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At least 523 records · Page 29Linked to original sources
USGS2022

Blood biochemistry and hematology of adult and chick brown pelicans in the northern Gulf of Mexico: Baseline health values and ecological relationships

The northern Gulf of Mexico supports a diverse community of nearshore seabirds during both breeding and nonbreeding periods of the annual cycle and is also a highly industrialized marine ecosystem with substantial levels of oil and gas development particularly in the west and central regions. Stakeholders in the region often assess risk to species of interest based on these differing levels of development. We collected blood samples from 81 adult and 35 chick eastern brown pelicans ( Pelecanus occidentalis carolinensis ) from 10 colonies across the northern Gulf of Mexico and used these to establish baseline values for hematology and blood biochemistry. We assessed the potential influence of body condition, sex and home range size on hematology and blood biochemistry. We also assessed potential influences of oil and gas activity by considering differing levels of oil and gas development that occur regionally throughout the study area. Although blood analyte concentrations of adults and chicks were often associated with these regional differences, the pattern we observed was not entirely consistent with the differing levels of oil and gas activity across the Gulf, suggesting that regional levels of oil and gas activity around breeding sites may not be the primary drivers of hematology and blood biochemistry. We note that baseline values or reference intervals are not available for other nearshore seabirds that breed in the northern Gulf. Given that exposure and risk may differ among this suite of species based on diet, foraging strategies and life history strategies, similar assessments and monitoring may be warranted.

Alabama, Florida, Louisiana, Mississippi, Texas↗
USGS2019

Molecular characterization of Bathymodiolus mussels and gill symbionts associated with chemosynthetic habitats from the U.S. Atlantic margin

Mussels of the genus Bathymodiolus are among the most widespread colonizers of hydrothermal vent and cold seep environments, sustained by endosymbiosis with chemosynthetic bacteria. Presumed species of Bathymodiolus are abundant at newly discovered cold seeps on the Mid-Atlantic continental slope, however morphological taxonomy is challenging, and their phylogenetic affinities remain unestablished. Here we used mitochondrial sequence to classify species found at three seep sites (Baltimore Canyon seep (BCS; ~400m); Norfolk Canyon seep (NCS; ~1520m); and Chincoteague Island seep (CTS; ~1000m)). Mitochondrial COI (N = 162) and ND4 (N = 39) data suggest that Bathymodiolus childressi predominates at these sites, although single B. mauritanicus and B. heckerae individuals were detected. As previous work had suggested that methanotrophic and thiotrophic interactions can both occur at a site, and within an individual mussel, we investigated the symbiont communities in gill tissues of a subset of mussels from BCS and NCS. We constructed metabarcode libraries with four different primer sets spanning the 16S gene. A methanotrophic phylotype dominated all gill microbial samples from BCS, but sulfur-oxidizing Campylobacterota were represented by a notable minority of sequences from NCS. The methanotroph phylotype shared a clade with globally distributed Bathymodiolus spp. symbionts from methane seeps and hydrothermal vents. Two distinct Campylobacterota phylotypes were prevalent in NCS samples, one of which shares a clade with Campylobacterota associated with B. childressi from the Gulf of Mexico and the other with Campylobacterota associated with other deep-sea fauna. Variation in chemosynthetic symbiont communities among sites and individuals has important ecological and geochemical implications and suggests shifting reliance on methanotrophy. Continued characterization of symbionts from cold seeps will provide a greater understanding of the ecology of these unique environments as well and their geochemical footprint in elemental cycling and energy flux.

