently released fall fingerling Atlantic salmon in a tributary of the Salmon River, New York. A specific objective of the study was to determine if juvenile Atlantic salmon would utilize the high caloric food source provided by introduced Pacific salmonids ( Oncorhynchus spp .) that includes eggs and carcass flesh. Salmon eggs and carcass flesh comprised 20.5% of the October to January diet in 2013–14 and 23.9% in 2014–15. The consumption of steelhead ( O. mykiss ) eggs was a major part of the diet in April in both 2014 (54.1%) and 2015 (33.2%). This study documented that recently released Atlantic salmon will consume the high caloric food material provided by Pacific salmonids and that the consumption of this material extends for several months.

New York↗

USGS2002

Practical application of disease resistance: A brook trout fishery selected for resistance to furunculosis

Selection is unwittingly influenced by nuances of fish culturists and adaptation of fish to intensive culture within artificial environments. When pathogens are present, susceptible individuals may be selectively eliminated from a population, accounting for inter-specific and intra-specific differences in susceptibility to disease. Biologists often intensify such selection to enhance resistance. Particularly important to this discourse is the selective breeding program initiated by the New York State Department of Environmental Conservation (Rome, NY, USA) to produce brown trout ( Salmo salar ) and brook trout ( Salvelinus fontinalis ) that are resistant to Aeromonas salmonicida . This program, specifically as it relates to brook trout, is reviewed throughout the current manuscript. In addition, we present a comparison between the performance of the Rome strain of brook trout to that of the Owhi strain of brook trout during a 17-month production cycle at the Ed Weed Fish Culture Station (Grand Isle, VT, USA) and after stocking into Vermont waters. The Owhi strain is used in recreational fisheries because it has good post-stocking survival, but these fish are sensitive to furunculosis. Our data indicated that the Rome strain had a food conversion rate of 1.3 that was slightly less than the 1.1 conversion rate of the Owhi brook trout. The growth rate measured as Monthly Temperature Units per inch (MTU/in.) among Rome brook trout (24.9 MTU/in.) was better than the Owhi brook trout (29.5 MTU/in.). Both the average length (23.6 cm) and weight (159.7 g) of individual Rome brook trout were superior to those of the Owhi strain (20.4 cm and 78.2 g, respectively). Just prior to stocking, survival within the hatchery was 84% among the Rome trout, but only 51% among the Owhi brook trout and mortality was attributed to a persistent epizootic of furunculosis. Microbiological assays indicated that the prevalence of A. salmonicida in dermal mucus attained equivalent levels within both strains of fish at different phases of the production cycle. The level of systemic infection, however, was regulated to a much greater extent by the Rome strain of brook trout throughout production. Our results indicated that the Rome brook trout strain satisfies management objectives for establishing an effective recreational brook trout fishery. Use of this strain also reduces management issues that complicate production when A. salmonicida is enzootic.

Vermont↗