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USGS2020

How and why is the timing and occurrence of seasonal migrants in the Gulf of Maine changing due to climate?

Plants and animals undergo certain recurring life-cycle events, such as migrations between summer and winter habitats or the annual blooming of plants. Known as phenology, the timing of these events is very sensitive to changes in climate (and changes in one species’ phenology can impact entire food webs and ecosystems). Shifts in phenology have been described as a “fingerprint” of the temporal and spatial responses of wildlife to climate change impacts. Thus, phenology provides one of the strongest indicators of the adaptive capacity of organisms (or the ability of organisms to cope with future environmental conditions). In this study, researchers are exploring how the timing and occurrence of a number of highly migratory marine animals is changing due to a series of climatic and ecological shifts. First, using existing long-term historical data series, they will determine the direction and magnitude of how migration, abundance, or other phenological factors have changed for marine mammals, sea turtles, and fishes that migrate into the Gulf of Maine on a seasonal basis. Because marine animals are inherently difficult to detect, the team will apply dynamic occupancy models to evaluate seasonal migration patterns and habitat use across multiple habitats in the Gulf of Maine region. The project team will also synthesize regional information on a key, ecologically-important prey fish, sandlance, whose timing and abundance is a strong predictor of the occurrence and behavior of predator species targeted in this study as well as a range of other regional fish and wildlife of conservation and management concern. Results from this component of the project will identify coastal fish and wildlife species that are relatively more or less able to adapt and thus potentially vulnerable to climate change; determine the likely primary drivers of those changes; and identify data gaps and future monitoring needs. Ultimately, this information will be available and useful for regional coastal management and adaptation decisions that will allow managers to effectively plan for the future. In a second component of the project, researchers will focus specifically on changes in migration patterns of the endangered North Atlantic right whale. While shifts in the distribution and time of recurring life events are adaptive responses that may help species cope with climate impacts, they can also lead to changes in how species interact with humans. The North Atlantic right whale is one of the most endangered whale species on the planet. In the North Atlantic Ocean, ship strikes and entanglements with commercial fishing gear represent fatal threats to right whales. Recent reports suggest that North Atlantic right whale migration patterns have changed. Many researchers posit that shifts in migration are responsible for recent increases in the overlap between right whales and human activities, especially fishing. To help understand how changes in right whale movements and behaviors may overlap with ship traffic, and thus put the animals at risk of encountering vessels, we will combine right whale habitat models with ship traffic maps. The end result will be a set of maps identifying risk levels.

Gulf of Maine↗

USGS2016

Mechanistic variables can enhance predictive models of endotherm distributions: The American pika under current, past, and future climates

How climate constrains species’ distributions through time and space is an important question in the context of conservation planning for climate change. Despite increasing awareness of the need to incorporate mechanism into species distribution models (SDMs), mechanistic modeling of endotherm distributions remains limited in this literature. Using the American pika ( Ochotona princeps ) as an example, we present a framework whereby mechanism can be incorporated into endotherm SDMs. Pika distribution has repeatedly been found to be constrained by warm temperatures, so we used Niche Mapper, a mechanistic heat-balance model, to convert macroclimate data to pika-specific surface activity time in summer across the western United States. We then explored the difference between using a macroclimate predictor (summer temperature) and using a mechanistic predictor (predicted surface activity time) in SDMs. Both approaches accurately predicted pika presences in current and past climate regimes. However, the activity models predicted 8–19% less habitat loss in response to annual temperature increases of ~3–5 °C predicted in the region by 2070, suggesting that pikas may be able to buffer some climate change effects through behavioral thermoregulation that can be captured by mechanistic modeling. Incorporating mechanism added value to the modeling by providing increased confidence in areas where different modeling approaches agreed and providing a range of outcomes in areas of disagreement. It also provided a more proximate variable relating animal distribution to climate, allowing investigations into how unique habitat characteristics and intraspecific phenotypic variation may allow pikas to exist in areas outside those predicted by generic SDMs. Only a small number of easily obtainable data are required to parameterize this mechanistic model for any endotherm, and its use can improve SDM predictions by explicitly modeling a widely applicable direct physiological effect: climate-imposed restrictions on activity. This more complete understanding is necessary to inform climate adaptation actions, management strategies, and conservation plans.

