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Uncertainty analysis of index-velocity meters and discharge computations at the Chicago Sanitary and Ship Canal near Lemont, Illinois, water years 2006–16

Monitoring discharge in the Chicago Sanitary and Ship Canal is critical for the accounting done by the U.S. Army Corps of Engineers of the diversion of water from Lake Michigan to the Mississippi River Basin by the State of Illinois. The primary streamgage used for this discharge monitoring, the Chicago Sanitary and Ship Canal near Lemont, Illinois (U.S. Geological Survey station 05536890), is operated by the U.S. Geological Survey as an index-velocity station and at the time of this study (water years 2006–16) had two continuous velocity meters (an acoustic Doppler velocity meter and an acoustic velocity meter) and a water-level sensor, among other instruments. Discharge is computed at the streamgage using an index-velocity rating developed by linear regression of the velocity meter values fitted to discharges intermittently measured with an acoustic Doppler current profiler. In this study, the uncertainties of the velocity meters and stage sensors were estimated using a type B (judgment-based) approach, and measured discharge uncertainties were taken from those provided by a common acoustic Doppler current profiler data processing software tool, QRev. The velocity meter uncertainties, expressed as standard deviations, were estimated to be about 2.5 percent of velocity except near zero, where they exceeded that fraction, whereas for the acoustic Doppler current profiler uncertainties, when converted to mean channel velocity, 2.5 percent of velocity was determined to be a lower bound. The estimated velocity meter and measured discharge uncertainties were compared to index-velocity ratings developed from regression analyses of two types: (1) those that allow specification of measurement uncertainties and (2) ordinary least squares (OLS) regression, which does not. Based on the linearity of the index-velocity rating and the approximate agreement of the distributions of the fitting and prediction velocities, the assumptions required for unbiased prediction by OLS regression were determined to be approximately satisfied. From the regression residuals, it was determined that the estimated measurement uncertainties are too small, too similar between acoustic velocity meter and acoustic Doppler velocity meter velocities, and possibly too strongly dependent on velocity. Large, non-Gaussian OLS regression residuals also were observed. The uncertainty of annual mean discharge computed using the different regressions also was considered and was determined to be strongly dependent on the assumed measurement uncertainty. Because the assumptions required for OLS regression to give unbiased and variance-maintaining predictions were determined to be approximately satisfied, the results of discharge computation using the index-velocity rating based on OLS regression were deemed to be reliable. These results indicate about 0.8-percent uncertainty in the computed discharge as measured by the coefficient of variation at the annual time scale when using the acoustic Doppler velocity meter and 1.2-percent uncertainty with the acoustic velocity meter. It may be possible to improve the accuracy of the computed discharge and its uncertainty by further examining the measurement uncertainties and addressing differences in the distributions of the velocities used in fitting the index-velocity ratings and those used in prediction. Although the index-velocity ratings and computed discharges presented in this study are similar to those used in computing the published discharge at the study streamgage, the values presented in this report are not intended to replace the published discharge.

Illinois

Model Refinement and Simulation of Groundwater Flow in Clinton, Eaton, and Ingham Counties, Michigan

A groundwater-flow model that was constructed in 1996 of the Saginaw aquifer was refined to better represent the regional hydrologic system in the Tri-County region, which consists of Clinton, Eaton, and Ingham Counties, Michigan. With increasing demand for groundwater, the need to manage withdrawals from the Saginaw aquifer has become more important, and the 1996 model could not adequately address issues of water quality and quantity. An updated model was needed to better address potential effects of drought, locally high water demands, reduction of recharge by impervious surfaces, and issues affecting water quality, such as contaminant sources, on water resources and the selection of pumping rates and locations. The refinement of the groundwater-flow model allows simulations to address these issues of water quantity and quality and provides communities with a tool that will enable them to better plan for expansion and protection of their groundwater-supply systems. Model refinement included representation of the system under steady-state and transient conditions, adjustments to the estimated regional groundwater-recharge rates to account for both temporal and spatial differences, adjustments to the representation and hydraulic characteristics of the glacial deposits and Saginaw Formation, and updates to groundwater-withdrawal rates to reflect changes from the early 1900s to 2005. Simulations included steady-state conditions (in which stresses remained constant and changes in storage were not included) and transient conditions (in which stresses changed in annual and monthly time scales and changes in storage within the system were included). These simulations included investigation of the potential effects of reduced recharge due to impervious areas or to low-rainfall/drought conditions, delineation of contributing areas with recent pumping rates, and optimization of pumping subject to various quantity and quality constraints. Simulation results indicate potential declines in water levels in both the upper glacial aquifer and the upper sandstone bedrock aquifer under steady-state and transient conditions when recharge was reduced by 20 and 50 percent in urban areas. Transient simulations were done to investigate reduced recharge due to low rainfall and increased pumping to meet anticipated future demand with 24 months (2 years) of modified recharge or modified recharge and pumping rates. During these two simulation years, monthly recharge rates were reduced by about 30 percent, and monthly withdrawal rates for Lansing area production wells were increased by 15 percent. The reduction in the amount of water available to recharge the groundwater system affects the upper model layers representing the glacial aquifers more than the deeper bedrock layers. However, with a reduction in recharge and an increase in withdrawals from the bedrock aquifer, water levels in the bedrock layers are affected more than those in the glacial layers. Differences in water levels between simulations with reduced recharge and reduced recharge with increased pumping are greatest in the Lansing area and least away from pumping centers, as expected. Additionally, the increases in pumping rates had minimal effect on most simulated streamflows. Additional simulations included updating the estimated 10-year wellhead-contributing areas for selected Lansing-area wells under 2006-7 pumping conditions. Optimization of groundwater withdrawals with a water-resource management model was done to determine withdrawal rates while minimizing operational costs and to determine withdrawal locations to achieve additional capacity while meeting specified head constraints. In these optimization scenarios, the desired groundwater withdrawals are achieved by simulating managed wells (where pumping rates can be optimized) and unmanaged wells (where pumping rates are not optimized) and by using various combinations of existing and proposed well locations.

Scientific Investigations Report

Water resources of Parowan Valley, Iron County, Utah

Parowan Valley, in Iron County, Utah, covers about 160 square miles west of the Red Cliffs and includes the towns of Parowan, Paragonah, and Summit. The valley is a structural depression formed by northwest-trending faults and is, essentially, a closed surface-water basin although a small part of the valley at the southwestern end drains into the adjacent Cedar Valley. Groundwater occurs in and has been developed mainly from the unconsolidated basin-fill aquifer. Long-term downward trends in groundwater levels have been documented by the U.S. Geological Survey (USGS) since the mid-1950s. The water resources of Parowan Valley were assessed during 2012 to 2014 with an emphasis on refining the understanding of the groundwater and surface-water systems and updating the groundwater budget. Surface-water discharge of five perennial mountain streams that enter Parowan Valley was measured from 2013 to 2014. The total annual surface-water discharge of the five streams during 2013 to 2014 was about 18,000 acre-feet (acre-ft) compared to the average annual streamflow of about 22,000 acre-ft from USGS streamgages operated on the three largest of these streams from the 1940s to the 1980s. The largest stream, Parowan Creek, contributes more than 50 percent of the annual surface-water discharge to the valley, with smaller amounts contributed by Red, Summit, Little, and Cottonwood Creeks. Average annual recharge to the Parowan Valley groundwater system was estimated to be about 25,000 acre-ft from 1994 to 2013. Nearly all recharge occurs as direct infiltration of snowmelt and rainfall on the Markagunt Plateau east of the valley. Smaller amounts of recharge occur as infiltration of streamflow and unconsumed irrigation water near the east side of the valley on alluvial fans associated with mountain streams at the foot of the Red Cliffs. Subsurface flow from the mountain block to the east of the valley is a significant source of groundwater recharge to the basin-fill aquifer. Groundwater flows from the high-altitude recharge areas downward toward the basin-fill aquifer in Parowan Valley. Almost all groundwater discharge occurs as withdrawals from irrigation wells in the valley with a small amount of discharge from phreatophytic evapotranspiration. Subsurface groundwater discharge to Cedar Valley is likely minimal. Withdrawals from wells during 2013 were about 32,000 acre-ft. The estimated withdrawals from wells from 1994 to 2013 have ranged from 22,000 to 39,000 acre-ft per year. Declining water levels are an indication of the estimated average annual decrease in groundwater storage of 15,000 acre-ft from 1994 to 2013. Groundwater and surface-water samples were collected from 46 sites in Parowan Valley and Cedar Valley near the town of Enoch during June 2013. Groundwater samples from 34 wells were submitted for geochemical analysis. The total dissolved-solids concentration in water from these wells ranged from 142 to 886 milligrams per liter. Results of stable isotope analysis of oxygen and deuterium from groundwater and surface-water samples indicate that most of the groundwater in Parowan Valley and in Cedar Valley near Enoch is similar in isotopic composition to water from mountain streams, which reflects meteoric water recharged in high-altitude areas east of the valley. In addition, results of stable isotope analysis of a subset of samples from wells located near Little Salt Lake may indicate recharge of precipitation that occurred during cooler climatic conditions of the Pleistocene Epoch.

