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Estimation of parental abundance using hierarchical Bayesian modeling with data augmentation

Pedigree-based estimation methods leverage the fact that each offspring in a cohort is genotypically “marked” by its parents and represent a recent and promising toolset for estimating population dynamics. This includes pedigree accumulation estimators that model the “accumulation” of inferred unique parents within a given cohort to estimate parental abundance. Unlike close-kin mark-recapture approaches, which rely on intercohort comparisons, pedigree accumulation modeling can be completed solely using intracohort samples. This is particularly advantageous for semelparous species, where intercohort pairs are impossible and adult life stages can be difficult to sample without affecting their likelihood of successfully reproducing. Previous work has evaluated a range of estimators for such datasets, concluding that the non-parametric Chao estimator provides the most accurate and precise estimates for feasible levels of sampling effort. We used simulated data to evaluate an alternative estimator based on hierarchical modeling and data augmentation in a Bayesian framework. Results indicate that estimates from the hierarchical Bayesian estimator had comparable accuracy and better precision than both the previously tested Chao1 estimator and the improved iChao formulation across a range of sample sizes and sex ratios. Furthermore, the Bayesian estimator was far more robust to simulated errors in pedigree reconstruction, especially the presence of false negatives. Hierarchical Bayesian pedigree accumulation models can also provide additional insight into underlying reproductive ecology through their use of an explicit observation process, allowing for the incorporation or estimation of species- and population-specific reproductive dynamics. More broadly, the parametric nature of these models offers opportunities to efficiently pool information among datasets as well as to propagate uncertainty within more complex models.

Ecology and Evolution

Advancing current understanding of Martian impact-generated hydrothermal systems through novel coupled modeling: Insights from Gale, Jezero, and other craters

Impact-generated hydrothermal systems are considered potentially habitable environments on Mars, Earth, and other planetary bodies for microbial life. However, there is an ongoing debate regarding what geological features on Mars provide definitive evidence for such systems. Although earlier studies have modeled hydrothermal processes in Martian craters, they often lacked integration with shock physics hydrocodes to constrain initial impact conditions. The importance of this two-code coupling was demonstrated by successfully replicating alteration signatures in the Earth's Haughton impact structure. In this study, we use a similar two-code approach, combining the iSALE hydrocode with the HYDROTHERM hydrothermal model to simulate the full evolution of impact-generated hydrothermal systems. We apply this method to craters the size of Jezero (∼50 km) and Gale (∼154 km) in diameter. Although Jezero's interior is largely buried, our results align with hypothesized hydrothermal vents and alteration minerals near central uplifts in similarly sized exposed craters, such as Toro and Auki. Furthermore, our models correspond to alteration patterns observed by the Curiosity in the lower layers of Mount Sharp, which may represent remnants of impact-driven hydrothermal activity. A key finding is that these systems may persist much longer than previously estimated. Our simulations suggest that a Jezero-sized system could remain habitable for thermophiles for approximately 720,000 years, whereas a Gale-sized system could persist for nearly 2 million years. Additionally, simulations under unsaturated crustal conditions reveal that air-dominated near-surface layers can suppress vertical fluid flow, enabling deep subsurface alteration without producing detectable mineral signatures at the surface.

Journal of Geophysical Research - Planets

Conventional hydrothermal power-producing systems of the Great Basin, USA

As part of the update to the electric-grade conventional hydrothermal assessment of the Great Basin, USA, Monte Carlo analyses of identified resources within explored regions will be performed to make estimates of discovered resources and associated uncertainty. Analyses use conditional statistics where estimates are conditioned upon a hydrothermal favorability map, allowing for the likelihood that more resources exist in regions of higher hydrothermal favorability. For these analyses, a dataset of identified hydrothermal systems is compiled, and the new compilation is described herein. Recognizing that a single hydrothermal system may be developed with multiple power plants, and that the hydrothermal upflow zone may be several kilometers across with many measurements characterizing a single hydrothermal system, a procedure was developed and employed to create clusters of points (power plants, measurements, etc.) that are associated with a single system, and a new central point was defined as the best estimator of the center of the hydrothermal system. Hydrothermal systems were uniquely identified by grouping electric-grade hydrothermal measurements and operating power plants within a distance of 10 km. Groups that are >10 km apart are assumed to be different electric-grade hydrothermal systems. While 10 km was used as the threshold, most systems were significantly further apart, and most points within groups were typically within 5 km of each other. A well measurement was considered an electric-grade measurement of a hydrothermal system if it had two properties: a measured temperature of >85 °C and evidence of hydrothermal convection. Other points that were added to the dataset are locations of operating powerplants or locations that have been classified as an electric-grade hydrothermal resource by either the U.S Geological Survey (USGS) or the Great Basin Center for Geothermal Energy. After all points are assigned to systems, new points were computed with the goal of identifying the center of the throat of the hydrothermal upflow zone. If operating powerplants exist for a system, then the arithmetic average of all power plant locations is used. Otherwise, if USGS made an estimate, that location is used. In the absence of both powerplants or USGS estimates, the arithmetic average of all electric-grade measurement locations is used. An example is shown of how these newly compiled locations might be ranked for uncertainty analyses, where higher confidence is assumed if measured temperature is higher and there are many supporting measurements indicating an electric-grade resource. In summary, 28 systems have operating power plants, an additional 78 systems are known identified electric-grade hydrothermal resources, and 99 new systems were identified as probable electric-grade systems with varying levels of confidence. These 205 locations are shown as a function of a recent hydrothermal favorability map, conceptually illustrating the conditional statistics that can be used to make estimates of the undiscovered resources of the Great Basin. An accompanying data release provides summaries of developed capacity by system and USGS estimates of likely total capacity and associated uncertainty.