Global Change Biology↗

USGS1978

Impacts of vehicles on natural terrain at seven sites in the San Francisco Bay area

The impacts of off-road vehicles on vegetation and soil were investigated at seven representative sites in the San Francisco Bay area. Plant cover of grass and chaparral (with shrubs to 4 m tall) have been stripped by the two- and four-wheel vehicles in use. Impacts on loamy soils include increased surface strength (as much as 275 bars), increased bulk density (averaging 18%) to depths of 90 cm or more, reduction of soil moisture by an average 43% to 30 cm depths, greatly reduced infiltration, extension of the diurnal temperature range by as much as 12??C, and reduction of organic carbon by an average 33% in exposed soils. Very sandy soils respond similarly to vehicular use except that moisture is increased and surface strength of beach sand is decreased. These physical and chemical impacts reduce the land's capability of restoring its vegetative cover, which in turn adversely affects animal populations. Both the loss of plant cover and the physical changes caused by vehicles promote erosion. Measured soil and substrate losses from vehicular use zones range from 7 to 1180 kg/m2. The estimated erosion rate of the Chabot Park site exceeds the rate of erosion considered a serious problem by a factor 30, it exceeds United States Soil Conservation Service tolerance values by a factor of 46, and it exceeds average San Francisco Bay area erosion rates by a factor of 17. The resulting soil losses are effectively permanent. Neither the increased sediment yield nor the increased runoff is accomodated on the sites of use, and both are causing adverse effects to neighboring properties. ?? 1978 Springer-Verlag New York Inc.

Environmental Geology↗

USGS1996

A resource conservative procedure for comparison of dose-response relationships

The evaluation of effects of toxicants on a wildlife community can be complicated by varying responses among the community's constituent populations. Even within populations, considerable variability in dose-response relations may result from different avenues of exposure to the toxicant. Full-scale investigations of the dose-response relations among a variety of species and avenues of exposure can therefore be prohibitively expensive, whether this expense is measured by the number of experimental animals needed, by the human resources committed to the study, or by laboratory expenses. We propose an abbreviated protocol for investigations of multiple dose-response relations that is designed to limit these expenses. The protocol begins with the judicious choice of a baseline dose-response relation to be estimated by a full-scale study involving a minimum of five doses levels, with 10 subjects per dose level. This relation is then used as the basis for rapid screening of subsequent dose-response relations, which are compared to the baseline relation by testing for differences in the median effective dosages. These secondary studies can consist of as few as 14 animals exposed to the estimated median lethal concentration from the baseline study. We describe MS-DOS-compatible software available from the authors that can be used to analyze these data.

Environmental Toxicology and Chemistry↗

USGS2007

Use of multiple chemical tracers to define habitat use of Indo-Pacific mangrove crab, Scylla serrata (Decapoda: Portunidae)

The mangrove or mud crab, Scylla serrata, is an important component of mangrove fisheries throughout the Indo-Pacific. Understanding crab diets and habitat use should assist in managing these fisheries and could provide additional justification for conservation of the mangrove ecosystem itself. We used multiple chemical tracers to test whether crab movements were restricted to local mangrove forests, or extended to include adjacent seagrass beds and reef flats. We sampled three mangrove forests on the island of Kosrae in the Federated States of Micronesia at Lelu Harbor, Okat River, and Utwe tidal channel. Samples of S. serrata and likely food sources were analyzed for stable carbon (??13C), nitrogen (??15N), and sulfur (??34S) isotopes. Scylla serrata tissues also were analyzed for phosphorus (P), cations (K, Ca, Mg, Na), and trace elements (Mn, Fe, Cu, Zn, and B). Discriminant analysis indicated that at least 87% of the crabs remain in each site as distinct populations. Crab stable isotope values indicated potential differences in habitat use within estuaries. Values for ??13C and ??34S in crabs from Okat and Utwe were low and similar to values expected from animals feeding within mangrove forests, e.g., feeding on infauna that had average ??13C values near -26.5???. In contrast, crabs from Lelu had higher ?? 13C and ??34S values, with average values of -21.8 and 7.8???, respectively. These higher isotope values are consistent with increased crab foraging on reef flats and seagrasses. Given that S. serrata have been observed feeding on adjacent reef and seagrass environments on Kosrae, it is likely that they move in and out of the mangroves for feeding. Isotope mixing model results support these conclusions, with the greatest mangrove ecosystem contribution to S. serrata diet occurring in the largest mangrove forests. Conserving larger island mangrove forests (> 1 km deep) appears to support crab foraging activities. ?? 2007 Coastal and Estuarine Research Federation.

