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Biological soil crusts in ecological restoration: Emerging research and perspectives

Drylands encompass over 40% of terrestrial ecosystems and face significant anthropogenic degradation causing a loss of ecosystem integrity, services, and deterioration of social‐ecological systems. To combat this degradation, some dryland restoration efforts have focused on the use of biological soil crusts (biocrusts): complex communities of cyanobacteria, algae, lichens, bryophytes, and other organisms living in association with the top millimeters of soil. Biocrusts are common in many ecosystems and especially drylands. They perform a suite of ecosystem functions: stabilizing soil surfaces to prevent erosion, contributing carbon through photosynthesis, fixing nitrogen, and mediating the hydrological cycle in drylands. Biocrusts have emerged as a potential tool in restoration; developing methods to implement effective biocrust restoration has the potential to return many ecosystem functions and services. Although culture‐based approaches have allowed researchers to learn about the biology, physiology, and cultivation of biocrusts, transferring this knowledge to field implementation has been more challenging. A large amount of research has amassed to improve our understanding of biocrust restoration, leaving us at an opportune time to learn from one another and to join approaches for maximum efficacy. The articles in this special issue improve the state of our current knowledge in biocrust restoration, highlighting efforts to effectively restore biocrusts through a variety of different ecosystems, across scales and utilizing a variety of lab and field methods. This collective work provides a useful resource for the scientific community as well as land managers.

Restoration Ecology

Mesophotic octocoral larval settlement preferences and behaviors

Introduction Lab-based coral reproduction is advancing restoration efforts to support coral populations injured by the 2010 Deepwater Horizon oil spill. Objectives This study aimed to answer foundational questions concerning coral spawning and larval settlement that need to be resolved for these mesophotic and deep-sea coral species before restoration efforts can be scaled up. Methods From 2021 to 2023, fragments of the mesophotic octocorals Swiftia exserta and Thesea nivea were collected from the continental shelf offshore from Texas to Florida and transported to a federal facility in Florida. Multiyear spawning allowed for in-depth analysis of spawning periodicity, egg development, larval behavior, settlement rate, and substrate preference. In addition, we determined the likelihood of successful development and survival during early stages of development. Results Fertilization rates remained high throughout spawning periods of both species, with S. exserta spawning during a 1-month period and T. nivea continuing to spawn year-round. Larvae from both corals significantly preferred tiles seeded with crustose coralline algae, and there were species-specific preferences in substrate material. Additionally, larval survival or mortality was typically evident within a few days when in the presence of settlement substrates. In the absence of substrates, we observed larvae surviving for up to 2 months without settling. Conclusions This work answers critical questions to inform the long-term logistical planning for eventual out-planting of these species. Further, it highlights avenues that could accelerate future restoration-based reproduction efforts into unexplored mesophotic and deep species.

Alabama, Louisiana, Mississippi, Texas

Stony coral tissue loss disease indirectly alters reef communities

Many Caribbean coral reefs are near collapse due to various threats. An emerging threat, stony coral tissue loss disease (SCTLD), is spreading across the Western Atlantic and Caribbean. Data from the U.S. Virgin Islands reveal how SCTLD spread has reduced the abundance of susceptible coral and crustose coralline algae and increased cyanobacteria, fire coral, and macroalgae. A Caribbean-wide structural equation model demonstrates versatility in reef fish and associations with rugosity independent of live coral. Model projections suggest that some reef fishes will decline due to SCTLD, with the largest changes on reefs that lose the most susceptible corals and rugosity. Mapping these projected declines in space indicates how the indirect effects of SCTLD range from undetectable to devastating.

Virgin Islands

On phytoplankton trends

P hytoplankton—unicellular algae in the surface layer of lakes and oceans—fuel the lacustrine and marine food chains and play a key role in regulating atmospheric carbon dioxide concentrations. How will rising carbon dioxide concentrations in the air and surface ocean in turn affect phytoplankton? Answering this question is crucial for projecting future climate change. However, because phytoplankton species populations appear and disappear within weeks, assessing change requires high-resolution monitoring of annual cycles over many years. Such long-term studies at coastal sites ranging from estuaries and harbors to open coastlines and islands are yielding bewildering variability, but also fundamental insights on the driving forces that underlie phytoplankton cycles.

