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USGS2016

Documenting the use of the Long Term Resource Monitoring element’s fish monitoring methodologies throughout the Midwest

The Upper Mississippi River Restoration (UMRR) Program’s Long Term Resource Monitoring (LTRM) element is designed to monitor and assess long term trends in the Upper Mississippi River System (UMRS). To accomplish this, standardized methods are used that allow for comparisons across pools and rivers. In recent years, other projects and other agencies have adopted the LTRM fish methodologies for use outside the UMRR. To determine how widespread the use of the Fish Component’s methods are, a twelve question survey was delivered via SurveyMonkey.com through the states comprising the American Fisheries Society (AFS) North Central Division and the Upper Mississippi River Conservation Committee. Approximately 2,000 professionals were reached with ≈11 percent participating. Results indicate that nearly all (95 percent) respondents use standardized methods in their sampling and 48 percent are familiar with the LTRM fish methodologies. Roughly one-third (35 percent) of all respondents have used the methods in the past and most (78 percent) of those have modified the methods to suit the information needs specific to their fishery. Results indicate that the LTRM methods have indeed spread outside the UMRR and are now a well-known and potentially widely used technique to sample fish communities.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

USGS2018

Assessing wild juvenile trout ecology in the lower Mountain Fork

Reservoir tailwaters can be valuable fisheries for Rainbow Trout ( Oncorhynchus mykiss ), which is commonly stocked as mitigation for the altered habitat because it performs well as a put-and-take species in these thermally depressed systems. These fisheries are usually sustained by stocking due to flow fluctuations and lack of suitable spawning habitat that may limit natural reproduction. The Lower Mountain Fork River (LMFR) below Broken Bow Dam in southeastern Oklahoma is one of two year-round trout fisheries in the state and wild, juvenile Rainbow Trout were documented beginning in 2006, prompting speculation about the potential for a self-sustaining population. To determine this potential, we searched several sites over two years throughout the LMFR for wild, juvenile Rainbow Trout to estimate several parameters related to their population status (e.g., age, growth, time of spawning and hatching, and prey use). We also assessed the availability of macroinvertebrate prey to determine how food resources may affect trout sustainability. We found wild, juvenile Rainbow Trout each year, but only at sites within the first 4.5 km of the 19-km tailwater. Juvenile trout were the result of spawning that took place from late January through mid-April. Growth and body condition were variable between years, but similar to other systems. Weekly survival estimates using catch curves were low (<80%), suggesting limited potential for recruitment; however, declining catchability of larger juvenile fish likely biased these estimates. Wild, juvenile Rainbow Trout ate a variety of food items, but selected for Amphipoda and Diplostraca and against Trichoptera. Overlap in diet with adult Rainbow Trout was low (Bray-Curtis dissimilarity = 0.70). Macroinvertebrate prey resources available to trout varied among management zones, being most abundant in Zone 1 and Zone 3. Potential for a wild fishery may exist in the upper portion of the LMFR but additional research on recruitment to adulthood would be required to provide a more definitive answer.

Oklahoma↗

USGS2004

Cruise Report for G1-03-GM, USGS Gas Hydrates Cruise, R/V Gyre, 1-14 May 2003, Northern Gulf of Mexico

This report gives a summary of the field program and instrumentation used on the R/V Gyre in the Gulf of Mexico in May, 2003, to collect multichannel seismic data in support of USGS and Department of Energy gas hydrate studies. Tabulated statistics, metadata, figures and maps are included to show the breadth of data collected and preliminary interpretations made during the field program. Geophysical data collected during this cruise will be released in a separate report. At the start of the cruise, three test lines were run to compare different source configurations in order to optimize data quality for the objectives of the cruise. The source chosen was the 13/13 in3 Generator-Injector (GI) Gun. Following these tests, a total of 101 lines (approximately 1033 km) of 24-channel high-resolution seismic reflection data were collected in the northern Gulf of Mexico. 59 lines (about 600 km) were collected in and around lease block Keathley Canyon 195. An additional 4 lines (85 km) provided a seismic tie between the Keathley Canyon data and USGS multichannel data collected in 1999. About 253 km of data were collected along 35 short lines in and around lease block Atwater Valley 14 on the floor of the Mississippi Canyon. Three lines (53 km) completed the cruise and provided a seismic tie to USGS multichannel data collected in 1998. Two on-board trained marine-mammal observers fulfilled the requirements determined by NOAA/National Marine Fisheries Service to avoid incidental harassment of marine mammals as established in the Marine Mammal Protection Act (MMPA). A total of three species of dolphins were observed during the cruise and one basking shark. No sperm whales were sighted. During the cruise, seismic operations were not delayed or terminated because of marine mammal activity.