Utah

Quality-assurance results for routine water analysis in US Geological Survey laboratories, water year 1991

The US. Geological Survey operates a quality- assurance program based on the analyses of reference samples for the National Water Quality Laboratory in Arvada, Colorado, and the Quality of Water Service Unit in Ocala, Florida. Reference samples containing selected inorganic, nutrient, and low ionic-strength constituents are prepared and disguised as routine samples. The program goal is to determine precision and bias for as many analytical methods offered by the participating laboratories as possible. The samples typically are submitted at a rate of approximately 5 percent of the annual environmental sample load for each constituent. The samples are distributed to the laboratories throughout the year. Analytical data for these reference samples reflect the quality of environmental sample data produced by the laboratories because the samples are processed in the same manner for all steps from sample login through data release. The results are stored permanently in the National Water Data Storage and Retrieval System. During water year 1991, 86 analytical procedures were evaluated at the National Water Quality Laboratory and 37 analytical procedures were evaluated at the Quality of Water Service Unit. An overall evaluation of the inorganic (major ion and trace metal) constituent data for water year 1991 indicated analytical imprecision in the National Water Quality Laboratory for 5 of 67 analytical procedures: aluminum (whole-water recoverable, atomic emission spectrometric, direct-current plasma); calcium (atomic emission spectrometric, direct); fluoride (ion-exchange chromatographic); iron (whole-water recoverable, atomic absorption spectrometric, direct); and sulfate (ion-exchange chromatographic). The results for 11 of 67 analytical procedures had positive or negative bias during water year 1991. Analytical imprecision was indicated in the determination of two of the five National Water Quality Laboratory nutrient constituents: orthophosphate as phosphorus and phosphorus. A negative or positive bias condition was indicated in three of five nutrient constituents. There was acceptable precision and no indication of bias for the 14 low ionic-strength analytical procedures tested in the National Water Quality Laboratory program and for the 32 inorganic and 5 nutrient analytical procedures tested in the Quality of Water Service Unit during water year 1991.

Water-Resources Investigations Report

User's Guide, software for reduction and analysis of daily weather and surface-water data: Tools for time series analysis of precipitation, temperature, and streamflow data

The software described here is used to process and analyze daily weather and surface-water data. The programs are refinements of earlier versions that include minor corrections and routines to calculate frequencies above a threshold on an annual or seasonal basis. Earlier versions of this software were used successfully to analyze historical precipitation patterns of the Mojave Desert and the southern Colorado Plateau regions, ecosystem response to climate variation, and variation of sediment-runoff frequency related to climate (Hereford and others, 2003; 2004; in press; Griffiths and others, 2006). The main program described here (Day_Cli_Ann_v5.3) uses daily data to develop a time series of various statistics for a user specified accounting period such as a year or season. The statistics include averages and totals, but the emphasis is on the frequency of occurrence in days of relatively rare weather or runoff events. These statistics are indices of climate variation; for a discussion of climate indices, see the Climate Research Unit website of the University of East Anglia (http://www.cru.uea.ac.uk/projects/stardex/) and the Climate Change Indices web site (http://cccma.seos.uvic.ca/ETCCDMI/indices.html). Specifically, the indices computed with this software are the frequency of high intensity 24-hour rainfall, unusually warm temperature, and unusually high runoff. These rare, or extreme events, are those greater than the 90th percentile of precipitation, streamflow, or temperature computed for the period of record of weather or gaging stations. If they cluster in time over several decades, extreme events may produce detectable change in the physical landscape and ecosystem of a given region. Although the software has been tested on a variety of data, as with any software, the user should carefully evaluate the results with their data. The programs were designed for the range of precipitation, temperature, and streamflow measurements expected in the semiarid Southwest United States. The user is encouraged to review the examples provided with the software. The software is written in Fortran 90 with Fortran 95 extensions and was compiled with the Digital Visual Fortran compiler version 6.6. The executables run on Windows 2000 and XP, and they operate in a MS-DOS console window that has only very simple graphical options such as font size and color, background color, and size of the window. Error trapping was not written into the programs. Typically, when an error occurs, the console window closes without a message.

Open-File Report

Characterization of the hydrologic resources of San Miguel County, New Mexico, and identification of hydrologic data gaps, 2011

The U.S. Geological Survey (USGS), in cooperation with San Miguel County, New Mexico, conducted a study to assess publicly available information regarding the hydrologic resources of San Miguel County and to identify data gaps in that information and hydrologic information that could aid in the management of available water resources. The USGS operates four continuous annual streamgages in San Miguel County. Monthly discharge at these streamgages is generally bimodally distributed, with most runoff corresponding to spring runoff and to summer monsoonal rains. Data compiled since 1951 on the geology and groundwater resources of San Miguel County are generally consistent with the original characterization of depth and availability of groundwater resources and of source aquifers. Subsequent exploratory drilling identified deep available groundwater in some locations. Most current (2011) development of groundwater resources is in western San Miguel County, particularly in the vicinity of El Creston hogback, the hogback ridge just west of Las Vegas, where USGS groundwater-monitoring wells indicate that groundwater levels are declining. Regarding future studies to address identified data gaps, the ability to evaluate and quantify surface-water resources, both as runoff and as potential groundwater recharge, could be enhanced by expanding the network of streamgages and groundwater-monitoring wells throughout the county. A series of seepage surveys along the lengths of the rivers could help to determine locations of surface-water losses to and gains from the local groundwater system and could help to quantify the component of streamflow attributable to irrigation return flow; associated synoptic water-quality sampling could help to identify potential effects to water quality attributable to irrigation return flow. Effects of groundwater withdrawals on streamflow could be assessed by constructing monitoring wells along transects between production wells and stream reaches of interest to monitor decline or recovery of the water table, to quantify the timing and extent of water-table response, and to identify the spatial extent of capture zones. Assessment of groundwater potential could be aided by a county-wide distribution of water-level information and by a series of maps of groundwater potential, compiled for each individual aquifer, including saline aquifers, for which the potential for municipal use through desalination could be explored. A county-wide geographic information system hydrologic geodatabase could provide a comprehensive picture of water use in San Miguel County and could be used by San Miguel County as a decision-support tool for future management decisions.

