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Using Cape Sable seaside sparrow distribution data for water management decision support

The Cape Sable Seaside Sparrow (Ammodramus maritimus mirabilis; hereafter sparrow) is endemic to south Florida and a key indicator species of marl prairie, the most diverse freshwater community in the Florida Everglades. Marl prairie habitat is shaped by intermediate levels of disturbances such as flooding, drying, and fire, which maintain periphyton production (Gaiser et al. 2011), vegetation composition (Sah et al. 2011), and habitat structure for wildlife (Lockwood et al. 2003). Historically, patches of marl prairie shifted in response to changing climatic conditions,; however, habitat loss and hydrologic alteration have restricted the sparrow’s range and increased their sensitivity to changing hydropatterns. As a result, sparrow numbers have declined as much as 60% range-wide since 1992 (Curnutt et al. 1998, Nott et al. 1998). Currently, the sparrow is restricted to the freshwater prairies of the Everglades National Park (ENP) and Big Cypress Preserve (Lockwood et al. 1997). Because this non-migratory bird is restricted in its range it was among the first species to be listed as endangered by the US Fish and Wildlife Service on March 11, 1967 (Pimm et al. 2000). Now protected by the Endangered Species Act of 1973, the sparrow is listed as an endangered species, and the marl prairies that it resides in are listed as critical habitat. Since its designation as an endangered species, federal agencies have a statutory obligation to not jeopardize the survival of the species or modify its critical habitat. However, there are still uncertainties in how to increase suitable habitat within and surrounding the six existing sparrow subpopulations (Fig. 1) which are vulnerable to environmental stochasticity because of their small population size and restricted range. Since Because maintenance and creation of suitable habitat is seen as the most important pathway to the persistence of sparrow subpopulations (Sustainable Ecosystems Institute 2007), emphasis should be on identifying factors affecting sparrow habitat suitability and expanding the total area of suitable habitat over a gradient of environmental conditions. Our objective is to improve the definition of suitable sparrow habitat based on the relationship between daily sparrow distributions from 1992-present and hydrologic and habitat variables. Further, these models can provide an estimate of habitat quality when linked with estimates of reproductive responses.

Report

Incidence of pollution, bioaccumulation, biomagnification, and toxic effects of per- and polyfluoroalkyl substances (PFAS) in aquatic ecosystems: A review

Per- and polyfluoroalkyl substances (PFAS) are persistently accumulated in both environmental media and biological systems, leading to significant toxicological effects. Although research on PFAS has expanded in recent years, systematic reviews on its concentration distribution in aquatic environments and biota, as well as its toxicological effects, remain scarce. Moreover, existing literature lacks systematic analyses of diverse aquatic environments and organisms. This review investigates the contamination levels of PFAS in aquatic environments. It also provides a systematic analysis of bioaccumulation in planktonic, swimming, and benthic organisms, including bioaccumulation factors (BAF), biomagnification factors (BMF), trophic magnification factors (TMF), and biota-sediment accumulation factors (BSAF), and evaluates the potential toxic effects on aquatic ecosystems. This study aims to provide theoretical support for the environmental regulation and management of PFAS. Additionally, it seeks to offer data references and potential research directions for future studies, thereby promoting the advancement of PFAS-related research and policy development.

