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USGS2014

Conservation and management of fisheries and aquatic communities in Great Lakes connecting channels

The North American Laurentian Great Lakes are linked by a unique series of riverine and lacustrine waters known as the Great Lakes connecting channels that are as integral to the basin's ecology and economies as the lakes themselves. The St. Marys River (SMR) is the northernmost channel and flows from Lake Superior to Lake Huron. Waters from the upper Great Lakes (Lakes Superior, Michigan, and Huron) empty from Lake Huron via the St. Clair–Detroit River system (SCDRS, also known as the Huron–Erie Corridor) into Lake Erie. The SCDRS is composed of the St. Clair River, Lake St. Clair, and the Detroit River. The Niagara River (NR) serves as the outflow from Lake Erie into Lake Ontario. The NR above Niagara Falls is bisected by Grand Island and contains several other islands and man-made embayments whereas the NR below the falls is more linear. The outflow from Lake Ontario, representing the natural outlet of all the Great Lakes, is the St. Lawrence River (SLR) which empties into the Gulf of St. Lawrence in the northwest Atlantic Ocean.

Great Lakes↗

USGS2021

A morphodynamic model to evaluate long-term sandbar rebuilding using controlled floods in the Grand Canyon

Controlled floods released from dams have become a common restoration strategy in river systems worldwide. Here we present a morphodynamic model of sandbar volume change for a subset of sandbars of the Colorado River in Grand Canyon National Park, where controlled floods are part of a management strategy focused on sandbar maintenance. We simulate sandbars as a triangular wedge, where deposition and erosion are modeled using physically based approaches that are driven by nearly continuous observations of flow and suspended sand concentration. We optimize an eddy exchange coefficient and erosion rate parameter by comparing model predictions to measured bar volumes. The model captures most of the variability in observed volume changes, and demonstrates the importance of flood frequency and sand concentration on average bar size. The model is easily implemented and adaptable, providing a means for predicting the future behavior of sandbars under a variety of streamflow and sediment supply scenarios.

Arizona↗

USGS2025

Morphometric and geological characterization with statistical correlations for 33 tributary drainage basins of the San Juan River watershed in the Four Corners region, USA

Basin morphometry, climate and geology control how a hydrological network evolves over time, controlling the efficiency of weathering of elements from geological materials, and ultimately the input of sediment and dissolved constituents to river systems. Exceedances to the Navajo Nation surface water quality standards for trace metals have been reported in the San Juan River watershed. Because metals are transported adsorbed to fine-grain sediment, the identification of areas with elevated sources of trace metals and/or areas with increased erosion and sediment transport potential is an important first step in protecting water quality. Physical factors such as elevation, slope, relief and stream order were used to quantify morphometric parameters that effect the contribution of trace metals into the stream network. By correlating these parameters with water quality data that were collected from tributaries along the San Juan River, we identified statistically significant regressions between morphometric parameters and total Al, Pb, U, Fe and Mn in surface water. Positive correlations with trace metals include tributary drainage basin perimeter, pour point elevation and total number of streams, while negative correlations include stream length ratio, ruggedness number and longest basin axis. Stream reach measurements within geological units that contain known trace metal constituents reveal that Gallegos Canyon and Desert Creek are the most susceptible to sediment mobilization and transport, while other tributary drainage basins, such as Desert, Recapture and Salt creeks, are associated with naturally elevated concentrations of Al, As, Pb and U.

Arizona, Colorado, New Mexico, Utah↗

USGS2019

Winter and spring diet of the orangebelly darter, Etheostoma radiosum, among tributaries of the Lower Mountain Fork River

Little is known about prey use by the orangebelly darter, Etheostoma radiosum , and what is known has been described from relatively large river systems. We examined prey use by orangebelly darters from first- and second-order tributaries in the Lower Mountain Fork River of southeastern Oklahoma. Adult darters ( n = 141) were captured from five tributaries in 2015, and stomach contents were examined to determine prey use. Aquatic isopods were the most frequently consumed organism. This differs notably from previous reports that insects, primarily dipterans, were the predominant prey for the species.