Open-File Report↗

USGS2020

North Atlantic right whale (Eubalaena glacialis) scenario planning summary report

Scenario planning provides a structured framework that can be used in strategic planning to help manage risk and prioritize actions (Schwartz 1996; Peterson et al. 2003). By providing a mechanism to communicate about complex situations, scenario planning encourages “out-of-the-box” thinking to help groups assess the impacts of plausible future scenarios on a target or resource. The outcomes from scenario planning can be used to improve management decisions, highlight data gaps, and/or identify future science priorities (Star et al. 2015; Borggaard et al. 2019). The application of scenario planning by resource management organizations (e.g., Borggaard et al. 2019; Runyon et al. 2020; Star et al. 2015) and the urgency surrounding the recovery of the critically endangered North Atlantic right whale (Eubalaena glacialis), led to a 2018 NOAA Fisheries scenario planning initiative for the species. In addition to complementing the many management and conservation efforts already underway, this initiative was designed to address the uncertainties around future anthropogenic and environmental changes and how these uncertainties may impact species recovery. We used a scenario planning framework to explore plausible future conditions for North Atlantic right whales and to develop possible options to address those conditions and improve recovery. Specific objectives were to: 1) better understand the challenges of right whale management in a changing climate; 2) identify potential research activities and recovery needs across the species’ range; 3) increase coordination and collaboration related to recovery efforts; and 4) explore how scenario planning can be used to support decisions. Using projected changes in ocean conditions coupled with anthropogenic stressors, we built four plausible future scenarios for right whales. These scenarios helped identify priority research and management actions that NOAA Fisheries and our partners can undertake to improve right whale recovery. We identified priority actions related to science, management, and partnerships including, but not limited to, 1) research on shifting spatial and temporal distributions of right whales and prey in a changing climate; 2) development of technology to further reduce impacts from human activities; 3) continuation of ongoing management efforts related to vessel traffic and fishing; and 4) continued maintenance of existing and development of new partnerships (e.g., industry engagement in problem solving). This scenario planning exercise helped prioritize North Atlantic right whale management and science needs in light of changing ocean conditions and anthropogenic impacts. It can also serve as a reference for how NOAA Fisheries and its partners can better prepare for multiple plausible futures while complementing other on-going initiatives. Priorities identified here can be considered in conjunction with implementation and monitoring actions such as with the Atlantic Large Whale Take Reduction Team (ALWTRT) and/or regional Right Whale U.S. Implementation Teams. The framework can also be repeated and improved upon as additional information becomes available to support future exercises.

Technical Memorandum↗

USGS2012

Development of a real-time PCR assay for detection of planktonic red king crab ( Paralithodes camtschaticus (Tilesius 1815)) larvae

The Alaskan red king crab ( Paralithodes camtschaticus ) fishery was once one of the most economically important single-species fisheries in the world, but is currently depressed. This fishery would benefit from improved stock assessment capabilities. Larval crab distribution is patchy temporally and spatially, requiring extensive sampling efforts to locate and track larval dispersal. Large-scale plankton surveys are generally cost prohibitive because of the effort required for collection and the time and taxonomic expertise required to sort samples to identify plankton individually via light microscopy. Here, we report the development of primers and a dual-labeled probe for use in a DNA-based real-time polymerase chain reaction assay targeting the red king crab, mitochondrial gene cytochrome oxidase I for the detection of red king crab larvae DNA in plankton samples. The assay allows identification of plankton samples containing crab larvae DNA and provides an estimate of DNA copy number present in a sample without sorting the plankton sample visually. The assay was tested on DNA extracted from whole red king crab larvae and plankton samples seeded with whole larvae, and it detected DNA copies equivalent to 1/10,000th of a larva and 1 crab larva/5mL sieved plankton, respectively. The real-time polymerase chain reaction assay can be used to screen plankton samples for larvae in a fraction of the time required for traditional microscopial methods, which offers advantages for stock assessment methodologies for red king crab as well as a rapid and reliable method to assess abundance of red king crab larvae as needed to improve the understanding of life history and population processes, including larval population dynamics.