Science

Drifting organisms in the Precambrian Sea

Drag marks in the Upper Precambrian Winnall Beds of central Australia were made by semibuoyant flexible objects at least 15 centimeters long, which presumably were algae. This find extends the range of such marks into the Precambrian era and supplements the discovery of microflora in the same sedimentary sequence.

central Australia

Keystone predators govern the pathway and pace of climate impacts in a subarctic marine ecosystem

Predator loss and climate change are hallmarks of the Anthropocene yet their interactive effects are largely unknown. Here, we show that massive calcareous reefs, built slowly by the alga Clathromorphum nereostratum over centuries to millennia, are now declining because of the emerging interplay between these two processes. Such reefs, the structural base of Aleutian kelp forests, are rapidly eroding because of overgrazing by herbivores. Historical reconstructions and experiments reveal that overgrazing was initiated by the loss of sea otters, Enhydra lutris (which gave rise to herbivores capable of causing bioerosion), and then accelerated with ocean warming and acidification (which increased per capita lethal grazing by 34 to 60% compared with preindustrial times). Thus, keystone predators can mediate the ways in which climate effects emerge in nature and the pace with which they alter ecosystems.

Science

Nutrient cycling, connectivity, and free-floating plant abundance in backwater lakes of the Upper Mississippi River

River eutrophication may cause the formation of dense surface mats of free floating plants (FFP; e.g., duckweeds and filamentous algae) which may adversely affect the ecosystem. We investigated associations among hydraulic connectivity to the channel, nutrient cycling, FFP, submersed aquatic vegetation (SAV), and dissolved oxygen concentration (DO) in ten backwater lakes of the Upper Mississippi River (UMR) that varied in connectivity to the channel. Greater connectivity was associated with higher water column nitrate (NO3-N) concentration, higher rates of sediment phosphorus (P) release, and higher rates of NO3-N flux to the sediments. Rates of sediment P and N (as NH4-N) release were similar to those of eutrophic lakes. Water column nutrient concentrations were high, and FFP tissue was nutrient rich suggesting that the eutrophic condition of the UMR often facilitated abundant FFP. However, tissue nutrient concentrations, and the associations between FFP biomass and water column nutrient concentrations, suggested that nutrients constrained FFP abundance at some sites. FFP abundance was positively associated with SAV abundance and negatively associated with dissolved oxygen concentration. These results illustrate important connections among hydraulic connectivity, nutrient cycling, FFP, SAV, and DO in the backwaters of a large, floodplain river.

Upper Mississippi River

Metabolic capability and phylogenetic diversity of Mono Lake during a bloom of the eukaryotic phototroph Picocystis sp. strain ML

Algal blooms in lakes are often associated with anthropogenic eutrophication; however, they can occur without the human introduction of nutrients to a lake. A rare bloom of the alga Picocystis sp. strain ML occurred in the spring of 2016 at Mono Lake, a hyperalkaline lake in California, which was also at the apex of a multiyear-long drought. These conditions presented a unique sampling opportunity to investigate microbiological dynamics and potential metabolic function during an intense natural algal bloom. We conducted a comprehensive molecular analysis along a depth transect near the center of the lake from the surface to a depth of 25 m in June 2016. Across sampled depths, rRNA gene sequencing revealed that Picocystis -associated chloroplasts were found at 40 to 50% relative abundance, greater than values recorded previously. Despite high relative abundances of the photosynthetic oxygenic algal genus Picocystis , oxygen declined below detectable limits below a depth of 15 m, corresponding with an increase in microorganisms known to be anaerobic. In contrast to previously sampled years, both metagenomic and metatranscriptomic data suggested a depletion of anaerobic sulfate-reducing microorganisms throughout the lake's water column. Transcripts associated with photosystem I and II were expressed at both 2 m and 25 m, suggesting that limited oxygen production could occur at extremely low light levels at depth within the lake. Blooms of Picocystis appear to correspond with a loss of microbial activity such as sulfate reduction within Mono Lake, yet microorganisms may survive within the sediment to repopulate the lake water column as the bloom subsides.