Oklahoma↗

USGS2013

Salmonids, stream temperatures, and solar loading--modeling the shade provided to the Klamath River by vegetation and geomorphology

The U.S. Geological Survey is studying approaches to characterize the thermal regulation of water and the dynamics of cold water refugia. High temperatures have physiological impacts on anadromous fish species. Factors affecting the presence, variability, and quality of thermal refugia are known, such as riverine and watershed processes, hyporheic flows, deep pools and bathymetric factors, thermal stratification of reservoirs, and other broader climatic considerations. This research develops a conceptual model and methodological techniques to quantify the change in solar insolation load to the Klamath River caused by riparian and floodplain vegetation, the morphology of the river, and the orientation and topographic characteristics of its watersheds. Using multiple scales of input data from digital elevation models and airborne light detection and ranging (LiDAR) derivatives, different analysis methods yielded three different model results. These models are correlated with thermal infrared imagery for ground-truth information at the focal confluence with the Scott River. Results from nonparametric correlation tests, geostatistical cross-covariograms, and cross-correlograms indicate that statistical relationships between the insolation models and the thermal infrared imagery exist and are significant. Furthermore, the use of geostatistics provides insights to the spatial structure of the relationships that would not be apparent otherwise. To incorporate a more complete representation of the temperature dynamics in the river system, other variables including the factors mentioned above, and their influence on solar loading, are discussed. With similar datasets, these methods could be applied to any river in the United States—especially those listed as temperature impaired under Section 303(d) of the Clean Water Act—or international riverine systems. Considering the importance of thermal refugia for aquatic species, these methods can help investigate opportunities for riparian restoration, identify problematic reaches unlikely to provide good habitat, and simulate changes to solar loading estimates from alternative landscape configurations.

California↗

USGS1997

Water Quality Assessment of the Comal Springs Riverine System, New Braunfels, Texas, 1993-94

Comal Springs of Central Texas are the largest springs in the southwestern United States. The long-term average flow of the Comal River, which essentially is the flow from Comal Springs, is 284 cubic feet per second (ft3/s). The artesian springs emerge at the base of an escarpment formed by the Comal Springs fault. The Comal River (fig. 1) is approximately 2 miles (mi) long and is a tributary of the Guadalupe River. Most of the Comal River follows the path of an old mill race, here referred to as New Channel, then flows through a channel carved by a tributary stream (Dry Comal Creek), eventually rejoining its original watercourse. The original watercourse, here referred to as Old Channel, has been reduced to a small stream, the source of which is water diverted from Landa Lake and several springs in the channel. In addition to being an important economic resource of the region, the springs and associated river system are home to unique aquatic species such as the endangered fountain darter (Etheostoma fonticola). The Comal Springs riffle beetle (Heterelmis comalensis), which exists in the springflow channel upstream of Landa Lake, has been proposed for listing as endangered. The Comal Springs dryopid beetle (Stygoparmus comalensis) and the Peck’s cave amphipod (Stygobromus pecki) are two subterranean species associated with Comal Springs also proposed for endangered listing.

Fact Sheet↗

USGS2008

Hydrographs showing ground-water level trends for selected wells in the Yakima River basin aquifer system, Washington

Selected ground-water level hydrographs for the Yakima River basin aquifer system, Washington, are presented in an interactive web-based map to illustrate the existence or lack of trends in ground-water levels and, thus, potential variations in ground-water availability in the area. Hydrographs are linked to points corresponding to the well location on an interactive map of the study area. Ground-water level data and well information from Federal, State, and local agencies were obtained from the U.S. Geological Survey National Water Information System. Selected data points were excluded from hydrographs to emphasize long-term term trends over short-term effects of human activity (such as pumping a well) and seasonal fluctuations in ground-water levels.

Washington↗

USGS2018

Estimating fluvial discharges coincident with 21st century coastal storms modeled with CoSMoS

On the open coast, flooding is largely driven by tides, storm surge, waves, and in areas near coastal inlets, the magnitude and co-occurrence of high fluvial discharges. Statistical methods are typically used to estimate the individual probability of coastal storm and fluvial discharge occurrences for use in sophisticated flood hazard models. A challenge arises when considering possible future climate changes and the relation between the intensity of extreme coastal water levels and high fluvial discharges. In this study, the Coastal Storm Modeling System (CoSMoS) is used to dynamically downscale global climate projections to local-scale storm-driven coastal water levels, including associated fluvial discharges. An efficient approach to derive 21st century projected fluvial discharges for rivers within San Francisco Bay was developed, leveraging a readily-available time-series of projected (2010 – 2100) discharge rates of the predominant river system (the “Delta”). Delta projections were used to estimate flow rates of 8 Bay rivers for the IPCC's CMIP5 RCP4.5 climate scenario. Relationships describing discharge rates, normalized by respective watershed areas, were developed and applied to projected data to generate 21st century fluvial discharge time-series for each river. Results indicate decreasing discharge rates throughout the 21 st century with the exception of extreme flows.