Journal of Shellfish Research↗

USGS1941

Age and growth of the rock bass, Ambloplites rupestris (Rafinesque), in Nebish Lake, Wisconsin

The present study of the age and growth of the Nebish Lake rock bass is another in a series of papers that have been based wholly or in part on materials collected in the course of investigations on the fishes of the lakes of the northeastern highlands, Wisconsin, conducted cooperatively by the Wisconsin Geological and Natural History Survey and the United States Bureau of Fisheries over the periods, 1927-1928 and 1930-1932. The publications have included studies of the age and growth of the rock bass (Wright, 1929), whitefish (Hile and Deason, 1934), yellow perch (Schneberger, 1935), cisco (Hile, 1936a), muskellunge (Schloemer, 1936, 1938), largemouth black bass (Bennett, 1937), common sucker (Spoor, 1938), and smalimouth black bass (Bennett, 1938). A total of five mimeographed reports on the growth of game fish in Wisconsin has been issued by Juday and Schneberger (1930, 1933), Juday and Bennett (1935), and Juday and Schloemer (1936,. 1938). In addition there have appeared two publications on the morphometry of the cisco (Hile 193Gb, 1937), three dealing with the parasites of fishes in the region (Cross 1934, 1935, 1938) and one on the food of fishes (Couey, 1935). A paper by Hile and Juday on the bathymetric distribution of fish will appear simultaneously with the present study of the rock bass. A contribution on the growth of the bluegill by Schloemer will be published in the near future.

Transactions of the Wisconsin Academy of Sciences,↗

USGS2022

Action plan for restoration of coral reef coastal protection services: Case study example and workbook

This report was prepared by the U.S. Environmental Protection Agency (USEPA), Office of Research and Development, as part of the Air, Climate and Energy (ACE) research program, with support from Tetra Tech, Inc., and in collaboration with the National Oceanic and Atmospheric Administration, the U.S. Geological Survey, and The Nature Conservancy. The ACE research program provides scientific information and tools to support USEPA’s commitment to clean air, clean water and sustainable natural resources, even as environmental conditions change. A key component of this is the development of sound science to support adaptation. Adaptation involves preparing for and adjusting to the effects of climate change and its interactions with other global and local stressors. Because these effects are diverse, interactive, and difficult to predict, adapting management of natural resources in this context can be very challenging. Coral reefs—which provide valued ecosystem services such as fisheries, coastal protection, and tourism—are threatened by the effects of increased sea surface temperatures, sea level rise, and intensifying storms. These large-scale stressors are interacting with local stressors such as pollution, overfishing, and recreational misuse to drive ongoing and accelerating declines in coral reef ecosystems. Thus, there is a rising urgency to design and implement climate change adaptation measures that will enable reef resilience in the face of these changes. This includes accounting for, and adjusting to, the combined effects of climate change and local stressors in coral reef protection and restoration efforts. The action plan, example case study, and workbook found in this report demonstrate a structured process for integrating climate-smart design considerations into restoration planning using A Manager’s Guide to Coral Reef Restoration Planning and Design. The focus is a hypothetical coral reef restoration project that has a goal of recovering nature-based coastal protection services using restoration interventions. The intent is to provide readers with a completed example of how to use the Guide workbook to inform a draft action plan, centering on the topic of coastal protection as a burgeoning area of interest in coral reef science and management communities. The information in this hypothetical case study is not intended for direct use; rather, it provides a starting point for more detailed planning that would occur in specific places. And while a full review of the current literature on reef restoration methods is outside the scope of this report, readers are encouraged to use the examples herein as well as in the Guide as a jumping-off point for exploring the rapidly growing body of information on methods, techniques, successes, failures, monitoring challenges and future directions of coral reef restoration in a changing world. The workbook, together with the action plan, can serve as a valuable record of the planning thought process as well as a living document for adaptive management, to be updated through time as improved information becomes available.

EPA Report↗

USGS2024

Documentation of a probable spawning run of cisco Coregonus artedi in the Spanish River, Ontario, Canada