Aquatic Toxicology

Topographic complexity and roughness of a tropical benthic seascape

Topographic complexity is a fundamental structural property of benthic marine ecosystems that exists across all scales and affects a multitude of processes. Coral reefs are a prime example, for which this complexity has been found to impact water flow, species diversity, nutrient uptake, and wave-energy dissipation, among other properties. Despite its importance, only limited assessments are available regarding the distribution or range of topographic complexity within or between benthic communities. Here, we show substantial variability in topographic complexity over the entire inner-shelf seascape of a tropical island. Roughness, estimated in terms of fractal dimension, served as a proxy for topographic complexity, and was computed for linear transects (D T ), as well as the benthic surface (D S ). Spatial variability in both D T and D S was correlated with the known distribution of benthic cover types in the seascape. Transect roughness values ranged from 1.0 to 1.7, with features along the shelf edge being markedly anisotropic with an along-shore bias, whereas regions with high scleractinian coral cover were nearly isotropic and exhibited minimal directional bias. Surface-roughness values ranged from 2.0 in predominantly hardbottom areas with low coral cover to 2.5 in areas with high coral cover. Quantifying roughness across the substrates and biological communities for an entire seascape provides a synoptic view of its spatial variability at scales appropriate for numerous research efforts, including ecosystem studies, parameterizing hydrodynamic models, and designing monitoring programs.

Geophysical Research Letters

Multiple elements of soil biodiversity drive ecosystem functions across biomes

The role of soil biodiversity in regulating multiple ecosystem functions is poorly understood, limiting our ability to predict how soil biodiversity loss might affect human wellbeing and ecosystem sustainability. Here, combining a global observational study with an experimental microcosm study, we provide evidence that soil biodiversity (bacteria, fungi, protists and invertebrates) is significantly and positively associated with multiple ecosystem functions. These functions include nutrient cycling, decomposition, plant production, and reduced potential for pathogenicity and belowground biological warfare. Our findings also reveal the context dependency of such relationships and the importance of the connectedness, biodiversity and nature of the globally distributed dominant phylotypes within the soil network in maintaining multiple functions. Moreover, our results suggest that the positive association between plant diversity and multifunctionality across biomes is indirectly driven by soil biodiversity. Together, our results provide insights into the importance of soil biodiversity for maintaining soil functionality locally and across biomes, as well as providing strong support for the inclusion of soil biodiversity in conservation and management programmes.

Nature Ecology and Evolution

Linking community-climate disequilibrium to ecosystem function

Turnover in species composition often lags behind the pace of climate change, resulting in mismatches between climate and communities. However, the impact of these community-climate disequilibria on ecosystem functions is rarely considered, and current methods for measuring disequilibria assume that species ranges were, until recently, in equilibrium with climate. Here, we develop a simple theoretical model to address both of these problems by linking community-climate disequilibrium with ecosystem functioning. We show how disequilibrium can impair functioning in the near-term even when climate change is expected to enhance functioning in the long-term. Responses are most likely to change over time in communities where turnover is slow, the impact of disequilibrium counteracts the direct effects of climate on ecosystem function, and pre-existing disequilibrium is large. These findings emphasise the importance of precise and unbiased estimates of community-climate disequilibria for improving ecological forecasts. By fitting our model to time series of both climate and ecosystem function from a metacommunity simulation, we show the potential for community-climate disequilibrium to be inferred without direct knowledge about species' distributions or climatic tolerances. We end by outlining a research agenda to apply dynamic disequilibrium concepts and test novel hypotheses across diverse ecosystems.

Ecology Letters

Robust geographical determinants of infection prevalence and a contrasting latitudinal diversity gradient for haemosporidian parasites in Western Palearctic birds

Identifying robust environmental predictors of infection probability is central to forecasting and mitigating the ongoing impacts of climate change on vector‐borne disease threats. We applied phylogenetic hierarchical models to a data set of 2,171 Western Palearctic individual birds from 47 species to determine how climate and landscape variation influence infection probability for three genera of haemosporidian blood parasites ( Haemoproteus , Leucocytozoon , and Plasmodium ). Our comparative models found compelling evidence that birds in areas with higher vegetation density (captured by the normalized difference vegetation index [NDVI]) had higher likelihoods of carrying parasite infection. Magnitudes of this relationship were remarkably similar across parasite genera considering that these parasites use different arthropod vectors and are widely presumed to be epidemiologically distinct. However, we also uncovered key differences among genera that highlighted complexities in their climate responses. In particular, prevalences of Haemoproteus and Plasmodium showed strong but contrasting relationships with winter temperatures, supporting mounting evidence that winter warming is a key environmental filter impacting the dynamics of host‐parasite interactions. Parasite phylogenetic community diversities demonstrated a clear but contrasting latitudinal gradient, with Haemoproteus diversity increasing towards the equator and Leucocytozoon diversity increasing towards the poles. Haemoproteus diversity also increased in regions with higher vegetation density, supporting our evidence that summer vegetation density is important for structuring the distributions of these parasites. Ongoing variation in winter temperatures and vegetation characteristics will probably have far‐reaching consequences for the transmission and spread of vector‐borne diseases.