California↗

USGS2024

Estimating the benefits of floodplain restoration to juvenile Chinook salmon in the upper San Francisco Estuary, United States, under future climate scenarios

Many river systems within the Central Valley of California have been disconnected from their floodplains, hypothesized to be partially responsible for declining Chinook salmon populations ( Oncorhynchus tshawytscha ). The primary floodplain of the system, Yolo By-Pass (known regionally as “Yolo Bypass”), offered an opportunity to examine whether improved connectivity between the floodplain and river could limit negative climate change effects on salmon populations. Specifically, the top of the floodplain (Fremont Weir) is being modified to provide Sacramento River Chinook salmon better access to floodplain rearing habitat. We estimated restoration effects on the Yolo By-Pass flood regime now and under future climate scenarios using flow rating curves. Additionally, we used temperature and flow-specific effects on Chinook salmon population dynamics within the Yolo By-Pass and Sacramento River complex to describe how the restoration project and climate change may interact to affect juvenile Chinook salmon biomass production. Our results indicate that the Fremont Weir restoration project will extend the frequency, timing, and duration of Yolo By-Pass flooding. Our production model indicates that the modification will result in greater salmon entrainment rates into the Yolo By-Pass, where salmon growth rates, survival rates, and biomass production were higher when compared to the Sacramento River main stem. The project appears to benefit all regional runs of Chinook salmon, which should help support life history diversity. Our results suggest that the weir modification should benefit native fish from the Central Valley that use floodplain habitat and that these benefits may be resilient to challenges created by a changing climate.

California↗

USGS2014

Benthos and plankton community data for selected rivers and harbors along Wisconsin's Lake Michigan shoreline, 2012

Four river systems on the Wisconsin shoreline of Lake Michigan are designated Areas of Concern (AOCs) because of severe environmental degradation: the Lower Menominee River, Lower Green Bay and Fox River, Sheboygan River, and Milwaukee Estuary. Each AOC has one or more Beneficial Use Impairments (BUIs) that form the basis of the AOC designation and that must be remediated or otherwise addressed before the AOC designation can be removed. All four of these AOCs have BUIs for benthos (bottom-dwelling or benthic invertebrates), and all but the Menominee River have a BUI for plankton (free-floating algae and invertebrates, or phytoplankton and zooplankton, respectively). The U.S. Geological Survey collected samples in 2012 at these four AOCs and at six non-AOCs to support the evaluation of the status of aquatic communities in the benthos and plankton at the AOCs. Samples were collected during three periods representing spring, summer, and fall. Benthos samples were collected using a dredge grab sampler and artificial substrates; plankton samples were collected using a tow net for zooplankton and a vertical water sampler for phytoplankton. Benthos and plankton were identified to the lowest possible taxonomic category and counted; samples for documenting water temperature, pH, and specific conductance, as well as sediment particle size and organic carbon were also collected during biological sampling.

Wisconsin↗

USGS2018

Preliminary synthesis and assessment of environmental flows in the middle Verde River watershed, Arizona