Coregonines were historically diverse and abundant in the Laurentian Great Lakes but declined throughout the 19th and 20th centuries due to multiple factors, including overfishing, habitat degradation, and interactions with invasive species. Great Lakes fishery managers are now working to restore coregonines across the basin. An important aspect of restoration efforts is the identification of key habitats, such as spawning habitats. Our understanding of the extent and diversity of coregonine spawning habitats in the Great Lakes is limited. Historical accounts suggest some cisco Coregonus artedi migrated to tributaries to spawn, but contemporary runs have not been reported. Moreover, cisco display considerable phenotypic variation, with different “forms” often occupying specific habitats or regions. We provide evidence for a previously undocumented spawning run of cisco in the Spanish River, a tributary to the North Channel of Lake Huron. We captured 31 mature and ripe fish (25 males, 6 females) approximately 52 km upstream of the river mouth on 15–16 November 2022. The fish ranged in age from 3-9 yr and total length from 287-394 mm. Of these 31 individuals, 27 were morphologically similar to C. artedi manitoulinus , a subspecies of cisco found in the North Channel; however, four individuals more closely resembled cisco captured in other areas of Lake Huron. These findings represent the best evidence of tributary spawning by cisco since the 1880s, and they have important implications for coregonine conservation and restoration efforts. Ongoing work aims to augment our understanding of the ecological and evolutionary importance of this population.

Ontario↗

USGS2007

Cartographic production for the Florida Shelf Habitat (FLaSH) map study: generation of surface grids, contours, and KMZ files

The Florida shelf represents a finite source of economic resources, including commercial and recreational fisheries, tourism, recreation, sand and gravel resources, phosphate, and freshwater reserves. Yet the basic information needed to locate resources, or to interpret and utilize existing data, comes from many sources, dates, and formats. A multi-agency effort is underway to coordinate and prioritize the compilation of suitable datasets for an integrated information system of Florida’s coastal and ocean resources. This report and the associated data files represent part of the effort to make data accessible and useable with computer-mapping systems, web-based technologies, and user-friendly visualization tools. Among the datasets compiled and developed are seafloor imagery, marine sediment data, and existing bathymetric data. A U.S. Geological Survey-sponsored workshop in January 2007 resulted in the establishment of mapping priorities for the state. Bathymetry was identified as a common priority among agencies and researchers. State-of-the-art computer-mapping techniques and data-processing tools were used to develop shelf-wide raster and vector data layers. Florida Shelf Habitat (FLaSH) Mapping Project ( http://coastal.er.usgs.gov/flash ) endeavors to locate available data, identify data gaps, synthesize existing information, and expand our understanding of geologic processes in our dynamic coastal and marine systems.

Florida↗

USGS2009

Evapotranspiration from the Lower Walker River Basin, West-Central Nevada, Water Years 2005-07

Evapotranspiration is the ultimate path of outflow of nearly all water from the Lower Walker River basin. Walker Lake is the terminus of the topographically closed Walker River basin, and the lake level has been declining at an average rate of about 1.6 feet per year (ft/yr) since 1917. As a result of the declining lake level, dissolved-solids concentrations are increasingly threatening the fishery and ecosystem health of the lake. Uncertainties in the water budget components of the Lower Walker River basin led the U.S. Geological Survey, in cooperation with the Bureau of Reclamation, to undertake an investigation to refine estimates of the water budget. Evapotranspiration from the Lower Walker River basin represents a major component of this water budget. The specific objectives of this report are to provide estimates of total and net evapotranspiration for water years 2005-07 for areas in the Lower Walker River basin in which annual evapotranspiration exceeds annual precipitation, and to summarize these results for areas of similar vegetation and soil characteristics, hydrographic subareas, and Walker Lake and Weber Reservoir. The three hydrographic subareas include the area along Walker River north of Walker Lake, the area of and adjacent to Walker Lake, and the area south of Walker Lake. Areas of annual evapotranspiration exceeding annual precipitation were identified and mapped in the field and were further delineated using remote-sensing analysis. These areas were classified into 10 evapotranspiration units. A network of 11 evapotranspiration stations was operated in natural and agricultural vegetation and on Walker Lake. Measured evapotranspiration rates ranged from 0.5 ft/yr at a sparsely vegetated desert shrub site to 5.0 ft/yr from Walker Lake. The greatest evapotranspiration rate on land was 4.1 ft/yr at an irrigated alfalfa field, and the greatest rate for natural vegetation was 3.9 ft/yr in a riparian community along Walker River. At an evapotranspiration station in a saltcedar grove, measurements indicated a possible decrease in evapotranspiration of about 50 percent due to defoliation of the saltcedar by the saltcedar leaf beetle. Total evapotranspiration from the evapotranspiration units identified in the Lower Walker River basin was about 231,000 acre-feet per year (acre-ft/yr). Of this amount, about 45,000 acre-ft/yr originated from direct precipitation, resulting in net evapotranspiration of about 186,000 acre-ft/yr. More than 80 percent of net evapotranspiration in the Lower Walker River basin was through evaporation from Walker Lake. Total evaporation from Walker Lake was about 161,000 acre-ft/yr and net evaporation was about 149,000 acre-ft/yr. Some previous estimates of evaporation from Walker Lake based on water-budget analysis actually represent total evaporation minus ground-water inflow to the lake. Historical evaporation rates determined on the basis of water budget analysis were less than the evaporation rate measured directly during this study. The difference could represent ground-water inflow to Walker Lake of 16,000 to 26,000 acre-ft/yr or could indicate that ground-water inflow to Walker Lake is decreasing over time as the lake perimeter recedes.

