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At least 55 records · Page 3Linked to original sources

Shoreline slope influences movements of larval lampreys over dewatered substrate

Larval lampreys are filter feeders that live for several years burrowed in fine sediments in freshwater streams. Stream side channels and edges, where larval lampreys gather, are vulnerable to natural and human-caused dewatering. Water level reductions can strand and kill thousands of larval lampreys, in part because many remain burrowed until their habitats are exposed, at which point larvae must emerge and attempt to move over dewatered substrate to locate wetted habitat. Dewatering for restoration efforts or seasonal closures of irrigation canals can be done slowly to reduce lamprey strandings, but in some settings, mechanisms are lacking to control the dewatering rate. Phased dewatering, where water level is reduced in stages separated by periods of static water level, could provide options when dewatering rate cannot be tightly controlled. To guide this phased approach, information is needed on the movement capability of larval lampreys. We examined larval lamprey ( Entosphenus tridentatus and Lampetra spp.) movement distance and rate over dewatered substrate at shoreline slopes of 1%, 5%, 10% and 20% in a laboratory setting and modelled results using gamma regression models. Model results suggest both movement distance and movement rate increased with increasing slope and increasing larval length. We used the models to predict minimum distances and rates that 90%, 75% and 50% of medium-sized (75 mm) lampreys would move over dewatered substrates on slopes of 1%–20%. The models predicted that 50% of larvae could move distances of ≥31 cm at rates of ≥0.7 mm/s on a 1% slope and distances of ≥502 cm at rates of ≥8.6 mm/s on a 20% slope. We present an example scenario of how information on larval movement capabilities and shoreline slope could guide phased dewatering events to limit impacts to lampreys.

Aquaculture, Fish and Fisheries

Performance comparisons for artificially propagated and wild Pacific lamprey juveniles and larvae

Artificially propagated Pacific lamprey ( Entosphenus tridentatus ) are produced for restoration and for use in dam passage studies to reduce the demand for wild fish. Such uses require that animals are representative of their wild counterparts. Previous work indicated that this is true for Pacific lamprey larvae and juveniles reared in the hatchery with respect to the length of sustained swimming. However, more subtle differences in behaviour and performance that lamprey need to survive have not been assessed. In this study, artificially propagated and wild fish were compared in laboratory tests under no-flow conditions to examine light avoidance, burrowing speed, burst swim speed, volitional routine swim speed and time to come to rest. Most larvae burrowed in less than a minute, and we found highly significant differences ( p < 0.001) between artificially propagated and wild larvae burrowing times, a critical escape behaviour. This could have implications for studies of larval entrainment at irrigation diversion canals or in turbine boils at dams. Interestingly, all of the wild juveniles tested came to rest quickly after introduction to the chamber (1.5 min), while artificially propagated lamprey swam robotically near the surface and 48% did not come to rest in the first 10 min (median time to rest = 9.5 min). In contrast, wild juveniles quickly (median = 1.47 min) sought areas near the tank bottom and attached strongly with their oral disc. Such behavioural differences could have important survival consequences for artificially propagated lamprey as they approach turbine intakes, bypass screens and irrigation diversion headgates. This study highlights the need to conduct behavioural assays that examine subtleties of fish behaviour that can be missed with traditional swim tunnel comparisons.