Arizona, California, Idaho, Nevada, Oregon, Utah

Roadway runoff induced acute mortality in juvenile coho salmon during spring storm events

Extensive mortalities of adult coho salmon ( Oncorhynchus kisutch ), often called “Urban Runoff Mortality Syndrome” (URMS), have been documented during the fall in creeks where water quality has been degraded by roadway runoff. The primary cause of mortality is 6PPD-quinone (6PPDQ; N -(1,3-dimethylbutyl)- N ′-phenyl- p -phenylenediamine quinone)–an ozone transformation product that forms on all vehicle tires. Laboratory studies have shown that juvenile coho salmon are highly sensitive to 6PPDQ exposure. Unlike adults, juveniles reside in impacted watersheds year-round, including during the spring when 6PPDQ concentrations can frequently exceed lethal thresholds during storms. To assess the potential incidence of URMS in springtime rearing habitats for juvenile coho salmon, we conducted a paired water quality and toxicology study at Miller Creek, a runoff-impacted watershed in Normandy Park, WA, USA. Using a small field facility, three naïve groups of juvenile coho salmon ( N = 720) were exposed to either creek water or groundwater ( N = 120 per treatment per storm), across three spring storms while comparing water quality and mortality end points. In creek water during exposures, peak 6PPDQ concentrations reached 73–110 ng/L, exceeding reported median lethal concentrations (LC 50 ) for coho salmon. Over each 24–73 h storm exposure period, ∼80% of Miller Creek-exposed juvenile salmon died. No mortality occurred among control fish exposed to groundwater. These results indicate previously unidentified mortality risks for juvenile life stages of coho salmon during spring storms, suggesting substantial and year-round water quality impediments to coho salmon health and recovery across roadway runoff-impacted spawning, rearing, and migratory habitats.

Washington

Legacy of the fumigant 1,2-dibromo-3-chloropropane (DBCP) in California groundwater

The fumigant pesticide 1,2-dibromo-3-chloropropane (DBCP) was widely used in California agriculture during the 1960s and 1970s before being banned in 1979. Despite this ban, DBCP continues to contaminate groundwater due to its persistence and mobility. This study evaluates the distribution, historical trends, and projected persistence of DBCP in California using data from over 13,000 public supply wells and additional domestic, irrigation, and observation wells (1980-2022). Since 2010, DBCP has been detected in 9% of public supply wells statewide, with higher frequencies in the San Joaquin Valley (21%) and upper Santa Ana River watershed (13%), where DBCP use was most prevalent. Approximately 70% of wells had decreasing concentration trends, whereas increases were more common in deeper wells, indicating downward vertical migration of the DBCP front. Groundwater age estimates show that recharge timing aligns with the 1960s–1970s loading period, enabling reconstruction of peak inputs and providing a basis for age based modeling. To estimate future persistence, we applied a one dimensional advection–dispersion model that simulates long term declines in peak concentrations based on groundwater age, historical loading, and a 38 year degradation half life. Model projections suggest that concentrations above the maximum contaminant level may persist in a declining number of wells until approximately 2080 (range: 2048–2109), with longer persistence in the San Joaquin Valley. The simplified modeling framework, based on age distributions typical of wells capturing peak concentrations, can provide practical regional scale assessment of non-point source contaminants where long-term monitoring exists. This study highlights how the legacy of DBCP contamination will likely affect California's groundwater resources throughout the 21st century.

California

Non-destructive sampling of larval amphibians shows tail tissues reflect whole-body methylmercury concentrations and trophic-related differences in bioaccumulation

Mercury (Hg), and specifically methylmercury (MeHg), is a contaminant of global concern to humans and wildlife, but there is still limited understanding of its effects on many taxa. Amphibians are closely associated with water, where Hg is converted to MeHg, and high concentrations of MeHg can reduce survival of amphibians in the wild. However, limited non-lethal proxies exist for estimating MeHg bioaccumulation in amphibian larvae, which could be used to reduce destructive sampling and allow sampling of imperiled species. We evaluated whether tail clips were indicative of whole-body MeHg concentrations of larval amphibians, whether dragonflies were an effective bioindicator of Hg concentrations of larval amphibians, and compared MeHg bioaccumulation in predatory caudate (salamanders, newts) and non-predatory anuran (frogs, toads) larvae. Tail-clip and whole-body MeHg concentrations were strongly correlated, especially for caudates. There was high variability among sites and species, but caudates had higher MeHg than anurans, and MeHg concentrations of caudates and anurans were strongly correlated. Dragonflies were a weak indicator of MeHg for anurans but strong indicators for larval caudates, likely because caudates and dragonflies are carnivorous and occupy similar trophic positions. Our study revealed that sampling tails can be an effective non-destructive index of whole-body MeHg for larval amphibians and demonstrates differences in MeHg bioaccumulation related to trophic position in larval amphibians and dragonflies. All post-embryo life stages for a broad suite of amphibian species can now be sampled non-lethally for MeHg, allowing for a broader examination of population-level effects and focus on imperiled species that cannot be sampled destructively.