Delaware, Georgia, Maryland, New Jersey, North Car↗
USGS2019

Flow modification in the Nation’s streams and rivers

This report summarizes a national assessment of flowing waters conducted by the U.S. Geological Survey’s (USGS) National Water-Quality Assessment (NAWQA) Project and addresses several pressing questions about the modification of natural flows in streams and rivers. The assessment is based on the integration, modeling, and synthesis of monitoring data collected by the USGS and the U.S. Environmental Protection Agency at more than 7,000 streams and rivers across the conterminous United States from 1980 to 2014. Key findings include the following. First, flow in many of the Nation’s streams and rivers is different from what it would be under natural conditions. In particular, low flows are more frequent, are of shorter duration, and vary less from one year to the next than they would naturally. In addition, high flows have been reduced in magnitude, are of shorter duration, are less frequent, and vary less from one year to the next than they would naturally. Other characteristics of natural flows also have been modified. Second, over the last 60 years (1955–2014), climatic trends have caused a change of 50 percent or more in one or more streamflow attributes at two-thirds of climate-sensitive streamgaging sites. However, these climate-induced changes have been less influential on streamflow modification than have land and water-management practices. Third, in every region assessed, streamflow modification was associated with reduced ecological health, as indicated by two biological communities—invertebrates and fish. Biological communities were increasingly likely to be impaired (defined as having lost a statistically significant number of species) in streams with flows most different from natural conditions. Finally, several case studies are presented that illustrate viable management strategies for balancing the water needs of people and ecosystems.

Circular↗
USGS2019

Estimating sediment flux to Jamaica Bay, New York

Tidal wetland loss in Jamaica Bay, New York, is well documented. Maintaining wetlands is important from an environmental and ecological perspective and because wetlands buffer coastal communities from storm damage. An estimate of suspended-sediment flux through Rockaway Inlet is needed to improve understanding of sediment dynamics in Jamaica Bay and could be used in salt marsh restoration efforts. To estimate sediment flux, an index-velocity station and turbidity sensor were installed and operated in Rockaway Inlet near the mouth of Jamaica Bay from November 2014 to December 2016 and point and cross-sectional suspended-sediment samples were collected and analyzed. Index-velocity data coupled with cross-sectional acoustic Doppler current profiler measurements were used to develop an index-velocity rating. A simple linear regression rating with a strong coefficient of determination (R 2 of 0.981) was developed. Discharge was computed from the stage-area and index-velocity relations, and a low-pass Godin filter was used to remove the tidal aliasing. A second simple linear regression (R 2 of 0.75) between fixed-point suspended-sediment concentration (SSC) samples and turbidity allowed for the calculation of SSC through Rockaway Inlet, and then sediment flux was found by multiplying SSC and discharge for continuous (6-minute) data. Turbidity values were low in the near-ocean conditions at Rockaway Inlet, with daily means ranging from 0.6 to 8.2 formazin nephelometric units during the period of November 2014 through December 2016. During this time, computed daily mean suspended-sediment concentrations ranged from 3 to 13 milligrams per liter. High sediment loads generally occurred during incoming tides, during both storm and nonstorm conditions, suggesting a net inward sediment flux into Jamaica Bay. The fate of sediment after it enters Jamaica Bay was not investigated. Trends in sediment flux during major storms could not be evaluated because no major storms occurred during this investigation.

New York↗
USGS2023

Stimulation of aquatic bacteria from Mammoth Cave, Kentucky, by sublethal concentrations of antibiotics

Many microorganisms secrete secondary metabolites with antibiotic properties; however, there is debate whether the secretions evolved as a means to gain a competitive edge or as a chemical signal to coordinate community growth. The objective of this research was to investigate if select antibiotics acted as a weapon or as a chemical signal by exposing communities of aquatic cave bacteria to increasing concentrations of antibiotics. Water samples were collected from six cave locations where actinobacterial mats appeared to be plentiful. Bacterial growth was measured using colony counts on 10 % tryptic soy agar augmented with increasing concentrations of erythromycin, tetracycline, kanamycin, gentamicin, or quaternary ammonia compounds (QAC). Colony counts generally decreased as the gentamicin, kanamycin and QAC dose increased. In contrast, the colony numbers increased on agar plates supplemented with 0.01 mg L −1 , 0.10 mg L −1 and 1.00 mg L −1 erythromycin or tetracycline. A 10.00 mg L −1 dose of each antibiotic treatment reduced bacteria colonies by 98 % or more. Community-level physiological capabilities were evaluated using Ecolog plates inoculated with cave water dosed with either 0.00 mg L −1 or 0.10 mg L −1 of erythromycin. Incubation with the antibiotic almost doubled the number of food substrates used in the first 24 hours. There was a significant increase in the use of acetyl glucosamine, arginine, and putrescine when bacteria were exposed to 0.10 mg L −1 erythromycin triggered by the antibiotic acting as a chemical messenger. Principal component analysis confirmed a shift in substrate preferences when erythromycin was added. A conceptual ecological model is proposed based on the response of aquatic cave bacteria to sublethal antibiotics.

