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At least 55 records · Page 3Linked to original sources
USGS2021

Got acetylene: A personal research retrospective

In research, sometimes sheer happenstance and serendipity make for an unexpected discovery. Once revealed and if interesting enough, such a finding and its follow-up investigations can lead to advances by others that leave its originators ‘scooped’ and mulling about what next to do with their unpublished data, specifically what journals could it still be published in and be perceived as original. This is what occurred with us nearly 40 years ago with regard to our follow-up observations of acetylene fermentation and led us to concoct a ‘cock-and-bull’ story. We hypothesized about a plausible role for acetylene metabolism in the primordial biogeochemistry of Earth and the possibility of acetylene serving as a key life-sustaining substrate for alien microbes dwelling in the orbs of the outer solar system. With the passage of time, advances were made in whole-genome sequencing coupled with major in silico progress in bioinformatics. In parallel came the results of explorations of the outer solar system (i.e. the Cassini mission to Saturn and its moons). It now appears that these somewhat harebrained ideas of ours, arisen at first out of a sense of desperation, actually ring true in fact, and particularly well in song: ‘Tell a tale of cock and bull , Of convincing detail full Tale tremendous, Heav'n defend us! What a tale of cock and bull!' From ‘The Yeoman of the Guard’ by Gilbert & Sullivan .

FEMS Microbes↗
USGS2014

A lack of crowding? Body size does not decrease with density for two behavior-manipulating parasites

For trophically transmitted parasites that manipulate the phenotype of their hosts, whether the parasites do or do not experience resource competition depends on such factors as the size of the parasites relative to their hosts, the intensity of infection, the extent to which parasites share the cost of defending against the host’s immune system or manipulating their host, and the extent to which parasites share transmission goals. Despite theoretical expectations for situations in which either no, or positive, or negative density-dependence should be observed, most studies document only negative density-dependence for trophically transmitted parasites. However, this trend may be an artifact of most studies having focused on systems in which parasites are large relative to their hosts. Yet, systems are common where parasites are small relative to their hosts, and these trophically transmitted parasites may be less likely to experience resource limitation. We looked for signs of density-dependence in Euhaplorchis californiensis (EUHA) and Renicola buchanani (RENB), two manipulative trematode parasites infecting wild-caught California killifish (Fundulus parvipinnis). These parasites are small relative to killifish (suggesting resources are not limiting), and are associated with changes in killifish behavior that are dependent on parasite-intensity and that increase predation rates by the parasites’ shared final host (indicating the possibility for cost sharing). We did not observe negative density-dependence in either species, indicating that resources are not limiting. In fact, observed patterns indicate possible mild positive density-dependence for EUHA. Although experimental confirmation is required, our findings suggest that some behavior-manipulating parasites suffer no reduction in size, and may even benefit when "crowded" by conspecifics.

Integrative and Comparative Biology↗
USGS2021

Evidence of economical territory selection in a cooperative carnivore

As an outcome of natural selection, animals are probably adapted to select territories economically by maximizing benefits and minimizing costs of territory ownership. Theory and empirical precedent indicate that a primary benefit of many territories is exclusive access to food resources, and primary costs of defending and using space are associated with competition, travel and mortality risk. A recently developed mechanistic model for economical territory selection provided numerous empirically testable predictions. We tested these predictions using location data from grey wolves ( Canis lupus ) in Montana, USA. As predicted, territories were smaller in areas with greater densities of prey, competitors and low-use roads, and for groups of greater size. Territory size increased before decreasing curvilinearly with greater terrain ruggedness and harvest mortalities. Our study provides evidence for the economical selection of territories as a causal mechanism underlying ecological patterns observed in a cooperative carnivore. Results demonstrate how a wide range of environmental and social conditions will influence economical behaviour and resulting space use. We expect similar responses would be observed in numerous territorial species. A mechanistic approach enables understanding how and why animals select particular territories. This knowledge can be used to enhance conservation efforts and more successfully predict effects of conservation actions.

Montana↗
USGS2022

Economical defence of resources structures territorial space use in a cooperative carnivore

Ecologists have long sought to understand space use and mechanisms underlying patterns observed in nature. We developed an optimality landscape and mechanistic territory model to understand mechanisms driving space use and compared model predictions to empirical reality. We demonstrate our approach using grey wolves ( Canis lupus ). In the model, simulated animals selected territories to economically acquire resources by selecting patches with greatest value, accounting for benefits, costs and trade-offs of defending and using space on the optimality landscape. Our approach successfully predicted and explained first- and second-order space use of wolves, including the population's distribution, territories of individual packs, and influences of prey density, competitor density, human-caused mortality risk and seasonality. It accomplished this using simple behavioural rules and limited data to inform the optimality landscape. Results contribute evidence that economical territory selection is a mechanistic bridge between space use and animal distribution on the landscape. This approach and resulting gains in knowledge enable predicting effects of a wide range of environmental conditions, contributing to both basic ecological understanding of natural systems and conservation. We expect this approach will demonstrate applicability across diverse habitats and species, and that its foundation can help continue to advance understanding of spatial behaviour.