Aquaculture, Fish and Fisheries

Blueprints for riverine cod nest boxes draw from multiple design considerations

Designing aquatic nest boxes is rarely afforded detailed scientific account. Here we provide some historical context for nest boxes used in production of large-bodied fishes of the Australian freshwater cod genus Maccullochella . Our experience with eastern freshwater cod is used as a case study to: (a) convey aspects of the complexity of the nest box design process and to (b) demonstrate the importance of visual literacy in project communication across the variety of contributors to the eco-design process. Specifically, we describe a new, two-variant, triangular nest box design for application in rivers and modifications to a standard stainless steel nest box for hatchery-pond-based spawning of eastern freshwater cod M. ikei . We designed the boxes to test adult preference for single versus double entrance/exits to cavities in hatchery and field environments. An important consideration specific to hatchery production is harvesting demersal, adhesive eggs prior to hatching to minimise fungal infection of eggs and physical loss of larvae, in addition to providing critical first feeding of larvae. In contrast, field nest box design incorporated multiple factors and associated trade-offs related to both internal and external design, ranging from manufacturer capability, material types, cost, transportability, hydrological performance, biodegradability, retrievability, as well as biological and ecological function. Only preliminary findings from field nest box deployments are provided here, and we focus primarily on elements of visual language in the form of conceptual drawings, sketches and final schematics which have been central to our process. We emphasise the benefit of harnessing input from multiple fields of expertise and documenting and testing designs of nest boxes for cavity nesting fishes, under both controlled hatchery and more complex field conditions.

Aquaculture, Fish and Fisheries

Sinoatrial contracaeciasis in Johnny Darters ( Etheostoma nigrum ) and Plains Topminnow ( Fundulus sciadicus ) from the South Platte drainage, Colorado

Intra-sinoatrial nematodes were incidentally recognized in wild-caught Colorado Johnny Darters ( Etheostoma nigrum , JD) in 2020–2021 and in Colorado Plains Topminnow ( Fundulus sciadicus , PTM) in 2023-2024. PTM and JD were evaluated histologically. Nematodes dissected from PTM were used for morphologic evaluation and molecular identification. The first and second internal transcribed spacers (ITS1 and ITS2) of ribosomal DNA were sequenced. Sinoatrial nematodes were found in two of 1232 JD (0.2%) and nine of 110 PTM (8.2%). Worms caused dilation or aneurysm of the sinus venosus. One JD had severe sinus venosus phlebitis. Morphologic, histologic and molecular features were diagnostic for Contracaecum spp. This is the first identification of larval Contracaecum in PTM, the first record of an intravascular nematode in this species, and the first documentation of vascular localization of Contracaecum larvae in JD. Vascular pathology could result in increased susceptibility to predation and favour the completion of the nematode life cycle. Parasites could become detrimental to population survival, especially those that are stressed by ecological and anthropogenic factors.

Colorado

Turning trash into treasure: Leveraging discarded filters for national-scale aquatic eDNA biomonitoring

Monitoring biodiversity changes over large spatiotemporal scales is critical for effective ecosystem conservation and management. This study investigates the potential of environmental DNA (eDNA) metabarcoding to enhance national-scale biomonitoring of freshwater diversity by leveraging discarded filters associated with routine water quality sampling from the U.S. Geological Survey's (USGS) National Water Quality Network (NWQN). We tested 375 samples from 103 NWQN sites for eDNA of native and non-native fish and found that 52% of the filters yielded fish eDNA for a total of 70 fish species detections. Of the filters that had fish eDNA present, an average of 3.7 species were detected. Benchmarking these results to USGS's Aquatic Gap Analysis Project (AGAP)—which includes both field-verified observations along with predictive models derived from fish capture and landscape predictor datasets—we found that eDNA from these filters detected only a fraction of the observed and expected fish diversity for these sites. Our results indicate that these discarded filters may not be sufficient for eDNA sampling of fish communities and posit that alternative filter types more appropriate for eDNA sampling may yield more valuable biomonitoring data. Nevertheless, we tested the efficacy of two novel approaches to facilitate large-scale biomonitoring. Though these filters did not yield adequate fish eDNA, the AGAP database provides a useful method for ground truthing fish species presence. The potential of integrating eDNA sampling into existing monitoring frameworks, which, when paired with more optimal eDNA methods, could be a cost-effective strategy to enhance biodiversity monitoring at large scales.