New Mexico

Trends in streamflow and comparisons with instream flows in the lower Puyallup River basin, Washington

The Puyallup Tribe of Indians is interested in better understanding the water resources of the lower Puyallup River Basin in order to ensure sufficient water to meet Tribal and hatchery needs and make future water-resource decisions. The U.S. Geological Survey, in cooperation with the Puyallup Tribe, conducted a study to identify trends in streamflow in the lower Puyallup River Basin and to compare streamflows in the Puyallup River with regulatory minimum instream flows. Daily mean streamflow, monthly mean streamflow for October, and annual mean streamflow records from 1980 through 2001 for two gaging stations on the lower Puyallup River and one each on Clarks Creek and Swan Creek in the lower Puyallup River Basin were analyzed for temporal trends. Daily mean streamflow records were divided into data sets for the wet period (November through June) and the dry period (July through October) for analysis. Annual precipitation records from three National Weather Service stations and ground-water-level records from five wells in the lower Puyallup River Basin were analyzed to determine possible relations with streamflow. Daily mean streamflow, daily minimum streamflow, and unit-streamflow records for the Puyallup River for 1991 and 1992 were evaluated for the instream-flow analysis. Significant temporal trends were not identified in daily mean streamflow records from the Puyallup River, Clarks Creek, or Swan Creek for the period of analysis. Trend analysis of monthly mean streamflow records for October at two gaging stations on the Puyallup River also indicated no significant trends for the period of analysis. Temporal trends were not evident in precipitation data from weather stations in the basin. A trend of decreasing depth to ground water with time (1995 through 1997) was identified in one well (20N/04E-34G01). This well is drilled to about 550 feet below land surface, and variations in water levels at this depth likely do not affect streamflow in the Puyallup River. Data limitations prevented the evaluation of possible correlations between streamflow in the Puyallup River and water use and land use in the study basin. Daily mean, daily minimum, and unit-streamflow values were evaluated to determine how each measure of streamflow compared with instream-flow values. The occurrence of excursions (streamflow below the instream-flow value) was greatest when unit-streamflow values were compared with instream-flow values. The use of daily mean streamflow records may underestimate the occurrence of excursions under certain streamflow conditions. The unit-streamflow hydrograph for the Puyallup River at Puyallup exhibits a distinct, regular pattern. The hydrograph closely mimics the hydrograph at Lake Tapps Diversion, on the White River, a tributary of the Puyallup River, which is the outflow from a power plant, suggesting that the power-plant outflow affects streamflow in the Puyallup River. Streamflow entering Lake Tapps through the White River Canal does not exhibit the same pattern as the Puyallup River or diversion. The influence of the White River Canal on streamflow in the Puyallup River appears to be obscured by operation of the Lake Tapps Diversion.

Washington

Physics to fish—Understanding the factors that create and sustain native fish habitat in the San Francisco Estuary

Executive Summary The Bureau of Reclamation (Reclamation) operates the Central Valley Project (CVP), one of the nation’s largest water projects. Reclamation has an ongoing need to improve the scientific basis for adaptive management of the CVP and, by extension, joint operations with California’s State Water Project. The U.S. Geological Survey (USGS) works cooperatively with the Bureau of Reclamation to provide scientific support for the management of Reclamation’s CVP project. Major habitat restoration efforts and a new water-diversion point are planned to benefit delta smelt ( Hypomesus transpacificus ) and other species of concern while ensuring the reliability of water supply. In addition, various flow actions and management activities have been identified as possible methods to increase populations of delta smelt and salmonid ( Oncorhynchus spp.) runs of concern. The overarching goal of this cooperative project was to provide Reclamation with the scientific information needed to evaluate the efficacy of ongoing and future adaptive management actions and to improve the scientific basis for more flexible CVP operations that would achieve water-supply reliability and fish protection. The research and monitoring described in this report comprises the period 2015–19 and focuses on management issues related to native fish species of concern, especially delta smelt. Conserving the delta smelt population while providing a reliable water supply is a primary management and policy issue in California. Our approach for this cooperative project is based on the “physics to fish” concept, the idea that high-quality habitat is generated and sustained by the interaction between physical processes and the landscape. These interactions create a template for chemical and biological processes that can change across a variety of spatial and temporal scales. Following this concept, this project (hereafter referred to as “the physics to fish project”) included monitoring and studies of water flows, sediments, water quality, and invertebrate and fish dynamics across a range of spatial and temporal scales and in regions relevant to resource managers tasked with managing water supplies and ecosystem health in the San Francisco Estuary. The intent of this approach was to document the habitat conditions, important processes, and interactions among them that create high-quality habitat for native fishes so that the likely effects of future management actions (for example, habitat restoration) can be objectively assessed at the local (site-specific), regional (within subregions of the estuary), and landscape (across the entire estuary and beyond) scales. Hydrodynamically, the upper estuary (landward of Carquinez Strait) is characterized by a fixed volume of tidally exchanged water (for example, tidal prism) that interacts with the existing channel network and bathymetry to create regions with differing hydrodynamics. Our results indicate that careful study of construction or reoperation of existing infrastructure to perform management actions can help (1) improve the accuracy of hydrodynamic models; (2) further understanding of ecological effects; and (3) enhance abilities to predict ecological outcomes. At the local scale, we developed a new concept called the Lagrangian to Eulerian (LE) ratio that can be used as a tool for understanding the importance of various hydrodynamic processes in specific channels or channel networks and for forecasting transport dynamics. Channels with LE ratios<1 in a channel network or in a dead-end slough are hydrodynamically able to develop an exchange zone between two parcels of water that may have different chemical and physical properties. In a dead-end channel, there is a landward region with long residence time (no-exchange zone) and a seaward region with short residence time (high-exchange zone) that are well mixed with seaward waters. At the transition (exchange zone) between the high and no-exchange regions, a gradient will form in water-quality constituents that differ in concentration between the landward and seaward waters. Turbidity affects fish habitat and has declined through time in the San Francisco Estuary. Average turbidity across the Sacramento–San Joaquin Delta (hereafter referred to as “the Delta”) is dependent on annual hydrology. In dry years, the region around Cache Slough (known regionally as the “Cache Slough Complex”) in the northern Delta is generally more turbid than Suisun Bay and the lower Sacramento River. When the Yolo By-Pass (known regionally as “Yolo Bypass”), a large flood bypass that runs parallel to the Sacramento River in the northern Delta, is not flooding and river flows are lower, sediment is usually transported into the Cache Slough Complex because flood tides dominate ebb tides, resulting in transport of suspended sediment from seaward areas of the upper estuary into the Cache Slough Complex. These hydrodynamic conditions also favor the formation of turbidity maximums (TMs) in the Cache Slough Complex. The TMs are areas of higher suspended-sediment concentration, providing higher-turbidity habitat favored by some fishes, including delta smelt, and they can also concentrate other constituents, including phytoplankton and organic carbon that can be important in food webs. Pelagic primary production by phytoplankton is the basis for Delta food webs supporting pelagic fishes such as delta smelt; however, phytoplankton abundance in the Delta has declined during recent decades. We examined how nutrients, hydrodynamics, and other factors affect phytoplankton blooms. Based on our results, we developed three new concepts of phytoplankton bloom formation in the Delta, each associated with a distinct set of hydrologic conditions. First, productivity cascades highlighted how local processes can contribute to phytoplankton blooms observed at the regional scale. Second, we observed phytoplankton blooms in the upper San Francisco Estuary that were associated with transport out of Yolo By-Pass (transport blooms). Third, we also documented a series of phytoplankton blooms that were in the confluence area at the landward edge of Suisun Bay. The conditions leading to creation of confluence phytoplankton blooms are not yet understood, but the confluence region connects the Cache Slough Complex with Suisun Marsh. Therefore, blooms in this area have the potential to spread to large areas of the Delta. At the landscape scale, the distribution of the invasive clams ( Potamocorbula amurensis and Corbicula fluminea , hereafter referred to as “ Corbicula ”) is driven by salinity. At smaller spatial scales, the distribution of either species is sensitive to multiple factors affecting survival and reproduction, complicating efforts to predict distribution and abundance without considering local-scale conditions across the area of interest. In the Cache Slough Complex, the area landward of the exchange zone in regions with LE ratio<1 were characterized by low abundances of Corbicula probably because recruits from seaward areas are not transported past the exchange zone and because there are no landward tributaries with adult Corbicula to provide an upstream source of recruits. Corbicula biomass was highest near or downstream from the exchange zone consistent with Corbicula grazing on phytoplankton produced in the exchange zone or transported from the no-exchange zone. The severity of Corbicula grazing could be reduced by manipulating the hydrodynamic characteristics of waterways; however, the beneficial and harmful effects on the organisms meant to benefit from increased phytoplankton production, including zooplankton and fish species of concern, should be thoroughly examined before manipulating hydrodynamic characteristics. The distribution of fishes at the landscape scale is generally driven by the position of the salinity field in the estuary. The physics to fish project compared distributions of fishes at Ryer Island, a tidal wetland in Suisun Bay and a region of variable salinity, with fish distributions at the Cache Slough Complex, a freshwater region. At Ryer Island, there was an absence of freshwater invasive species and an abundance of native species, such as Sacramento splittail ( Pogonichthys macrolepidotus ), tule perch ( Hysterocarpus traskii ), and Sacramento pikeminnow ( Ptychocheilus grandis ). The native species were almost exclusively captured in wetland and nearshore shallow-water habitat regardless of water-quality conditions. In the Cache Slough Complex, our regional scale objective was to elucidate how hydrodynamic-physical habitat interactions drive fish-community structure. Our studies showed that dendritic channel systems were better able to support native species, while intertidal habitats supported those species best able to exploit the transient character of the habitat. Habitats upstream from the exchange zone were especially important in supporting high numbers of native fishes relative to within or downstream from the exchange zone. Many of the native species were associated with tidal marsh in the no-exchange zone. More pelagic-oriented, mobile species, such as Striped Bass ( Morone saxatilis ), threadfin shad ( Dorosoma petenense ), and Sacramento pikeminnow, were more affected by water-quality conditions, such as turbidity. The physics to fish concept developed in this project provides a framework for designing individual projects and for considering the cumulative effects of multiple projects in a region, using the LE ratio as a guiding metric. The physics to fish concept may also provide a suitable framework for coordinating management actions. Tidal wetlands can function in several ways in the hydrodynamic framework. Relatively small tidal wetlands with short channel networks and with LE ratios>1 are not able to maintain a landward no-exchange zone or an exchange zone. This likely means that any contributions to pelagic food webs would be limited to resources derived from wetland vegetation, which can include dissolved and particulate organic matter (detritus) and populations of consumers that can increase in abundance based on those resources. The fate of the contributed production from these channels depends on the characteristics of the receiving waters seaward of the tidal wetland. If these channels join a large system such as Suisun Bay, then any contribution is likely to be rapidly dispersed in the larger volume; however, the channel junction might provide a focal point for consumers, such as fishes, to congregate and feed on material leaving the wetland on ebb tides before it is dispersed in the larger volume. Fishes might also access these resources by entering the wetland. The physics to fish project has established a foundation and several new concepts for understanding how habitat restoration can benefit native fish populations at the local and regional levels. Many of the ideas regarding habitat restoration and channel modifications outlined in this report could help guide management actions that could improve conditions for native fishes at little or no water cost beyond water already dedicated to other management actions. A complete list of products originating from this work is provided in appendix 1.