A 3-year study was undertaken to evaluate the suitability of the available modeling tools for characterizing environmental flows in the middle Verde River watershed of central Arizona, describe riparian vegetation throughout the watershed, and estimate sediment mobilization in the river. Existing data on fish and macroinvertebrates were analyzed in relation to basin characteristics, flow regimes, and microhabitat, and a pilot study was conducted that sampled fish and macroinvertebrates and the microhabitats in which they were found. The sampling for the pilot study took place at five different locations in the middle Verde River watershed. This report presents the results of this 3-year study. The Northern Arizona Groundwater Flow Model (NARGFM) was found to be capable of predicting long-term changes caused by alteration of regional recharge (such as may result from climate variability) and groundwater pumping in gaining, losing, and dry reaches of the major streams in the middle Verde River watershed. Over the period 1910 to 2006, the model simulated an increase in dry reaches, a small increase in reaches losing discharge to the groundwater aquifer, and a concurrent decrease in reaches gaining discharge from groundwater. Although evaluations of the suitability of using the NARGFM and Basin Characteristic Model to characterize various streamflow intervals showed that smallerscale basin monthly runoff could be estimated adequately at locations of interest, monthly stream-flow estimates were found unsatisfactory for determining environmental flows. Orthoimagery and Moderate Resolution Imaging Spectroradiometer data were used to quantify stream and riparian vegetation properties related to biotic habitat. The relative abundance of riparian vegetation varied along the main channel of the Verde River. As would be expected, more upland plant species and fewer lowland species were found in the upper-middle section compared to the lower-middle section, and vice-versa. Vegetation changes within the upper-middle and lower-middle reaches are related to differences in climate and hydrology. In general, the riparian vegetation of the middle Verde River watershed is that of a healthy ecosystem’s mixed age, mixed patch structure, likely a result of the mostly unaltered disturbance regime. The frequency of in-river hydrogeomorphic features (pool, riffle, run) varied along the middle Verde River channel. There was a greater abundance of riffle habitat in the upper-middle reach; the lower-middle reach included more pool habitat. The Oak Creek tributary was more homogenous in geomorphic stream habitat composition than West Clear Creek, where runs dominated the upper reaches and pools dominated many of the lower reaches. On the basis of the period of record and discharges recorded at 15-minute intervals, five flows were found to reach the gravel-transport threshold. Sediment mobilization computed with flows averaged over daily time steps yielded just three flows that reached the gravel-transport threshold, and monthly averaged flows yielded none. In the middle Verde River watershed, 15-minute data should be used when possible to evaluate sediment transport in the river system. Data from more than 300 fish surveys conducted from 1992 to 2011 were analyzed using two schemes, one that divided the river into five reaches based on basin characteristics, and a second that divided the river into five reaches based on degree of flow alteration (specifically, diversions). Fish community metrics and assemblage data were used to analyze patterns of species composition and abundance in the two approaches. Overall, native and non-native species were regularly interacting and probably competing for similar resources. Fish abundances were also analyzed in response to floods and other flow metrics. Although the data are limited, native fish abundances increased more rapidly than non-native fish abundances in response to large floods. The basin-characteristic reach analysis showed native fish in greater abundance in the upper-middle reaches of the Verde River watershed and generally decreasing with downstream distance. The median relative abundance of native fish decreased by 50 percent from reach 1 to reach 5. Using the reach scheme based on degree of flow alteration, nondiverted reaches were found to have a greater abundance of native fish than diverted reaches. In heavily diverted reaches, non-native species outnumbered native species. Fish metrics and stream-flow metrics for the 30, 90, and 365-day periods before collection were computed and the results analyzed statistically. Only abundance of all fish species was associated with the 30-day flow metrics. The 90-day flow metrics were generally positively associated with fish metrics, whereas the 365-day flow metrics had more negative correlations. In particular, significant relations were found between fish metrics and the magnitude and frequency of high flows, including maximum monthly flow, median annual number of high-flow events, and median annual maximum streamflow. Native sucker (Catostomidae) populations tended to decrease in periods of extended base flow, and fish in the non-native sunfish family (Centrarchidae) decreased in periods of flashy, high magnitude flows. A pilot study surveyed fish at five locations in the upper part of the middle Verde River watershed as a means to measure microhabitat availability and quantify native and non-native fish use of that available microhabitat. Results indicated that native and non-native species exhibit some clear differences in microhabitat use. Although at least some native and non-native fish were found in each velocity, depth, and substrate category, preferential microhabitat use was common. On a percentage basis, non-native species had a strong preference for slow-moving and deeper water with silt and sand substrate, with a secondary preference for faster moving and very shallow water and a coarse gravel substrate. Native species showed a general preference for somewhat faster, moderate depth water over coarse gravel and had no clear secondary preference. Macroinvertebrate-variables index period, high-flow year, and collection location (upper-middle Verde River, lowermiddle Verde River, or Verde River tributaries) were found to be important explanatory variables in differentiating among community metrics. Overall richness (number of unique taxa), Shannon’s diversity index, and the percent of the most dominant taxa were all highly correlated, but their response to each macroinvertebrate variable was different. The percentage of mayfly (order Ephemeroptera) taxa was significantly higher in Oak Creek and the upper-middle and lower-middle Verde River reaches, locations which have higher flows and more urbanization than other reaches. When community metrics were related to hydrologic metrics, caddisfly (order Trichoptera) populations appeared to increase and mayfly populations to decrease in response to less flashy and more stable streamflows. Conversely, caddisfly populations appeared to decrease and mayfly populations to increase in response to greater flow variability. Six locations along the Verde River were sampled for macroinvertebrates as part of a pilot study associated with this report—(1) below Granite Creek, (2) near Campbell Ranch, (3) at the U.S. Geological Survey Paulden gage, (4) at the Perkinsville Bridge, (5) at the USGS Clarkdale gage, and (6) near the Reitz Ranch property. A nonmetric multidimensional scaling ordination of macroinvertebrate assemblages showed that the Verde River below Granite Creek site was different from the five other sites and that the Perkinsville Bridge and near Reitz Ranch samples had similar community structure. The near Campbell Ranch and Paulden gage locations had similar microhabitat characteristics, with the exception of riparian cover, yet the assemblage structure was very different. The different community composition at Verde River below Granite Creek was likely due to it having the smallest substrate sizes, lowest velocities, shallowest depths, and most riparian cover of the six sites.