California

Draft genome sequence of Picocystis strain ML cultivated from Mono Lake, California

The microscopic alga Picocystis sp. strain ML is responsible for recurrent algal blooms in Mono Lake, CA. This organism was characterized by only very little molecular data, despite its prominence as a primary producer in saline environments. Here, we report the draft genome sequence for Picocystis sp. strain ML based on long-read sequencing.

California

Geology of Kapingamarangi Atoll, Caroline Islands

Kapingamarangi Atoll of the Caroline Islands consists of a peripheral reef, 1000-4000 feet across, surrounding a nearly circular lagoon which is 5 by 6 nautical miles in area and about 240 feet at maximum depth. Thirty-three islands, most of which are less than half a mile in length, are scattered along the eastern half of the peripheral reef. At least 75 patch reefs, most of which are small, nearly symmetrical mounds, rise to the surface of the lagoon. The peripheral reef and the patch reefs, composed largely of the stony structures of corals and coralline algae, have flat upper surfaces, apparently the result of bevelling by waves during a recent lowering of sea level. The islands on the peripheral reef are formed of partially consolidated stratified sediments composed of clastic limestone particles and the shells of marine animals. These islands are migrating lagoonward across the reef flat because of erosion on the seaward sides and the growth of beaches and bars on the opposite sides. Soils on the islands are poorly developed and retain much of the texture, structure, and composition of the parent rock or sediment. They consist chiefly of mechanical mixtures of carbonaceous material and lime gravel, lime sand, or lime mud. Phosphorite is present on some islands and is still forming locally where apatite derived from bird guano is reacting with limestones. The tidal fluctuation of ground-water lenses, determined on islands of several sizes, ranges from about 4 to 18 inches. In one very small island where the water is brackish, the rise is much greater. The time lag between tidal movements and the rise and fall of fresh water in the islands ranges from a few minutes on very small islands up to 5 hours on some large ones. This time lag is controlled by the permeability of rocks composing an island and varies from one area to another according to the distribution of rock types. The lagoon contains six concentric belts of bottom sediment; in each, the composition and texture depend on the depth of water in which it occurs. Lime sand and lime gravel derived for the most part from the shells of animals form most of the sediment, but a lime mud covers the bottom of the deepest parts of the lagoon. Waves and currents cause gradation between types of sediment to a depth of about 30 feet, but little mixing was detected at greater depths.

Kapingamarangi Atoll, Caroline Islands

Shimada Seamount: An example of recent mid-plate volcanism

Shimada Seamount is an isolated volcanic feature located between the Clipperton and Clarion Fracture Zones ∼1,150 km west of the East Pacific Rise and ∼600 km west of the inactive spreading center represented by the Mathematician Seamounts. It rises ∼3,900 m above the surrounding sea floor to within 50 m of present-day sea level. The area of Shimada Seamount should be volcanically dormant, because it is far from an active spreading center and is located on oceanic crust of early Miocene age. Nevertheless, evidence was found that Shimada Seamount has formed geologically recently. For example, seismic-reflection profiles-indicate that virtually no sediment has accumulated on the summit or flanks of the seamount; television, still-camera, and dredge-haul data indicate that a platform near the summit at a water depth of ∼180 m is a carbonate build-up formed by coralline red algae attached to fresh pillow basalt. Glassy pillow basalt too young to date by the K/Ar method and showing little or no devitrification and lacking manganese encrustations was dredged from the seamount below the algal reefs (500–750 m). Several cores taken from the adjacent basin (∼3,900 m deep) contain fresh glassy basalt detritus, and one core sampled a thin flow of unaltered basaltic glass at the sediment surface. The origin and history of Shimada Seamount differ importantly from volcanoes generally thought to form at spreading centers, along transform faults, or at hot spots. The existence of Shimada Seamount, therefore, has implications about tectonic processes that occur in interplate regions.

