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USGS2012

Impact of thiamine deficiency on T-cell dependent and T-cell independent antibody production in lake trout

Lake trout Salvelinus namaycush on thiamine-replete and thiamine-depleted diets were evaluated for the effects of thiamine status on in vivo responses to the T-dependent antigen trinitophenol (TNP)-keyhole limpet hemocyanin (TNP-KLH), the T-independent antigen trinitrophenol-lipolysaccaharide (TNP-LPS), or Dulbecco's phosphate-buffered saline (DPBS; negative control fish). Plasma antibody concentrations were evaluated for possible differences in total anti-TNP activity as well as differences in response kinetics. Associations between anti-TNP activity and muscle and liver thiamine concentrations as well as ratios of muscle-to-liver thiamine to anti-TNP activity were also examined. Thiamine-depleted lake trout that were injected with TNP-LPS exhibited significantly more anti-TNP activity than thiamine-replete fish. The depleted fish injected with TNP-LPS also exhibited significantly different response kinetics relative to thiamine-replete lake trout. No differences in activity or kinetics were observed between the thiamine-replete and -depleted fish injected with TNP-KLH or in the DPBS negative controls. Anti-TNP activity in thiamine-depleted lake trout injected with TNP-KLH was positively associated with muscle thiamine pyrophosphate (thiamine diphosphate; TPP) concentration. A negative association was observed between the ratio of muscle-to-liver TPP and T-independent responses. No significant associations between anti-TNP activity and tissue thiamine concentration were observed in the thiamine-replete fish. We demonstrated that thiamine deficiency leads to alterations in both T-dependent and T-independent immune responses in lake trout.

Journal of Aquatic Animal Health↗

USGS2015

Instream cover and shade mediate avian predation on trout in semi-natural streams

Piscivory by birds can be significant, particularly on fish in small streams and during seasonal low flow when available cover from predators can be limited. Yet, how varying amounts of cover may change the extent of predation mortality from avian predators on fish is not clear. We evaluated size-selective survival of coastal cutthroat trout (Oncorhynchus clarkii clarkii) in replicated semi-natural stream sections. These sections provided high (0.01 m2 of cover per m2 of stream) or low (0.002 m2 of cover per m2 of stream) levels of instream cover available to trout and were closed to emigration. Each fish was individually tagged, allowing us to track retention of individuals during the course of the 36-day experiment, which we attributed to survival from predators, because fish had no other way to leave the streams. Although other avian predators may have been active in our system and not detected, the only predator observed was the belted kingfisher Megaceryle alcyon, which is known to prey heavily on fish. In both treatments, trout >20.4 cm were not preyed upon indicating an increased ability to prey upon on smaller individuals. Increased availability of cover improved survival of trout by 12% in high relative to low cover stream sections. Trout also survived better in stream sections with greater shade, a factor we could not control in our system. Collectively, these findings indicate that instream cover and shade from avian predators can play an important role in driving survival of fish in small streams or during periods of low flow.

Oregon↗

USGS2019

Brook trout (Salvelinus fontinalis) movement and survival after removal of two dams on the West Branch of the Wolf River, Wisconsin

Dam removals allow fish to access habitats that may provide ecological benefits and risks, but the extent of fish movements through former dam sites has not been thoroughly evaluated for many species. We installed stationary PIT antennas in 2016 and 2017 to evaluate movements and survival of brook trout Salvelinus fontinalis in the West Branch of the Wolf River (WBWR) in central Wisconsin following removal of two dams and channel modifications designed to promote fish movement. These changes provided access to lacustrine habitats that might provide suitable winter habitat or act as ecological sinks. We used multistate models to estimate transition probabilities between river sections, to determine whether brook trout: (a) moved between multiple river sections and (b) entered lacustrine habitats as seasonal refuges, but eventually returned to lotic habitat. We also used a Cormack-Jolly-Seber model to evaluate whether apparent survival of brook trout in the WBWR was comparable to other populations. Few fish moved among river sections or used lacustrine habitat (<5% of tagged fish); most brook trout remained in sections where they were initially tagged, potentially due to quality habitat located throughout the river. Like other studies, brook trout in the WBWR appear to experience high mortality based on low number of detections, few physical recaptures and an estimated eight-month apparent survival rate of 0.27. In scenarios where fish can already access suitable habitat, removal of dams may not result in substantial increases in fish movement and colonisation of newly accessible habitat may not occur immediately.