Arizona↗

USGS2025

New insights reveal a temporally distinct two-stock genetic structure for Suwannee River Gulf sturgeon

Understanding population genetic structure and patterns of gene flow is important for effective decision making and the preservation of genetic diversity, especially when managing protected species. Historically, Gulf sturgeon have been managed by river system, with early evidence supporting spatially distinct genetic structure across 7 natal populations. However, an increasing number of studies recognize that some rivers possess 2 genetically distinct sturgeon stocks residing within the same drainage. This, combined with evidence of both spring and fall spawning events within these drainages, suggests the distinction between these stocks may be temporally mediated, as similarly exhibited by the closely related Atlantic sturgeon. We analyzed the movements of 136 Gulf sturgeon within the Suwannee River, Florida, USA, between 2008 and 2022 using acoustic telemetry. We assessed migratory patterns and presence within known spawning habitat to categorize individuals as exhibiting either spring, fall, or unknown spawning behaviors each year. These individuals were also genotyped for 14 microsatellite loci to assign them to a genetic group. Our results reinforce previous work suggesting the presence of 2 genetically distinct stocks in the Suwannee River and indicate this genetic structure is driven by fidelity to temporally distinct spawning events, with one stock spawning in the spring and the other in fall. The delineation of these 2 sympatric stocks, historically managed as one, has management implications for the recovery of this species.

Florida, Georgia↗

USGS2019

Defining the limits of spectrally based bathymetric mapping on a large river

Remote sensing has emerged as a powerful method of characterizing river systems but is subject to several important limitations. This study focused on defining the limits of spectrally based mapping in a large river. We used multibeam echosounder (MBES) surveys and hyperspectral images from a deep, clear-flowing channel to develop techniques for inferring the maximum detectable depth, d m a x "> d m a x , directly from an image and identifying optically deep areas that exceed d m a x "> d m a x . Optimal Band Ratio Analysis (OBRA) of progressively truncated subsets of the calibration data provided an estimate of d m a x "> d m a x by indicating when depth retrieval performance began to deteriorate due to the presence of depths greater than the sensor could detect. We then partitioned the calibration data into shallow and optically deep ( d > d m a x "> d > d m a x ) classes and fit a logistic regression model to estimate the probability of optically deep water, P r ( O D ) "> P r ( O D ) . Applying a P r ( O D ) "> P r ( O D ) threshold value allowed us to delineate optically deep areas and thus only attempt depth retrieval in relatively shallow locations. For the Kootenai River, d m a x "> d m a x reached as high as 9.5 m at one site, with accurate depth retrieval ( R 2 = 0.94 "> R 2 = 0.94 ) in areas with d < d m a x "> d < d m a x . As a first step toward scaling up from short reaches to long river segments, we evaluated the portability of depth-reflectance relations calibrated at one site to other sites along the river. This analysis highlighted the importance of calibration data spanning a broad range of depths. Due to the inherent limitations of passive optical depth retrieval in large rivers, a hybrid field- and remote sensing-based approach would be required to obtain complete bathymetric coverage.