Estuaries and Coasts↗

USGS2017

Dynamic optimization of landscape connectivity embedding spatial-capture-recapture information

Maintaining landscape connectivity is increasingly important in wildlife conservation, especially for species experiencing the effects of habitat loss and fragmentation. We propose a novel approach to dynamically optimize landscape connectivity. Our approach is based on a mixed integer program formulation, embedding a spatial capture-recapture model that estimates the density, space usage, and landscape connectivity for a given species. Our method takes into account the fact that local animal density and connectivity change dynamically and non-linearly with different habitat protection plans. In order to scale up our encoding, we propose a sampling scheme via random partitioning of the search space using parity functions. We show that our method scales to realworld size problems and dramatically outperforms the solution quality of an expectation maximization approach and a sample average approximation approach.

Conference Paper↗

USGS2015

Spatial and temporal use of a prairie dog colony by coyotes and rabbits: Potential indirect effects on endangered black-footed ferrets

In western North America, endangered black-footed ferrets M ustela nigripes are conserved via reintroduction to colonies of prairie dogs C ynomys spp., their primary prey. Predation is an important source of mortality; coyotes C anis latrans appear to be the most problematic predator, accounting for 67% of known predation events on radio-tagged ferrets. Little is known about what factors affect spatial use of prairie dog colonies by coyotes, or how other animals might affect interactions between coyotes and ferrets. During June–October 2007–2008, we used spotlight surveys to monitor coyotes and ferrets (both years) and rabbits S ylvilagus spp. (first year) on a 452-ha colony of black-tailed prairie dogs C ynomys ludovicianus in the Conata Basin, South Dakota. Coyotes appeared to select areas of the colony used by rabbits, suggesting coyotes hunted rabbits, a common item in their diet. Between midnight and sunrise, ferrets were most commonly observed during early morning (01:00–03:00 h), whereas coyotes were observed mostly during dawn (04:00 h – sunrise) when ferrets were rarely seen. These temporal differences in the timing of observations suggest ferrets tend to remain underground in burrows when coyotes are most active. Coyotes appeared to be attracted to rabbits in both space and time, suggesting the risk of predation for ferrets might relate to the abundance and locations of rabbits in prairie dog colonies.

South Dakota↗

USGS2008

Population structure of the alligator snapping turtle, macrochelys temminckii, on the western edge of its distribution

A mark-recapture project on Macrochelys temminckii was conducted between 1997 and 2000 at Sequoyah National Wildlife Refuge, Muskogee and Sequoyah counties, in eastern Oklahoma. Turtles were captured in all streams and exhibited equal sex ratios, marked sexual-size dimorphism, and population densities between 28 and 34 animals per km stretch of stream. There was evidence of past population perturbations, with very few large adults captured, and a cohort of subadults highly underrepresented. ?? 2008 Chelonian Research Foundation.

Chelonian Conservation and Biology↗

USGS2013

Greater sage-grouse nest predators in the Virginia Mountains of northwestern Nevada

Greater sage-grouse Centrocercus urophasianus, hereafter sage-grouse, populations have declined across their range due to the loss, degradation, and fragmentation of habitat. Habitat alterations can lead not only to vegetative changes but also to shifts in animal behavior and predator composition that may influence population vital rates, such as nest success. For example, common ravens Corvus corax are sage-grouse nest predators, and common raven abundance is positively associated with human-caused habitat alterations. Because nest success is a central component to sage-grouse population persistence, research that identifies factors influencing nest success will better inform conservation efforts. We used videography to unequivocally identify sage-grouse nest predators within the Virginia Mountains of northwestern Nevada, USA, from 2009 to 2011 and used maximum likelihood to calculate daily probability of nest survival. In the Virginia Mountains, fires, energy exploration, and other anthropogenic activities have altered historic sage-grouse habitat. We monitored 71 sage-grouse nests during the study, placing video cameras at 39 nests. Cumulative nest survival for all nests was 22.4% (95% CI, 13.0–33.4%), a survival rate that was significantly lower than other published results for sage-grouse in the Great Basin. Depredation was the primary cause for nest failure in our study (82.5%), and common ravens were the most frequent sage-grouse nest predator, accounting for 46.7% of nest depredations. We also successfully documented a suite of mammalian and reptilian species depredating sage-grouse nests, including some predators never previously confirmed in the literature to be sage-grouse nest predators (i.e., bobcats Lynx rufus and long-tailed weasels Mephitis frenata). Within the high elevation, disturbed habitat of the Virginia Mountains, low sage-grouse nest success may be limiting sage-grouse population growth. These results suggest that management actions that restore habitat in the Virginia Mountains and decrease anthropogenic subsidies of ravens will benefit sage-grouse.