Scientific Investigations Report↗

USGS2015

Evaluation of mercury in rainbow trout collected from Duck Valley Indian Reservation reservoirs, southwestern Idaho and northern Nevada, 2007, 2009, and 2013

The U.S. Geological Survey, in cooperation with the Shoshone-Paiute Tribes of the Duck Valley Indian Reservation, analyzed mercury (Hg) concentration in rainbow trout ( Oncorhynchus mykiss ) collected from three reservoirs on the reservation (Mountain View, Lake Billy Shaw, and Sheep Creek) during sampling events in 2007, 2009, and 2013, to determine the risk of Hg exposure to Tribal members and the general public. Mercury concentration in predatory fish tends to increase with fish length, and this tendency was true for rainbow trout in the reservoirs on the reservation (r 2 = 0.44–0.70). Mean (average) and median Hg concentrations in fish tissue were determined for each reservoir for each sample year. All Hg concentrations were less than the U.S. Environmental Protection Agency’s water-quality criterion of 0.30 milligram per kilogram (mg/kg wet weight [ww]) and the Idaho Department of Environmental Quality’s reasonable potential to exceed threshold of 0.24 mg/kg. Idaho Department of Health and Welfare toxicologists determined that the Hg concentrations in rainbow trout in this study would not warrant a fish-consumption advisory for this species. Throughout this report, statistical findings with a p -value of less than 0.05 are referred to as “significant.” Mean Hg concentrations in fish-tissue samples collected from Mountain View Reservoir were higher in 2007 (0.12 mg/kg ww) than in 2009 and 2013 (0.07 and 0.06 mg/kg ww, respectively), indicating a significant mean decrease. Mean Hg concentrations in fish-tissue samples collected from Lake Billy Shaw showed no significant differences among sample years (2007, 0.12 mg/kg ww; 2009, 0.07 mg/kg ww; 2013, 0.09 mg/kg ww). Mean Hg concentrations in fish-tissue samples collected from Sheep Creek Reservoir significantly increased in 2013 (0.10 mg/kg ww) from concentrations in 2007 and 2009 (0.06 and 0.05 mg/kg ww, respectively). These temporal and spatial variations are not unexpected, as each body of water may differ in the factors and conditions affecting the rate of methylation and demethylation. Coupled with the dynamic put-and-take fishery, the outcomes reflect the system complexities among reservoirs despite their fairly close proximity to one another. The influence of these other factors is evident when the analysis of atmospheric Hg deposition at Mercury Deposition Network site NV02 in northern Nevada showed no significant linear trend in wet Hg deposition rates for 2003–2013 (average 3.02 micrograms per square meter).

Idaho, Nevada↗

USGS2025

Comparing surgery time and short-term incision healing for Largemouth Bass using smooth- and barbed-absorbable sutures

Objective Barbed sutures have become increasingly favored over traditional smooth sutures in human medicine but remain understudied in fisheries biotelemetry applications. Our objectives were to (1) compare surgery time and recovery time for Largemouth Bass Micropterus nigricans when using smooth- versus barbed-absorbable sutures to close the incisions and (2) compare the short-term healing rates of incisions that were closed with the two sutures. Methods We conducted a surgical trial using two incision closure methods: a smooth suture method, which used three interrupted sutures, and a barbed suture method, which used a running style suture. Surgery and surgical recovery times were recorded for each surgery. At 14 d postsurgery, each incision was scored for openness and inflammation. Results Barbed sutures (median surgery time = 133.5 s) resulted in higher surgical efficiency than smooth sutures (median surgery time = 255.0 s). Surgical recovery time did not differ between the two suture types. Mortality did not differ between suture types (overall mortality = 21%) and was similar to previously reported mortality rates. Incision site inflammation and openness were variable but did not differ between suture types. Conclusions Our results indicate that barbed sutures may increase surgical efficiency while maintaining currently observed survival and healing rates for Largemouth Bass.