Aquaculture, Fish and Fisheries

Fish carcass deposition to suppress invasive lake trout through hypoxia causes limited, non-target effects on benthic invertebrates in Yellowstone Lake

Invasive species can have negative effects on native biodiversity and ecosystem function, and suppression is often required to minimize the effects. However, management actions to suppress invasive species may cause negative, unintended effects on non-target taxa. Across the United States, lake trout ( Salvelinus namaycush ) are invasive in many freshwater ecosystems, reducing native fish abundance and diversity through predation and competition. In an integrated pest management approach, lake trout embryos in Yellowstone Lake, Wyoming, are suppressed by depositing lake trout carcasses onto spawning sites; the carcasses reduce dissolved oxygen concentrations as they decay, causing embryo mortality. We conducted a field experiment during one ice-free season at four sites in Yellowstone Lake to investigate the non-target effects of carcass treatment on benthic invertebrates, which could have consequences for native fish diets. While overall invertebrate density and biomass did not respond to carcass treatment, Chironomidae midges and Sphaeriidae fingernail clams decreased in abundance. Carcass treatment altered invertebrate community structure based on density, but not biomass. Carcass treatment to suppress invasive fish embryos has spatially localized, non-target effects on some benthic invertebrate taxa. Given the small spatial extent of carcass treatment within the lake, we conclude it is unlikely that carcass treatment will alter food availability for native fishes.

Wyoming

Backpack electrofishing does not contribute to external signs of gas bubble trauma in sculpins

We exposed prickly sculpin Cottus asper and reticulate sculpin Cottus perplexus to electroshock and sham treatments in a controlled laboratory setting to determine if backpack electrofishing contributed to or exacerbated external signs of gas bubble trauma (GBT) in fish exposed to elevated total dissolved gas (TDG) levels. Fish were exposed to 115, 120 and 125% TDG (measured as percent of saturation) for various amounts of time (24–144 h) then subjected to a 5-s electroshock or sham treatment of no electroshock. Fish were examined to determine the incidence of GBT pre- and post-treatment, and all aspects (i.e., dorsal, ventral, left and right sides) of each fish were photographed. Across all TDG levels in all trials, no sculpin showed any change in GBT incidence following treatment. Analysis of GBT signs evident in photographs of 68 fish found no evidence of change in mean pre- and post-treatment gas bubble sizes in fish in any TDG trial, nor were any new gas bubbles found following treatment. We are aware of no physiological mechanism by which backpack electrofishing can cause GBT in sculpin, and as such, we believe using this gear should not increase GBT incidence rates in sculpin.

Aquaculture, Fish and Fisheries

Detection of Aeromonas salmonicida from water using a filtration method

Aeromonas salmonicida is a principal pathogen that contributes to mortality in hatchery-maintained Atlantic salmon that originated from the Connecticut and Merrimack rivers in the northeastern United States. Field tests were conducted to assess a filtration method for detection of A. salmonicida in water used to rear fishes. A presumptive identification of typical A. salmonicida was available within 72 h and the pathogen was confirmed within 96 h. This filtration method has been incorporated into daily management practices and provides results that allowed managers to make more informed decisions for fishery resources.

Aquaculture

A synthesis of the biology and ecology of sculpin species in the Laurentian Great Lakes and implications for the adaptive capacity of the benthic ecosystem

The Laurentian Great Lakes have experienced recent ecosystem changes that could lead to reductions in adaptive capacity and ultimately a loss of biodiversity and production throughout the food web. Observed changes in Great Lakes benthic communities include declines of native species and widespread success of invasive species like dreissenid mussels in all but Lake Superior. Understanding the ecology of native benthic deepwater preyfish and the reasons for their declines is important for predicting future losses in adaptive capacity and diversity, as well as managing the Great Lakes ecosystem to avoid such losses. Native sculpin species ( Cottus bairdii , C. cognatus , C. ricei , Myoxocephalus thompsonii ) historically were among the most abundant of the Great Lakes native deepwater benthic preyfish community and are an important link between offshore benthic and pelagic food webs. With one exception, these species have declined in abundance throughout the Great Lakes in recent years, but relatively little is known about their biology and ecology. This review synthesizes the available knowledge for the Great Lakes sculpin species and provides suggestions for future research efforts, which include understanding reproductive ecology and spawning behavior, connectivity and dispersal of populations, early life history, and influences of interactions with native and non-native species.