Wisconsin↗

USGS2023

Seasonal shifts in diel vertical migrations by lake-dwelling coastal cutthroat trout, Oncorhynchus clarkii clarkii, reflect thermal regimes and prey distributions

Lakes provide important habitat for salmonids that may use them as a primary feeding area between periods of reproduction. The seasonal changes in vertical thermal structure in lakes can affect the distribution of salmonids on seasonal and diel time scales as they search for, consume, and digest prey that also exploits the water column's distribution of food, temperature and light. Our goal was to analyse the vertical distribution of wild, native coastal cutthroat trout ( Oncorhynchus clarkii clarkii ) in Lake Washington on daily and seasonal time scales. This lake is stratified in the summer and isothermal in winter, allowing us to compare vertical movements between periods with and without thermal structure in water 50 m deep. We predicted that trout would be deeper in the water column during stratified months and shallower during isothermal months, and shallower at night than in the day. Overall, the trout showed these patterns in the depths and temperatures they occupied, tending to be within or below the thermocline in the summer but not in the coolest water available, and closer to the surface when the lake was isothermal. The trout were also closer to the surface at night and deeper during the day. The vertical range of these diel movements shifted with the seasons–deepest in October, as the thermocline deepened and weakened, and shallowest in January when the lake was isothermal. These seasonal and diel vertical distribution patterns by the trout optimise metabolism for growth, and facilitate feeding on planktivorous fishes that also show seasonal and diel vertical distribution changes.

Washington↗

USGS2015

Genetic diversity is related to climatic variation and vulnerability in threatened bull trout

Understanding how climatic variation influences ecological and evolutionary processes is crucial for informed conservation decision-making. Nevertheless, few studies have measured how climatic variation influences genetic diversity within populations or how genetic diversity is distributed across space relative to future climatic stress. Here, we tested whether patterns of genetic diversity (allelic richness) were related to climatic variation and habitat features in 130 bull trout ( Salvelinus confluentus ) populations from 24 watersheds (i.e., ~4–7th order river subbasins) across the Columbia River Basin, USA. We then determined whether bull trout genetic diversity was related to climate vulnerability at the watershed scale, which we quantified on the basis of exposure to future climatic conditions (projected scenarios for the 2040s) and existing habitat complexity. We found a strong gradient in genetic diversity in bull trout populations across the Columbia River Basin, where populations located in the most upstream headwater areas had the greatest genetic diversity. After accounting for spatial patterns with linear mixed models, allelic richness in bull trout populations was positively related to habitat patch size and complexity, and negatively related to maximum summer temperature and the frequency of winter flooding. These relationships strongly suggest that climatic variation influences evolutionary processes in this threatened species and that genetic diversity will likely decrease due to future climate change. Vulnerability at a watershed scale was negatively correlated with average genetic diversity ( r = −0.77; P < 0.001); watersheds containing populations with lower average genetic diversity generally had the lowest habitat complexity, warmest stream temperatures, and greatest frequency of winter flooding. Together, these findings have important conservation implications for bull trout and other imperiled species. Genetic diversity is already depressed where climatic vulnerability is highest; it will likely erode further in the very places where diversity may be most needed for future persistence.