GSA Bulletin

Endolith microborings and their preservation in Holocene-Pleistocene (Bahama-Florida) ooids

Holocene ooids from Joulters Ooid Shoal (Bahamas) are bored in various ways by blue-green algae that groove along the grain surface, reside just beneath the grain surface, and tunnel extensively a few tens of microns within the grain. The microborings, morphologically distinctive, are documented with scanning electron micrographs of open borings and resin casts. Gentle dissolution of ooid aragonite permits identification of several algal genera by light microscopy and enables comparison with the microboring casts. Pleistocene ooids from the Miami Limestone (Florida) contain natural casts of microborings, some of which are similar in form to Holocene examples. Significantly, these aragonite casts are more resistant to solution than surrounding ooid aragonite. They remain after most of the ooid is leached away and survive replacement of the ooid by low-Mg calcite. Dissolution or precipitation may occur along the walls of microborings, causing morphological alteration during their preservation. This points out a difficulty in the specific identification of endoliths on the basis of fossilized microborings in ancient rocks composed of original aragonite grains.

Florida

Age of -360-m reef terrace, Hawaii, and the rate of late Pleistocene subsidence of the island

Observations from a manned submersible vehicle indicate that the −360-m reef terrace northwest of the island of Hawaii is a drowned coral reef. The preferred uranium-series age of coralline algae collected from the reef face is 120 ± 5 ka. This age agrees with the notion that the reef was drowned during the sea-level rise following the major lowstand of the sea that occurred at 145 ka (oxygen isotope stage 6). This drowning pattern is similar to the previously determined radiocarbon age of 13 ka for drowning of the −150-m reef off west Hawaii, which drowned during the sea-level rise following the last major lowstand of the sea at 18 ka (oxygen isotope stage 2). Estimated average subsidence of the reef site off northwest Hawaii is 2.7 mm/yr since final drowning of the −360-m reef.