Montana↗
USGS2025

Causal interpretations can be based on mechanistic knowledge

There exists a long-standing disconnect between statistical and mechanistic approaches to the development of causal understanding. Statistical approaches, which have dominated the literature, have focused on the need to obtain perfectly unbiased estimates of causal effects often using either experimental, quasi-experimental or other methods. Mechanistic approaches have instead focused on investigating how systems work by elucidating the structures and processes whereby variations in one system property can propagate to other system properties. Explicit references to ‘causal effects’ have tended to require adherence to statistical methods and standards, inadvertently downplaying the suitability of mechanistic knowledge for that purpose. It has been recently demonstrated that both mechanistic and statistical approaches can contribute to the long-term goal of developing causal knowledge and understanding. Proponents of statistical causal inference have seldom recommended that mechanistic evidence be relied upon to support causal interpretations. This paper provides a clear and thorough example where a causal interpretation can be supported based on mechanistic knowledge. Arguing for a causal interpretation based on knowledge of mechanisms has typically been an informal process and one that has thus far infrequently led to explicit declarations of causal knowledge by scientists. To overcome this problem, we illustrate a recently described procedure referred to as ‘causal knowledge analysis’ to summarize explicit support for causal interpretations. In this paper, we first clarify the basis of the long-standing disagreement by describing the crux of the problem as viewed from a statistical perspective and by describing how it can be overcome when there is sufficient mechanistic knowledge. We then offer a proof-of-concept example based on robust documentation and description of the mechanisms whereby plants causally regulate the responses of coastal marsh elevation to changes in sea level. Synthesis —The evidential requirements for declaring a relationship to be causal have been obscured until very recently, leading to a long neglect of this issue by scientists. Meanwhile, subject matter experts have accumulated a vast body of undeclared causal knowledge that we now need to recognize in order to position scientists as essential players in defending causal interpretations.

Journal of Ecology↗
USGS2020

The use of Bayesian priors in Ecology: The good, the bad and the not great

Bayesian data analysis (BDA) is a powerful tool for making inference from ecological data, but its full potential has yet to be realized. Despite a generally positive trajectory in research surrounding model development and assessment, far too little attention has been given to prior specification. Default priors, a sub‐class of non‐informative prior distributions that are often chosen without critical thought or evaluation, are commonly used in practice. We believe the fear of being too ‘subjective’ has prevented many researchers from using any prior information in their analyses despite the fact that defending prior choice (informative or not) promotes good statistical practice. In this commentary, we provide an overview of how BDA is currently being used in a random sample of articles, discuss implications for inference if current bad practices continue, and highlight sub‐fields where knowledge about the system has improved inference and promoted good statistical practices through the careful and justified use of informative priors. We hope to inspire a renewed discussion about the use of Bayesian priors in Ecology with particular attention paid to specification and justification. We also emphasize that all priors are the result of a subjective choice, and should be discussed in that way.

Methods in Ecology and Evolution↗
USGS2019

Juvenile Sandhill Cranes exhibit wider ranging and more exploratory movements than adults during the breeding season

Sandhill Cranes Antigone canadensis exhibit delayed sexual maturity and breeding, and therefore juvenile Cranes searching for suitable territories to occupy have different ecological constraints on movements than adults, which must defend a territory and raise young. We used fine-scale GPS telemetry data to characterize and compare movements of adult and juvenile Cranes near the boundary between two populations in Minnesota, USA, from arrival on natal areas in the spring until staging prior to autumn migration. Juvenile and adult Cranes had marked differences in movement patterns throughout the breeding season. Juveniles were more likely than adults to display long-distance movements: they revisited areas less frequently throughout the breeding season and they had lower average residence times.