Molecular Ecology

From wetlands to wet spots: Environmental tracking and the fate of carboniferous elements in early permian tropical fl oras

Diverse wetland vegetation flourished at the margins of the Midland Basin in north-central Texas during the Pennsylvanian Period. Extensive coastal swamps and an ever-wet, tropical climate supported lush growth of pteridosperm, marattialean fern, lycopsid, and calamite trees, and a wide array of ground cover and vines. As the Pennsylvanian passed into the Permian, the climate of the area became drier and more seasonal, the great swamps disappeared regionally, and aridity spread. The climatic inferences are based on changes in sedimentary patterns and paleosols as well as the general paleobotanical trends. The lithological patterns include a change from a diverse array of paleosols, including Histosols (ever-wet waterlogged soils), in the late Pennsylvanian to greatly diminished paleosol diversity with poorly developed Vertisols by the Early-Middle Permian transition. In addition, coal seams were present with wide areal distribution in the late Pennsylvanian whereas beds of evaporates were common by the end of the Early Permian. During this climatic transition, wetland plants were confi ned to shrinking "wet spots" found along permanent streams where the vegetation they constituted remained distinct if increasingly depauperate in terms of species richness. By Leonardian (late Early Permian) time, most of the landscape was dominated by plants adapted to seasonal drought and a deep water table. Wetland elements were reduced to scattered pockets, dominated primarily by weedy forms and riparian specialists tolerant of flooding and burial. By the Middle Permian, even these small wetland pockets had disappeared from the region. ?? 2006 Geological Society of America.

Special Paper of the Geological Society of America

Juvenile salmonid monitoring following removal of Condit Dam in the White Salmon River Watershed, Washington, 2017