Global Change Biology↗

USGS1995

Partial replacement of fish meal with spray-dried blood powder to reduce phosphorus concentrations in diets for juvenile rainbow trout, Oncorhynchus mykiss (Walbaum)

Feeds formulated with 5.7, 11.4 and 22.7% spray-dried blood powder, also called blood flour (88.1% protein, 0.2% total phosphorus), were compared with a control diet with 49% herring meal (64% protein, 2.1% total phosphorus) and no blood powder for rearing juvenile rainbow trout. Oncorhynchus my kiss (Walbaum). Diets with 5.7, 11.4 and 22.7% blood powder contained 1.22,1.03 and 0.84% phosphorus, respectively, compared with 1.36% phosphorus in the control diet. Over 12 weeks, differences in mean specific growth (range 2.23-2.35 day −1 ) or feed conversion (range 1.04-1.09) among the four diets were not significant ( P > 0.05). Apparent digestibility of phosphorus in the diet with 22.7% blood powder was greater (45.2%) than that in the control diet (31.6%). Increases in phosphorus concentrations in the water in which trout were fed diets with blood powder (range 16-20 μg −1 total phosphorus) were 33-47% less ( P <0.05) than in tanks where trout were fed the control diet (30μg −1 total phosphorus). Feed formulations for rainbow trout prepared with 22.7% blood powder and 17.0% fish meal would contain 65.3% less fish meal and 38% less total phosphorus than present in the control diet, which was a representation of a modern feed formulation for rainbow trout.

Aquaculture Research↗

USGS2006

Sanguinicola fontinalis sp. Nov., (Digenea: Sanguinicolidae): A blood parasite of brook trout, Salvelinus fontinalis (Mitchill), and longnose dace, Rhinichthys cataractae (Valenciennes)

Sanguinicola fontinalis sp. nov., from the branchial, renal and cardiac blood vessels of brook trout. Salvelinus fontinalis (Mitchill), and longnose dace, Rhinichthys cataractae (Valenciennes), is described. The new species most closely resembles, hut differs from, Sanguinicola davisi of steelhead and rainbow trout, Salmo gairdneri Richardson. The adult differs from all known North American species in having 29–33 lateral tufts of blunt spines. The snail host is Leptoxis (Mudalia) carinata (Bruquière, 1792). Lodged and migrating miracidia caused considerable gill damage in the brook trout, resulting in high mortality when the fish were moved. To remove the hazard, the most severely affected brook trout were destroyed and the ponds drained and disinfected. Adult worms from Pennsylvania brook trout and West Virginia longnose dace were studied, as well as infected snails.

Journal of Fish Diseases↗

USGS2007

Effects of carbon dioxide exposure on intensively cultured rainbow trout Oncorhynchus mykiss: Physiological responses and fillet attributes

Rainbow trout Oncorhynchus mykiss (261.6 × 24.7 g initial weight, mean × SEM) at 13.1 × 0.2 C were exposed for 94 d to one of three CO 2 treatments: control (22.1 × 2.8 mg/L), medium (34.5 × 3.8 mg/L), or high (48.7 × 4.4 mg/L). Trout were checked daily for survival, and fish were sampled at 0, 28, 56, and 84 d for physiological responses, growth, and fillet quality assessments. Trout were also challenged to a 15‐min crowding stress at 93 d to assess their ability to initiate a stress response during hypercapnia. Chronically exposed trout showed nearly 100% survival through 84 d exposure (1 of 1,500 fish died). Growth and physiological results showed that increasing elevated CO 2 , concentrations result in corresponding decreased growth rates and CO 2 specific physiological parameters: The medium and high CO 2 treatments had significantly slower growth and subsequently smaller fish by 84 d. Exposed trout also showed significantly ( P < 0.05) decreased plasma chloride for medium and high CO 2 treatments compared to the control from 28 through 84 d. Decreased growth and smaller fish in the medium and high CO 2 treatments resulted in correspondingly smaller fresh and smoked fillet weights. Chronic CO 2 exposure did not result in notable changes in ultimate muscle pH. Exposure to 15‐min crowding stress at 93 d resulted in significant changes in hematocrit, plasma cortisol, glucose, and chloride for all treatment groups. CO 2 ‐specific changes were detected in hematocrit, plasma cortisol, and plasma chloride responses following the 15‐min crowding stress.