Minnesota↗
USGS2024

Microbial diversity, genomics, and phage–host interactions of cyanobacterial harmful algal blooms

The occurrence of cyanobacterial harmful algal blooms (cyanoHABs) is related to their physical and chemical environment. However, less is known about their associated microbial interactions and processes. In this study, cyanoHABs were analyzed as a microbial ecosystem, using 1 year of 16S rRNA sequencing and 70 metagenomes collected during the bloom season from Lake Okeechobee (Florida, USA). Biogeographical patterns observed in microbial community composition and function reflected ecological zones distinct in their physical and chemical parameters that resulted in bloom “hotspots” near major lake inflows. Changes in relative abundances of taxa within multiple phyla followed increasing bloom severity. Functional pathways that correlated with increasing bloom severity encoded organic nitrogen and phosphorus utilization, storage of nutrients, exchange of genetic material, phage defense, and protection against oxidative stress, suggesting that microbial interactions may promote cyanoHAB resilience. Cyanobacterial communities were highly diverse, with picocyanobacteria ubiquitous and oftentimes most abundant, especially in the absence of blooms. The identification of novel bloom-forming cyanobacteria and genomic comparisons indicated a functionally diverse cyanobacterial community with differences in its capability to store nitrogen using cyanophycin and to defend against phage using CRISPR and restriction-modification systems. Considering blooms in the context of a microbial ecosystem and their interactions in nature, physiologies and interactions supporting the proliferation and stability of cyanoHABs are proposed, including a role for phage infection of picocyanobacteria. This study displayed the power of “-omics” to reveal important biological processes that could support the effective management and prediction of cyanoHABs.

Florida↗
USGS2023

Territories within groups: The dynamic competition of drift-feeding juvenile Chinook salmon in 3-dimensional space

Salmonid populations are often regulated by territorial competition among juveniles for food and space. In the canonical view, salmonid territories are spaced horizontally across the river bottom in a 2-D mosaic. However, some juveniles instead feed in tight, three-dimensional (3-D) social groups. To investigate whether territoriality is possible within such groups, we applied a new concept—the momentary home range—to quantify the size, exclusivity, and temporal dynamics of 3-D space use by juvenile Chinook Salmon ( Oncorhynchus tshawytscha ) in the Chena River, Alaska. Individual strategies spanned a broad continuum of exclusivity and stationarity. However, some of the largest, most dominant fish in each group aggressively defended stationary, exclusive feeding spaces and thus were unambiguously territorial. Transient floaters entered and left the group quickly. A majority of fish were not aggressive but nevertheless occupied exclusive, stationary spaces that probably function as territories with regard to resource distribution and population regulation. The presence of territoriality within social groups, in a 3-D configuration, expands the known domain of this important behavior.

Alaska↗
USGS2022

Spring mudflows at Wrightwood, Southern California

The Wrightwood area in the San Gabriel Mountains of southern California is known as a site of recurring mudflow activity. The community of Wrightwood is built on the coalesced fans of Sheep, Acorn and Heath Creeks, and the fan deposits are probably chiefly of mudflow origin. Historically, mudflows there have been observed in association with three climatic conditions: (1) short period of high-intensity rainfall during the summer dry season (thunderstorms); (2) periods of heavy rainfall during the October-March winter season, when most of the year's rain and snow fall; and (3) thaw of the winter snow pack. The mudflow activity associated with heavy rainfall has generally been of only a few hours or at most a few days duration. Mudflow activity associated with spring thaw has been of longer duration, as much as several weeks. At various times in the past, mudflows generated by all three conditions have inundated homes and highways in the Wrightwood area, which is now defended by a flood control levee system. During May and June, 1969 the rapid melting of a heavy snow pack resulted in a 40-day period of mudflow activity in Heath Creek. All flows originated in the steep upper reaches of Heath Creek, where steep ravines are incised in the toe of a large active landslide. Direct observation by the authors showed that flows formed when small masses of debris fell or slid from the surface of the landslide mass into the steep channel. Some of the masses were fluid enough to continue downstream without interruption; others stopped in the channel until remobilized by added melt water or the passage of a mudflow from a higher altitude. Both processes resulted in discrete ‘slugs’ which continued down the steep ravine, through an allu-viated canyon, to a fan where most of the debris was deposited. The activity may be described as a spring mudflow cycle, within which three stages were observed in a gradational sequence. A waxing stage began with sporadic short-duration mudflows, during which the lower alluviated canyon floor of Heath Creek was aggraded. A climactic stage of larger mudflows at more frequent intervals and of longer duration was characterized by the incision of a single, narrow, U-shaped channel in the alluviated canyon floor, and transportation of debris as much as 2 miles (3.2 km) from the source. A waning stage followed as meltwater supply decreased; short-duration flows backfilled the U-shaped channel and spilled over the banks, again aggrading the alluviated canyon floor.