conterminous United States

From hydrated silica to quartz: Potential hydrothermal precipitates found in Jezero crater, Mars

On Earth, silica-rich phases from opal to quartz are important indicators and tracers of geological processes. Hydrated silica, such as opal, is a particularly good matrix for the preservation of molecular and macroscopic biosignatures. Cherts, a type of silica-dominated rocks, provide a unique archive of ancient terrestrial life while quartz is the emblematic mineral of the Earth's continental crust. On Mars, hydrated silica has been detected in several locations based on remote sensing and rover-based studies. In the present article we report on the detection of cobbles made of hydrated silica (opal or chalcedony), as well as well-crystallized quartz. These detections were made with the SuperCam instrument onboard Perseverance (Mars 2020 mission), using a combination of LIBS, infrared and Raman spectroscopy. Quartz-dominated stones are detected unambiguously for the first time on the Martian surface, and based on grain size and crystallinity are proposed to be of hydrothermal origin. Although these rocks were all found as float, we propose that these detections are part of a common hydrothermal system, and represent different depths / temperatures of precipitation. This attests that hydrothermal processes were active in and around Jezero crater, possibly triggered by the Jezero crater-forming impact. These silica-rich rocks, in particular opaline silica, are very promising targets for sampling and return to Earth given their high biosignature preservation potential.

Earth and Planetary Science Letters

Pesticides in surface waters of the Upper Colorado River Basin, Colorado, 1996-98

Forty-four river, stream, and drain sites in the Upper Colorado River Basin in Colorado were sampled during 1996-98 to determine the occurrence and distribution of pesticides in the basin. In a fixed-station study, 57 surface-water samples were collected from October 1996 through January 1998 at four sites. Each site was sampled approximately monthly for up to a year, with more frequent sampling during the spring and summer growing season. In a synoptic study, surface-water samples were collected at 43 sites in the agricultural areas of the Grand Valley and the Uncompahgre River Valley in May 1998. Each site was sampled once. Pesticide concentrations generally were low and varied seasonally and across land uses. Thirty-five pesticides were detected at least once in the two studies, and 11 pesticides accounted for almost 82 percent of the detections. Herbicides were more commonly detected than insecticides, and only the herbicides alachlor and atrazine were detected in more than 50 percent of the samples. Carbofuran was the most commonly detected insecticide and was detected in 19 percent of the samples. Pesticide detections increased and were measured at higher concentrations in the summer months and at the agriculture sites. All pesticide concentrations were less than drinking-water standards, and most complied with human-health advisories and criteria for the protection of freshwater aquatic life. Pesticides in the Upper Colorado River Basin in Colorado were detected slightly less frequently and generally at lower concentrations than in 20 National Water-Quality Assessment Program study-unit basins that collected water-quality data from 1992 through 1996. Results from surface-water sampling conducted during 1996?98 in the Upper Colorado River Basin in Colorado indicate that beneficial uses of water were not being impaired by the presence of pesticides in surface waters in the basin.

Colorado

Characterization of stream water quality and groundwater levels in the Central Pine Barrens region, Suffolk County, New York, 2017–23

The area locally known as the “Central Pine Barrens” region, located in Suffolk County, New York, contains most of Long Island’s preserved and undeveloped land. This region overlays an aquifer system that provides potable groundwater for residents of Suffolk County. Between 2017 and 2023, the U.S. Geological Survey, in cooperation with the Central Pine Barrens Joint Planning & Policy Commission and the Town of Brookhaven, monitored groundwater levels and stream water quality in this region. Groundwater levels were measured monthly at five wells and continuously (15-minute intervals) at a sixth well. Water quality was monitored at five locations in the Carmans River and at two locations in the Peconic River, and samples were analyzed for major ions, trace elements, nutrients, pharmaceuticals, and pesticides. The major ion compositions at the sites were mainly sodium-chloride type waters, and compositions varied the most at the furthest upstream sites in both streams. Concentrations above aquatic-life criteria thresholds also occurred most frequently at the furthest upstream sites. The seasonal patterns of nutrient loads and concentrations varied between the Carmans and Peconic Rivers. Several organic compounds including pharmaceuticals, domestic use products, and pesticides were detected at low concentrations in both streams. Metformin was the most frequently detected pharmaceutical compound, and herbicides were the most frequently detected pesticide class. Water-quality conditions influenced by anthropogenic contributions are a result of current and historical land use, and these contributions include onsite wastewater disposal systems, commercial or domestic fertilizers and pesticides, and urban or industrial contaminants in road runoff. This study characterizes and improves understanding of the current hydrologic conditions in the Central Pine Barrens region and the study findings can help inform the development of plans to manage, protect, and restore water resources.