Kentucky↗
USGS2011

Introduction: An ecoregional assessment of the Wyoming Basins

The Wyoming Basins Ecoregional Assessment (WBEA) area in the western United States contains a number of important land cover types, including nearly one-fourth of the sagebrush ( Artemisia spp.) in North America. Although relatively unappreciated until recent decades, the broad open landscapes dominated by sagebrush communities have received increasing attention for their ecological value and the resources that they contain (Knick and Connelly 2011). As many as 350 wildlife species depend on sagebrush ecosystems for all or part of their life requirements (Wisdom et al. 2005a). Within the WBEA, intact sagebrush landscapes provide an important stronghold for populations of greater sage-grouse ( Centrocercus urophasianus ), recently listed as a candidate species under the Endangered Species Act (U.S. Department of the Interior 2010). Numerous other plant and vertebrate species of state or national concern also occur within the WBEA study area (Ch. 2). Conserving sagebrush ecosystems is a major conservation challenge that will require an understanding not only of current trajectories and scales of habitat change due to natural and anthropogenic disturbances (Leu and Hanser 2011), but also the potential exacerbation of these trends from climate change (Wiens and Bachelet 2010, Miller et al. 2011).

Wyoming↗
USGS2001

Ecological studies of bison in the Greater Yellowstone Area: Development and implementation

Bison (Bison bison) of the Greater Yellowstone Area (GYA) are perhaps best known to the scientific community from the classic study of Meagher (1973) that reviewed their ecological status and management from the time of establishment of Yellowstone National Park in 1872 through the last National Park Service (NPS) removals of bison within the park in 1966. Since cessation of herd reductions in the park, bison numbers within Yellowstone increased (Dobson and Meagher 1996), as did range use (Meagher 1989b), including increased frequency and magnitude of movements beyond the park boundaries in winter (Meagher 1989a; Pac and Frey 1991; Cheville et al. 1998).

Wyoming↗
USGS2022

Flood regimes alter the role of landform and topographic constraint on functional diversity of floodplain forests

Understanding patterns of species coexistence is a fundamental challenge in ecology. The physical environment is believed to play an important role, influencing patterns of dispersal and biotic interactions across space and time. Floodplain forest species are presumed to interact strongly with their environment, as evidenced by pronounced spatial variation in forest composition associated with flood-driven abiotic constraints. Questions of how, and to what degree, fine-scale heterogeneity interacts with broad-scale hydrogeomorphology to influence patterns of functional composition remain unresolved. We examined how functional diversity (i.e. richness and range of functional traits) and ecological strategies (i.e. functional trait combinations) of floodplain forest communities varied across regional and local gradients of flooding in a northern temperate region of the United States of America. We found functional diversity of woody overstory species varied across hydrogeomorphic settings and that different settings altered associations between functional diversity and both the relative elevation above and proximity to rivers. Ecological strategies shifted over local gradients of relative elevation and distance to channel with different magnitudes and directions depending on the broader hydrogeomorphic context. We found evidence that interactions among flood regimes and landform position impose different levels of functional constraint. These results indicate patterns of community assembly are not easily discerned from landform type or position alone, but rather from filtering that operates and interacts with biota over multiple spatial scales. Our results imply that it is important to characterize flood dynamics in ways that can be clearly linked to ecological processes and that treatment of floodplain landforms as transferable units across river-valley segments is problematic, even within a single basin.