Great Lakes

Atlantic sturgeon status and movement ecology in an extremely small spawning habitat: The Nanticoke River-Marshyhope Creek, Chesapeake Bay

Biotelemetry of Atlantic sturgeon Acipenser oxyrinchus oxyrinchus has exposed spawning behaviors in ever-smaller estuaries, surprising for the NW Atlantic’s largest anadromous species. Small estuary — the Nanticoke River and Marshyhope Creek (Chesapeake Bay) — spawning-run adults and their habitat affinities are described based upon direct sampling and biotelemetry for the period 2014–2018. High rates of recapture over this period indicate a very small adult population size. Genetics revealed a very small effective population size ( N e = 12.2, 95% CI = 6.7–21.9). Most returns occurred during September at 20–27 °C. All fish departed as fall temperatures declined below 20 °C. Multi-beam sonar identified small-dispersed areas of sand-cobble and cobble, which could support adhesive embryo attachment. Movements of adults were higher during nighttime than daytime, with habitat preference for hard bottom habitats. Genetic evidence indicates that the sudden discovery of this population was unrelated to a hatchery release of several thousand juvenile sturgeon (Hudson River progeny) in 1997. The newly discovered population in the Nanticoke River exhibits a degree of resilience including multiple spawning regions and suitable spawning habitat. Still, critical vulnerabilities persist including curtailed habitat, continued agricultural and maritime development, invasive blue catfish, and a very small apparent population size.

Delaware, Maryland

Healing ogaa (walleye Sander vitreus) waters: Lessons and future directions for inland fisheries rehabilitation

ulturally, economically, and nutritionally valuable inland fisheries face many new challenges on top of chronic disturbances. In the upper midwestern United States, declines in cool- and coldwater fisheries have been observed, including ogaa/walleye Sander vitreus . In response to population declines, agencies have implemented rehabilitation efforts, and the frequency and intensity of efforts have increased recently given declines. Evaluating intervention outcomes is critical for institutional learning and to understand strategy effectiveness, but is difficult to do when multiple interventions are applied concurrently and in the absence of replication or controls. This review documents walleye rehabilitation efforts in the upper Midwest U.S., where a rehabilitation effort was defined as a coordinated effort with the stated intention to restore a self-sustaining population such that it required limited-to-no further intervention. We discuss: (1) strategies used; (2) similarities and differences in metrics of success; (3) factors leading to success; and (4) recommendations that may increase future successful rehabilitation. Strategies included harvest regulation changes, stocking, fish community manipulations, habitat enhancement, and partner discussions. Overall, evaluations of environmental, habitat, and fish community factors causing walleye population declines were not included in most rehabilitation plans before implementation. This review highlights an increased need for ecosystem-based fisheries management principles and cultivating ecological conditions that favor walleye as a potential path for future rehabilitation plans. Lessons drawn from rehabilitation plans are applicable to global inland fisheries to inform the conservation of declining fish populations.

Michigan, Minnesota, Wisconsin

Maintaining the competitiveness of the American Fisheries Society journals: An assessment based on influence and cost-effectiveness

Recent changes in the landscape of scientific publishing prompted the Publications Overview Committee of the American Fisheries Society (AFS) to review the Society's portfolio of scientific journals. We evaluated journals based on metrics in two categories: (1) citation-based measures of the influence of a journal on the scientific literature, and (2) measures of the cost-effectiveness of a journal (citation rate adjusted for subscription cost). Over the long-term, we found that ecology journals had far stronger citation-based influence than fisheries and aquatic sciences journals, and that journals publishing primarily basic research had stronger influence than journals publishing applied research (including four AFS journals and Fisheries magazine). In evaluating the current status of fisheries and aquatic sciences journals, we found that metrics of influence and cost-effectiveness provided considerably different portrayals of journals relative to their peers. In terms of citation-based influence, we found that the AFS journal Transactions of the American Fisheries Society (TAFS) and Fisheries magazine were competitive with highly regarded peer fisheries journals, but that North American Journal of Aquaculture (NAJA) and Journal of Aquatic Animal Health (JAAH) were less influential than their peers. The citation-based influence of North American Journal of Fisheries Management (NAJFM) was intermediate between TAFS/Fisheries and NAJA/JAAH . For journals like NAJFM and NAJA , we expect that much of the scientific influence on policy and management is not captured by citations in the primary literature, and alternative methods of evaluation may be needed. All of the AFS journals ranked highly with regard to cost-effectiveness because their subscription costs are low, and these rankings are in accordance with membership needs and the strategic mission of AFS to provide broad and timely dissemination of scientific information. We conclude by suggesting ways to increase the influence of AFS journals without compromising their accessibility and affordability, and offer advice about methods and frequency for future journal evaluations.