New York

Estimation of reservoir storage capacity and geomorphic change detection analysis from a multibeam bathymetric survey of Randy Poynter Lake, Rockdale County, Georgia

Rockdale County Department of Water Resources has a directive to update estimates of the reservoir storage capacity of Randy Poynter Lake, located in northern Georgia, and to assess recent sedimentation and associated storage capacity loss. In 2022, the U.S. Geological Survey completed a multibeam bathymetric survey of Randy Poynter Lake to update storage capacity estimates and to quantify storage capacity change since the first multibeam bathymetric survey in 2012 in consideration of estimated errors inherent to bathymetric surveys. Data from the 2022 survey were used to generate contours of the reservoir as well as compute storage capacity at regular increments of water-surface elevation. Storage capacity comparisons between 2012 and 2022 at Randy Poynter Lake show minimal changes that are within the estimated uncertainties, with consistent or slightly increased storage capacities observed at most water-surface elevations and reductions observed at the remaining few elevations. Comparison of the multibeam bathymetric data collected in 2012 with data collected in 2022 further allowed for a formal geomorphic change detection analysis to map, quantify, and infer causation of morphological change over time with respect to a level of detectable change. The volume change in Randy Poynter Lake for the decade between 2012 and 2022 was slightly net-depositional and within the estimated uncertainty. The spatial distribution of sediment deposition was primarily concentrated in the northern portion of the lake, where the principal tributary flows into Randy Poynter Lake. The results of the geomorphic change analysis were used to further understand the future implications to storage capacity change. Despite the challenges of confirming systematic biases because of uncertainties exceeding the observed changes, insights from the study help predict long-term reservoir sediment accumulation, indicating a reservoir half-life extending about 650 years from 2022 on the basis of the current sediment yield estimates.

Georgia

Summary of selenium in the lower Gunnison River Basin, Colorado—Information and data gaps

The Cretaceous Mancos Shale is a geologic source of selenium in the lower Gunnison River Basin. Natural weathering processes and human activity mobilize selenium from the Mancos Shale and derived materials, and surface water, groundwater, and sediment all affect the transport of selenium from source areas to receiving streams and biota. Selenium accumulates through the aquatic food chain, and its toxic effects can result in invertebrate mortality and mortality, decreased reproduction, and deformities to fish and birds. The Bureau of Reclamation, in cooperation with the State of Colorado and Gunnison River Basin water users, is implementing a Selenium Management Program to reduce selenium concentrations in the lower Gunnison River Basin of Colorado. Goals of the Selenium Management Program are to (1) achieve compliance with the State of Colorado chronic aquatic-life standard for dissolved selenium (4.6 micrograms per liter) in the Gunnison River near Grand Junction, Colorado; (2) sufficiently improve water-quality conditions to assist in the recovery of endangered species in the Gunnison and Colorado Rivers by reducing selenium concentrations; and (3) support continued water uses in the basin. Many previous studies have contributed to the understanding of selenium in the environment; however, monitoring and research data gaps exist in the lower Gunnison River Basin. The purpose of this report is to summarize information regarding selenium in the lower Gunnison River Basin and describe strategies for scientific research and monitoring to potentially improve understanding of selenium sources; processes affecting the mobilization, transport, and fate of selenium; and the effects of selenium-mitigation projects in the lower Gunnison River Basin. Monitoring and research data gaps discussed in this report include geologic mapping and geochemical source characterization, long-term and ongoing monitoring of the surface-water and groundwater networks, developing and refining statistical models, characterizing selenium on suspended sediment, modeling selenium in the food web, evaluating best management practices, and more.

Colorado

Assessment of western Oregon debris-flow hazards in burned and unburned environments

In the steep and mountainous environment of western Oregon, debris flows pose a considerable threat to property, infrastructure and life. Wildfire is commonly known to increase the susceptibility of steep slopes to debris flows, but the extent of this process in the western Cascades is not well understood. The US Geological Survey (USGS) currently estimates postfire debris-flow likelihood and triggering rainfall thresholds using a model calibrated to a southern California inventory of debris flows generated by excess runoff within the first year after fire. Because of a lack of available data, this model has not been tested in western Oregon, or in locations where postfire debris flows initiate via other mechanisms (e.g., shallow landslides or in-channel failures). Using repeat field observations and aerial imagery, we developed two new debris-flow inventories within and adjacent to the perimeters of five 2020 wildfires in western Oregon: Archie Creek, Holiday Farm, Beachie Creek, Lionshead and Riverside. The first inventory focuses on postfire debris flows (2020–2022); the second focuses on debris flows prior to fires (1995–2020). Our inventories of prefire and postfire debris flows were used to document initiation mechanisms in Oregon's western Cascades and to evaluate the effects of wildfire. We found that wildfire changed the distribution of debris-flow initiation mechanisms in the western Cascades. After the wildfires, annual rates of runoff-generated debris flows increased by 22% and the number of shallow landslide-initiated debris flows decreased by 17% relative to before the wildfires. Despite this shift, shallow landsliding was the dominant debris-flow initiation mechanism in both unburned and burned environments. We found the performance of the current USGS debris-flow likelihood model was degraded relative to other previously tested locations across the intermountain western United States. Our results highlight the need for improved postfire hazard assessment in western Oregon based on regional model calibration that is tuned to the dominant debris-flow initiation mechanisms.