Nevada↗

USGS2020

U.S. Geological Survey sagebrush ecosystem research annual report for 2020

The sagebrush ( Artemisia spp.) ecosystem extends across 251,473 square miles over portions of 13 western States. Affected by multiple stressors, including interactions among fire, invasive plants, and human land uses, this ecosystem has experienced significant loss, fragmentation, and degradation of landscapes once dominated by sagebrush. In turn, wildlife populations have declined following these deleterious conditions. Federal, State, local, and Tribal agencies, nongovernmental organizations, and industry have been galvanized by declining wildlife populations to implement management actions to confront the impacts of these stressors and ensure the long-term availability of the sagebrush ecosystem for the broad range of uses critical to stakeholders in the Western United States. The sagebrush ecosystem provides habitat for more than 350 species of plants and animals that are dependent on sagebrush for all or part of their annual life history. The greater sage-grouse ( Centrocercus urophasianus ) stands out as an iconic species of this ecosystem. Sage-grouse populations occur in 11 States, and 2 Canadian Provinces and require relatively large expanses of sagebrush-dominated habitat to meet all their seasonal habitat needs. Recent management actions to conserve and maintain the sagebrush ecosystem have focused on the protection and restoration of sage-grouse habitat; however, each of the 350 species has a unique life history and differing area requirements (for example, large areas for mule deer [ Odocoileus hemionus ] and small areas for pygmy rabbit [ Brachylagus idahoensis ]), and some species, such as migratory birds, rely on various parts of the sagebrush ecosystem but only for part of the year (for example, Brewer’s sparrow [ Spizella breweri ]). The U.S. Geological Survey (USGS) has a broad research program focused on the sagebrush ecosystem, wildlife species within the ecosystem, and the species’ response to stressors and management actions. The program provides a foundation of scientific information for use in major land and resource management decisions in the sagebrush ecosystem. By providing the science to inform these decisions, the USGS is assisting land and resource managers at the Federal, State, Tribal, and local levels working towards the goal of sustainable wildlife populations and restored landscapes. This information can inform planning and management conducted by nongovernmental organizations as well. USGS research is tailored specifically to inform adaptive management, improve strategies for maintaining existing areas of intact sagebrush, and restoring degraded landscapes. Examples of research support for partners include providing information for actions such as the preclusion of the need to list the greater sage-grouse under the Endangered Species Act and recent revisions to Bureau of Land Management and U.S. Department of Agriculture Forest Service resource management plans and land use. The USGS continues to provide foundational science to inform science-based decisions within the U.S. Department of the Interior and other Federal, State, and local agencies and their continued conservation, management, and restoration of the sagebrush ecosystem to help support local economies.

Arizona, California, Colorado, Idaho, Montana, Nev↗

USGS2021

Harvest as a tool to manage populations of undesirable or overabundant fish and wildlife