Ecography↗
USGS2011

Hierarchical spatial structure of stream fish colonization and extinction

Spatial variation in extinction and colonization is expected to influence community composition over time. In stream fish communities, local species richness (alpha diversity) and species turnover (beta diversity) are thought to be regulated by high extinction rates in headwater streams and high colonization rates in downstream areas. We evaluated the spatiotemporal structure of fish communities in streams originally surveyed by Burton and Odum 1945 (Ecology 26: 182-194) in Virginia, USA and explored the effects of species traits on extinction and colonization dynamics. We documented dramatic changes in fish community structure at both the site and stream scales. Of the 34 fish species observed, 20 (59%) were present in both time periods, but 11 (32%) colonized the study area and three (9%) were extirpated over time. Within streams, alpha diversity increased in two of three streams but beta diversity decreased dramatically in all streams due to fish community homogenization caused by colonization of common species and extirpation of rare species. Among streams, however, fish communities differentiated over time. Regression trees indicated that reproductive life-history traits such as spawning mound construction, associations with mound-building species, and high fecundity were important predictors of species persistence or colonization. Conversely, native fishes not associated with mound-building exhibited the highest rates of extirpation from streams. Our results demonstrate that stream fish colonization and extinction dynamics exhibit hierarchical spatial structure and suggest that mound-building fishes serve as keystone species for colonization of headwater streams.

Oikos↗
USGS2017

Reclamation after oil and gas development does not speed up succession or plant community recovery in big sagebrush ecosystems in Wyoming

Article for intended outlet: Restoration Ecology. Abstract: Reclamation is an application of treatment(s) following a disturbance to promote succession and accelerate the return of target conditions. Previous studies have framed reclamation in the context of succession by studying its effectiveness in re-establishing late-successional plant communities. Re-establishment of these plant communities is especially important and potentially challenging in regions such as drylands and shrub steppe ecosystems where succession proceeds slowly. Dryland shrub steppe ecosystems are frequently associated with areas rich in fossil-fuel energy sources, and as such the need for effective reclamation after disturbance from fossil-fuel-related energy development is great. Past research in this field has focused primarily on coal mines; few researchers have studied reclamation after oil and gas development. To address this research gap and to better understand the effect of reclamation on rates of succession in dryland shrub steppe ecosystems, we sampled oil and gas wellpads and adjacent undisturbed big sagebrush plant communities in Wyoming, USA and quantified the extent of recovery for major functional groups on reclaimed and unreclaimed (recovered via natural succession) wellpads relative to the undisturbed plant community. Reclamation increased the rate of recovery for all forb and grass species as a group and for perennial grasses, but did not affect other functional groups. Rather, analyses comparing recovery to environmental variables and time since wellpad abandonment showed that recovery of other groups were affected primarily by soil texture and time since wellpad abandonment. This is consistent with studies in other ecosystems where reclamation has been implemented, suggesting that reclamation may not help re-establish late-successional plant communities more quickly than they would re-establish naturally.

Wyoming↗
USGS2014

Linking environmental variability to population and community dynamics

Linking population and community responses to environmental variability lies at the heart of ecology, yet methodological approaches vary and existence of broad patterns spanning taxonomic groups remains unclear. We review the characteristics of environmental and biological variability. Classic approaches to link environmental variability to population and community variability are discussed as are the importance of biotic factors such as life history and community interactions. In addition to classic approaches, newer techniques such as information theory and artificial neural networks are reviewed. The establishment and expansion of observing networks will provide new long-term ecological time-series data, and with it, opportunities to incorporate environmental variability into research. This review can help guide future research in the field of ecological and environmental variability.

Book chapter↗
USGS2016

Detecting spatial regimes in ecosystems

Research on early warning indicators has generally focused on assessing temporal transitions with limited application of these methods to detecting spatial regimes. Traditional spatial boundary detection procedures that result in ecoregion maps are typically based on ecological potential (i.e. potential vegetation), and often fail to account for ongoing changes due to stressors such as land use change and climate change and their effects on plant and animal communities. We use Fisher information, an information theory-based method, on both terrestrial and aquatic animal data (U.S. Breeding Bird Survey and marine zooplankton) to identify ecological boundaries, and compare our results to traditional early warning indicators, conventional ecoregion maps and multivariate analyses such as nMDS and cluster analysis. We successfully detected spatial regimes and transitions in both terrestrial and aquatic systems using Fisher information. Furthermore, Fisher information provided explicit spatial information about community change that is absent from other multivariate approaches. Our results suggest that defining spatial regimes based on animal communities may better reflect ecological reality than do traditional ecoregion maps, especially in our current era of rapid and unpredictable ecological change.