Oregon

Development of liquefaction-targeted design basis in U.S. seismic provisions

Seismic design criteria for new buildings in the United States have historically focused on life safety performance objectives through minimizing the potential for structural collapse. Development of design criteria to meet this performance objective has evolved over time, leading to the current, risk-targeted maximum considered earthquake (MCE R ) design basis. Corresponding MCE R seismic design loads incorporate the full range of probabilistic ground motion hazard information available from U.S. Geological Survey National Seismic Hazard Models, as well as a representation of the uncertainty in structural collapse capacity. Despite these considerable advances in structural design criteria, guidelines for geotechnical hazards such as liquefaction-induced damage, which continue to be based on uniform ground-shaking hazard (i.e., MCE ground motions), are not well-connected with risk-based, collapse prevention performance objectives. This study, undertaken as part of Building Seismic Safety Council efforts to update recommended seismic provisions through the National Earthquake Hazards Reduction Program, presents probabilistic, liquefaction-targeted design objectives and corresponding ground motion parameters, with a focus on improving consistency in first-level screening criteria for liquefaction hazard assessment. This study identifies a potential maximum acceptable annualized probability of liquefaction triggering ( P L,max ) of 2.5% in 50 years, above which liquefaction consequences and potential mitigation measures would be considered. The P L,max -based design basis is calibrated to effective probabilistic liquefaction hazard levels obtained in practice using current MCE peak ground accelerations, and could be implemented via a new liquefaction-targeted maximum considered earthquake (MCE L ) peak ground acceleration ( PGA L ). The proposed PGA L is derived from probabilistic liquefaction hazard curves and includes uncertainties inherent to liquefaction hazard modeling. The potential design effects of the proposed PGA L are demonstrated via comparison with current MCE PGA levels, effects on first-level liquefaction screening analyses, and improvements in the consistency of P L,max levels across the United States, and for a wide range of site conditions.

conterminous United States

The value of electronic tagging and tracking studies for understanding fish–hypoxia interactions

Objective Hypoxia (i.e., low dissolved oxygen availability) is a natural phenomenon but can also be induced by human activities (e.g., nutrient enrichment from runoff). Given that dissolved oxygen is essential for aquatic life, periods of hypoxia tend to have negative consequences (e.g., sublethal disturbances, mortality) for most fishes. Extensive laboratory research has documented hypoxia thresholds and physiological and behavioral outcomes for a variety of freshwater and marine fishes and there is also an extensive body of fieldwork assessing population-level responses (e.g., survival, distribution). Yet, studying how individual fish respond to hypoxia in the wild has proved challenging; electronic tagging and tracking tools (e.g., biotelemetry, biologging) have made it easier to study individual responses to hypoxia and complement other tools like hydroacoustics that tend to focus on population-level responses. Methods We review what has been learned from contemporary studies that employ electronic tagging and tracking tools to understand how fish respond to hypoxia in the wild. Topics explored include identifying and validating hypoxia thresholds, habitat compression, connectivity, mortality, physiological and bioenergetic consequences, and extreme weather conditions. We also consider what we have learned about evaluating various management plans for hypoxia and reflect on how electronic tags have also been used in aquaculture systems and in hybrid studies that combine laboratory and field research. We highlight fishes in Lake Erie as a research narrative to demonstrate how electronic tagging and tracking have markedly improved our understanding of a longstanding hypoxia issue. Results Our synthesis revealed that electronic tagging and tracking have provided critical information on how fish respond to hypoxia in the field, revealing complex trade-offs and compensatory mechanisms as well as cryptic hypoxia-induced mortality. Beyond just illuminating space use and mortality, tags equipped with various sensors are revealing how fish deal with hypoxia in real time in terms of physiology, bioenergetics, and behavior. Conclusions As electronic tagging and tracking methods experience further innovation and are increasingly applied to understand the effects of hypoxia on fish, we expect more unanticipated findings about the effects of hypoxia on fish in all aquatic ecosystems, which will strengthen our ability to manage and mitigate hypoxia. Combining tools and approaches (e.g., lab and field) is perhaps the best way to generate comprehensive understanding.

Transactions of the American Fisheries Society

The Sedimentary Geochemistry and Paleoenvironments Project Phase 2 data release: An open data resource for the study of Earth's environmental history

Geochemical data from sedimentary rocks are the primary source of information regarding Earth's surface evolution through time, including its air and water envelopes and interactions with life and deep Earth processes. The Sedimentary Geochemistry and Paleoenvironments Project (SGP) is a scientific consortium centered around open data and community-driven development of cyberinfrastructure tools and resources for sedimentary geochemistry and Earth history. Here we describe the SGP Phase 2 data release, which focused on incorporating Paleoproterozoic and Mesoproterozoic (2500–1000 million years ago) data and better accommodating carbonate data. This data release was built through the involvement of >200 researchers worldwide in academia, government, and industry, and provides the largest available public data resource for our user community in the academic fields of geochemistry, sedimentology, tectonics, paleontology, Earth history, and paleoclimate, as well as the petroleum and minerals industries. The dataset now encompasses 126,006 samples and 4,132,371 geochemical analyses. In addition to direct entry by SGP Team Members, we have ingested and incorporated datasets from the Geoscience Australia OZCHEM database, the Alberta Geological Survey, and the Deep-Time Marine Sedimentary Element Database (DM-SED) compilation. This paper details sampling in the Phase 2 dataset with respect to age, geography, lithology, and other geological characteristics, documents access via our search website and API, discusses possible issues and/or biases in the dataset that could impact analyses, describes plans for governance and stewardship of data from Indigenous lands, and serves as the citable reference paper for the data release.