Journal of the World Aquaculture Society↗

USGS2012

RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays

Hybridization with introduced rainbow trout threatens most native westslope cutthroat trout populations. Understanding the genetic effects of hybridization and introgression requires a large set of high-throughput, diagnostic genetic markers to inform conservation and management. Recently, we identified several thousand candidate single-nucleotide polymorphism (SNP) markers based on RAD sequencing of 11 westslope cutthroat trout and 13 rainbow trout individuals. Here, we used flanking sequence for 56 of these candidate SNP markers to design high-throughput genotyping assays. We validated the assays on a total of 92 individuals from 22 populations and seven hatchery strains. Forty-six assays (82%) amplified consistently and allowed easy identification of westslope cutthroat and rainbow trout alleles as well as heterozygote controls. The 46 SNPs will provide high power for early detection of population admixture and improved identification of hybrid and nonhybridized individuals. This technique shows promise as a very low-cost, reliable and relatively rapid method for developing and testing SNP markers for nonmodel organisms with limited genomic resources.

Molecular Ecology Resources↗

USGS2021

Climate change and expanding invasive species drive widespread declines of native trout in the northern Rocky Mountains, USA

Climate change and invasive species are major threats to native biodiversity, but few empirical studies have examined their combined effects at large spatial and temporal scales. Using 21,917 surveys collected over 30 years, we quantified the impacts of climate change on the past and future distributions of five interacting native and invasive trout species throughout the northern Rocky Mountains, USA. We found that the occupancy of native bull trout and cutthroat trout declined by 18 and 6%, respectively (1993–2018), and was predicted to decrease by an additional 39 and 16% by 2080. However, reasons for these occupancy reductions markedly differed among species: Climate-driven increases in water temperature and decreases in summer flow likely caused declines of bull trout, while climate-induced expansion of invasive species largely drove declines of cutthroat trout. Our results demonstrate that climate change can affect ecologically similar, co-occurring native species through distinct pathways, necessitating species-specific management actions.

Montana↗

USGS2015

Multiscale hydrogeomorphic influences on bull trout ( Salvelinus confluentus ) spawning habitat

We investigated multiscale hydrogeomorphic influences on the distribution and abundance of bull trout ( Salvelinus confluentus ) spawning in snowmelt-dominated streams of the upper Flathead River basin, northwestern Montana. Within our study reaches, bull trout tended to spawn in the finest available gravel substrates. Analysis of the mobility of these substrates, based on one-dimensional hydraulic modeling and calculation of dimensionless shear stresses, indicated that bed materials in spawning reaches would be mobilized at moderate (i.e., 2-year recurrence interval) high-flow conditions, although the asynchronous timing of the fall–winter egg incubation period and typical late spring – early summer snowmelt high flows in our study area may limit susceptibility to redd scour under current hydrologic regimes. Redd occurrence also tended to be associated with concave-up bedforms (pool tailouts) with downwelling intragravel flows. Streambed temperatures tracked stream water diurnal temperature cycles to a depth of at least 25 cm, averaging 6.1–8.1 °C in different study reaches during the spawning period. Ground water provided thermal moderation of stream water for several high-density spawning reaches. Bull trout redds were more frequent in unconfined alluvial valley reaches (8.5 versus 5.0 redds·km −1 in confined valley reaches), which were strongly influenced by hyporheic and groundwater – stream water exchange. A considerable proportion of redds were patchily distributed in confined valley reaches, however, emphasizing the influence of local physical conditions in supporting bull trout spawning habitat. Moreover, narrowing or “bounding” of these alluvial valley segments did not appear to be important. Our results suggest that geomorphic, thermal, and hydrological factors influence bull trout spawning occurrence at multiple spatial scales.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2016

Prey size and availability limits maximum size of rainbow trout in a large tailwater: insights from a drift-foraging bioenergetics model