Condit Dam, at river kilometer 5.3 on the White Salmon River, Washington, was breached in 2011, and removed completely in 2012, providing anadromous salmonids with the opportunity to recolonize habitat blocked for nearly 100 years. Prior to dam removal, a multi-agency workgroup concluded that the preferred salmonid restoration alternative was to allow natural recolonization. Monitoring would assess fish recolonization efficacy, followed by management evaluation 5 years after dam removal. Limited monitoring of salmon and steelhead recolonization has occurred since 2011. The U.S. Geological Survey began juvenile salmonid monitoring in 2016 and did a second year during 2017, with sampling efforts like those of 2016. River conditions differed between the 2 years, both during (that is, high flows in 2017) and prior to (that is, 2015 summer drought conditions and December 2015 White Salmon River flood event) sampling. We operated a rotary screw trap at river kilometer 2.3 (3 kilometers downstream of the former dam site) from early April through early June to assess species diversity, and production of smolt and other migrant life stages. We also used backpack electrofishing during summer to assess juvenile salmonid distribution and abundance. Both sampling methods provided the opportunity to collect genetic samples (analysis of samples was not covered under funding received from the Mid-Columbia Fisheries Enhancement Group for the 2017 monitoring efforts) and to tag fish with passive integrated transponder (PIT) tags, which will provide life-history data through future recaptures and detections. The screw trap captured steelhead (anadromous rainbow trout, Oncorhynchus mykiss ), fry, parr, and smolts; coho salmon ( O. kisutch ) fry, parr, and smolts; and Chinook salmon ( O. tshwaytscha ) fry, parr, and one smolt. Prolonged high water and some missed trapping periods during 2017 prevented us from generating smolt estimates. Despite difficult trapping conditions, the number of coho salmon fry and parr, and steelhead fry and parr captured in 2017 exceeded those captured during 2016. The number of age-0 Chinook salmon captured in the screw trap during 2017 was much higher ( n = 222) than in 2016 ( n = 4). Electrofishing in tributaries provided information on distribution and abundance of juvenile coho salmon and O. mykiss . Juvenile coho salmon were again found in Mill and Buck Creeks and, for the first time, in Rattlesnake Creek (all three creeks are upstream of the former dam site). In both Rattlesnake and Buck Creeks, age-0 O. mykiss abundance decreased between 2016 and 2017; however, age-1 and older O. mykiss and age-0 coho salmon abundance increased between years at both sites. Data on O. mykiss abundance at sites in Buck and Rattlesnake Creeks is providing the opportunity to begin to understand trends and variability post-dam removal and to compare to pre-dam removal periods. Mean age-0 O. mykiss abundance (fish per meter [fish/m]) at the Rattlesnake Creek site has been slightly lower during post-dam removal (mean = 3.0, n = 2, range = 2.4–3.6) than pre-dam removal (mean = 3.4, n = 5, range = 1.5–5.1). However, the presence of juvenile coho salmon in Rattlesnake Creek during 2017 (0.5 fish/m) brought total age-0 salmonid abundance in 2017 to 2.9 fish/m. Mean age-1 or older O. mykiss abundance (fish/m) at the Rattlesnake Creek site has been lower post-dam removal (mean = 0.2, n = 2, range = 0.1–0.3) than pre-dam removal (mean = 0.5, n = 2, range = 0.3–0.8). Mean age-0 O. mykiss abundance (fish/m) at the Buck Creek site has been higher post-dam removal (mean = 2.1, n = 2, range = 1.2–3.0) than pre-dam removal (mean = 1.8, n = 2, range = 1.6–1.9). The addition of age-0 coho salmon to Buck Creek brings mean age-0 salmonid abundance post-dam removal to 2.7 fish/m (range = 1.9–3.4). Mean age-1 or older O. mykiss abundance (fish/m) in Buck Creek has been slightly higher post-dam removal (mean = 0.8, n = 2, range = 0.6–1.1) than pre-dam removal (mean = 0.6, n = 2, both years 0.6).

Washington

Descriptions of anisotropy and heterogeneity and their effect on ground-water flow and areas of contribution to public supply wells in a karst carbonate aquifer system