Chemical Geology

Peak streamflow trends in Montana and northern Wyoming and their relation to changes in climate, water years 1921–2020

Frequency analysis on annual peak streamflow (hereinafter, peak flow) is essential to water-resources management applications, including critical structure design (for example, bridges and culverts) and floodplain mapping. Nonstationarity is a statistical property of a peak-flow series such that the distributional properties (the mean, variance, or skew) change either gradually (monotonic trend) or abruptly (shift, step change or change point) through time. Not incorporating or accounting for observed nonstationarity into peak-flow frequency analysis might result in a poor representation of the true probability of large floods and thus misrepresent the actual flood risks to life and property. This report summarizes how hydroclimatic variability might affect the temporal and spatial distributions of peak-flow data in the State of Montana (and northern Wyoming) and is part of a larger study to document peak-flow nonstationarity and hydroclimatic changes across a nine-State region consisting of Illinois, Iowa, Michigan, Minnesota, Missouri, Montana, North Dakota, South Dakota, and Wisconsin. A wide range of analyses and statistical approaches are applied to document the primary mechanisms controlling floods and characterize temporal changes in hydroclimatic variables and peak flows. This study was completed in cooperation with the Montana Department of Natural Resources and Conservation. The purpose of this report is to characterize temporal and spatial patterns of nonstationarity in peak flows and hydroclimatology in Montana and northern Wyoming. In this evaluation, peak-flow, daily streamflow, and model-simulated gridded climatic data were examined for monotonic trends, change points, and other statistical properties that might indicate changing climatic and environmental conditions. This report includes background information on the study area, the history of U.S. Geological Survey peak-flow data collection and frequency analysis in Montana, and the review of research relating to hydroclimatic variability and change in Montana. This study might help provide a framework for addressing potential nonstationarity issues in peak-flow frequency updates that commonly are completed by the U.S. Geological Survey in cooperation with other agencies throughout the Nation. The analytical structure of this study includes analyses of monotonic trends and change points in numerous hydroclimatic variables in assigned 30-, 50-, 75-, and 100-year analysis periods. For Montana and part of Wyoming, the 30-, 50-, 75, and 100-year analyses included 157, 70, 48, and 12 streamgages, respectively. For those streamgages, nonstationarities were analyzed in the following variables: (1) climatic variables, including annual and seasonal (winter, spring, summer, and fall) temperature and precipitation; (2) daily streamflow variables, including the annual center of volume duration, annual center of volume median, and peaks over threshold with a mean of four events per year; and (3) annual peak-flow variables, including peak-flow timing and magnitude. A likelihood approach was used to express statistical confidence and assign the nonstationarity results as likely upward or downward (highest statistical confidence), somewhat likely upward or downward (less statistical confidence), or about as likely as not (little statistical confidence; hereinafter, neutral). For the nonstationarity analyses of the climatic, daily streamflow, and peak-flow variables, the results are presented in detail and discussed with respect to statewide patterns and geographic variability. For each of the 30-, 50-, and 75-year analyses, peak-flow change-point and monotonic trend analyses were compiled for streamgages classified with likely downward or likely upward trends. For those streamgages, the associated basin characteristics and nonstationarity results for peak-flow timing, daily streamflow, and climatic variables were investigated and statistically compared to discern associations among other variables that might contribute to the peak-flow nonstationarity results. The 50- and 75-year peak-flow nonstationarities identified in this study are mostly downward, in association with mostly upward temperature and potential evapotranspiration:precipitation monotonic trends. For the 50-, 75-, and 100-year analyses, the peak-flow change points are predominantly downward and are concentrated in the 1970s and 1980s, which indicates general consistency among the longer trend periods. These findings are in association with substantial research documenting globally rising temperature and atmospheric greenhouse gas concentrations that might be largely attributed to anthropogenic activities. Anthropogenic effects might represent long-term (on the order of several decades to more than a century) climate changes that might happen within highly variable natural climate fluctuations. Several paleo studies in the north-central United States have indicated that hydroclimatic extremes (that is, low- and high-streamflow conditions) before European settlement have been outside of extremes since the 1900s. Depending on the interactions of anthropogenic effects and natural climate variability, extreme high-streamflow conditions might occur in the future, even in the presence of long-term downward peak-flow trends.