The cold and clear water conditions present below many large dams create ideal conditions for the development of economically important salmonid fisheries. Many of these tailwater fisheries have experienced declines in the abundance and condition of large trout species, yet the causes of these declines remain uncertain. Here, we develop, assess, and apply a drift-foraging bioenergetics model to identify the factors limiting rainbow trout (Oncorhynchus mykiss) growth in a large tailwater. We explored the relative importance of temperature, prey quantity, and prey size by constructing scenarios where these variables, both singly and in combination, were altered. Predicted growth matched empirical mass-at-age estimates, particularly for younger ages, demonstrating that the model accurately describes how current temperature and prey conditions interact to determine rainbow trout growth. Modeling scenarios that artificially inflated prey size and abundance demonstrate that rainbow trout growth is limited by the scarcity of large prey items and overall prey availability. For example, shifting 10% of the prey biomass to the 13 mm (large) length class, without increasing overall prey biomass, increased lifetime maximum mass of rainbow trout by 88%. Additionally, warmer temperatures resulted in lower predicted growth at current and lower levels of prey availability; however, growth was similar across all temperatures at higher levels of prey availability. Climate change will likely alter flow and temperature regimes in large rivers with corresponding changes to invertebrate prey resources used by fish. Broader application of drift-foraging bioenergetics models to build a mechanistic understanding of how changes to habitat conditions and prey resources affect growth of salmonids will benefit management of tailwater fisheries.

Arizona↗

USGS2018

Rainbow trout movement behavior and habitat occupancy are influenced by sex and Pacific salmon presence in an Alaska river system

We used spatially continuous field-measured and remotely-sensed aquatic habitat characteristics paired with weekly ground-based telemetry tracking and snorkel surveys to describe movements and habitat occupancy of adult rainbow trout (N = 82) in a runoff-fed, salmon-influenced southcentral Alaska river system. We found that during the ice-free feeding season (June through September) rainbow trout occurrence was associated more with fine-scale (channel unit) characteristics relative to coarse-scale (stream reach) variables. The presence of Pacific salmon (which provide an important seasonal food subsidy), and habitat size were particularly useful predictors. Weekly movement distance differed between pre- and post- spawning salmon arrival, but did not vary by sex. Habitat quality, season, and the arrival of spawning salmon influenced the likelihood of rainbow trout movement, and fish moved farther to seek out higher quality habitats. Because rainbow trout respond to habitat factors at multiple scales and seek out salmon-derived subsidies, it will be important to take a multiscale approach in protecting trout and salmon populations and managing the associated fisheries.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2020

Rapid early development and feeding benefits an invasive population of lake trout

Lake trout ( Salvelinus namaycush ) were discovered in Yellowstone Lake in 1994 and their population expanded dramatically despite intensive suppression. The lake is species-depauperate, with no major lake trout embryo predators. We hypothesized that without this predation threat, lake trout free embryo feeding and growth may be greater than in their native range, leading to increased survival of age-0 individuals and rapid population growth. We compared length, developmental rate, and feeding patterns of lake trout free embryos captured at a spawning site in Yellowstone Lake with free embryos captured in their native range in Lake Champlain, Vermont. More embryos were feeding, contained more food, and were significantly longer at the same developmental stages in Yellowstone Lake. With an abundance of available food and minimal threat of predation, free embryos remained on the spawning site in Yellowstone Lake later into the summer than in Lake Champlain and achieved a greater maximum length before they dispersed. Greater food consumption and associated growth likely leads to high survival of lake trout free embryos in Yellowstone Lake, contributing to rapid population growth.

New York, Quebec, Vermont, Wyoming↗

USGS2021

The interactive effects of stream temperature, stream size, and non-native species on Yellowstone cutthroat trout

Climate change and non-native species are considered two of the biggest threats to native salmonids in North America. We evaluated how non-native salmonids and stream temperature and discharge were associated with Yellowstone cutthroat trout ( Oncorhynchus clarkii bouvieri ) distribution, abundance, and body size to gain a more complete understanding of the existing threats to native populations. Allopatric Yellowstone cutthroat trout were distributed across a wide range of average August temperatures (3.2 to 17.7 °C), but occurrence significantly declined at colder temperatures (<10 °C) with increasing numbers of non-natives. At warmer temperatures, occurrence remained high, despite sympatry with non-natives. Yellowstone cutthroat trout relative abundance was significantly reduced with increasing abundance of non-natives, with the greatest impacts at colder temperatures. Body sizes of large Yellowstone cutthroat trout (90th percentile) significantly increased with warming temperatures and larger stream size, highlighting the importance of access to these more productive stream segments. Considering multiple population-level attributes demonstrates the complexities of how native salmonids (such as Yellowstone cutthroat trout) are likely to be affected by shifting climates.