California

Evaluation of the streamflow-gaging network of Alaska in providing regional streamflow information

In 1906, the U.S. Geological Survey (USGS) began operating a network of streamflow-gaging stations in Alaska. The primary purpose of the streamflow- gaging network has been to provide peak flow, average flow, and low-flow characteristics to a variety of users. In 1993, the USGS began a study to evaluate the current network of 78 stations. The objectives of this study were to determine the adequacy of the existing network in predicting selected regional flow characteristics and to determine if providing additional streamflow-gaging stations could improve the network's ability to predict these characteristics. Alaska was divided into six distinct hydrologic regions: Arctic, Northwest, Southcentral, Southeast, Southwest, and Yukon. For each region, historical and current streamflow data were compiled. In Arctic, Northwest, and Southwest Alaska, insufficient data were available to develop regional regression equations. In these areas, proposed locations of streamflow-gaging stations were selected by using clustering techniques to define similar areas within a region and by spatial visual analysis using the precipitation, physiographic, and hydrologic unit maps of Alaska. Sufficient data existed in Southcentral and Southeast Alaska to use generalized least squares (GLS) procedures to develop regional regression equations to estimate the 50-year peak flow, annual average flow, and a low-flow statistic. GLS procedures were also used for Yukon Alaska but the results should be used with caution because the data do not have an adequate spatial distribution. Network analysis procedures were used for the Southcentral, Southeast, and Yukon regions. Network analysis indicates the reduction in the sampling error of the regional regression equation that can be obtained given different scenarios. For Alaska, a 10-year planning period was used. One scenario showed the results of continuing the current network with no additional gaging stations and another scenario showed the results of adding gaging stations to the network. With the exception of the annual average discharge equation for Southeast Alaska, by adding gaging stations in all three regions, the sampling error was reduced to a greater extent than by not adding gaging stations. The proposed streamflow-gaging network for Alaska consists of 308 gaging stations, of which 32 are designated as index stations. If the proposed network can not be implemented in its entirety, then a lesser cost alternative would be to establish the index stations and to implement the network for a particular region.

Water-Resources Investigations Report

Cobalt

Cobalt is a silvery gray metal that has diverse uses based on certain key properties, including ferromagnetism, hardness and wear-resistance when alloyed with other metals, low thermal and electrical conductivity, high melting point, multiple valences, and production of intense blue colors when combined with silica. Cobalt is used mostly in cathodes in rechargeable batteries and in superalloys for turbine engines in jet aircraft. Annual global cobalt consumption was approximately 75,000 metric tons in 2011; China, Japan, and the United States (in order of consumption amount) were the top three cobalt-consuming countries. In 2011, approximately 109,000 metric tons of recoverable cobalt was produced in ores, concentrates, and intermediate products from cobalt, copper, nickel, platinum-group-element (PGE), and zinc operations. The Democratic Republic of the Congo (Congo [Kinshasa]) was the principal source of mined cobalt globally (55 percent). The United States produced a negligible amount of byproduct cobalt as an intermediate product from a PGE mining and refining operation in southeastern Montana; no U.S. production was from mines in which cobalt was the principal commodity. China was the leading refiner of cobalt, and much of its production came from cobalt ores, concentrates, and partially refined materials imported from Congo (Kinshasa). The mineralogy of cobalt deposits is diverse and includes both primary (hypogene) and secondary (supergene) phases. Principal terrestrial (land-based) deposit types, which represent most of world’s cobalt mine production, include primary magmatic Ni-Cu(-Co-PGE) sulfides, primary and secondary stratiform sediment-hosted Cu-Co sulfides and oxides, and secondary Ni-Co laterites. Seven additional terrestrial deposit types are described in this chapter. The total terrestrial cobalt resource (reserves plus other resources) plus past production, where available, is calculated to be 25.5 million metric tons. Additional resources of cobalt are known to occur on the modern sea floor in aerially extensive deposits of Fe-Mn(-Ni-Cu-Co-Mo) nodules and Fe-Mn(-Co-Mo-rare-earth-element) crusts. Legal, economic, and technological barriers have prevented exploitation of these cobalt resources, which lie at water depths of as great as 6,000 meters, although advances in technology may soon allow production of these resources to be economically viable. Environmental issues related to cobalt mining concern mainly the elevated cobalt contents in soils and waters. Although at low levels cobalt is essential to human health (it is the central atom in the critical nutrient vitamin B12), overexposure to high levels of cobalt may cause lung and heart dysfunction, as well as dermatitis. The ecological impacts of cobalt vary widely and can be severe for some species of fish and plants, depending on various environmental factors.

Professional Paper

The condition of browse plants at the Theodore Roosevelt Memorial Ranch (TRMR)

The Theodore Roosevelt Memorial Ranch (TRM), owned and operated by the Boone and Crockett Club, spans 6,000 acres along the Rocky Mountain East Front. The ranch is located west of Dupuyer, Montana, on the forks of Dupuyer and Scoffin Creeks. Each fall, mule deer migrate from the Bob Marshall Wilderness and adjacent Lewis and Clark and Flathead National Forests to the ranch and adjacent private lands. Winter counts and classifications have been conducted since the mid-1970&rsquo;s by Montana Fish, Wildlife & Parks personnel. In addition to mule deer, domestic livestock, whitetailed deer and elk compete for space and forage on the winter range. Browse species such as chokecherry, aspen, serviceberry, red osier dogwood, horizontal juniper, and willows are utilized by all ungulates in the area. The Dupuyer Creek winter range shows evidence of severe over-browsing on these species. Coincidentally, mule deer and elk populations have historically been higher here than other areas along the mountain front. Over the past 22 years, mule deer densities have been calculated at over 75 deer per square mile over the entire winter range and up to 200 per square mile on the TRM itself. Winter ranges are occupied from mid-November through May. Winter counts are conducted in January and again in March to assess fawn and adult survival. An average of 2,100 mule deer are surveyed annually, with fawn/doe ratios of 71, fawn/adult ratios of 54, and buck/does ratios of 33 (ratios are expressed as animals per 100 does or adults). Mule deer migrate back to higher elevation summer ranges in mid- to late-May, traveling as far north as Glacier National Park and westward to the South Fork of the Flathead River. Less than 15 percent of the wintering population remains along the mountain front during the summer. Movements back to winter range may occur in early October, with the majority of animals present by November 15th. As background for a more comprehensive study, we collected data in September and October 1999 from which to assess the impact of ungulates on browse plants. There were three general objectives: 1) determine the current level of browsing intensity, 2) reconstruct histories of browsing, and 3) determine the effect of browsing on rate of stem growth.

