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USGS2002

Pharmaceuticals, hormones, and other organic wastewater contaminants in U.S. streams, 1999-2000: A national reconnaissance

To provide the first nationwide reconnaissance of the occurrence of pharmaceuticals, hormones, and other organic wastewater contaminants (OWCs) in water resources, the U.S. Geological Survey used five newly developed analytical methods to measure concentrations of 95 OWCs in water samples from a network of 139 streams across 30 states during 1999 and 2000. The selection of sampling sites was biased toward streams susceptible to contamination (i.e. downstream of intense urbanization and livestock production). OWCs were prevalent during this study, being found in 80% of the streams sampled. The compounds detected represent a wide range of residential, industrial, and agricultural origins and uses with 82 of the 95 OWCs being found during this study. The most frequently detected compounds were coprostanol (fecal steroid), cholesterol (plant and animal steroid), N , N -diethyltoluamide (insect repellant), caffeine (stimulant), triclosan (antimicrobial disinfectant), tri(2-chloroethyl)phosphate (fire retardant), and 4-nonylphenol (nonionic detergent metabolite). Measured concentrations for this study were generally low and rarely exceeded drinking-water guidelines, drinking-water health advisories, or aquatic-life criteria. Many compounds, however, do not have such guidelines established. The detection of multiple OWCs was common for this study, with a median of seven and as many as 38 OWCs being found in a given water sample. Little is known about the potential interactive effects (such as synergistic or antagonistic toxicity) that may occur from complex mixtures of OWCs in the environment. In addition, results of this study demonstrate the importance of obtaining data on metabolites to fully understand not only the fate and transport of OWCs in the hydrologic system but also their ultimate overall effect on human health and the environment.

Environmental Science & Technology↗

USGS1998

Declining ring-necked pheasants in the Klamath Basin, California: I. Insecticide exposure

A study of organophosphorus (OP) insecticide exposure was conducted on a declining population of ring-necked pheasants (Phasianus colchicus) associated with agricultural lands at Tule Lake National Wildlife Refuge (TLNWR) during the summers of 1990–92. Findings at TLNWR were compared with a nearby pheasant population at Lower Klamath National Wildlife Refuge (LKNWR) not subjected to intensive farming or OP insecticide applications. Direct toxicity of anticholinesterase (antiChE) compounds (in this case methamidophos) killed 2 young pheasants (91 and 92% brain acetylcholinesterase [AChE] inhibition), but no deaths of adult radio-equipped hens were ascribed to direct insecticide intoxication. However, within 20 days postspray of OP insecticides, 68% (28 of 41) of the adult pheasants collected at TLNWR were exposed to antiChE insecticides, and exhibited brain AChE inhibition of 19–62%, with 15% (6 of 41) showing >55% brain AChE inhibition. The lack of radio-equipped hens dying was unexpected because >50% brain AChE inhibition has been frequently used as a ‘diagnostic tool’ for evaluating cause of death from antiChE insecticides. No young were radio-equipped, so the extent of the effects of insecticide exposure on the survivorship of young was unknown. It is concluded that insecticide exposure was not the major factor impacting the pheasant population (see Grove et al., in press), although some young were acutely intoxicated. However, the loss of insects killed by insecticide use may have contributed to food shortages of young pheasants, indirectly influencing survival.

California↗

USGS2002

Seed chemistry of Sophora chrysophylla (mamane) in relation to diet of specialist avian seed predator Loxioides bailleui (palila) in Hawaii