California↗
USGS2003

Sex differences in the thermoregulation and evaporative water loss of a heterothermic bat, Lasiurus cinereus, during its spring migration

This study quantifies sex differences in thermoregulation and water loss of a small (20-35 g) insectivorous heterothermic mammal, the hoary bat Lasiurus cinereus , during its spring migration. We measured body temperature, metabolic rate and evaporative water loss, and calculated wet thermal conductance, for bats exposed to air temperatures ranging from 0 to 40°C for periods of 2-5 h. Pregnant females maintained normothermic body temperatures (35.7±0.7°C; mean ± s.e.m. ) independent of air temperature. In contrast, males became torpid during the majority (68%) of exposures to air temperatures <25°C. The thermal neutral zone (TNZ) ranged between approximately 30°C and 34°C in both sexes and, within the TNZ, females had lower mass-specific metabolic rates (6.1±0.2 mW g -1 ) than males (9.0±0.9 mW g -1 ). Wet thermal conductance values in torpid bats (0.7±0.5 mW g -1 deg. -1 ) were lower than those of normothermic individuals (1.1±0.3 mW g -1 deg. -1 ). Mass-specific rates of evaporative water loss in males were consistently higher than in females at most air temperatures and rates of water loss in torpid bats were 63±6% of normothermic values. These results suggest that male and pregnant female L. cinereus employ different thermoregulatory strategies during their spring migration. Females defend normothermic body temperatures, presumably to expedite embryonic growth, while males use torpor, presumably to minimize energy and water deficits. These variable thermoregulatory strategies may reflect continental differences in the summer distribution of the sexes.

Journal of Experimental Biology↗
USGS2007

Willow Flycatcher nonbreeding territory defense behavior in Costa Rica

We studied the intraspecific territorial defense behavior of wintering Willow Flycatchers (Empidonax traillii) in Costa Rica using a randomized playback experiment that exposed male and female birds to recordings of Willow Flycatcher songs and calls, Lesser Ground Cuckoo (Morococcyx erythropygius) vocalizations, and random noise. Flycatchers of both sexes responded most strongly to simulated conspecific territory intrusion, and the agonistic behaviors that we observed were similar to those seen during natural intraspecific encounters in winter. Both males and females engaged in song and aggressive behaviors in defense of territories, and there was no significant difference between the sexes in scored agonistic responses. The similarity between the sexes in intraspecific territorial defense behaviors and aggressiveness may account for both sexes of flycatchers using the same habitats at our study sites in Costa Rica, and wintering females defending territories against males. The Willow Flycatcher, a sexually monomorphic species, differs in this way from a number of sexually dimorphic passerines, in which behaviorally dominant males occur in more optimal winter habitats. ?? The Cooper Ornithological Society 2007.

The Condor↗
USGS2004

Sunrise nest attendance and aggression by least Bell's vireos fail to deter cowbird parasitism

We video-recorded three, natural, brood-parasitism events by Brown-headed Cowbirds ( Molothrus ater ) at nests of Least Bell's Vireos ( Vireo bellii pusillus ). All instances occurred near dawn, during both egg-laying and incubation stages of the nesting cycle. In each case, an adult vireo was on the nest when the female cowbird arrived. Both members of each parasitized pair vigorously attacked the intruding cowbird, but in no encounter did a pair of vireos successfully defend its nest from parasitism. Thus, Least Bell's Vireos in our study were unable to prevent a female cowbird from parasitizing their nests once the cowbird had reached the nest.

The Wilson Bulletin↗
USGS2024

Reply to “comment on ‘an evaluation of the timing accuracy of global and regional seismic stations and networks’ by Yang et al. (2021)” by Xin Zhang and Lianxing Wen

The finding of Yang et al. (2021 ; hereafter, YSR21) casts fundamental doubts on all the previous studies on the temporal changes of the inner core (IC) surface that are based on absolute arrival times, including Wen (2006 ; hereafter, WEN06) and its follow‐up studies. The reports of small time shifts of the IC‐reflected phase ( PKiKP ) likely misinterpreted station‐related issues (clock errors and instrument changes) as evidence for rapid localized deformation at the IC surface. The comment by Zhang and Wen (2024 ; hereafter, ZW24) aims at defending the results and conclusions of WEN06 by questioning a tiny portion of the results (2 out of over 400 doublets and 3 out of over 400 problematic stations) in YSR21. In response, we acknowledge an accidental error in table S1 of YSR21, which is corrected in an erratum ( Yang et al. , 2023 ), although this does not affect the results or interpretations of YSR21. However, we strongly disagree with the criticisms in ZW24 due to many problems therein, especially the issue of irreproducibility due to its inconsistent procedures with YSR21. While the problems are related to the use of absolute arrivals in the previous studies by Wen’s group, key problems in this new comment are related to questionable data selection and inconsistent processing. We further caution the metadata updates, particularly when involving small temporal change signals. We focus on the main points in ZW24 and demonstrate that its arguments are problematic in many aspects and do not diminish the credibility of YSR21 or other related works by Yang and Song in support of the IC differential rotation.