Montana, Wyoming

Estimated average annualized tsunami losses for the United States

Tsunami hazards are substantial threats to coastal communities across the United States (U.S.) and its territories. U.S. states and territories collaborate through the National Tsunami Hazard Mitigation Program (NTHMP) to develop their own tsunami-hazard information for outreach and evacuation planning. An effort to curate this tsunami-hazard information to support comprehensive risk analysis at the national level has not yet been completed. In support of this effort, the Federal Emergency Management Agency (FEMA) collaborated with the NTHMP, the National Oceanic and Atmospheric Administration (NOAA) and the U.S. Geological Survey (USGS) starting in 2023. This collaboration included the collection and analysis of existing tsunami hazard data and methods in the U.S. Tsunami subject matter experts identified and selected scientifically defensible methods for estimating the risks to buildings and populations in coastal communities. These efforts may support decision making regarding resilience policies, priorities, strategies and funding levels. Tsunamis can be triggered by earthquakes, subaerial or submarine landslides, volcanic eruptions, glacial calving, near-earth objects, weather or other events. These events can cause severe destruction, injuries, and loss of life due to powerful currents and flooding. Tsunamis pose a substantial threat to the western United States and all U.S. territories, as described below. ■ Hawaii is threatened by distant tsunamis due to its central location in the Pacific Ocean basin and has a history of local events. ■ Alaska, particularly the Aleutian Islands, faces local tsunami threats due to proximity to the Alaska-Aleutian Subduction Zone, as well as distant tsunamis from around the Pacific Ocean basin. ■ The western coast of the U.S. is threatened by distant tsunamis from around the Pacific Ocean basin and local source tsunamis from earthquakes generated within the Cascadia Subduction Zone in the Pacific Northwest. ■ American Samoa faces local tsunami threats from earthquakes generated in the nearby Tonga Trench, as well as distant tsunami threats. ■ Guam and the Commonwealth of the Northern Mariana Islands are threatened by local tsunamis from the nearby Mariana Subduction Zone, as well as distant sources from around the Pacific Ocean Basin. ■ Puerto Rico and the United States Virgin Islands are threatened by multiple local and distant tsunami sources, such as the Puerto Rico Trench (PRT), given their location in the complex seismic region of the Caribbean Sea. Several historical events stand out because of their catastrophic impacts. ■ In the Pacific Northwest, the 1700 Cascadia earthquake caused a tsunami that affected coastal Native American communities, though the extent of the damage is not fully documented (Ludwin, et al., 2005). ■ In Puerto Rico, the 1918 earthquake triggered a tsunami that caused $77 million in damage in 2022 dollars and 116 fatalities, primarily along the western coast (Coffman et al., 1982). ■ The 1946 Aleutian Islands earthquake triggered a massive tsunami that devastated Hilo, Hawaii, killing 158 people and resulting in approximately $375 million in damage (adjusted to 2022 dollars) (Fisher et al., 2023). ■ The 1964 Alaska earthquake (M 9.2) generated tsunamis that caused severe destruction in some communities across Alaska, Oregon, and California. This disaster led to a total of 124 fatalities and approximately $2.9 billion in property damage (adjusted to 2022 dollars) (Brocher et al., 2014) (Alaska Science Center, 2024). ■ In American Samoa, a tsunami generated by the 2009 Samoa earthquake (Mw 8.1) caused widespread devastation, resulting in 34 confirmed fatalities (Apatu et al., 2013) and economic losses exceeding $160 million (adjusted to 2022 dollars) (DHS, 2011). More recent events, including the 2010 Chile earthquake, the 2011 Japan earthquake, and the 2022 Tonga volcanic eruption, resulted in millions of dollars in damage to numerous ports and harbors in the U.S. South Pacific territories, Hawaii, and along the west coast of the U.S. (Lynett, et al., 2022) (Wilson, et al., 2013). Since these events, the expansion of the built environment in lowlying areas along the coast has increased the exposure of buildings and people, thereby further escalating community risk from tsunamis. This report provides a comprehensive national assessment of earthquake-generated tsunami risk. It does not include impacts from tsunamis generated by landslides, volcanic eruptions, glacial calving, near-earth objects, weather, or other events. This study is based on the best available hazard data from the U.S. Pacific Coast (California, Oregon and Washington), Alaska, Hawaii, U.S. Pacific Territories (American Samoa, Guam and Commonwealth of the Northern Mariana Islands) and Caribbean Territories (Puerto Rico and United States Virgin Islands). Tsunami risks associated with states along the East Coast, Gulf Coast, and Great Lakes are not included in this study because Hazus 6.1 software (FEMA 2024a) does not currently include the ability to analyze tsunami risk in those states. Once modeling capabilities and tsunami hazard data become available for additional states, FEMA may incorporate these data into future editions of this study.