This study describes the chemical ecology of a tritrophic interaction among species endemic to the island of Hawaii, USA: a tree (Sophora chrysophylla: mamane), an endangered bird (Loxioides bailleui; palila), and moth larvae (Cydia spp.). Palila and Cydia both specialize on the seed embryos of mamane but avoid eating the seed coats. Palila actively seek out and feed mamane embryos and Cydia larvae to their nestlings. Because mamane embryos contain potentially toxic levels of alkaloids, including broadly toxic quinolizidine alkaloids, and because insects often sequester alkaloids from their food plants, we focus on the questions of why palila forage upon mamane embryos and why they supplement their diet with Cydia larvae. Our data show that mamane embryos contain high amounts of potentially toxic alkaloids, but are well balanced nutritionally and contain lipids, carbohydrates, proteins, amino acids, and minerals at levels that are likely to be sufficient for maintenance and breeding. Mamane seed coats contain lower levels of alkaloids and nutrients, somewhat higher levels of phenolics, and much higher levels of nondigestible fiber. Taken together, these results suggest that palila have evolved tolerance to high levels of alkaloids and that they forage upon embryos primarily because of their availability in the habitat and high nutritional reward. Our data also suggest that Cydia are used by palila because they are readily accessible, nontoxic, and nutritious; the larvae apparently do not sequester alkaloids while feeding upon mamane seeds. Our results are interpreted with respect to the likelihood of current and historical coadaptive responses in this ecologically isolated and simplified island setting.

Journal of Chemical Ecology↗

USGS2003

A longitudinal assessment of the aquatic macroinvertebrate community in the channelized lower Missouri River

We conducted an aquatic macroinvertebrate assessment in the channelized reach of the lower Missouri River, and used statistical analysis of individual metrics and multimetric scores to identify community response patterns and evaluate relative biological condition. We examined longitudinal site differences that are potentially associated with water qualityrelated factors originating from the Kansas City metropolitan area, using data from coarse rock substrate in flowing water habitats (outside river bends), and depositional mud substratein slack water habitats (dike fields). Three sites above rivermile (RM) 369 in Kansas City (Nebraska City, RM = 560; St. Joseph, RM = 530; Parkville, RM = 377) and three below (Lexington, RM = 319; Glasgow, RM = 228; Hermann, RM = 94) were sampled with rock basket artificial substrates, a qualitative kicknet method, and the Petite Ponar. We also compared the performance of the methods used. A total of 132 aquatic macroinvertebrate taxa were collected from the lower Missouri River; one third of these taxa belonged to the sensitiveEPOT insect orders (Ephemeroptera, Plecoptera, Odonata, and Trichoptera). Rock baskets had the highest mean efficiency (34.1%) of the methods, and the largest number of taxa was collected by Ponar (n = 69) and kicknet (n = 69) methods. Seven of the 15 metrics calculated from rock basket data, and five ofthe nine metrics calculated from Ponar data showed highly significant differences (ANOVA, P < 0.001) at one or more sitesbelow Kansas City. We observed a substantial reduction in net-spinning Trichoptera in rock habitats below Kansas City (Lexington), an increase in relative dominance of Oligochaeta in depositional habitats at the next site downstream (Glasgow), and lower relative condition scores in rock habitat at Lexingtonand depositional habitat at Glasgow. Collectively, these data indicate that some urban-related impacts on the aquatic macroinvertebrate community are occurring. Our results suggest that the methods and assessment framework we used in this studycould be successfully applied on a larger scale with concurrentwater and sediment chemistry to validate metrics, establish impairment levels, and develop a specific macroinvertebrate community index for the lower Missouri River. We recommend accomplishing this with longitudinal multi-habitat sampling at a larger number of sites related to all potential sources of impairment, including major tributaries, urban areas, and point sources.

Environmental Monitoring and Assessment↗

USGS2003

Health risks of gold miners: a synoptic review

Health problems of gold miners who worked underground include decreased life expectancy; increased frequency of cancer of the trachea, bronchus, lung, stomach, and liver; increased frequency of pulmonary tuberculosis (PTB), silicosis, and pleural diseases; increased frequency of insect-borne diseases, such as malaria and dengue fever; noise-induced hearing loss; increased prevalence of certain bacterial and viral diseases; and diseases of the blood, skin, and musculoskeletal system. These problems are briefly documented in gold miners from Australia, North America, South America, and Africa. In general, HIV infection or excessive alcohol and tobacco consumption tended to exacerbate existing health problems. Miners who used elemental mercury to amalgamate and extract gold were heavily contaminated with mercury. Among individuals exposed occupationally, concentrations of mercury in their air, fish diet, hair, urine, blood, and other tissues significantly exceeded all criteria proposed by various national and international regulatory agencies for protection of human health. However, large-scale epidemiological evidence of severe mercury-associated health problems in this cohort was not demonstrable.