Hawaii

History of the Redwall Limestone of northern Arizona

Throughout most of northern Arizona the Redwall Limestone of Mississippian age is readily divisible into four lithologic units, designated in ascending order as the Whitmore Wash, Thunder Springs, Mooney Falls, and Horseshoe Mesa Members. The first and third members are thick-bedded to massive carbonate rock. The Horseshoe Mesa Member is relatively thin-bedded limestone, and the Thunder Springs Member is distinctive because it consists of chert beds alternating with thin beds of carbonate rock. Trends in thickness of the various members indicate that the sediment that formed the Redwall was deposited on an even, gently sloping shelf that extended westward from the Defiance positive element, a low landmass located near the present eastern border of northern Arizona. The Peach Springs and Payson ridges projected west and southwest, respectively, from the positive element. These ridges, which were partly submerged and partly above sea level during Mississippian time, are indicated by the patterns of isopach lines and, in part, by the distribution of faunas. The ridges divided the Arizona section of the shelf into three segments: the northern-most, which slopes northwest toward the Cordilleran geosyncline, and the other two, which slope toward the south and southwest. Two transgressions and two regressions of the western and southern seaways are believed to be represented by the Redwall. The first transgression, which is recorded by thick beds of clastic sediment of the Whitmore Wash Member, was less extensive than the second, which is recorded by massive beds of the Mooney Falls Member, for on the western margins of the Defiance positive element the Mooney Falls Member overlaps the two lower members. Furthermore, south of Grand Canyon the Whitmore Wash and Thunder Springs Members lap against the Payson ridge without covering it, whereas the Mooney Falls Member, although relatively thin, extends across it. Regression is believed to be represented by thin beds of the Thunder Springs and Horseshoe Mesa Members, which are interpreted to be the result of low base level caused by silting up with clastic material and consequent retreat of the sea. Cycles in sedimentation are well developed in some parts of the Redwall, especially in the upper two members in which differences in grain size represent five major cycles recognized throughout the extent of the Grand Canyon. These textural differences, ranging from aphanitic to coarse grained, are considered to be not measures of the amount of transportation, as with terrigenous sediments, but reflections of the degree of turbulence or the lack of turbulence during deposition. They are interpreted as indicators of cyclic fluctuations in environment, probably related to changes in wave base. Several clearly defined facies within the Redwall indicate environments of deposition. The clastic limestone that forms a major part of the formation, especially in the offshore areas to the west and south, is believed to represent normal marine conditions where circulation was good and turbulence moderate to strong. Uniform finely crystalline dolomite probably developed through early diagenetic processes on the sea floor. On the basis of its distribution pattern the dolomite seems to have formed under shoal conditions, especially where it borders the shore of the Defiance positive element and along Peach Springs ridge. Oölitic limestone at the top of both major transgressive units is interpreted as reflecting the oscillatory conditions of sea level that provided wave and current agitation at times of maximum sea advance in shoal areas bordering the ridges. Aphanitic limestone, representing accumulations of lime mud, seems to be developed best in the uppermost, or Horseshoe Mesa, member, where, as the seas regressed, nearshore waters may have been isolated and certainly were very calm. Original textures and some structures are preserved in most limestones of the Redwall, and they give much evidence concerning oceanographic factors of the time. Generalizations have been developed concerning the character of the bottom, degrees of energy represented, depth, salinity, and other factors for various parts of the formation. Although these factors differed greatly with time and space, the general conclusions reached are that (1) depths were very shallow to moderate, (2) the sea floor was composed nearly entirely of lime mud and lime sand, which contained no terrigeneous material but with great crinoidal accumulations locally, (3) turbulence ranged from considerable to none, and (4) the sea was clear and warm and nowhere contained saline concentrations sufficient to form evaporites. Chert forming thin irregular beds, locally lenticular and nodular, occurs at two prinicpal positions in the stratigraphic section, and in each it alternates with thin beds of carbonate rock. Chert is prominent throughout the Thunder Springs Member and forms thin but definite zones near the top of the Mooney Falls Member. This chert is believed to have formed on the sea floor during early diagenesis, as evidenced by petrography, paleogeography, and faunal relations. Regional differences in the abundance and type of associated fossils, recorded on a series of 4-foot-square sample plots made throughout the Grand Canyon, suggest a probable relation between fossil distribution and genesis of the chert. The fauna of the Redwall is abundant and varied, but preservation in many places is poor, and numerous specimens can be collected only locally. The most common fossils are brachiopods, corals, foraminifers, and crinoids, but blastoids, gastropods, cephalopods, and pelecypods are not rare. Bryozoans are abundant in the chert of the Thunder Springs Member but uncommon elsewhere. Other organisms locally distributed but not common are algae, trilobites, fish, holothurians, and ostracodes. These groups have been studied by specialists and are the subject of Chapters V through XIII. Certain of the faunal groups, notably the corals and foraminifers, show some degree of vertical zoning and so have furnished important data on age and correlation. Among the corals, the zones of Dorlodotia inconstans and Michelinia expansa are especially significant because of their persistence from section to section across broad areas. The foraminiferal zones are broader and less sharply defined, but they represent a series of major changes in species from bottom to top of the formation. Age determination made on the basis of foraminifers and brachiopods indicate that the base of the Redwall is progressively younger as it passes from areas that were offshore eastward or northward toward the Defiance positive element; the top of the Redwall, in contrast, is shown to be progressively younger away from the positive element. Thus basal beds of Kinderhook age are recognized at Grand Wash, Quartermaster, and Meriwitica Canyons to the northwest, but the lowest strata are of Osage age at Bridge Canyon, Grandview, and other sections closer to the landmass. Likewise, units with fossils of middle Meramec age occur in western Grand Canyon, but, except in the one place discussed in the following paragraph, topmost beds farther east in Grand Canyon are of Osage age. South of Grand Canyon the youngest member of the Redwall (Horseshoe Mesa) has been removed by pre-Supai Formation erosion. Rocks still younger than the Horseshoe Mesa once may have covered the entire region, possibly representing a third sequence of transgression and regression. At Bright Angel trail in eastern Grand Canyon, for example, a unique unit at the top of the Redwall section contains fossils of Chester age and apparently represents a remnant of Late Mississippian rocks that survived as an inlier there.