Delineation of areas of contribution to wells tapping a karst carbonate aquifer system can be extremely difficult using conventional approaches designed for isotropic and homogeneous aquifers, because ground-water flow tends to be through solution-enhanced conduits. Nonradial flow along preferential zones can result in inaccurate estimates of flow paths and traveltimes. Because of the large variability in factors affecting contributing areas and an imperfect understanding of how these factors can vary, the estimation of contributing areas is an approximation at best. To better understand the effects of aquifer anisotropy and heterogeneity on areas of contribution, an exploratory modeling approach was used. MODFLOW, a numerical flow model, and MODPATH, a particle tracking program, were used to generate time-related areas of contribution for six hypothetical carbonate aquifer system types. The six types were conceptualized to approximate different types of aquifer anisotropy and heterogeneity. These include: (1) an isotropic and homogeneous single-layer system; (2) an anisotropic in a horizontal plane single layer system; (3) a discrete vertically fractured single-layer system; (4) a multilayered system; (5) a doubly porous single-layer system; and (6) a vertically and horizontally interconnected heterogeneous system. The simulated aquifer anisotropy was 5:1 (Kxx/Kyy) determined from TENSOR2D results. The simulated discrete vertical fracture network represents locations inferred from mapped photolineaments. The simulated enhanced flow zones were determined from borehole video and geophysical logs. Areas of contribution were simulated for two prototype regions. The two prototypes were selected to be representative of the hydrologic diversity within the study area and were designated the Central Swamp and Lake Terrace regions. Localized conditions in pumping, production well distribution, and aquifer transmissivity affect the size, shape, and orientation of areas of contribution to public supply wells. The simulated areas of contribution are 60 percent larger in the Central Swamp region where pumpage is more than double and transmissivity is about half that of the Lake Terrace region. Although these factors are important, this study focused on the effects from hydrogeologic factors common to karst carbonate aquifer systems. This study indicates that the distribution and type of aquifer anisotropy and heterogeneity will affect the size, shape, and orientation of areas of contribution in a karst carbonate aquifer system. The size of the 50-year time-related areas of contribution ranged from 8.2 to 39.1 square miles in the Central Swamp region and from 4.0 to 18.3 square miles in the Lake Terrace region. Simulations showed that the size of areas of contribution is primarily affected by simulated withdrawal rates, effective porosity of the carbonate rock, and transmissivity. The shape and orientation of the simulated areas of contribution primarily result from aquifer anisotropy, well distribution, flow along solution-enhanced zones, and short-circuiting of flow through fracture networks. Comparisons also were made between protection zones delineated using analytical models and areas of contribution delineated using numerical models. The size of the 5-year time-related protection zone in the Central Swamp region using an analytical model was almost twice as large as the numerically simulated area of contribution, and more than eight times larger than the numerically simulated area of contribution in the Lake Terrace region. The differences in size are primarily the result of how the flow field is approximated. The analytical method assumes only lateral flow to wells but numerical methods allow particles to move laterally and vertically. Additionally, multiple-well-interference effects resulting from the close proximity of several pumping wells cause individual capture zones to converge or diverge, depending on the difference in pumping rates and orientation among the wells. Such an interpretation is not available from analytical methods. The simulated distributions of aquifer anisotropy and heterogeneity, in this study, were highly conceptualized, but were based on plausible occurrences of anisotropy and heterogeneity inherent in carbonate aquifer systems.

Florida

Seasonal comparison of aquatic macroinvertebrate assemblages in a flooded coastal freshwater marsh

Marsh flooding and drying may be important factors affecting aquatic macroinvertebrate density and distribution in coastal freshwater marshes. Limited availability of water as a result of drying in emergent marsh may decrease density, taxonomic diversity, and taxa richness. The principal objectives of this study are to characterize the seasonal aquatic macroinvertebrate assemblage in a freshwater emergent marsh and compare aquatic macroinvertebrate species composition, density, and taxonomic diversity to that of freshwater marsh ponds. We hypothesize that 1) freshwater emergent marsh has lower seasonal density and taxonomic diversity compared to that of freshwater marsh ponds; and 2) freshwater emergent marsh has lower taxa richness than freshwater marsh ponds. Seasonal aquatic macroinvertebrate density in freshwater emergent marsh ranged from 0 organisms/m 2 (summer 2009) to 91.1 ± 20.53 organisms/m 2 (mean ± SE; spring 2009). Density in spring was higher than in all other seasons. Taxonomic diversity did not differ and there were no unique species in the freshwater emergent marsh. Our data only partially support our first hypothesis as aquatic macroinvertebrate density and taxonomic diversity between freshwater emergent marsh and ponds did not differ in spring, fall, and winter but ponds supported higher macroinvertebrate densities than freshwater emergent marsh during summer. However, our data did not support our second hypothesis as taxa richness between freshwater emergent marsh and ponds did not statistically differ.