Ecology Letters↗
USGS2001

The environment and human health; USGS science for solutions

Emerging infectious diseases, ground-water contamination, trace-metal poisoning...environmental threats to public health the world over require new solutions. Because of an increased awareness of the issues, greater cooperation among scientific and policy agencies, and powerful new tools and techniques to conduct research, there is new hope that complex ecological health problems can be solved. U.S. Geological Survey scientists are forming partnerships with experts in the public health and biomedical research communities to conduct rigorous scientific inquiries into the health effects of ecological processes.

Fact Sheet↗
USGS2017

Standardization and application of an index of community integrity for waterbirds in the Chesapeake Bay, USA

In recent decades, there has been increasing interest in the application of ecological indices to assess ecosystem condition in response to anthropogenic activities. An Index of Waterbird Community Integrity was previously developed for the Chesapeake Bay, USA. However, the scoring criteria were not defined well enough to generate scores for new species that were not observed in the original study. The goal of this study was to explicitly define the scoring criteria for the existing index and to develop index scores for all waterbirds of the Chesapeake Bay. The standardized index then was applied to a case study investigating the relationship between waterbird community integrity and shoreline development during late summer and late fall (2012–2014) using an alternative approach to survey methodology, which allowed for greater area coverage compared to the approach used in the original study. Index scores for both seasons were negatively related to percentage of developed shorelines. Providing these updated tools using the detailed scoring system will facilitate future application to new species or development of the index in other estuaries worldwide. This methodology allows for consistent cross-study comparisons and can be combined with other community integrity indices, allowing for more effective estuarine management.

Chesapeake Bay↗
USGS2017

A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of Geomyces destructans, the causal agent of bat white-nose syndrome

The recent emergence of white-nose syndrome (WNS), a fungal disease causing unprecedented mortality among hibernating bats of eastern North America, has revealed a knowledge gap regarding fungal communities associated with bats and their hibernacula. We used culture-based techniques to investigate the diversity of fungi in soil samples collected from 24 bat hibernacula in the eastern United States. Ribosomal RNA regions (internal transcribed spacer and partial intergenic spacer) were sequenced to preliminarily characterize isolates. Geomyces species were one of the most abundant and diverse groups cultured, representing approximately 33% of all isolates. Geomyces destructans was isolated from soil samples from three hibernacula in states where WNS is known to occur, and many of the other cultured Geomyces isolates likely represent undescribed taxa. Further characterization of the diversity of fungi that occur in hibernacula will both facilitate an improved understanding of the ecology of G. destructans within this complex fungal community and provide an opportunity to identify characteristics that differentiate G. destructans from non-pathogenic relatives.

Mycologia↗
USGS2023

Integrating community science and agency-collected monitoring data to expand monitoring capacity at large spatial scales

Monitoring species to better understand their status, ecology, and management needs is a major expense for agencies tasked with biodiversity conservation. Community science data have the potential to improve monitoring for minimal cost, given appropriate analytical frameworks. We describe a framework for integrating data from the eBird community science platform with agency-collected monitoring data using a multistate occupancy model. Our model accounts for the structural differences across datasets and allows for estimation of both occupancy and breeding probabilities. The framework was applied to Common Loons ( Gavia immer ) in Washington State. A total of 766 sites had observation effort, of which 713 sites had only eBird effort, 26 sites had only Washington Department of Fish and Wildlife (WDFW) effort, and 27 sites had both. We predicted that the probability of occupancy was only 0.07 (95% Bayesian credible interval, BCI = 0.02–0.51) at the 2324 sites in our sampling frame, though the probability that Common Loons were breeding at occupied sites was 0.95 (95% BCI = 0.71–1.00). We found that probability of occupancy was positively related to waterbody size (probability of a positive effect = 0.88) and negatively related to an index of human influence (probability of a negative effect = 0.94). We found that probability of breeding at occupied sites was positively related to tree canopy cover (0.86), negatively related to elevation (0.99), and negatively related to barren, scrub/shrub, and herbaceous land cover (0.98). We found that state agency biologists were 16 times more likely to detect breeding Common Loons at a site than were eBird users (0.94, 95% BCI = 0.78–0.99 for agency biologists vs. 0.08, 95% BCI = 0.06–0.10 for eBird users). However, the amount of effort expended by eBird users meant that they confirmed Common Loons at 94 sites while agency biologists confirmed them at just 24 sites, although evidence of reproduction was only contributed by agency biologists. Our results provide a better understanding of the distribution of Common Loons in Washington, while further demonstrating that community science data can be a valuable complement to agency-collected data, if appropriate frameworks are developed to integrate these data sources.