Montana

Simulation of groundwater flow and brine discharge to the Dolores River in the Paradox Valley, Montrose County, Colorado

Salinity, or total dissolved solids (TDS), of the Colorado River affects agricultural, municipal, and industrial water users and is an important concern in the Western United States. In the Paradox Valley of southwestern Colorado, natural discharge of sodium-chloride brine to the Dolores River from the underlying core of a salt-valley anticline accounts for about 6 percent of the salinity load to the Colorado River. Formation of the Paradox Valley began during the Miocene, and subsequent erosion exposed the Pennsylvania Paradox Formation in the core of the anticline where a cap rock, collapse features, breccia, and sodium-chloride saturated brine developed at the top of the exposed salt diapir. The discharge of brine to the Dolores River is affected by these dissolution features, along with seasonal hydrologic conditions and density-dependent flow between older dense brine and the younger fresh groundwater in the overlying alluvial aquifer. To reduce TDS concentrations in the Dolores River through the Paradox Valley, the Bureau of Reclamation has pumped brine from a series of shallow wells adjacent to the river since July 1996. The pumped brine is collected and piped to a deep disposal well where it is injected into the Mississippian Leadville Limestone at a depth of about 4,570-meters below land surface. The pumping and injection operation is collectively known as the Paradox Valley Unit (PVU), and by 2015, the PVU had substantially reduced TDS concentrations in the Dolores River by about 70 percent. Since 2019, injection-pressure limits and related seismic activity have constrained deep-well injection and thus brine pumping at the PVU. In cooperation with the Bureau of Reclamation, the U.S. Geological Survey developed a MODFLOW-6 three-dimensional, variable-density groundwater flow and TDS transport model of the Paradox Valley to evaluate the effects of PVU pumping operations on brine discharge to the Dolores River and to guide additional research. The finite-difference model grid consists of 76 rows and 48 columns oriented from northwest to southeast in alignment with valley topography and groundwater-flow directions in the near-surface freshwater alluvial aquifer. A 7-layer hydrogeologic framework was developed from existing datasets to represent the alluvial aquifer, cap rock, collapse breccia, and groundwater flow and TDS transport from the underlying Paradox Formation salt to the Dolores River. The model represents a 33-year transient calibration period from 1987 through 2020 that includes pre-PVU conditions from 1987 through June 1996 and post-PVU conditions from July 1996 through 2020. A 1,000-year simulation of groundwater flow and coupled TDS transport computed the initial conditions for the subsequent 33-year transient simulation. Observations of precipitation, streamflow, evaporation, agricultural land use, and PVU brine pumping rates were used to specify appropriate boundary conditions to the model representing time-varying recharge, tributary streamflow, groundwater underflow, evapotranspiration (ET), and PVU pumping. Values for average monthly streamflow and TDS concentration at the upstream streamgage, the Dolores River at Bedrock (USGS streamgage 09169500), were specified as model input where the Dolores River enters Paradox Valley. Observed pumping from the PVU, water levels and TDS concentrations in groundwater, and streamflow and estimated TDS concentrations at the downstream streamgage, the Dolores River near Bedrock (USGS streamgage 09171100), were calibration targets that constrained the manual calibration of model parameters representing aquifer hydraulic conductivity, storage, streambed conductance, recharge, and (ET). Two primary model-calibration targets were the match between observed and simulated TDS mass flux from PVU pumping wells and the match between estimated and simulated TDS mass flux to the Dolores River. The simulated TDS mass withdrawn by pumping wells is calculated by the model as the product of the assigned pumping rate and simulated groundwater TDS concentrations. Because actual pumping rates were assigned as simulated values, the total simulated PVU pumping for the 33-year calibration is within 0.5 percent of the observed values. However, simulated concentrations and thus mass flux of TDS withdrawn by the PVU pumping wells were consistently about 26 percent less than observed values for all the simulated time periods (33-year simulation, pre-PVU, and post-PVU). The representation of brine inflow was explored through additional modeling to evaluate the effect of the simulated brine source on groundwater TDS concentrations. Results indicated that a saturated-salt constant-flux brine source best replicated the magnitude and transient pattern observed for TDS mass flux from PVU pumping wells. The simulated TDS mass flux to the Dolores River is compared to estimates based on observed streamflow and specific conductance (SC) data for the downstream streamgage. The calibrated model provided a close fit of simulated to measured streamflow at the downstream streamgage, and the calibrated model fit to estimated TDS concentrations at the downstream streamgage was reasonable. The greatest differences between simulated and estimated values occurred during drought periods from June 2000 to March 2003, May 2012 to June 2013, and October 2013 to October 2014, when simulated TDS concentrations in the river were greater than estimated concentrations. In general, simulated TDS mass flux to the river for the pre-PVU period is in good agreement with estimated values (2-percent difference), but the model overestimated TDS mass flux to the river by about 41 percent during the post-PVU period. The model uncertainty with respect to TDS mass flux to the river indicates other processes or model parameters not well represented by the model are affecting the system, especially during drought. During model calibration, the most sensitive parameters were identified as vertical hydraulic conductivity of the alluvial aquifer, conductance of the Dolores River streambed, ET extinction depth and rate, and recharge rate. Five 5-year scenarios of conditions for 2021–25 were simulated to assist evaluation of alternative strategies to manage the discharge of brine into the Dolores River. The first scenario simulates no PVU pumping and serves as a base case for comparison to the other scenarios. Two scenarios simulate the effects of varying withdrawal timing at an annual rate about one-third less than during 2010 through 2018. During high-flow spring snowmelt runoff periods when brine discharge is naturally minimized, PVU pumping does not substantially affect salinity in the Dolores River, and comparison of these two scenarios indicates that scheduling brine withdrawals during times of low river stage is nearly as effective at reducing TDS mass flux to the river as pumping brine year-round. Cessation of pumping during periods of high river stage may be advantageous for system maintenance, brine injection, and seismic-risk reduction. The fourth scenario tested the effect of reducing irrigation-return flow on brine discharge and predicted a slight reduction of TDS mass flux to the Dolores River, but not as great a reduction as that of using the PVU to remove brine. The fifth scenario simulated 5 years of drought conditions without PVU pumping and indicates brine discharge during drought about 15 percent greater than during average hydrologic conditions. Results from scenario 5 are consistent with the calibrated model results and indicate that aquifer properties and ET processes and parameters may be affecting simulation results during drought. The Paradox Valley groundwater model provides a reasonable overall match to observed conditions in the Dolores River. The model is useful for evaluating relative differences between brine management scenarios to inform PVU operational decisions and to identify gaps in data and process understanding. Representation of the brine source, hydraulic-conductivity parameters, and recharge and ET processes were identified as potential areas for additional field and modeling research. Additional research in the Paradox Valley might include field-data collection that provides additional information on the hydrogeologic framework, groundwater levels, groundwater TDS concentrations, stream characteristics, and aquifer properties. Additional modeling efforts could benefit from applying advanced tools for model development, calibration, and visualization including parameter-estimation and sensitivity analysis. Statistical evaluation of known model uncertainties such as hydraulic conductivity, streambed conductance, representations of the brine source, recharge, and ET could improve the match between simulated and estimated TDS mass flux from PVU pumping wells and to the Dolores River further informing model predictions and system understanding for the Paradox Valley.

Colorado

Managed aquifer recharge in snow-fed river basins: What, why and how?