Louisiana

Paraphyly of Cinclodes fuscus (Aves: Passeriformes: Furnariidae): Implications for taxonomy and biogeography

The Andes are a hotspot of global avian diversity, but studies on the historical diversification of Andean birds remain relatively scarce. Evolutionary studies on avian lineages with Andean–Patagonian distributions have focused on reconstructing species-level phylogenies, whereas no detailed phylogeographic studies on widespread species have been conducted. Here, we describe phylogeographic patterns in the Bar-winged Cinclodes ( Cinclodes fuscus ), a widespread and common species of ovenbird (Furnariidae) that breeds from Tierra del Fuego to the northern Andes. Traditionally, C. fuscus has been considered a single species composed of nine subspecies, but its long and narrow range suggests the possibility of considerable genetic variation among populations. Sequences of two mitochondrial genes revealed three discrete and geographically coherent groups of C. fuscus , occupying the southern, central, and northern Andes. Surprisingly, phylogenetic analyses indicated that these groups were more closely related to other species of Cinclodes than to each other. Relationships of the southern and northern C. fuscus clades to other species of Cinclodes were straightforward; in combination with available information on plumage, behavioral, and vocal variation, this suggests that each should be recognized as a distinct biological species. The central Andean group was paraphyletic with respect to C. oustaleti , and relationships among these taxa and C. olrogi were poorly resolved. We suggest that the central Andean C. fuscus should also be considered a different species, pending new information to clarify species limits in this group. These new phylogenetic data, along with recently developed methods, allowed us to review the biogeography of the genus, confirming southern South America and the central Andes as important areas for the diversification of these birds.

Molecular Phylogenetics and Evolution

Feral horse space use and genetic characteristics from fecal DNA

Feral horses ( Equus ferus caballus ) in the western United States are managed by the Bureau of Land Management (BLM) and United States Forest Service in designated areas on public lands with a goal of maintaining populations in balance with multiple uses of the landscape. Small, isolated populations can be at risk of extirpation from stochastic events and deleterious genetic effects resulting from inbreeding and reduced heterozygosity. The genetic diversity of feral horse herds is periodically monitored using blood or hair samples collected during management gathers (i.e., occasions when the herd is rounded up). We conducted a study to examine genetic characteristics of the feral horse population at the BLM Little Book Cliffs Herd Management Area (HMA) in Colorado, USA, using non-invasively collected fecal samples. Additionally, we explored whether genotypes could be used to document space use and potential sub-population development. We used a random sampling scheme, walking transects in sampling areas covering most of the HMA to find and collect fecal samples of all ages, except those that were deteriorating. We collected >1,800 fecal samples from across the study area in May, August, and October 2014. We then identified unique individuals using a suite of microsatellite loci. Our estimates of genetic diversity from fecal samples were higher than those reported from blood and hair samples taken during recent horse gathers, likely because our sample size and spatial distribution was larger. Genotypes revealed that some individuals were found only in certain parts of the study area and at a higher proportion than random; thus, they could be considered residents in those sampling areas. Using discriminant function analyses, we detected 5 genetic groups in the sample population, but these did not correspond to individuals in specific parts of the study area. Our results support the use of fecal DNA to augment direct observations of horse presence and could be used to detect habitat use and areas of high density. Non-invasive techniques such as fecal DNA sampling can help managers decide whether new individuals need to be translocated to a closed population to maintain genetic diversity without the human safety and animal welfare concerns associated with gathers and invasive techniques.

Colorado

A comparative phylogeographic approach to facilitate recovery of an imperiled freshwater mussel (Bivalvia: Unionida: Potamilus inflatus)