Harvest is a common management tool for fish and game species and can also be used for overabundant populations when stakeholders want to reduce populations reduced and still provide recreational opportunities. The authors propose a framework to determine if harvest can be used to control populations when overabundance is an issue, stakeholders support harvest, information is available to set harvest goals and evaluate impacts of harvest, and assessments are conducted to evaluate unintended consequences of harvest. The chapter provides two case examples of mid-continent light geese and blue catfish in the Chesapeake Bay watershed, for which overabundance was a problem and stakeholders had interest in harvest. Substantial data existed to set goals for light geese whereas blue catfish data were limited. For both light geese and blue catfish, desired outcomes have not yet been achieved, but hunting and fishing opportunities generated societal benefits despite existing barriers to increasing harvest. Harvest to control overabundant populations can be a useful tool, but consideration of stakeholder support, the data require to establish and monitor goals, and unintended consequences should be considered for an effective harvest plan. Harvest is a common management tool used for centuries to limit populations of game species (Caughley 1977, Redmond 1986). Managing populations using harvest regulations allow certain sizes, numbers, sex, and species to be harvested, and often include open or closed seasons. Regulated hunting opportunity and harvest are cornerstones of the North American Model of Wildlife Conservation, which developed gradually following unregulated harvest of wildlife populations that often were at risk of overharvest or extinction (Geist et al. 2001). Since then, many populations have recovered and expanded to the point where harvest regulations are now often used to limit or even reduce populations of some species. In general, harvest regulations have been well established as an effective way to control animal populations in many aquatic and terrestrial systems and are broadly accepted among the hunting and fishing public. For example, harvest regulations have been established or adapted to reduce or control populations of feral hogs (Sus scrofa; Hanson et al. 2009), white-tailed deer (Odocoileus virginianus; Simard et al. 2013) and cougar (Puma concolor; Cooley et al. 2009), overabundant small black bass (Micropertus spp.; Isermann and Paukert 2010), northern pike (Esox lucius; Pierce 2010) or non-native species (Arlinghaus et al. 2016b). Harvest has also been employed as a tool for controlling populations of invasive species. However, in many cases invasive species are so overabundant that a substantial commitment to harvest is necessary, which may exceed recreational harvest capacity and require commercial harvest or an active lethal control program by management agencies. Often removal of invasive species is challenging because the ultimate goal may be to eliminate the entire population, which may require impractical efforts. For example, controlling Asian carp in the Illinois River may require harvest rates of at least 70% (Tsehaye et al. 2013), whereas in the Great Smoky Mountains, an annual harvest rate of 40% would be necessary to decrease feral hog populations (Salinas et al. 2015). Many invasive species are known to negatively impact native species and ecosystems; thus, eradication is an ideal outcome. However, there may be opportunity to use harvest to control populations of native (or non-native) species that have some value yet are still overabundant. In this chapter, we explore the process of using harvest to control overabundant populations that have some recreational value, provide two examples to control overabundant populations using harvest, and describe the challenges and effectiveness associated with these efforts and some of the unintended effects of using harvest to control populations.

Book chapter↗

USGS2016

A generalizable energetics-based model of avian migration to facilitate continental-scale waterbird conservation

Conserving migratory birds is made especially difficult because of movement among spatially disparate locations across the annual cycle. In light of challenges presented by the scale and ecology of migratory birds, successful conservation requires integrating objectives, management, and monitoring across scales, from local management units to ecoregional and flyway administrative boundaries. We present an integrated approach using a spatially explicit energetic-based mechanistic bird migration model useful to conservation decision-making across disparate scales and locations. This model moves a mallard-like bird (Anas platyrhynchos), through spring and fall migration as a function of caloric gains and losses across a continental scale energy landscape. We predicted with this model that fall migration, where birds moved from breeding to wintering habitat, took a mean of 27.5 days of flight with a mean seasonal survivorship of 90.5% (95% CI = 89.2%, 91.9%) whereas spring migration took a mean of 23.5 days of flight with mean seasonal survivorship of 93.6% (95% CI = 92.5%, 94.7%). Sensitivity analyses suggested that survival during migration was sensitive to flight speed, flight cost, the amount of energy the animal could carry and the spatial pattern of energy availability, but generally insensitive to total energy availability per se. Nevertheless, continental patterns in the bird-use days occurred principally in relation to wetland cover and agricultural habitat in the fall. Bird-use days were highest in both spring and fall in the Mississippi Alluvial Valley and along the coast and near-shore environments of South Carolina. Spatial sensitivity analyses suggested that locations nearer to migratory endpoints were less important to survivorship; for instance, removing energy from a 1,036 km2 stopover site at a time from the Atlantic Flyway suggested coastal areas between New Jersey and North Carolina, including Chesapeake Bay and the North Carolina piedmont, are essential locations for efficient migration and increasing survivorship during spring migration but not locations in Ontario and Massachusetts. This sort of spatially explicit information may allow decision-makers to prioritize their conservation actions toward locations most influential to migratory success. Thus, this mechanistic model of avian migration provides a decision-analytic medium integrating the potential consequences of local actions to flyway-scale phenomena.