Idaho, Wyoming↗

USGS2026

Invasive hybridization has unpredicted and variable effects on trout survival in contrasting environments

Invasive hybridization between native and introduced species is widespread, especially in fishes, yet its effects on fitness-related traits across environments remain poorly understood. We combined individual genetic admixture estimates with capture–recapture data to quantify how hybridization between native Westslope Cutthroat Trout ( Oncorhynchus lewisi ) and invasive Rainbow Trout ( Oncorhynchus mykiss ) influences survival. We measured individual survival of 5186 trout across three populations in contrasting environments. Non-native admixture significantly affected survival in two populations, with positive effects during summer and negative effects during winter. Prior research has shown hybridization increases with stream temperature; however, survival patterns did not follow this trend. In a warmer stream, native trout in all size-classes had ≥20% higher annual survival than hybrids, whereas in a cooler stream, juvenile native trout had ≥20% lower survival than hybrids. These findings indicate that hybridization effects on survival are complex and vary among populations, environments, and size-classes. Landscape patterns of hybridization may therefore not reflect local survival (or fitness) outcomes, emphasizing that measures fitness-related traits across populations and environments could elucidate the eco-evolutionary consequences of invasive hybridization.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2005

Stream acidification and mortality of brook trout (Salvelinus fontinalis) in response to timber harvest in Catskill Mountain watersheds, New York, USA

Effects of clear-cut and timber-stand improvement (TSI) harvests on water chemistry and mortality of caged brook trout (Salvelinus fontinalis) were evaluated in a study of three Catskill Mountain streams, 1994-2000. Harvests removed 73% of tree basal area (BA) from a clearcut subbasin, 5% BA from a TSI subbasin, and 14% BA at a site below the confluence of both streams. A fourth nonharvested site served as a control. Water quality and trout mortality were affected only in the clearcut stream. Acidity and concentrations of nitrate and inorganic monomeric aluminum (Alim) increased sharply during high flows after the first growing season (fall 1997). Acid-Alim episodes were severe during this period and decreased steadily in magnitude and duration thereafter. All trout at this site died within 7 days during spring 1998 and 85% died during spring 1999. Only background mortality was observed in other years at this site and at the other three sites during all tests. The absence of mortality in TSI watersheds indicates that limited harvests should not harm brook trout populations in acid-sensitive streams. Effects of tree harvests on fish communities are of concern, however, because many stream-dwelling species are more sensitive to acidified waters than brook trout. ?? 2005 NRC.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS1962

The relative efficiency of nylon and cotton gill nets for taking lake trout in Lake Superior

The change from cotton to nylon twine for gill nets in 1949–52 resulted in a sharp increase in the efficiency of the most important gear used for taking lake trout in Lake Superior, and, consequently, biased estimates of fishing intensity and abundance severely.From early May to the end of September 1961, short gangs (2000 or 4000 linear feet) of cotton and nylon nets were fished in parallel sets for lake trout. A total of 343,000 feet of gill netting was lifted. Nylon nets were 2.25 times as efficient as cotton nets for taking legal-sized fish and 2.8 times as efficient for undersized lake trout. The average lengths of legal, undersized, and all lake trout taken in nets of the two materials did not differ greatly. The percentage of the catch which was undersized (less than 1.25&ensp;lb, dressed weight) was 20.8 in nylon nets and 17.7 in cotton. The relative efficiency of cotton and nylon nets showed no trend during the season. The efficiency ratio determined in this study was closely similar to that obtained by earlier workers.Correction of estimates of fishing intensity and abundance for the greater efficiency of the nylon nets used since 1951 has not been attempted. The drastic decline of the lake trout fishery has forced fishermen to make changes in fishing practices in the past few years that cause new bias of an unknown extent to estimates of fishing intensity.

Journal of the Fisheries Research Board of Canada↗