What does climate change mean for snow-fed river basins? Climate change poses unique challenges in snow-fed river basins across the western United States because the majority of water supply originates as snow (Dettinger, Udall, & Georgakakos, 2015). In the Sierra Nevada, recent observations include changes in snow accumulation and snowmelt, and shifts in peak streamflow timing (Barnhart et al., 2016; Hatchett et al., 2017; Kim & Jain, 2010; McCabe, Wolock, & Valentin, 2018; Mote, Li, Lettenmaier, Xiao, & Engel, 2018). Such changes upstream alter surface water deliveries downstream, as well as groundwater recharge utilized as both primary and supplemental water supply (Godsey et al., 2014; Harpold, 2016; Jasechko et al., 2014). basin where snowmelt runoff produces substantial water supply to meet diverse agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the Carson Valley, a rich agricultural region (40,000 acres) that grows primarily alfalfa hay. The majority of irrigators rely on surface water delivered through a network of earthen ditches constructed in the mid-19th and early 20th centuries. Flow through these earthen networks and the practice of flood irrigation contribute significantly to groundwater recharge. Because no upstream surface water reservoirs exist, snowpack that accumulates through winter and melts slowly through spring has acted as a “natural” reservoir, providing ample supply through the summer irrigati agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the season. Some irrigators have permitted access to supplemental groundwater that is useful during periods of drought for augmenting shortfalls in surface water delivery. Groundwater is the primary source of municipal and industrial water supply for surrounding communities (e.g., Carson City, Minden, Gardnerville, Dayton). Across the basin, water use is highly regulated through federal, tribal, state and local water-sharing agreements based on prior appropriation doctrine (Wilds, 2014). Carson River surface water allocations follow the Alpine Decree, initiated by the United States Department of Interior in 1925 and signed into law in 1980, following 55 years of litigation, to adjudicate surface water rights to individual parties (NDWP, 1999). The Alpine Decree acknowledges return flows to lower river segments, and thus each river segment is distributed autonomously. This means that the most junior water right on an upper segment can be fulfilled before considering the most senior water right on a lower segment. Ultimately, the ruling is at the discretion of the Federal Water Master to satisfy the needs of each water right Downstream of Carson Valley, surface water flows are stored in Lahontan Reservoir, the nation’s first desert reclamation project (est. 1906), where releases are managed to meet the Newland’s Project irrigation water demand and for environmental use on the Stillwater National Wildlife Refuge. Flows from the Carson River are supplemented through diversions from the Truckee River via the Truckee Canal, resulting in a trans-basin water supply system. How is the Water for the Seasons research program informing snow-fed river basin communities? In the Truckee-Carson River System, researchers and local water managers are working together to assess climate change impacts to water supply and explore how model simulations can produce useful information to support local climate adaptation. Twelve key water managers represent agricultural, environmental, urban and regulatory water-use communities, and bring to the table diverse input and perspectives on how to adapt to climate change. Hydrologists use this input to craft scenarios and simulations that meet the information needs of local water managers. Biannual workshops provide an opportunity for information exchange, where researchers and key water managers generate new knowledge of river system function. That is, researchers share results of models that examine the physical potential, and managers validate the on-the-ground potential, further informing the research process. Coincident to this research program, the region faced a prolonged drought period (2012-2016) with historically low snowpack, followed by a historic wet year (2017) that brought winter and spring flooding as a result of atmospheric river storm events (Sterle et al., 2019). For the Carson River, an important observation made by managers was that peak streamflow that had traditionally coincided with peak irrigation demands, had shifted to earlier in the spring, with summer baseflow also decreasing (Sterle & Singletary, 2017). Managers shared with researchers concerns over potential future impacts that changing snowpack will have on surface water deliveries and reliance on groundwater, as the region’s population and economy continue to grow. During workshops that occurred over this period, local water managers and researchers discussed ways to evaluate water distribution and use that honors the existing legal framework and accounts for changing snowpack regimes (amount, rain versus snow, timing). In response to managers growing interest, researchers introduced the concept of managed aquifer recharge as one potential strategy to adapt and enhance regional water sustainability. What is managed aquifer recharge? Simply stated, managed aquifer recharge is the intentional recharge of structures to spread water over agricultural lands, allowing water to naturally infiltrate into the groundwater system (Bouwer, 1999; Niswonger et al., 2017). The latter may occur during the irrigation season by applying excess water, or during the nonirrigation season when evapotranspiration losses are low. Figure 2 illustrates managed aquifer recharge in a snow-fed river basin, where streamflow generated from snowmelt runoff is diverted to agricultural lands to recharge the aquifer. Such flood irrigation practices, including water delivery through earthen ditch networks, provide incidental but significant aquifer recharge through seepage and deep drainage beneath fields (Niswonger, Allander, & Jeton, 2014). The effects of managed aquifer recharge can vary depending on the location and intensity of practice. For example, implementing managed aquifer recharge water into the groundwater system (Dillon, 2009). This differs from the incidental recharge that may occur as part of normal irrigation practices. Managed recharge may occur by injection into the aquifer through existingwells, or by using existing conveyance adjacent to/along the river’s floodplain has the potential to enhance late-season instream flows due to increased return flows, resulting in greater downstream deliveries as well as improving ecological conditions (Niswonger et al., 2017). Implementing managed aquifer recharge away from the river’s floodplain has the potential to enhance groundwater supply which is increasingly relied upon during surface water shortage (Green et al., 2011), by storing water in available aquifer space in the deep aquifer. At the basin scale, managed aquifer recharge may lead to regional groundwater sustainability. Is the Carson River Basin a candidate for managed aquifer recharge? The physical limitations to implementing managed aquifer recharge in the Carson River Basin hinges on three key factors. The first factor relates to the physical connectivity between rivers and streams, and the irrigation delivery network of canals and ditches that divert water to agricultural lands (Niswonger et al., 2017). In the Carson River Basin the mechanisms for getting water to fields is already in place. Thus, intentionally routing high flows that occur in wet years through this system during the nonirrigation season would mimic what occurs naturally during the irrigation season. The second factor relates to the occurrence of atmospheric river storm events that deliver large amounts of precipitation to the region, much greater than average (Dettinger et al., 2015). With increased frequency and intensity projected under a warmer climate, such events have the potential to produce excess water over short periods of time that could be stored through mechanisms such as managed aquifer recharge (Niswonger et al., 2017). The third factor relates to the change in snowpack accumulation and shifts in snowmelt timing observed elsewhere in the Sierra Nevada (e.g., Godsey et al., 2014; Mote et al., 2018). Having a mechanism in place to maximize use of earlier snowmelt and shifts in streamflow timing could be advantageous and enhance regional groundwater sustainability. As part of the Water for the Seasons study, a hypothetical scenario was developed to determine the feasibility of managed aquifer recharge in the Carson River Basin, assuming no legal constraints. During “wet” or above-average water years, irrigators in the Upper Carson Valley would divert high flows and spread water over agricultural lands during the nonirrigation season. Assuming flows are abundant and “early,” diversions would begin prior to the growing season, when water would otherwise flow downstream to the Lahontan Reservoir. During “dry” years or drought periods, when surface water availability is less, irrigators in the Upper Carson Valley could augment surface water shortages with groundwater, allowing available surface water flows to flow downstream. Researchers hypothesize the amount of water has the potential to boost baseflow to support environmental instream flows, for example. What concerns have local water managers expressed? The hypothetical managed aquifer recharge scenario was presented to water managers in a workshop setting. Presentations included an overview of the hydrologic and operations modeling tools used to evaluate managed aquifer recharge by simulating the timing and distribution of water in the upper watershed. Specifically, in the Upper Carson Valley, a hydrologic model (GSFLOW) simulates streamflow driven by snowmelt, and surface and groundwater interactions, while a river basin operations model (MODSIM) allocates water according to the prior appropriation doctrine in the basin (see Figure 1) (Morway, Niswonger, & Triana, 2016; Niswonger et al., 2017). Integrating these two modeling tools advances the evaluation of climate impacts on water availability in agricultural communities and the resulting impacts of alternative management strategies (Morway et al., 2016). When asked about the viability of managed aquifer recharge, the perspectives of 11 managers varied (Figure 3). Regardless of rating, all managers questioned, “How would thisreally work?” Several managers questioned whether models could simulate the connectivity between surface and groundwater to accurately quantify changes to instream flow. Others raised concerns that managed aquifer recharge violates the Alpine Decree and Nevada Water Law. Still others requested researchers consider alternatives that could work within the confines of current (2019) water law. Managers posed specific questions that should be considered when evaluating the potential for managed aquifer recharge. For example: What triggers implementation of managed aquifer recharge?How “high” or “low” must annual flows be to initiate managed aquifer recharge? When in the water year is this determined? Where exactly in the Carson Valley is managed aquiferre charge possible? For example, what areas away from the floodplain could ensure long-term storage? Can model simulations quantify potential benefits and consequences system-wide?Would this information support decision-making, such as permitting of additional supplemental groundwater rights? How are researchers going to address managers’ research questions? Managers’ perspectives help to validate the on-the-ground potential of particular strategies and further refine alternative management scenarios. For example, understanding that managers are concerned with oversaturated fields helps researchers to define conditions in the model, such as what defines a wet versus “too” wet type of year and where to focus irrigation for managed aquifer recharge. Incorporating these nuances provides more accurate quantification of the potential benefits and consequences for users across the basin. Modeling is underway to simulate managed aquifer recharge scenarios and explore basin-wide implications. Researchers and local water managers will convene to collaboratively review results and further assess whether this or other strategies could work under the confines of existing water law. Subsequent fact sheets will present these findings.