Arizona

Effects of a diatom ecosystem engineer (Didymosphenia geminata) on stream food webs: Implications for native fishes

Stream habitat changes affecting primary consumers often indirectly impact secondary consumers such as fishes. Blooms of the benthic algae Didymosphenia geminata (Didymo) are known to affect stream macroinvertebrates, but the potential indirect trophic impacts on fish consumers are poorly understood. In streams of the Kootenai River basin, we quantified the diet, condition, and growth rate of species of trout, char, and sculpin. In 2018, macroinvertebrate taxa composition was different between a stream with Didymo and a stream without, but trout diets, energy demand, and growth rates were similar. Trout abundance was higher in the stream with Didymo, but the amount of drifting invertebrates was higher in the stream without. In 2019, we surveyed 28 streams with a gradient of coverage. Didymo abundance was correlated only with the percentage of aquatic invertebrates in trout diets and was not related to diets of char or sculpin or condition of any species. Thus, we found no evidence for a trophic link between Didymo blooms and the condition or growth of trout, char, or sculpin in mountainous headwater streams.

Alberta, British Columbia, Idaho, Montana

Suspension freezing of bottom sediment and biota in the Northwest Passage and implications for Arctic Ocean sedimentation

Ice observations and sediment collected in a summer transit through the Northwest Passage provide insights on suspension freezing, the most important sediment entrainment mechanism for the Arctic Ocean. No evidence was seen for entrainment by bottom adfreezing, bluff slumping, river flooding, dragging ice keels, or significant eolian transport from land to sea. Lack of eolian sediment loading in the Northwest Passage, together with that already reported for northern Alaska, eliminates wind as an important source for fine sediment in the pack of the Beaufort Gyre and related parts of the Transpolar Drift. Muddy sediment with pebbles and cobbles, algae with holdfasts, ostracodes with appendages, and well-preserved mollusks and sea urchins were collected from two sites in a 50 km long stretch of turbid ice. These materials indicate that suspension freezing reaching to a water depth of 25–30 m during the previous fall was responsible for entrainment. This mechanism requires rapid ice formation in open, shallow water during a freezing storm, when the ocean becomes supercooled, and frazil and anchor ice attach to and ultimately lift sediment and living organisms to the sea surface. The mechanism, already known to be important in the Beaufort Sea, probably also affects wide, shallow Siberian shelves and leads to cross-shelf transport of shallow-water organisms and dropstones with "glacial striations" toward deep basins. This makes distinguishing glacial–interglacial cycles more difficult.

Nunavut

Effects of disturbance on contribution of energy sources to growth of juvenile chinook salmon (Oncorhynchus tshawytscha) in boreal streams

We used stable isotopes of carbon in a growth-dependent tissue-turnover model to quantify the relative contribution of autochthonous and terrestrial energy sources to juvenile chinook salmon (Oncorhynchus tshawytscha) in five small boreal streams tributary to the upper Yukon River. We used a tissue-turnover model because fish did not grow enough to come into isotopic equilibrium with their diet. In two streams, autochthonous energy sources contributed 23 and 41% to the growth of juvenile salmon. In the other three, fish growth was largely due to terrestrial (i.e., allochthonous) energy sources. This low contribution of autochthonous energy appeared to be related to stream-specific disturbances: a recent forest fire impacted two of the streams and the third was affected by a large midsummer spate during the study. These disturbances reduced the relative abundance of herbivorous macroinvertebrates, the contribution of autochthonous material to other invertebrates, and ultimately, the energy flow between stream algae and fish. Our findings suggest that disturbances to streams can be an important mechanism affecting transfer of primary energy sources to higher trophic levels.

Canadian Journal of Fisheries and Aquatic Sciences

Phosphate and iron limitation of phytoplankton biomass in Lake Tahoe

Bioassays were carried out to assess the response of inoculated, single-species diatom populations (Cyclotella meneghiniana and Aulocosiera italica) to additions of synthetic chelators and phosphate. A chemical speciation model along with the field data was also used to predict how trace metal speciation, and hence bioavailability, was affected by the chelator additions. Results suggest that phosphate was limiting to phytoplankton biomass. Other solutes, Fe in particular, may also exert controls on biomass. Nitrate limitation seems less likely, although Fe-limiting conditions may have led to an effective N limitation because algae require Fe to carry out nitrate reduction. -from Authors

Canadian Journal of Fisheries and Aquatic Sciences