North American Journal of Fisheries Management↗

USGS2005

A synthesis of ecological and fish-community changes in Lake Ontario, 1970-2000

We assessed stressors associated with ecological and fishcommunity changes in Lake Ontario since 1970, when the first symposium on Salmonid Communities in Oligotrophic Lakes (SCOL I) was held (J. Fish. Res. Board Can. 29: 613-616). Phosphorus controls implemented in the early 1970s were undeniably successful; lower food-web studies showed declines in algal abundance and epilimnetic zooplankton production and a shift in pelagic primary productivity toward smaller organisms. Stressors on the fish community prior to 1970 such as exploitation, sea lamprey ( Petromyzon marinus ) predation, and effects of nuisance populations of alewife ( Alosa pseudoharengus ) were largely ameliorated by the 1990s. The alewife became a pivotal species supporting a multi-million-dollar salmonid sport fishery, but alewife-induced thiamine deficiency continued to hamper restoration and sustainability of native lake trout ( Salvelinus namaycush ). Expanding salmonine populations dependent on alewife raised concerns about predator demand and prey supply, leading to reductions in salmonine stocking in the early 1990s. Relaxation of the predation impact by alewives and their shift to deeper water allowed recovery of native fishes such as threespine stickleback (Gasterosteus aculeatus) and emerald shiner ( Notropis atherinoides ). The return of the Lake Ontario ecosystem to historical conditions has been impeded by unplanned introductions. Establishment of Dreissena spp. led to increased water clarity and increased vectoring of lower trophic-level production to benthic habitats and contributed to the collapse of Diporeia spp. populations, behavioral modifications of key fish species, and the decline of native lake whitefish (Coregonus clupeaformis ). Despite reduced productivity, exotic-species introductions, and changes in the fish community, offshore Mysis relicta populations remained relatively stable. The effects of climate and climate change on the population abundance and dynamics of Lake Ontario fish were unknown at the time of SCOL I, but a temperature-time series begun in the late 1950s in the Kingston Basin has since provided evidence of climate warming and associated fish-community changes. We should expect ecological surprises in the coming decades that will challenge scientists and fishery managers especially as they face new exotic species, climate warming, and escalating stakeholder demands on the resource. Continuous long-term ecological studies were critical for interpreting changes in Lake Ontario's fish community over the past three decades and will be essential in the future for both scientific understanding and management of the fishery.

Technical Report↗

USGS2010

Influence of a low intensity electric sea lion deterrence system on the migratory behavior of fishes in the upstream migrant tunnel (UMT) at Bonneville Dam.

Predation by pinnipeds, such as California sea lions (Zalophus alifornianus), Pacific harbor seals (Phoca vitulina), and Stellar sea lions (Eumetopias jubatus) on returning adult Pacific salmon (Oncorhynchus spp.) in the Columbia River basin has become an increasing concern for fishery managers trying to conserve and restore threatened and endangered runs of salmonids. As a result, Smith-Root Incorporated (SRI; Vancouver, Washington) proposed a demonstration project to evaluate the potential of an electrical array to deter marine mammals (SRI 2007). The objective of their work was to develop, deploy, and evaluate a passive, integrated electric and sonar array that selectively inhibits upstream marine mammal movements and predation, without injuring pinnipeds or affecting anadromous fish migrations. However, before such a device could be placed in the field, concerns by regional fishery managers about the potential effects of such a device on the migratory behavior of or injury to Pacific salmon, steelhead (O. mykiss), Pacific lampreys (Entoshpenus tridentata), and white sturgeon (Acipenser transmontanus) needed to be addressed.