Environmental Geochemistry and Health↗

USGS2003

Influence of eastern hemlock (Tsuga canadensis L.) on fish community structure and function in headwater streams of the Delaware River basin

Hemlock (Tsuga canadensis) forest of the eastern U.S. are in decline due to invasion by the exotic insect hemlock woolly adelgid (Adelges tsugae). Aquatic biodiversity in hemlock ecosystems has not been documented; thus the true impact of the infestation cannot be assessed. We compared ichthyofaunal assemblages and trophic structure of streams draining hemlock and hardwood forests by sampling first- and second-order streams draining 14 paired hemlock and hardwood stands during base flows in July 1997 at the Delaware Water Gap National Recreation Area of Pennsylvania and New Jersey. Over 1400 fish of 15 species and 7 families were collected, but hemlock and hardwood streams individually harbored only one to four species. Brook trout (Salvelinus fontinalis) and brown trout (Salmo trutta) were two to three times as prevalent in hemlock than hardwood streams. Insectivorous fishes occurred in significantly higher proportion in streams of hardwood (0.90) than hemlock (0.46) stands, while piscivores occurred more often in hemlock (0.85) than hardwood (0.54) stands. Functional (trophic) diversity of fishes in hemlock and second-order streams was numerically greater than that of hardwood and first-order streams. Species composition also differed by stream order and terrain type. Biodiversity is threatened at several levels within hemlock ecosystems at risk to the hemlock woolly adelgid in eastern U.S. forests.

Ecology of Freshwater Fish↗

USGS2014

Hydrological effects of forest transpiration loss in bark beetle-impacted watersheds

The recent climate-exacerbated mountain pine beetle infestation in the Rocky Mountains of North America has resulted in tree death that is unprecedented in recorded history. The spatial and temporal heterogeneity inherent in insect infestation creates a complex and often unpredictable watershed response, influencing the primary storage and flow components of the hydrologic cycle. Despite the increased vulnerability of forested ecosystems under changing climate 1 , watershed-scale implications of interception, ground evaporation, and transpiration changes remain relatively unknown, with conflicting reports of streamflow perturbations across regions. Here, contributions to streamflow are analysed through time and space to investigate the potential for increased groundwater inputs resulting from hydrologic change after infestation. Results demonstrate that fractional late-summer groundwater contributions from impacted watersheds are 30 ± 15% greater after infestation and when compared with a neighbouring watershed that experienced earlier and less-severe attack, albeit uncertainty propagations through time and space are considerable. Water budget analysis confirms that transpiration loss resulting from beetle kill can account for the relative increase in groundwater contributions to streams, often considered the sustainable flow fraction and critical to mountain water supplies and ecosystems.

Colorado↗

USGS2018

A diverse suite of pharmaceuticals contaminates stream and riparian food webs

A multitude of biologically active pharmaceuticals contaminate surface waters globally, yet their presence in aquatic food webs remain largely unknown. Here, we show that over 60 pharmaceutical compounds can be detected in aquatic invertebrates and riparian spiders in six streams near Melbourne, Australia. Similar concentrations in aquatic invertebrate larvae and riparian predators suggest direct trophic transfer via emerging adult insects to riparian predators that consume them. As representative vertebrate predators feeding on aquatic invertebrates, platypus and brown trout could consume some drug classes such as antidepressants at as much as one-half of a recommended therapeutic dose for humans based on their estimated prey consumption rates, yet the consequences for fish and wildlife of this chronic exposure are unknown. Overall, this work highlights the potential exposure of aquatic and riparian biota to a diverse array of pharmaceuticals, resulting in exposures to some drugs that are comparable to human dosages.