North American freshwaters are among the world’s most threatened ecosystems, and freshwater mussels are among the most imperiled inhabiting these systems. A critical aspect of conservation biology is delineating patterns of genetic diversity, which can be difficult when a taxon has been extirpated from a significant portion of its historical range. In such cases, evaluating conservation and recovery options may benefit by using surrogate species as proxies when assessing overall patterns of genetic diversity. Here, we integrate the premise of surrogate species into a comparative phylogeographic framework to hypothesize genetic relationships between extant and extirpated populations of Potamilus inflatus by characterizing genetic structure in co-distributed congeners with similar life histories and dispersal capabilities. Our mitochondrial and nuclear sequence data exhibited variable patterns of genetic divergence between Potamilus spp. native to the Mobile and Pascagoula + Pearl + Pontchartrain (PPP) provinces. However, hierarchical Approximate Bayesian Computation indicated that the diversification between Mobile and PPP clades was synchronous and represents a genetic signature of a common history of vicariance. Recent fluctuations in sea-level appear to have caused Potamilus spp. in the PPP to form a single genetic cluster, providing justification for using individuals from the Amite River as a source of brood stock to re-establish extirpated populations of P. inflatus. Future studies utilizing eDNA and genome-wide molecular data are essential to better understand the distribution of P. inflatus and establish robust recovery plans. Given the imperilment status of freshwater mussels globally, our study represents a useful methodology for predicting relationships among extant and extirpated populations of imperiled species.

Florida, Alabama, Mississippi, Louisiana

High shrew diversity on Alaska's Seward Peninsula: Community assembly and environmental change

In September 2010, 6 species of shrews (genus: Sorex ) were collected at a single locality on the Seward Peninsula of Alaska. Such high sympatric diversity within a single mammalian genus is seldom realized. This phenomenon at high latitudes highlights complex Arctic community dynamics that reflect significant turnover through time as a consequence of environmental change. Each of these shrew species occupies a broad geographic distribution collectively spanning the entire Holarctic, although the study site lies within Eastern Beringia, near the periphery of all individual ranges. A review of published genetic evidence reflects a depauperate shrew community within ice-free Beringia through the last glaciation, and recent assembly of current diversity during the Holocene.

Alaska

Marine latitudinal diversity gradients, niche conservatism and out of the tropics and Arctic: Climatic sensitivity of small organisms

Aim The latitudinal diversity gradient (LDG) is a consequence of evolutionary and ecological mechanisms acting over long history, and thus is best investigated with organisms that have rich fossil records. However, combined neontological‐palaeontological investigations are mostly limited to large, shelled invertebrates, which keeps our mechanistic understanding of LDGs in its infancy. This paper aims to describe the modern meiobenthic ostracod LDG and to explore the possible controlling factors and the evolutionary mechanisms of this large‐scale biodiversity pattern. Location Present‐day Western North Atlantic. Taxon Ostracoda. Methods We compiled ostracod census data from shallow‐marine environments of the western North Atlantic Ocean. Using these data, we documented the marine LDG with multiple metrics of alpha, beta (nestedness and turnover) and gamma diversity, and we tested whether macroecological patterns could be governed by different environmental factors, including temperature, salinity, dissolved oxygen, pH and primary productivity. We also explored the geologic age distribution of ostracod genera to investigate the evolutionary mechanisms underpinning the LDG. Results Our results show that temperature and climatic niche conservatism are important in setting LDGs of these small, poorly dispersing organisms. We also found evidence for some dispersal‐driven spatial dynamics in the ostracod LDG. Compared to patterns observed in marine bivalves, however, dispersal dynamics were weaker and they were bi‐directional, rather than following the ‘out‐of‐the‐tropics’ model. Main conclusions Our detailed analyses revealed that meiobenthic organisms, which comprise two‐thirds of marine diversity, do not always follow the same rules as larger, better‐studied organisms. Our findings suggest that the understudied majority of biodiversity may be more sensitive to climate than well‐studied, large organisms. This implies that the impacts of ongoing Anthropocene climatic change on marine ecosystems may be much more serious than presently thought.