Ecological Applications↗

USGS2021

Predicted spatial distribution of the Eastern Spotted Skunk (Spilogale putorius) in Virginia using detection and non-detection records

The geographic distribution of a species is a fundamental component in understanding its ecology and is necessary for forming effective conservation plans. For rare and elusive species of conservation concern, accurate maps of predicted occurrence are particularly problematic and often highly subjective. Spilogale putorius (Eastern Spotted Skunk) populations have experienced large declines since the 1940s. Their elusive behavior and perceived rarity result in low detection probability when using conventional methods for sampling small mammals. Low detection probability often causes uncertainty as to where Eastern Spotted Skunks could be a management concern. We modeled the distribution of predicted occurrence of Eastern Spotted Skunks using verifiable occurrence and non-detection records obtained throughout Virginia from 2010 to 2020. Occurrence data consisted of trapping records reported to the Virginia Department of Wildlife Resources, incidental photo-verified reports of sightings and road-killed animals, and remote-camera detections. Non-detections were presumed at baited remote-camera locations following intense survey efforts. We fit predicted occurrence models using generalized linear modeling in an information-theoretic framework using the package ‘stats’ in Program R. Our results incidated a greater probability of presence from the Blue Ridge westward, increasing with slope steepness along northeastern- to southeastern-facing slopes and decreasing with slope steepness along southeastern- to southwestern-facing slopes. Emergent rock outcrops prominent along northeastern slopes offer ample protective rocky cover, whereas mixed Quercus spp. (oak), Kalmia latifolia (Mountain Laurel), and Rhododendron maximum (Rosebay Rhododendron) forest communities along southern-facing slopes provide suitable areas of cover, both of which are critical for spotted skunk survival and reproductive success. Our analysis provides insight into the relationships between landscape features and Eastern Spotted Skunk distributions across Virginia. Understanding these relationships is critical for the effective management and conservation of this vulnerable species.

Virginia↗

USGS1989

Translocation as a species conservation tool: Status and strategy

Surveys of recent (1973 to 1986) intentional releases of native birds and mammals to the wild in Australia, Canada, Hawaii, New Zealand, and the United States were conducted to document current activities, identify factors associated with success, and suggest guidelines for enhancing future work. Nearly 700 translocations were conducted each year. Native game species constituted 90 percent of translocations and were more successful (86 percent) than were translocations of threatened, endangered, or sensitive species (46 percent). Knowledge of habitat quality, location of release area within the species range, number of animals released, program length, and reproductive traits allowed correct classification of 81 percent of observed translocations as successful or not.

Science↗

USGS2021

Waif gopher tortoise survival and site fidelity following translocation

Gopher tortoises ( Gopherus polyphemus ) are among the most commonly translocated reptiles. Waif tortoises are animals frequently of unknown origin that have been displaced from the wild and often held in human possession for various reasons and durations. Although there are risks associated with any translocation, waif tortoises are generally excluded from translocation projects because of heightened concerns of introducing pathogens and uncertainty about the post-release survival of these individuals. If these risks could be managed, waif tortoises could have conservation value because they can provide the needed numbers to stabilize populations. In the early 1990s, the discovery of an isolated population of gopher tortoises (≤15 individuals) near Aiken, South Carolina, USA, prioritized establishment of the Aiken Gopher Tortoise Heritage Preserve (AGTHP). Because of the population's need for augmentation and the site's isolation from other tortoise populations, the AGTHP provided the opportunity to evaluate the post-release survival of translocated waif tortoises without compromising a viable population. Since 2006, >260 waif tortoises have been introduced to the preserve. Using a Cormack-Jolly-Seber modeling framework to analyze release records and capture histories from trapping efforts in 2017 and 2018, we estimated the long-term apparent survival and site fidelity of this population composed largely of waif tortoises. We estimated annual apparent survival probabilities to be high (≥0.90) for subadult, adult male, and adult female tortoises, and these rates were similar to those reported for wild-to-wild translocated gopher tortoises and those from unmanipulated populations. Of the tortoises recaptured within the boundaries of the preserve, 75% were located within 400 m of their release location. These results suggest that waif tortoises could be an important resource in reducing the extirpation risk of isolated populations. © 2021 The Wildlife Society.