Ecosphere↗
USGS2019

Design and methods of the U.S. Geological Survey Northeast Stream Quality Assessment (NESQA), 2016

During 2016, as part of the National Water-Quality Assessment Project (NAWQA), the U.S. Geological Survey conducted the Northeast Stream Quality Assessment (NESQA) to investigate stream quality in the northeastern United States. The goal of the NESQA was to assess the health of wadeable streams in the region by characterizing multiple water-quality factors that are stressors to aquatic life and by evaluating the relation between these stressors and the condition of biological communities. Urbanization, agriculture, and human modifications to streamflow are anthropogenic changes that greatly affect water quality in the region; consequently, the study design primarily selected sites and targeted stressors associated with these activities. The NESQA built on a prior NAWQA study conducted in the region in 2014, the Atlantic Highlands flow-ecology study, which investigated the effects of anthropogenically modified flows on aquatic biological communities in primarily forested watersheds. Land-cover data for the NESQA were used to identify and select sites within the region that had watersheds ranging in levels of urban and agricultural development. A total of 95 sites were selected: 67 on streams in watersheds representing a range of urban land use, 13 on streams in watersheds with some degree of agricultural land use, and 15 on streams in predominantly forested watersheds with little development. Depending on land-cover characteristics, sites were sampled weekly for metal and organic contaminants, nutrients, and sediment for either a 9-week period that began the week of June 6, 2016, or a 4-week period that begin the week of July 11, 2016. Beginning August 1, 2016, and for about 2 weeks, an ecological survey was conducted at every site to assess stream habitat, and algal, benthic invertebrate, and fish communities. Additional samples collected during the ecological surveys were streambed sediment for chemical analysis and toxicity testing, and fish tissue for mercury analysis. This report describes the various study components and methods of the NESQA and describes a precursor effort for the Atlantic Highlands flow-ecology study. Details are presented for measurements of water quality, sediment chemistry, streamflow, and ecological surveys of stream biota and habitat, as well as processes of sample analysis, quality assurance and quality control, and data management.

Open-File Report↗
USGS2025

Habitat and predator influences on the spatial ecology of nine-banded armadillos

Mesopredator suppression has implications for community structure, biodiversity, and ecosystem function, but mesopredators with physical defenses may not avoid apex predators. We investigated nine-banded armadillos ( Dasypus novemcinctus ) in southwestern Oklahoma (USA) to evaluate if a species with physical defenses was influenced by a dominant predator, the coyote ( Canis latrans ). We sampled nine-banded armadillos and coyotes with motion-activated cameras. We used single-species and conditional two-species occupancy models to assess the influences of environmental factors and coyotes on nine-banded armadillo occurrence and site-use intensity (i.e., detection). We used camera-based detections to characterize the diel activity of each species and their overlap. Nine-banded armadillo occupancy was greater at sites closer to cover, with lower slopes, and further from water, whereas coyote space use was greater at higher elevations; both species were positively associated with recent burns. Nine-banded armadillo occurrence was not influenced by coyotes, but site-use intensity was suppressed by the presence of coyotes. Nine-banded armadillos (strictly nocturnal) and coyotes (predominantly nocturnal) had a high overlap in summer diel activity. Nine-banded armadillos are ecosystem engineers but are often considered a threat to species of concern and/or a nuisance. Thus, understanding the role of interspecific interactions on nine-banded armadillos has important implications for conservation and management.

Oklahoma↗