Alaska, California, Hawaii Oregon, Washington

Assessment of channel morphology, hydraulics, and bedload transport along the Siletz River, western Oregon

Significant Findings Chinook salmon ( Oncorhynchus tshawytscha ) and Pacific lamprey ( Entosphenus tridentatus ) are native, anadromous fish species in the Siletz River Basin, western Oregon, that face many threats to their survival in freshwater and the ocean. The Confederated Tribes of Siletz Indians of Oregon seek to mitigate freshwater threats to Chinook salmon and Pacific lamprey, where possible, with habitat conservation and restoration efforts. This study was conducted to assist the Confederated Tribes of Siletz Indians of Oregon in documenting and understanding the hydrogeomorphic processes shaping present-day habitat conditions and assessing future habitat implications for Chinook salmon and Pacific lamprey along the main-stem Siletz River. As such, this study focused on understanding geomorphic processes and patterns of channel change, including lateral and vertical adjustments in channel position and changes in bed-material sediment (sands, gravels, and cobbles that mantle the channel bed), which collectively determine overall patterns of channel morphology and fluvial habitats. Objective One was to evaluate lateral changes in channel position, vertical changes in bed elevation, and longitudinal patterns in bed-material particle size along the Siletz River using detailed channel maps developed from aerial photographs collected from 1939 to 2016, long-term records of stage and discharge collected by the U.S. Geological Survey (USGS) near the City of Siletz, and sediment particle size data. Objective Two was to assess hydraulic conditions using one- and two-dimensional hydraulic models and transport capacity of bed-material sediment using bedload transport models and sediment particle size data for a range of discharge conditions. Objective Three was to identify potential burrowing habitat for lamprey larvae (PBH) along the Siletz River network and provide insights in local factors influencing PBH along the main-stem Siletz River. The overall findings are synthesized to describe habitat implications for Chinook salmon and Pacific lamprey under present-day and future conditions. Results of Objective One, an evaluation of changes in channel position and bed elevations and longitudinal patterns in bed-material particle size along the Siletz River, include the following From 1939 to 2016, channel planform and the mapped area of gravel bars did not change considerably along the 97.2-kilometers (km) of Siletz River between Elk Creek and Millport Slough, except for in short sections generally less than 1 km long. This inherent lateral channel stability results from the resistant bedrock and terraces that bound most of the channel and limit lateral changes in channel position. Intermittent sections along the study reach where the active channel widened at channel bends displayed noticeable planform changes and increases in mapped bar area. From water year (WY; a 12-month period from October 1 through September 30 and named for the year in which it ends) 1906 to 2021, changes in the stage-discharge relation interpreted as rising and lowering channel bed levels were observed at the USGS streamgage 14305500 (Siletz River at Siletz, OR) in response to floods (such as high flows in February 1996 and January 2002 that exceeded 0.1 and 0.667 annual exceedance probabilities [AEP] events, respectively). However, the rating curve representing the stage-discharge relation did not change in response to high-magnitude floods between 2007 and 2021. Along the approximately 54-km of the Siletz River between Moonshine Park and the Bulls Bag area, surficial particle distributions varied considerably between sampling sites in response to changes in channel width and gradient, sediment inputs from tributaries, and basin geology. Despite this variability, median particle sizes tended to decrease in size in the downstream direction over the 54 km. Results of Objective Two, an evaluation of hydraulic and bedload transport conditions along the Siletz River, include the following The most substantial increases in maximum and mean water velocity and bedload sediment transport capacity occurred at events between the 0.995 and 0.50 AEPs. Events of these magnitudes occur approximately every 1–2 years. Smaller events (0.995 AEP) are generally contained by the banks of the main channel, whereas larger events (0.50 AEP) generally spill over the banks and inundate high-elevation bar and low-elevation floodplain surfaces. Multiple smaller floods within a WY that exceed the 0.995 and 0.50 AEPs (such as in WY 1996) can transport as much or more bed-material sediment than a single, higher magnitude event (such as the maximum event recorded in WY 2000 with an estimated AEP of around 0.002). Bedload transport capacity generally exceeds sediment supply (greater than 2 millimeters [mm]) for most of the study area from Wildcat Creek to the City of Siletz as evidenced by substantial in-channel bedrock. Despite overall conditions of limited sediment supply, transport capacity still varies considerably within and between years with discharge magnitude and spatially in relation to local hydraulics imposed by bedrock, channel morphology, and human infrastructure (such as bridges). Results of Objective Three, an analysis of PBH for lamprey larvae, include the following About 28 percent of the Siletz River network meets the mean annual suspended sediment loads and channel slope criteria for PBH. Along the main-stem Siletz River, in-channel bedrock outcrops and high transport capacity are expected to further constrain PBH. Together, these results suggest that most of the Siletz River between Wildcat Creek and the City of Siletz has had only modest vertical and lateral change between the 1930s and 2010s because of the bedrock in and along the main channel and the river’s relatively high transport capacity relative to bed-material sediment supply. However, localized sections of the Siletz River where the active channel widens, particularly at channel bends, exhibited some change in channel planform and the locations and area of gravel bars. In the future, moderate increases in autumn-winter discharge may not result in substantial changes in coarse gravel bars along the Siletz River but may result in selective transport of finer bed-material sediment (gravel, sands, and silts) that provide spawning habitats for Chinook salmon and Pacific lamprey and burrowing habitats for lamprey larvae. Assuming no substantial changes in bed-material sediment supply, increased bedload transport capacity may cause frequent entrainment of lamprey larvae that are burrowed in coarse sand deposits, suspension and downstream transport of salmon eggs incubating in gravels, and reductions in the areas of spawning gravels for Chinook salmon and Pacific lamprey. Exact implications of current and future discharge conditions for these species along the Siletz River depends on many factors, including sediment supply, local hydraulics, and the timing of flood events relative to fish life stages.

Oregon