Oregon, Washington↗

USGS2016

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2015

In 2015, the U.S. Geological Survey’s (USGS) Lake Erie Biological Station (LEBS) successfully completed large vessel surveys in all three of Lake Erie’s basins. Lake Erie Biological Station’s primary vessel surveys included the Western Basin Forage Fish Assessment and East Harbor Fish Community Assessment as well as contributing to the cooperative multi-agency Central Basin Hydroacoustics Assessment, the Eastern Basin Coldwater Community Assessment, and Lower Trophic Level Assessment (see Forage and Coldwater Task Group reports). In 2015, LEBS also initiated a Lake Erie Central Basin Trawling survey in response to the need for forage fish data from Management Unit 3 (as defined by the Yellow Perch Task Group). Results from these surveys contribute to Lake Erie Committee Fish Community Goals and Objectives. Our 2015 vessel operations were initiated in early April and continued into late November. During this time, crews of the R/V Muskie and R/V Bowfin deployed 121 bottom trawls covering 83.2 ha of lake-bottom and catching 105,600 fish totaling 4,065 kg during four separate trawl surveys in the western and central basins of Lake Erie. We deployed and lifted 9.5 km of gillnet, which caught an additional 805 fish, 100 (337 kg) of which were the native coldwater predators Lake Trout, Burbot, and Lake Whitefish (these data are reported in the 2016 Coldwater Task Group report). We also conducted 317 km of hydroacoustic survey transects (reported in the 2016 Forage Task Group report), collected 114 lower trophic (i.e. zooplankton and benthos) samples, and obtained 216 water quality observations (e.g., temperature profiles, and water samples). The LEBS also assisted CLC member agencies with the maintenance and expansion of GLATOS throughout all three Lake Erie sub-basins. Within the following report sections, we describe results from three trawl surveys – the spring and autumn Western Basin Forage Fish Assessment and the East Harbor Forage Fish Assessment – and the Lower Trophic Level Assessment conducted in 2015, and examine trends in the fish community structure and trophic status of Lake Erie. Results of our central basin trawl survey are reported in the 2016 Yellow Perch Task Group report.

Report↗

USGS2009

An incomplete analysis

Niles and colleagues (2009) do not present all of the data relevant to the issues they address in the article they wrote for BioScience. They reference unnamed sources for pre-1997 horseshoe crab harvest to conclude that recent harvest exceeds historic harvest. In fact, reported landings from New Jersey, Delaware, Maryland, and Virginia in 2006 (352 metric tons [mt]) were between landings in 1989 (365 mt) and 1990 (232 mt) (www.st.nmfs.noaa.gov/st1/commercial/inaex.html), despite nonmandatory reporting coastwide before 1998 (Kreamer and Michels 2009). They present egg densities from New Jersey beaches only. Of the 11 Delaware beaches sampled, eggs in the top 5 centimeters exceeded their monitoring target of 50,000 per square meter at 5 in 2006 and at 6 in 2007 (Kalasz et al. 2008). They rely on the Delaware trawl survey for historic trends. Nine fishery-independent surveys have been used to assess trends in the Delaware Bay region, and several began before 1990 (Smith et al. 2009a).

BioScience↗

USGS2022

Standard operating protocol for mark and recapture monitoring of Brook Floater in streams

The Brook Floater ( Alasmidonta varicosa ) is a small (<100 mm) freshwater mussel (Family: Unionidae) found in streams of the eastern United States (U.S.) (Nedeau 2008). While there has been limited effort to document the status of Brook Floater across its range, there is evidence of Brook Floater range contraction and declining local abundances over recent decades (Wicklow et al. 2017, NatureServe 2021). Brook Floater is a Species of Greatest Conservation Need (SGCN) in 15 states (94% of range); listed as endangered, threatened, or special concern in nearly every state and province where it still occurs; and has been extirpated from two states (Rhode Island and Delaware). Brook Floater was petitioned for Federal listing under the U.S. Endangered Species Act; however, the listing was determined not to be warranted (U.S. FWS 2019), although it remains a Regional SGCN of very high concern in U.S. Fish & Wildlife Service (U.S. FWS) Regions 5 (Terwilliger 2015) and 4 (SEAFWA-WDC 2019) and is an At-Risk Species in U.S. FWS Region 5. A critical component of understanding population declines is site-specific information about population density and demographics (e.g., growth, age structure) to assess population viability. This information had previously only been collected for a few populations of Brook Floater (e.g., Massachusetts Division of Fisheries & Wildlife, North Carolina Wildlife Resources Commission) and methods to collect these data varied from state to state, thus limiting comparisons across the range. In 2016, a competitive State Wildlife Grant (SWG) was awarded to develop a standardized monitoring technique that will aid in understanding differences in population viability across its range and assess changes in populations through time. The protocol described in this report was subsequently developed and tested by Massachusetts and Maine (2 sites in each state) and revised based on field experiences. Data collected using this protocol will allow for state managers to make informed decisions about management actions for Brook Floater. Monitoring approaches are ideally designed to meet management objectives. Management objectives are specific, quantifiable outcomes that reflect the values of the decision makers and relate directly to the management decisions (Conroy and Peterson 2013). Lack of well-defined objectives hinders success of conservation and management actions because there are undefined metrics to determine when the objectives have been met (Yoccoz et al. 2001, Nichols and Thompson 2006). While monitoring to understand a system (i.e., status and trends; Reynolds et al. 2016) provides baseline information for developing management recommendations in the future, Nichols and Thompson (2006) criticize status and trends monitoring because of time lags associated with conservation and the costs and resource availability needed for surveillance, among other reasons. State partners in the Brook Floater SWG have a variety of different monitoring objectives (e.g., abundance/density, survival, recruitment) that depend on the population sizes and demographics. There are many approaches for estimating population parameters such as density, age structure, recruitment, and growth rates. For example, presence/absence (i.e., multistate models), counts (i.e., multi-state models or Dail-Madsen model; Dail and Madsen 2011), and capture mark-recapture (CMR; e.g. Cormack-Jolly-Seber models; Lindberg and Rexstad 2002) are all approaches for assessing population status and viability.