Fisheries

Perspectives: Gene Expression in Fisheries Management

Functional genes and gene expression have been connected to physiological traits linked to effective production and broodstock selection in aquaculture, selective implications of commercial fish harvest, and adaptive changes reflected in non-commercial fish populations subject to human disturbance and climate change. Gene mapping using single nucleotide polymorphisms (SNPs) to identify functional genes, gene expression (analogue microarrays and real-time PCR), and digital sequencing technologies looking at RNA transcripts present new concepts and opportunities in support of effective and sustainable fisheries. Genomic tools have been rapidly growing in aquaculture research addressing aspects of fish health, toxicology, and early development. Genomic technologies linking effects in functional genes involved in growth, maturation and life history development have been tied to selection resulting from harvest practices. Incorporating new and ever-increasing knowledge of fish genomes is opening a different perspective on local adaptation that will prove invaluable in wild fish conservation and management. Conservation of fish stocks is rapidly incorporating research on critical adaptive responses directed at the effects of human disturbance and climate change through gene expression studies. Genomic studies of fish populations can be generally grouped into three broad categories: 1) evolutionary genomics and biodiversity; 2) adaptive physiological responses to a changing environment; and 3) adaptive behavioral genomics and life history diversity. We review current genomic research in fisheries focusing on those that use microarrays to explore differences in gene expression among phenotypes and within or across populations, information that is critically important to the conservation of fish and their relationship to humans.

Current Zoology

Susceptibility of Koi and Yellow Perch to infectious hematopoietic necrosis virus by experimental exposure

Infectious hematopoietic necrosis virus (IHNV) is a novirhabdoviral pathogen that originated in western North America among anadromous Pacific salmonids. Severe disease epidemics in the late 1970s resulting from IHNV's invasion into farmed Rainbow Trout Oncorhynchus mykiss in North America, Asia, and Europe emphasized IHNV's ability to adapt to new hosts under varying rearing conditions. Yellow Perch Perca flavescens and Koi Carp Cyprinus carpio (hereafter, “Koi”) are aquaculture-reared fish that are highly valued in sport fisheries and the ornamental fish trade, respectively, but it is unknown whether these fish species are vulnerable to IHNV infection. In this study, we exposed Yellow Perch, Koi, and steelhead (anadromous Rainbow Trout) to IHNV by intraperitoneal injection (10 6 PFU/fish) and by immersion (5.7×10 5 PFU/mL) for 7 h, and monitored fish for 28 d. The extended immersion exposure and high virus concentrations used in the challenges were to determine if the tested fish had any level of susceptibility. After experimental exposure, Yellow Perch and Koi experienced low mortality (<6%) compared with steelhead (>35%). Virus was found in dead fish of all species tested and in surviving Yellow Perch by plaque assay and quantitative reverse transcription polymerase chain reaction (qPCR), with a higher prevalence in Yellow Perch than Koi. Infectious virus was also detected in Yellow Perch out to 5 d after bath challenge. These findings indicate that Yellow Perch and Koi are highly resistant to IHNV disease under the conditions tested, but Yellow Perch are susceptible to infection and may serve as possible virus carriers.