Nevada

Managing effects of drought and other water resource challenges in Alaska and the Pacific Northwest

This is a Cooperator Report. As such, there is no specific abstract. The physical, ecological, and social environments of Alaska and the Pacific Northwest (PNW) region of the United States are extremely diverse. Alaska ranges from the Arctic Ocean and the very cold, dry environments of the North Slope to the cool and very rainy coastal North Pacific region of Southeast Alaska. Most precipitation falls as snow at higher elevations. In Arctic Alaska, average annual temperature is 14.6 F, and average annual precipitation is 11 inches. By contrast, in Southeast Alaska, average annual temperature is 35.8 F, and annual average precipitation is 143 inches. The PNW, defined here as Idaho, Oregon, and Washington, ranges from the Pacific Coast (annual precipitation of 200 inches) to interior semi-arid regions (annual precipitation of 8 inches). Precipitation patterns in the PNW are strongly governed by orographic phenomena, with high, persistent snowpack in the higher mountains (e.g., record annual snowfall of 1,130 in at Mount Baker, Washington in 1999-2000). Ecosystems in the PNW include productive temperate coniferous forests near the Pacific coast and along the (wet) west slope of the Cascade Range, less productive mixed-conifer forest along the (dry) east slope of the Cascades and in interior mountain ranges, and sagebrush-steppe and shrublands at lower elevations in much of the interior and mountain valleys. Large rivers and thousands of smaller tributaries form an extensive network of riparian, wetland, and estuarine systems that provide both critical hydrologic function and biological diversity at broad and fine spatial scales. Although Alaska and the Pacific Northwest differ in important physical, ecological, and social features, the importance of natural resources is evident in both regions. Water is important for wildlife and people. Water provides critical habitat for salmon, which are culturally and economically valuable species. Timber production has declined in recent decades. Recreation has emerged as a major revenue source.

Alaska, Oregon, Washington

Effects of wastewater effluent discharge and treatment facility upgrades on environmental and biological conditions of the upper Blue River, Johnson County, Kansas and Jackson County, Missouri, January 2003 through March 2009

The Johnson County Blue River Main Wastewater Treatment Facility discharges into the upper Blue River near the border between Johnson County, Kansas and Jackson County, Missouri. During 2005 through 2007 the wastewater treatment facility underwent upgrades to increase capacity and include biological nutrient removal. The effects of wastewater effluent on environmental and biological conditions of the upper Blue River were assessed by comparing an upstream site to two sites located downstream from the wastewater treatment facility. Environmental conditions were evaluated using previously and newly collected discrete and continuous data, and were compared with an assessment of biological community composition and ecosystem function along the upstream-downstream gradient. This evaluation is useful for understanding the potential effects of wastewater effluent on water quality, biological community structure, and ecosystem function. In addition, this information can be used to help achieve National Pollution Discharge Elimination System (NPDES) wastewater effluent permit requirements after additional studies are conducted. The effects of wastewater effluent on the water-quality conditions of the upper Blue River were most evident during below-normal and normal streamflows (about 75 percent of the time), when wastewater effluent contributed more than 20 percent to total streamflow. The largest difference in water-quality conditions between the upstream and downstream sites was in nutrient concentrations. Total and inorganic nutrient concentrations at the downstream sites during below-normal and normal streamflows were 4 to 15 times larger than at the upstream site, even after upgrades to the wastewater treatment facility were completed. However, total nitrogen concentrations decreased in wastewater effluent and at the downstream site following wastewater treatment facility upgrades. Similar decreases in total phosphorus were not observed, likely because the biological phosphorus removal process was not optimized until after the study was completed. Total nitrogen and phosphorus from the wastewater treatment facility contributed a relatively small percentage (14 to 15 percent) to the annual nutrient load in the upper Blue River, but contributed substantially (as much as 75 percent) to monthly loads during seasonal low-flows in winter and summer. During 2007 and 2008, annual discharge from the wastewater treatment facility was about one-half maximum capacity, and estimated potential maximum annual loads were 1.6 to 2.4 times greater than annual loads before capacity upgrades. Even when target nutrient concentrations are met, annual nutrient loads will increase when the wastewater treatment facility is operated at full capacity. Regardless of changes in annual nutrient loads, the reduction of nutrient concentrations in the Blue River Main wastewater effluent will help prevent further degradation of the upper Blue River. The Blue River Main Wastewater Treatment Facility wastewater effluent caused changes in concentrations of several water-quality constituents that may affect biological community structure and function including larger concentrations of bioavailable nutrients (nitrate and orthophosphorus) and smaller turbidities. Streambed-sediment conditions were similar along the upstream-downstream gradient and measured constituents did not exceed probable effect concentrations. Habitat conditions declined along the upstream-downstream gradient, largely because of decreased canopy cover and riparian buffer width and increased riffle-substrate fouling. Algal biomass, primary production, and the abundance of nutrient-tolerant diatoms substantially increased downstream from the wastewater treatment facility. Likewise, the abundance of intolerant macroinvertebrate taxa and Kansas Department of Health and Environment aquatic-life-support scores, derived from macroinvertebrate data, significantly decreased downstream from the wastewater treatment facility. Ecosystem functional health, evaluated using a preliminary framework based on primary production and community respiration, downstream from the wastewater treatment facility was mildly impaired relative to the upstream site during summer 2008 but not during other times of the year. Upgrades to the Blue River Main Wastewater Treatment Facility improved wastewater effluent quality, but the wastewater effluent discharge still had negative effects on the water quality and biological conditions at the downstream sites. Wastewater effluent discharge into the upper Blue River likely contributed to changes in measures of ecosystem structure (streamflow, water chemistry, algal biomass, algal periphyton and macroinvertebrate community composition) and primary production, a measure of ecosystem function, along the upstream-downstream gradient. Because the Blue River Main Wastewater Treatment Facility is located in a rapidly urbanizing area, urbanization effects also may play a role in the decline in environmental and biological conditions along the upstream-downstream gradient. Despite these differences in environmental and biological conditions, ecosystem functional health was not impaired downstream from the WWTF during most times of the year, indicating the declines in environmental and biological conditions along the upstream-downstream gradient were not substantial enough to cause persistent changes in ecosystem function.