Idaho↗

USGS2011

How restructuring river connectivity changes freshwater fish biodiversity and biogeography

Interbasin water transfer projects, in which river connectivity is restructured via man-made canals, are an increasingly popular solution to address the spatial mismatch between supply and demand of fresh water. However, the ecological consequences of such restructuring remain largely unexplored, and there are no general theoretical guidelines from which to derive these expectations. River systems provide excellent opportunities to explore how network connectivity shapes habitat occupancy, community dynamics, and biogeographic patterns. We apply a neutral model (which assumes competitive equivalence among species within a stochastic framework) to an empirically derived river network to explore how proposed changes in network connectivity may impact patterns of freshwater fish biodiversity. Without predicting the responses of individual extant species, we find the addition of canals connecting hydrologically isolated river basins facilitates the spread of common species and increases average local species richness without changing the total species richness of the system. These impacts are sensitive to the parameters controlling the spatial scale of fish dispersal, with increased dispersal affording more opportunities for biotic restructuring at the community and landscape scales. Connections between isolated basins have a much larger effect on local species richness than those connecting reaches within a river basin, even when those within-basin reaches are far apart. As a result, interbasin canal projects have the potential for long-term impacts to continental-scale riverine communities.

Water Resources Research↗

USGS2023

Watershed- and reach-scale drivers of phosphorus retention and release by streambed sediment in a western Lake Erie watershed during summer

Reducing phosphorus (P) concentrations in aquatic ecosystems, is necessary to improve water quality and reduce the occurrence of harmful cyanobacterial algal blooms. Managing P reduction requires information on the role rivers play in P transport from land to downstream water bodies, but we have a poor understanding of when and where river systems are P sources or sinks. During the summers of 2019 and 2021, we sampled streambed sediment at 78 sites throughout the Maumee River network (a major source of P loads to Lake Erie) focusing on the zero equilibrium P concentration (EPC 0 ), the soluble reactive phosphorus (SRP) concentration at which sediment neither sorbs nor desorbs P. We used structural equation modeling to identify direct and indirect drivers of EPC 0 . Stream sediment was a P sink at 40 % and 67 % of sites in 2019 and 2021, respectively. During both years, spatial variation in EPC 0 was shaped by stream water SRP concentrations, sediment P saturation, and sediment physicochemical characteristics. In turn, SRP concentrations and sediment P saturation (PSR) were influenced by agricultural land use and stream size. Effect of stream size differed among years with stream size having a greater effect on SRP in 2019 and on PSR in 2021. Streambed sediment is currently a net P sink across the sites sampled in the Maumee River network during summer, but sediment at these locations, especially sites in headwater streams, may become a P source if stream water SRP concentrations decrease. Our results improve the understanding of watershed- and reach-scale controls on EPC 0 but also indicate the need for further research on how changes in SRP concentration as a result of conservation management implementation influences the role of streambed sediment in P transport to Lake Erie.

Indiana, Michigan, Ohio↗

USGS2022

Failure to achieve recommended environmental flows coincides with declining fish populations: Long-term trends in regulated and unregulated rivers

Dams can be operated to mimic components of the natural flow regime to minimise impacts on downstream ecosystems. However, infrastructure, societal needs, water management, and catchment runoff constrain which and when flow regime attributes can be mimicked. We compared fish assemblage responses, including native and non-native species, over 2 decades of managed environmental flows to those in a river retaining a relatively unaltered flow regime. Both of these arid-land rivers are within the overallocated Colorado River basin and have experienced declines in catchment runoff over the past 20 years. We predicted that fish–flow relationships would be conserved across time and between managed and unmanaged rivers. Declines in flow in both rivers coincided with declines in some native fishes, and more native and non-native fish species exhibited declines in the managed river than in the unmanaged river. Our ability to detect previously documented native fish–flow relationships diminished in the managed river system because established environmental flow targets were not met due to water management, but we detected these fish–flow relationships in the unmanaged river. Our results suggest declining catchment runoff and increased consumptive water use could reduce the effectiveness of environmental flows that have lower priority in most years.