Journal of Aquatic Animal Health

Nesting populations of double-crested cormorants in the United States and Canada

Double-crested cormorants ( Phalacrocorax auritus ) are receiving increasing attention in North America because of depredations at aquaculture facilities and alleged impacts on sport and commercial fisheries. We obtained recent (most since 1994) estimates for the number of nesting double-crested cormorants in the United States and Canada from published references and by conducting telephone interviews with State and Provincial biologists. Using published data, we also determined annual rates of change in the number of cormorants since about 1990. The estimated minimum number of nesting pairs (colonies) of double-crested cormorants was 372,000 (852). Most cormorants nested in the Interior region (68 percent). Overall, double-crested cormorants increased about 2.6 percent annually during the early 1990’s. The greatest decline (−7.9-percent annual change) was in the West Coast–Alaska region. The greatest increase (6.0-percent annual change) was for the Interior region. The increase there was primarily a consequence of a 22-percent annual increase in Ontario and U.S. States bordering the Great Lakes. These baseline population data are essential for monitoring trends in nesting populations and for developing informed management decisions. However, the completeness, quality, and timing of surveys varied substantially among jurisdictions. Population estimates and rates of change should, therefore, be used with caution. Methods and timing of future surveys should be coordinated among political jurisdictions (at least within regions) to improve accuracy of estimates and allow more meaningful comparisons of population status.

Conference Paper

Emerging viral diseases of fish and shrimp

The rise of aquaculture has been one of the most profound changes in global food production of the past 100 years. Driven by population growth, rising demand for seafood and a levelling of production from capture fisheries, the practice of farming aquatic animals has expanded rapidly to become a major global industry. Aquaculture is now integral to the economies of many countries. It has provided employment and been a major driver of socio-economic development in poor rural and coastal communities, particularly in Asia, and has relieved pressure on the sustainability of the natural harvest from our rivers, lakes and oceans. However, the rapid growth of aquaculture has also been the source of anthropogenic change on a massive scale. Aquatic animals have been displaced from their natural environment, cultured in high density, exposed to environmental stress, provided artificial or unnatural feeds, and a prolific global trade has developed in both live aquatic animals and their products. At the same time, over-exploitation of fisheries and anthropogenic stress on aquatic ecosystems has placed pressure on wild fish populations. Not surprisingly, the consequence has been the emergence and spread of an increasing array of new diseases. This review examines the rise and characteristics of aquaculture, the major viral pathogens of fish and shrimp and their impacts, and the particular characteristics of disease emergence in an aquatic, rather than terrestrial, context. It also considers the potential for future disease emergence in aquatic animals as aquaculture continues to expand and faces the challenges presented by climate change.

Veterinary Research

Fisheries dependent and independent data inform a capture technique for an emerging invasive fish species in the mainstem Mississippi River; Black Carp Mylopharyngodon piceus

Black Carp Mylopharyngodon piceus were imported into the United States in the 1970s and 1980s for use in aquaculture; escape occurred and reported wild captures increased. Lacking species-specific capture methods, we assessed fisheries dependent incidental Black Carp catches for a common method, hoop nets, by kernel density analysis to identify an area of increased reporting and compare frequency of reports for water temperature, river stage, and capture date to identify seasonality. We then used fisheries independent effort to identify co-occurrence of species via non-metric multi-dimensional scaling and fit Black Carp catch and environmental covariates by generalized linear models to assess site-specific environmental covariates facilitating capture. The best approximating distribution was refitted for predictions and inference. The greatest density of fisheries dependent hoop net captures (39 %) was near the confluence of the Missouri and Mississippi rivers, primarily from July-September. Captures were characterized by median water temperature 26.7°C, river stage 5.02 m, and 223 day-of-year (DOY; mid-August). Ordination of fisheries independent catch identified similarity in environmental covariates of Smallmouth Buffalo Ictiobus bubalus and Black Carp. The probability of capturing ≥ 1 Black Carp increased with DOY, decreased with increasing current velocity, and increased with depth. Most captures occurred in outside bends (87 %) or side channels (12 %). Probability of Black Carp capture was low but increased in summer and early fall when stage is lower, facilitating reduced current velocity and access to deeper areas. Results may be validated beyond this river segment to test if site-specific hydrology or habitat characteristics facilitated increased commercial and biologist capture and for replication.

Illinois, Missouri