Nature Communications↗

USGS2019

Fire, climate and changing forests

A changing climate implies potential transformations in plant demography, communities, and disturbances such as wildfire and insect outbreaks. How do these dynamics play out in terrestrial ecosystems across scales of space and time? “Vegetation type conversion” (VTC) is a term used to describe abrupt and long-lasting changes in vegetation structure and composition due to various kinds of perturbations. For example, it has long been observed that fire-adapted ecosystems such as the California chaparral shrublands are readily replaced by non-native annual grasses when humans increase fire frequency. Similar effects are being observed in Sonoran Desert plant communities, where invasion by non-native buffelgrass (Cenchrus ciliare) exposes a fire-sensitive plant community to high-intensity fires, which are lethal to the long-lived iconic Sonoran flora such as Saguaro cactus (Carnegiea gigantea). While type conversions following severe disturbance have been observed for some time, the mechanisms that underlay such changes are only recently coming to light. Threshold behavior is of particular concern: as various climate indices pass critical values, some ecosystems may be reaching points of no return where recovery to the earlier state is no longer possible. A recent publication in the Proceedings of the National Academy of Sciences, U.S., has now revealed that increased fire severity impairs post-fire forest regeneration, setting the stage for potential large-scale type conversion of western conifer forests.

Nature Plants↗

USGS2020

Mast seeding patterns are asynchronous at a continental scale

Resource pulses are short duration, high magnitude, rare events that drive the dynamics of both plant and animal populations and communities1. Mast seeding is perhaps the most common type of resource pulse occurring in terrestrial ecosystems2, is characterized by the synchronous and highly variable production of seed crops by a population of perennial plants3,4, and is widespread both taxonomically and geographically5. The rare production of abundant seed crops (‘mast events’) that are orders of magnitude higher than in low seed years lead to high reproductive success in seed consumers, and has cascading impacts in ecosystems2,6. While it is suggested that mast seeding is synchronized at continental scales7, studies are largely constrained to local areas covering 10-100’s of kilometers. Furthermore, summer temperature, which acts as a cue in mast seeding8, shows patterns at continental scales manifested as a juxtaposition of positive and negative anomalies that have been linked to irruptive movements of boreal seed eating birds9. Here we show a breakdown in synchrony of mast seeding patterns across space, leading to asynchrony at a continental scale. We found in an analysis of synchrony for a transcontinental North America tree species spanning distances >5,200 km that mast seeding patterns were significantly asynchronous at distances >2,000 km apart. Other studies have shown declines in synchrony across distance, but not asynchrony. Spatio-temporal variation in summer temperatures at the continental scale drives patterns of synchrony in mast seeding, and we anticipate this impacts the spatial dynamics of numerous seed-eating communities, from insects to small mammals to the large-scale migration patterns of boreal seed eating birds.

Nature Plants↗

USGS2024

A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables

Microbial breakdown of organic matter is one of the most important processes on Earth, yet the controls of decomposition are poorly understood. Here we track 36 terrestrial human cadavers in three locations and show that a phylogenetically distinct, interdomain microbial network assembles during decomposition despite selection effects of location, climate and season. We generated a metagenome-assembled genome library from cadaver-associated soils and integrated it with metabolomics data to identify links between taxonomy and function. This universal network of microbial decomposers is characterized by cross-feeding to metabolize labile decomposition products. The key bacterial and fungal decomposers are rare across non-decomposition environments and appear unique to the breakdown of terrestrial decaying flesh, including humans, swine, mice and cattle, with insects as likely important vectors for dispersal. The observed lockstep of microbial interactions further underlies a robust microbial forensic tool with the potential to aid predictions of the time since death.

Nature Microbiology↗

USGS2020

The Fire and Tree Mortality Database, for empirical modeling of individual tree mortality after fire

Wildland fires have a multitude of ecological effects in forests, woodlands, and savannas across the globe. A major focus of past research has been on tree mortality from fire, as trees provide a vast range of biological services. We assembled a database of individual-tree records from prescribed fires and wildfires in the United States. The Fire and Tree Mortality (FTM) database includes records from 164,293 individual trees with records of fire injury (crown scorch, bole char, etc.), tree diameter, and either mortality or top-kill up to ten years post-fire. Data span 142 species and 62 genera, from 409 fires occurring from 1981-2016. Additional variables such as insect attack are included when available. The FTM database can be used to evaluate individual fire-caused mortality models for pre-fire planning and post-fire decision support, to develop improved models, and to explore general patterns of individual fire-induced tree death. The database can also be used to identify knowledge gaps that could be addressed in future research.