Freshwater Biology↗

USGS1999

An assessment of stream habitat and nutrients in the Elwha River basin: implications for restoration

The Elwha River was once famous for its 10 runs of anadromous salmon which included chinook that reportedly exceeded 45 kilograms. These runs either ceased to exist or were significantly depleted after the construction of the Elwha (1912) and Glines Canyon (1927) Dams, which resulted in the blockage of more than 113 kilometers of mainstem river and tributary habitat. In 1992, in response to the loss of the salmon runs in the Elwha River Basin, President George Bush signed the Elwha River Ecosystem and Fisheries Restoration Act, which authorizes the Secretary of the Interior to remove both dams for ecosystem restoration. The objective of this U.S. Geological Survey (USGS) study was to begin describing baseline conditions for assessing changes that will result from restoration. The first step was to review available physical, chemical, and biological information on the Elwha River Basin. We found that most studies have focused on anadromous fish and habitat and that little information is available on water quality, habitat classification, geomorphic processes, and riparian and aquatic biological communities. There is also a lack of sufficient data on baseline conditions for assessing future changes if restoration occurs. The second component of this study was to collect water-quality and habitat data, filling information gaps. This information will permit a better understanding of the relation between physical habitat and nutrient conditions and changes that may result from salmon restoration. We collected data in the fall of 1997 and found that the concentrations of nitrogen and phosphorous were generally low, with most samples having concentrations below detection limits. Detectable concentrations of nitrogen were associated with sites in the lower reach of the Elwha River, whereas the few detections of phosphorus were at sites throughout the basin. Nutrient data indicate that the Elwha River and its tributaries are oligotrophic. Results of the stream classification indicated that most of the habitat that would be usable by salmon is found in the mainstem of the Elwha River due to natural gradient barriers at the lower end of most tributaries. Habitat is diverse in the mainstem due to large woody debris accumulations and the existence of secondary channels. We concluded that restoring salmon runs to the Elwha River system will affect the ecosystem profoundly. Decaying carcasses of migrating salmon will be the source of large quantities of nutrients to the Elwha River. The complex instream habitat of the mainstem will enhance cycling of these nutrients because carcasses will be retained long enough to be assimilated thereby increasing primary and secondary production, size of immature salmonids, and overall higher salmon recruitment.

Washington↗

USGS2003

Sedimentation rates in the marshes of Sand Lake National Wildlife Refuge

Impoundments located within river systems in the Northern Great Plains are vulnerable to sediment inputs because intensive agriculture in watersheds has increased soil erosion and sediments in rivers. At the request of the U.S. Fish and Wildlife Service (FWS), we evaluated the vertical accretion of sediment in the Mud Lake impoundment of Sand Lake National Wildlife Refuge (NWR), Brown County, South Dakota. The Mud Lake impoundment was created in 1936 by constructing a low-head dam across the James River. We collected sediment cores from the Mud Lake impoundment during August 2000 for determination of vertical accretion rates. Accretion rates were estimated using cesium-13 7 and lead-210 isotopic dating techniques to estimate sediment accretion over the past 100 years. Accretion rates were greatest near the dam (1.3 cm yr-1) with less accretion (0.2 cm yr-1) occurring in the upper reaches of Mud Lake. As expected, accretion was highest near the dam where water velocities and greater water depth facilitates sediment deposition. Higher rates of sedimentation (accretion> 2.0 cm year-1) occurred during the 1990s when river flows were especially high. Since 1959, sediment accretion has reduced maximum pool depth of Mud Lake near the dam by 55 cm. Assuming that sediment accretion rates remain the same in the future, we project Mud Lake will have a maximum pool depth of 77 and 51 cm by 2020 and 2040, respectively. Over this same time frame, water depths in the upper reaches of Mud Lake would be reduced to< 2 cm. Projected future loss of water depth will severely limit the ability of managers to manipulate pool levels in Mud Lake to cycle vegetation and create interspersion of cover and water to meet current wildlife habitat management objectives. As predicted for major dams constructed on rivers throughout the world, Mud Lake will have a finite life span. Our data suggests that the functional life span of Mud Lake since construction will be < 100 years. We anticipate that over the next 20 years, sediments entering Mud Lake will reduce water depths to the point that current wildlife management objectives cannot be achieved through customary water-level manipulations. Sedimentation impacts are not unique to the Sand Lake NWR. It is widely accepted that impoundments trap sediments and shallow impoundments, such as those managed by the FWS, are especially vulnerable. Given the ecological impacts associated with loss of water depths, we recommend that managers begin evaluating the long-term wildlife management goals for the refuge relative to associated costs and feasibility of options available to enhance and maximize the life span of existing impoundments, including upper watershed management.

Report↗