Kansas, Missouri

StreamStats—A quarter century of delivering web-based geospatial and hydrologic information to the public, and lessons learned

StreamStats is a U.S. Geological Survey (USGS) web application that provides streamflow statistics, such as the 1-percent annual exceedance probability peak flow, the mean flow, and the 7-day, 10-year low flow, to the public through a map-based user interface. These statistics are used in many ways, such as in the design of roads, bridges, and other structures; in delineation of floodplains for land-use zoning and setting of insurance rates; for regulatory purposes, such as the permitting of wastewater discharges; and for hydrologic and climate change studies. StreamStats was first developed for Massachusetts and released in 2001. The application provided users with the ability to obtain streamflow statistics computed from data collected at USGS streamgages and to obtain estimates of streamflow statistics for user-selected ungaged sites. Massachusetts StreamStats used geographic information system software and digital mapping to compute drainage-basin characteristics, which were then used in statistical models to estimate streamflow statistics for the user-selected sites. The statistical models were in the form of equations that were developed through a process known as regression analysis. StreamStats was the first known web application with the ability to do interactive geoprocessing. The utility of Massachusetts StreamStats was instantly apparent, leading the USGS to develop a version of StreamStats that could be implemented nationally. USGS State offices normally were required to develop custom regression equations and prepare local digital mapping data needed for implementing StreamStats for their States. Funding needed to complete this work usually was provided through cooperative agreements between the USGS and State agencies. In 2004, Idaho became the first to be released in the national version of StreamStats. By 2023, 44 States were fully implemented and six were undergoing implementation. StreamStats has undergone many modifications over the years to keep up with changes to the underlying software and to add functionality. Customized functionality and separate linked StreamStats applications were developed for several States. Meeting the high demand for additions and improvements to StreamStats while also adhering to budgetary constraints has, at times, been challenging. The StreamStats development team has identified numerous additional improvements that could be made to provide better performance and more functionality. The lessons learned from the experience of building and operating StreamStats for nearly 25 years could be relevant to others interested in pursuing efforts of a similar scale.

Circular

Turbidity as a factor in the decline of Great Lakes fishes with special reference to Lake Erie

Fish live and thrive in water with turbidities that range above 400 p.p.m. and average 200 p.p.m. The waters of the Great Lakes usually are clear except in Lake Erie where the turbidities of the inshore areas averaged 37 p.p.m.; the turbidities of the offshore waters averaged less. Lake Erie waters were no clearer 50 years ago than they are now. In fact, the turbidity values are less now than they were in the earlier years; the annual average of the inshore waters dropped from 44 p.p.m. before 1930 to 32 p.p.m. in 1930 and later, and the April-May values decreased from 72 p.p.m. to 46 p.p.m. Any general decline in the Lake Erie fishes cannot be attributed to increased turbidities. Furthermore, these turbidities averaged well below 100 p.p.m. and, therefore, were too low to affect fishes adversely. Turbidity in the open waters of Lake Erie is primarily the result of wave action induced by winds. River discharge is a minor factor even in the western end of the lake. Other probable factors are plankton, the eastward movement of the water mass, currents, seiches, and possibly bacteria. Wave action is undoubtedly the dominant agency in soil erosion along the shores of all of the Great Lakes. No evidence exists that fluctuations in the abundance of zooplankton, the basic food of fishes, and of the fishes themselves are positively correlated in Lake Erie or that the plankton crop in this lake is ever in short supply. On the contrary, all available evidence shows that Lake Erie is comparatively rich in plankton and that the western end in spite of its turbidity is richer than the eastern. Some factor other than turbidity dominates the basic productivity of western Lake Erie. With respect to turbidity Lake Erie has not become less suitable for fishes. This conclusion also receives support from the study of the fishes themselves. It was demonstrated that the growth of the western Lake Erie fishes compared very favorably with that of fishes in the other Great Lakes or similar waters. It was shown further that the known occurrence of relatively strong year classes in this lake was not consistently associated with low turbidities and conversely that the known low turbidities of the Lake Erie waters were not always accompanied by large year classes. Also, contrary to the &ldquo;turbidity theory,&rdquo; certain clean-water varieties, such as the walleye, have increased tremendously in recent years in Lake Erie, whereas the supposedly turbid-water forms, such as the sauger, have decreased in abundance. Reference was made to Doan's work, wherein he attempted to show correlation between turbidity and abundance for several species of Lake Erie fish but failed to do so except for the sauger where he reported a positive correlation. With respect to the productivity of fishes Lake Erie ranks first among the Great Lakes, and the western end in spite of its greater turbidity surpasses the eastern. As judged by certain accepted standards of water suitability, Lake Erie ranks high, and the western end again surpasses the eastern. Finally, it was pointed out that fishes which inhabit the clear waters of the Great Lakes declined as well as those which live in the more turbid waters and that turbidity, therefore, cannot be a factor in the depletion of all Great Lakes fishes. Furthermore, the reduction in abundance repeatedly has been associated with increased fishing intensity. All of the evidence indicates, then, that soil erosion on farms and the turbidity of the water were not major factors, if operative at all, in the decline of Great Lakes fishes and that they did not make Lake Erie unsuitable for fish life.

Transactions of the American Fisheries Society

Evaluation of alternative groundwater-withdrawal scenarios on water levels in Kingsbury Pond, upper Charles River Basin, eastern Massachusetts

Kingsbury Pond is a glacial kettle pond in the town of Norfolk, Massachusetts, in the Mill River Basin, which is part of the Upper Charles River Basin in eastern Massachusetts. The pond is hydraulically connected to the surrounding groundwater-flow system, and water levels in the pond fluctuate in response to recharge to the aquifer from precipitation and wastewater return flows through septic systems, to withdrawals from the aquifer at nearby wells, and to precipitation directly on the pond surface. Concerns about the effects of withdrawals on water levels in the pond prompted an investigation to better understand the hydrology of Kingsbury Pond and its response to groundwater withdrawals and to determine if withdrawals from wells in Franklin, Mass., can be modified to simultaneously reduce the effect on water levels in the pond and yet meet the water-supply demands of the Town of Franklin. An existing, transient groundwater-flow model of the Upper Charles River Basin was modified for this study in the area near Kingsbury Pond to improve representation of the hydrologic system near the pond. The mean annual water-level altitude simulated for the pond for nonpumping conditions using the modified model is 136 feet (ft), which falls within the range of likely annual pond-altitude fluctuations of 135 to 140 ft estimated for average hydrologic conditions before the beginning of withdrawals at two nearby wells operated by the Town of Franklin (wells FR–04 and FR–05). The mean annual water-level altitude at the pond decreased by 3.8 ft to 132.2 ft for simulated mean monthly withdrawal rates at all wells within the Upper Charles River Basin from 2010 to 2019 (referred to as the baseline withdrawal condition). A groundwater management model that links the groundwater-flow model with a mathematical optimization method was developed to evaluate the effects of three alternative groundwater-withdrawal scenarios for the Franklin public-water system on water levels in Kingsbury Pond. In the first scenario, monthly withdrawal rates at wells FR–04 and FR–05 were increased from the baseline withdrawal rates to their maximum authorized rates for all months of the year; all other Franklin wells were specified at their baseline withdrawal rates. This scenario resulted in a mean annual water-level altitude at the pond of 129.3 ft, or a mean annual decline of 6.7 ft compared with nonpumping conditions and a decline of 2.9 ft compared with baseline conditions. The results of the second scenario showed that water levels in the pond can be increased relative to 2010–19 conditions while meeting Franklin’s 2010–19 monthly water-supply demands if withdrawals at wells FR–04 and FR–05 were shifted to other Franklin wells. In this scenario, monthly withdrawal rates at wells FR–04 and FR–05 were decreased from their baseline rates to one-third their maximum practical rates for all months of the year; increased withdrawal rates at other Franklin wells were determined by the management model. The decrease in withdrawal rates at wells FR–04 and FR–05 resulted in a mean water-level altitude at the pond of 134.1 ft, which was equivalent to a 51 percent increase (improvement) in the mean annual water level of the pond relative to the baseline condition. A third scenario was done to determine if Franklin’s existing water-supply system has the capacity to meet the mean annual maximum permitted withdrawal rate of the system of 3.45 million gallons per day while maintaining monthly withdrawal rates at wells FR–04 and FR–05 at their 2010–19 rates and water levels in Kingsbury Pond at baseline conditions. The analysis indicated that the capacity of the system cannot meet the increased demand during some months of the year with withdrawal rates at the two wells fixed at their monthly 2010–19 rates; however, the existing system is capable of meeting about 90 percent of the maximum permitted rate (3.10 million gallons per day) by increasing withdrawal rates at other Franklin wells above their 2010–19 rates.

Massachusetts