Scientific Data↗

USGS2024

A decade-long study demonstrates that a population of invasive sea lamprey (Petromyzon marinus) can be controlled by introducing sterilized males

The release of sterilized insects to control pest populations has been used successfully during the past 6 decades, but application of the method in vertebrates has largely been overlooked or met with failure. Here, we demonstrate for the first time in fish, that a small population of sea lamprey ( Petromyzon marinus ; Class Agnatha), arguably one of the most impactful invasive fish in the world, can be controlled by the release of sterilized males. Specifically, the release of high numbers of sterile males (~ 1000's) into a geographically isolated population of adult sea lamprey resulted in the first multiyear delay in pesticide treatment since treatments began during 1966. Estimates of percent reduction in recruitment of age-1 sea lamprey due to sterile male release ranged from 7 to 99.9% with the precision of the estimate being low because of substantial year-to-year variability in larval density and distribution. Additional monitoring that accounts for recruitment variability in time and space would reduce uncertainty in the degree to which sterile male release reduces recruitment rates. The results are relevant to vertebrate pest control programs worldwide, especially as technical opportunities to sterilize vertebrates and manipulate sex ratios expand.

Michigan↗

USGS2024

Multistage time-to-event models improve survival inference by partitioning mortality processes of tracked organisms

Advances in tagging technologies are expanding opportunities to estimate survival of fish and wildlife populations. Yet, capture and handling effects could impact survival outcomes and bias inference about natural mortality processes. We developed a multistage time-to-event model that can partition the survival process into sequential phases that reflect the tagged animal experience, including handling and release mortality, post-release recovery mortality, and subsequently, natural mortality. We demonstrate performance of multistage survival models through simulation testing and through fish and bird telemetry case studies. Models are implemented in a Bayesian framework and can accommodate left, right, and interval censorship events. Our results indicate that accurate survival estimates can be achieved with reasonable sample sizes ( n ≈ 100 + ) "> 𝑛≈100+) and that multimodel inference can inform hypotheses about the configuration and length of survival stages needed to adequately describe mortality processes for tracked specimens. While we focus on survival estimation for tagged fish and wildlife populations, multistage time-to-event models could be used to understand other phenomena of interest such as migration, reproduction, or disease events across a range of taxa including plants and insects.

Scientific Reports↗

USGS2026

Society’s struggle with unwanted species: What centuries of history reveal about species bounty programs

Species bounty programs, much like bounty hunters charged to bring fugitives to justice, enlist the public to locate and remove unwanted species through financial incentives. With the goal of reducing population sizes, these programs address perceived ecological and economic damage caused by target species. In this study, we provide the first global assessment of species bounty programs, drawing on evidence from both historical and contemporary efforts across diverse regions and cultural contexts over the past eight centuries. We uncovered a long history of bounty programs involving at least 283 species—mammals, birds, fish, plants, reptiles, mollusks, insects, amphibians, and crustaceans—across 449 programs in 60 countries. Using this collective knowledge, we offer five perspectives on species bounty programs. First, bounty programs are launched for a variety of reasons, including economic (livestock, crops, fisheries, infrastructure), ecological (species, ecosystems), and social (human health) considerations related to unwanted species. Second, bounty programs vary in their design and implementation, ranging from well-planned operations with clear management and conservation objectives to ad hoc operations with limited articulation and investigation of project outcomes. Third, evidence points to unintended consequences, in which bounty programs result in the incidental removal of non-target species or in effects that may inadvertently benefit target species. Fourth, while not always the case, fraudulent activities have been reported, compromising the management outcomes of some programs. Fifth, public perception of bounty programs is highly dynamic and ensuring program engagement remains a persistent challenge. By reviewing the scattered narratives of past and present bounty programs globally, this review seeks to inform the evolving role of this management strategy.