South Carolina↗

USGS2003

Evidence of disease-related amphibian decline in Colorado

The recent discovery of a pathogenic fungus (Batrachochytrium dendrobatidis) associated with declines of frogs in the American and Australian tropics, suggests that at least the proximate cause, may be known for many previously unexplained amphibian declines. We have monitored boreal toads in Colorado since 1991 at four sites using capturea??recapture of adults and counts of egg masses to examine the dynamics of this metapopulation. Numbers of male toads declined in 1996 and 1999 with annual survival rate averaging 78% from 1991 to 1994, 45% in 1995 and 3% between 1998 and 1999. Numbers of egg masses also declined. An etiological diagnosis of chytridiomycosis consistent with infections by the genus Batrachochytrium was made in six wild adult toads. Characteristic histomorphological features (i.e. intracellular location, shape of thalli, presence of discharge tubes and rhizoids) of chytrid organisms, and host tissue response (acanthosis and hyperkeratosis) were observed in individual toads. These characteristics were indistinguishable from previously reported mortality events associated with chytrid fungus. We also observed epizootiological features consistent with mortality events associated with chytrid fungus: an increase in the ratio of female:male toads captured, an apparent spread of mortalities within the metapopulation and mortalities restricted to post metamorphic animals. Eleven years of population data suggest that this metapopulation of toads is in danger of extinction, pathological and epizootiological evidence indicates that B. dendrobatidis has played a proximate role in this process

Colorado↗

USGS2019

Coelomic disorders of fishes

Dropsy is a commonly applied term for coelomic distention due to ascites, or the effusion and collection of fluid freely throughout the coelomic cavity. Dropsy, or ascites, is generally a sign of another ongoing disease process, oftentimes one that is multisystemic and impacting coelomic organs and tissues. Dropsy may be caused by a variety of potential etiological agents, both infectious and noninfectious. Stressors such as rapid change in water temperature may predispose fish to bacterial diseases associated with dropsy. Clinically affected fish display coelomic distension of varying degrees of severity. Generally considered a disease syndrome similar to dropsy, affecting specifically Malawi cichlids, a popular group of ornamental fish among aquarium hobbyists. Water belly occurs among salt water pen-reared salmonid fish, including Atlantic salmon, Chinook salmon and rainbow trout. Dietary changes such as reduction of the feeding rate have been reported to improve the condition among affected fish.

Book chapter↗

USGS2018

Carnivore hotspots in Peninsular Malaysia and their landscape attributes

Mammalian carnivores play a vital role in ecosystem functioning. However, they are prone to extinction because of low population densities and growth rates, and high levels of persecution or exploitation. In tropical biodiversity hotspots such as Peninsular Malaysia, rapid conversion of natural habitats threatens the persistence of this vulnerable group of animals. Here, we carried out the first comprehensive literature review on 31 carnivore species reported to occur in Peninsular Malaysia and updated their probable distribution. We georeferenced 375 observations of 28 species of carnivore from 89 unique geographic locations using records spanning 1948 to 2014. Using the Getis-Ord Gi*statistic and weighted survey records by IUCN Red List status, we identified hotspots of species that were of conservation concern and built regression models to identify environmental and anthropogenic landscape factors associated with Getis-Ord Gi* z scores. Our analyses identified two carnivore hotspots that were spatially concordant with two of the peninsula’s largest and most contiguous forest complexes, associated with Taman Negara National Park and Royal Belum State Park. A cold spot overlapped with the southwestern region of the Peninsula, reflecting the disappearance of carnivores with higher conservation rankings from increasingly fragmented natural habitats. Getis-Ord Gi* z scores were negatively associated with elevation, and positively associated with the proportion of natural land cover and distance from the capital city. Malaysia contains some of the world’s most diverse carnivore assemblages, but recent rates of forest loss are some of the highest in the world. Reducing poaching and maintaining large, contiguous tracts of lowland forests will be crucial, not only for the persistence of threatened carnivores, but for many mammalian species in general.

PLoS ONE↗