Journal of Biogeography

A Bayesian hierarchical modeling approach for species diversity in ecology

Species diversity is the foundation of many ecological disciplines. This metric is often approximated using species richness and evenness, even though actual richness likely exceeds observations due to imperfect sampling methods. Estimating the “true” species richness, which includes identifying the number of missing species, has intrigued ecologists for decades. We adopted a parametric model that appeared in Fisher et al. (1943), which models the numbers of individuals from different species as random samples from a negative binomial distribution, and developed a Bayesian computational approach to directly estimate the distribution model parameters. The model parameters represent species abundance and evenness, and can be used to derive species richness. We evaluated our parametric approach using (1) a simulation study and (2) three historical data sets. Furthermore, we illustrated the hierarchical modeling approach to combine data from multiple parallel studies using a biannual fishery survey data set. Our parametric model formulation is computationally efficient, and the hierarchical structure facilitates embedding diversity estimation into broader application, such as assessing spatial and temporal trends in species diversity associated with environmental stressors. Additionally, because the two parameters of the negative binomial distribution model represent species abundance and evenness of a community, this parametric approach facilitates a deeper understanding of the ecological systems under study. The negative binomial distribution model works with a wide range of species frequency distribution types. As a result, our emphasis on a parametric model can help us characterize the structure of an ecosystem and provide a greater depth of ecologically meaningful information.

Ecological Informatics

Composition of the seed bank in drawdown areas of navigation pool 8 of the upper Mississippi river

In an effort to enhance aquatic plant production and habitat diversity on the Upper Mississippi River (UMR), resource managers considered water level reduction as a management tool to increase the area of emergent and submersed aquatic vegetation by natural seed germination. To quantify the availability of seed, we assessed the potential seed bank of selected areas of Navigation Pool 8 of the UMR from substrate samples collected in spring 2000. We tested these samples for viable seed content under four hydrologic conditions: dry, moist, shallow flooded and submerged. Forty-seven species were identified in the seed bank, including 27 obligate wetland, 10 facultative wetland and 7 upland species. Dominant taxa within the seed bank included Sagittaria spp., Lindernia dubia, Zosterella dubia, Cyperus spp., Eragrostis spp. and Leersia oryzoides. Of the four hydrologic treatments, moist substrates had the greatest species diversity and were the most productive, yielding an average density of 1420 seedlings m -2 . Emergent and submersed aquatic species were widely distributed, each type occurring in more than 90% of the samples. Timing of seedling germination varied among species and has implications for scheduling drawdowns to promote establishment of desired species. Seed bank results were correlated with the vegetation response on substrates exposed during a reduction of water levels of Pool 8 during summer 2001. Experimentally determining the composition and viability of seed banks from drawdown areas provides information useful in predicting the types of vegetation that may develop on exposed substrates. Further, these findings provide resource managers a better understanding of the potential for achieving desired vegetation response through water level reductions.

River Research and Applications

Toxicity of contaminated sediments in dilution series with control sediments

T he use of dilutions has been the foundation of our approach for assessing contaminated water, and accordingly, it may be important to establish similar or parallel approaches for sediment dilutions. Test organism responses to dilution gradients can identify the degree of necessary sediment alteration to reduce the toxicity. Using whole sediment dilutions to represent the complex interactions of in situ sediments can identify the toxicity, but the selection of the appropriate diluent for the contaminated sediment may affect the results and conclusions drawn. Contaminated whole sediments were examined to evaluate the toxicity of dilutions of sediments with a diversity of test organisms. Dilutions of the contaminated sediments were prepared with differing diluents that varied in organic carbon content, particle size distribution, and volatile solids. Studies were conducted using four macroinvertebrates and a vascular, rooted plant. Responses by some test organisms followed a sigmoidal dose-response curve, but others followed a U-shaped curve. Initial dilutions reduced toxicity as expected, but further dilution resulted in an increase in toxicity. The type of diluent used was an important factor in assessing the sediment toxicity, because the control soil reduced toxicity more effectively than sand as a diluent of the same sediment. Using sediment chemical and physical characteristics as an indicator of sediment dilution may not be as useful as chemical analysis of contaminants, but warrants further investigation.

Chemosphere