npj Biodiversity↗

USGS2016

Quasi-extinction risk and population targets for the Eastern, migratory population of monarch butterflies ( Danaus plexippus )

The Eastern, migratory population of monarch butterflies ( Danaus plexippus) , an iconic North American insect, has declined by ~80% over the last decade. The monarch’s multi-generational migration between overwintering grounds in central Mexico and the summer breeding grounds in the northern U.S. and southern Canada is celebrated in all three countries and creates shared management responsibilities across North America. Here we present a novel Bayesian multivariate auto-regressive state-space model to assess quasi-extinction risk and aid in the establishment of a target population size for monarch conservation planning. We find that, given a range of plausible quasi-extinction thresholds, the population has a substantial probability of quasi-extinction, from 11–57% over 20 years, although uncertainty in these estimates is large. Exceptionally high population stochasticity, declining numbers, and a small current population size act in concert to drive this risk. An approximately 5-fold increase of the monarch population size (relative to the winter of 2014–15) is necessary to halve the current risk of quasi-extinction across all thresholds considered. Conserving the monarch migration thus requires active management to reverse population declines, and the establishment of an ambitious target population size goal to buffer against future environmentally driven variability.

Scientific Reports↗

USGS1999

Effects of fire retardant chemical and fire suppressant foam on shrub steppe vegetation in northern Nevada

The objectives of this study were to determine the effects of fire retardantchemical (Phos-Chek G75-F * ) and fire suppressant foam (Silv-Ex) application,alone and in combination with fire, on Great Basin shrub steppe vegetation. Wemeasured growth, resprouting, flowering, and incidence of galling insects on Chrysothamnus viscidiflorus and Artemisia tridentata . These characteristics were notaffected by any chemical treatment. We measured community characteristics,including species richness, evenness, and diversity, and number of stems ofwoody and herbaceous plants in riparian and upland plots. Of these characteristics, only species richness and number ofstems/m 2 clearly responded to the chemicaltreatments, and the response was modified by fire. In general, speciesrichness declined, especially after Phos-Chek application. However, by the endof the growing season, species richness did not differ between treated andcontrol plots. Acanonical variate analysis suggested that burning had agreater influence on community composition than did the chemical treatments.In general, riparian areas showed more significant responses to the treatmentsthan did upland areas, and June applications produced greater changes inspecies richness and stem density than did July applications.

International Journal of Wildland Fire↗

USGS2009

Transient dwarfism of soil fauna during the Paleocene-Eocene Thermal Maximum

Soil organisms, as recorded by trace fossils in paleosols of the Willwood Formation, Wyoming, show significant body-size reductions and increased abundances during the Paleocene-Eocene Thermal Maximum (PETM). Paleobotanical, paleopedologic, and oxygen isotope studies indicate high temperatures during the PETM and sharp declines in precipitation compared with late Paleocene estimates. Insect and oligochaete burrows increase in abundance during the PETM, suggesting longer periods of soil development and improved drainage conditions. Crayfish burrows and molluscan body fossils, abundant below and above the PETM interval, are significantly less abundant during the PETM, likely because of drier floodplain conditions and lower water tables. Burrow diameters of the most abundant ichnofossils are 30-46% smaller within the PETM interval. As burrow size is a proxy for body size, significant reductions in burrow diameter suggest that their tracemakers were smaller bodied. Smaller body sizes may have resulted from higher subsurface temperatures, lower soil moisture conditions, or nutritionally deficient vegetation in the high-CO 2 atmosphere inferred for the PETM. Smaller soil fauna co-occur with dwarf mammal taxa during the PETM; thus, a common forcing mechanism may have selected for small size in both above- and below-ground terrestrial communities. We predict that soil fauna have already shown reductions in size over the last 150 years of increased atmospheric CO 2 and surface temperatures or that they will exhibit this pattern over the next century. We retrodict also that soil fauna across the Permian-Triassic and Triassic-Jurassic boundary events show significant size decreases because of similar forcing mechanisms driven by rapid global warming.

Proceedings of the National Academy of Sciences of↗