Cooperator Science Series↗

USGS2024

Hydrologic, water operations, reservoir temperature, river temperature, sediment transport, habitat, and fish population modeling for the Trinity River Water Management Plan

Humboldt County is developing a Water Management Plan that will describe a range of proposed annual releases from Trinity Reservoir consistent with the 1959 water delivery contract between Humboldt County and the U.S. Bureau of Reclamation (Reclamation). The 1959 contract states that Reclamation shall release not less than an annual quantity of 50,000 acre-feet into the Trinity River for the beneficial use of Humboldt County and other downstream users (Contract Water). The Water Management Plan will outline how Contract Water should be released for the benefit of fisheries in the Trinity River and lower Klamath River, with the primary goal of expanding a harvestable surplus of Tribal, recreational, and commercial fisheries. A set of annual Contract Water release scenarios were developed during five workshops conducted in 2022 and 2023 with interested parties including Humboldt County, state and federal resource agencies, tribal representatives, Reclamation, and the U.S. Department of the Interior Solicitor’s office. A suite of modeling and technical tools was used to analyze annual conditions with and without Contract Water releases. This Modeling Report describes the modeling tools used to assess Contract Water release scenarios, including CalSim II, HEC-5Q, RBM10, sediment transport models, Chinook Salmon habitat models, and the Stream Salmonid Simulator. Results from all models are summarized to provide a comparative overview of modeled release scenarios to modeled baseline conditions. Mean annual Contract Water release scenarios ranged from 50,000 acre-feet to 170,000 acre-feet, and varied in timing, magnitude, and duration, though all releases were made between October and April. As shown in Table ES-1, a key finding of this modeling report is Contract Water releases that had the greatest modeled increase in Chinook Salmon abundance relative to baseline conditions included those that released 50,000 acre-feet in the fall period from October through December as pulse flows or baseflows, and those that released 170,000 acre-feet from October through April as a combination of pulse flows and baseflows. Modeled beneficial effects on populations were primarily due to either (1) increases in habitat area during the spawning life stage in October through December, which decreased redd superimposition (e.g., the process of a later arriving spawner building a redd on top of an existing redd) and improved egg survival, or (2) increases in flow during the fry emergence and juvenile rearing life stage in March through April, which increased the fry and parr carrying capacity (e.g., the upper limit for the number of fry or parr that a habitat unit can support) of individual habitat units. Another key finding of this report is all Contract Water scenarios that released at least 50,000 acre-feet annually from Trinity Reservoir had similar effects on Trinity Reservoir storage, Central Valley Project (CVP) storage, CVP contract water deliveries, and Sacramento River water temperatures. Whether these scenarios were released annually as a fall baseflow, fall pulse flow, spring pulse flow, or spring baseflow, they all resulted in similar storage patterns in Trinity Reservoir – an annual reduction in storage relative to the baseline that was relatively small in wetter years and larger in drier years. As a result of lower Trinity Storage levels, Trinity River Division (TRD) exports to the CVP were reduced. Because the timing of exports is similar each year, reaching a peak in July through September, the reduction to exports occurred at the same time each year, independent of Contract Water release timing, resulting in similar storage, CVP delivery, and water temperature effects in the Sacramento River basin portion of the CVP. The water temperature effects on the Sacramento River were limited to the months of July and August, relatively minor, and were primarily attributed to changes in storage, release magnitude, and release temperature from Lake Shasta, and not due explicitly to inflows from the TRD.

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