Seismological Research Letters↗
USGS2015

Breeding ecology of Wandering Tattlers Tringa incana: a study from south-central Alaska

Montane-nesting shorebirds are arguably the least studied of the Charadriiformes, owing in part to the remoteness of their breeding areas, low nesting densities, and specialized behaviors. We studied a marked population of the Wandering Tattler Tringa incana, during a three-year period (1997&ndash;1999) on nesting grounds in south-central Alaska. Two aspects of our results stand out. First is the previously undescribed preference for tattlers to nest several kilometers removed from pre-nesting feeding areas, mostly in association with both small (kettle) lakes and running water (near small distributaries of major drainages). Second is the apparent use of the study area by cohorts of birds of different breeding status, including (1) local breeders, which defended pre-breeding foraging areas, (2) local non-breeding birds, which remained on the area but were not territorial, and (3) transients that were captured later in the season, but not seen again on the area during the season of capture. We also found that (1) birds tended to nest in clusters despite what appeared to be the ample availability of nesting habitat, (2) they employed an inconspicuous&rsquo; nesting strategy whereby neither member of a pair betrayed its presence on the nesting area, and (3) females departed the area during early chick-rearing, leaving males to tend broods.

Alaska↗
USGS1957

Some limitations on the possible composition of the ore-forming fluid

The activity ratios of various important anions (S (super =) , CO 3 (super =) , SO 4 (super =) , OH (super -) , F (super -) , and Cl (super -) ) in hydrothermal solutions at the time of deposition are evaluated using a simple thermodynamic technique. The ratios are interpreted in the light of the mineralogy of ore deposits and limits are placed on the variability of each ratio in hydrothermal solutions. All of the calculations are made for 25 degrees C and cautious extrapolation to higher temperatures seems justified; however, additional data for elevated temperatures and pressures are needed before more than approximate values may be assigned to these ratios in the ore-forming fluid.The calculated partial pressure of CO 2 in the ore fluid is generally less than one atmosphere, which suggests that a dense CO 2 phase cannot be considered an important ore fluid for most deposits. The partial pressure of H 2 S is usually less than 10 (super -4) atmosphere, which makes it extremely difficult to defend the theory that metals (other than the easily complexible mercury, arsenic, antimony, and perhaps gold and silver) are transported in quantity as complex sulfides or hydrosulfides. The sulfate to sulfide ratio is such that the oxidation potential at the time of deposition is defined by the following equation: Eh (in volts) = 0.22 + or - 0.04 - 0.059 pH.

Economic Geology↗
USGS2004

Density estimation in wildlife surveys

Several authors have recently discussed the problems with using index methods to estimate trends in population size. Some have expressed the view that index methods should virtually never be used. Others have responded by defending index methods and questioning whether better alternatives exist. We suggest that index methods are often a cost-effective component of valid wildlife monitoring but that double-sampling or another procedure that corrects for bias or establishes bounds on bias is essential. The common assertion that index methods require constant detection rates for trend estimation is mathematically incorrect; the requirement is no long-term trend in detection "ratios" (index result/parameter of interest), a requirement that is probably approximately met by many well-designed index surveys. We urge that more attention be given to defining bird density rigorously and in ways useful to managers. Once this is done, 4 sources of bias in density estimates may be distinguished: coverage, closure, surplus birds, and detection rates. Distance, double-observer, and removal methods do not reduce bias due to coverage, closure, or surplus birds. These methods may yield unbiased estimates of the number of birds present at the time of the survey, but only if their required assumptions are met, which we doubt occurs very often in practice. Double-sampling, in contrast, produces unbiased density estimates if the plots are randomly selected and estimates on the intensive surveys are unbiased. More work is needed, however, to determine the feasibility of double-sampling in different populations and habitats. We believe the tension that has developed over appropriate survey methods can best be resolved through increased appreciation of the mathematical aspects of indices, especially the effects of bias, and through studies in which candidate methods are evaluated against known numbers determined through intensive surveys.

Wildlife Society Bulletin↗