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Design and methods of the Midwest Stream Quality Assessment (MSQA), 2013

During 2013, the U.S. Geological Survey (USGS) National Water-Quality Assessment Project (NAWQA), in collaboration with the USGS Columbia Environmental Research Center, the U.S. Environmental Protection Agency (EPA) National Rivers and Streams Assessment (NRSA), and the EPA Office of Pesticide Programs assessed stream quality across the Midwestern United States. This Midwest Stream Quality Assessment (MSQA) simultaneously characterized watershed and stream-reach water-quality stressors along with instream biological conditions, to better understand regional stressor-effects relations. The MSQA design focused on effects from the widespread agriculture in the region and urban development because of their importance as ecological stressors of particular concern to Midwest region resource managers. A combined random stratified selection and a targeted selection based on land-use data were used to identify and select sites representing gradients in agricultural intensity across the region. During a 14-week period from May through August 2013, 100 sites were selected and sampled 12 times for contaminants, nutrients, and sediment. This 14-week water-quality “index” period culminated with an ecological survey of habitat, periphyton, benthic macroinvertebrates, and fish at all sites. Sediment was collected during the ecological survey for analysis of sediment chemistry and toxicity testing. Of the 100 sites, 50 were selected for the MSQA random stratified group from 154 NRSA sites planned for the region, and the other 50 MSQA sites were selected as targeted sites to more evenly cover agricultural and urban stressor gradients in the study area. Of the 50 targeted sites, 12 were in urbanized watersheds and 21 represented “good” biological conditions or “least disturbed” conditions. The remaining 17 targeted sites were selected to improve coverage of the agricultural intensity gradient or because of historical data collection to provide temporal context for the study. This report provides a detailed description of the MSQA study components, including surveys of ecological conditions, routine water sampling, deployment of passive polar organic compound integrative samplers, and stream sediment sampling at all sites. Component studies that were completed to provide finer scale temporal data or more extensive analysis at selected sites, included continuous water-quality monitoring, daily pesticide sampling, laboratory and in-stream water toxicity testing efforts, and deployment of passive suspended-sediment samplers.

Illinois, Indiana, Iowa, Kansas, Kentucky, Michiga

Vegetation classification and mapping, Vicksburg National Military Park, Mississippi

Executive Summary The National Park Service (NPS) Gulf Coast Inventory and Monitoring Network, with the support of the National Park Service Vegetation Inventory completed vegetation classification and mapping for Vicksburg National Military Park (VICK), in Warren County, Mississippi, from 2004 to 2010. VICK is one of more than 250 NPS units to be covered by the Vegetation Inventory. Methods and procedures follow those of the NPS Vegetation Inventory as of August, 2012 ( http://science.nature.nps.gov/im/inventory/veg/index.cfm ). Ecologists collected floristic and environmental data from 45 vegetation field plots and classified and described 13 plant community types corresponding to US National Vegetation Classification (USNVC) associations from these data. This classification was used to map 712 hectares (1,698 acres) of Vicksburg National Military Park, in ten map classes corresponding to vegetation associations and two non-vegetated land cover classes, from a digital orthomosaic created from 1:24,000 color infrared aerial photographs and digital elevation model (DEM) data. Methods used to delineate stands varied according to vegetation type and were a combination of incorporating stand boundaries from an existing map, new “heads-up” interpretation and modeling of digital environmental spatial data. A thematic accuracy assessment collected vegetation data from 118 field observations stratified across the vegetation classes. The overall accuracy of the vegetation map was estimated to be 60.5% at the thematic level of USNVC association and 92.4% at the thematic level of USNVC group. Estimates of areas of vegetation types, as adjusted for mapping error, were calculated for all types mapped and/or observed during the thematic accuracy assessment. An important finding of this study is that the composition of the forests of VICK is substantially different from that described by earlier, more qualitative, accounts. Implications of these findings and possible applications of the data for resource monitoring and management are presented. This report summarizes the methods and general results of the Vegetation Inventory for Vicksburg National Military Park. Appendices include descriptions of vegetation types, a field key to the types, a list of plant species, and accuracy assessment contingency tables. This report is supplemented by the project data, which include: spatial database containing map polygon attributes. Geospatial products are in Universal Transverse Mercator (UTM) projection, Zone 15, using the North American Datum of 1983. all field data (plot, observation point, and accuracy assessment point) stored in a Microsoft Access database metadata for all digital products The data and reports produced by this investigation reside at: https://irma.nps.gov/App/ and/or at: http://biology.usgs.gov/npsveg/

Mississippi

Sedimentation survey of Lago Dos Bocas, Utuado, Puerto Rico, January 2010

Lago Dos Bocas reservoir was completed in 1942 to provide water for hydroelectric power generation along the northern coast of Puerto Rico. The reservoir had an original storage capacity of 37.50 million cubic meters (Mm3). The dam is located about 9 kilometers (km) northeast of the town of Utuado, immediately downstream of the original confluence of the Río Grande de Arecibo and the Río Caonillas (fig. 1). The Puerto Rico Electric Power Authority (PREPA) owns and operates the Lago Dos Bocas reservoir, and since 1996, the reservoir has become an essential part of the Puerto Rico Aqueduct and Sewer Authority (PRASA) North Coast Superaqueduct Project. The Superaqueduct is supplied by controlled releases for hydroelectric power generation that replenish the public-supply raw-water intake pool located about 10 km downstream from the Lago Dos Bocas Dam (fig. 1). As of 2005, the Superaqueduct supplies about 4.03 cubic meters per second (m 3 /s) (348,192 cubic meters per day [m 3 /d]) of potable water to communities along the northern coast, from Arecibo to the San Juan metropolitan area. Because of the importance of the reservoir to the North Coast Superaqueduct, the U.S. Geological Survey (USGS), in cooperation with PRASA, conducted a sedimentation survey of Lago Dos Bocas in January 2009. The results of this survey were used to estimate the useful life and the firm yield of the reservoir, and evaluate the need to dredge the reservoir.

Puerto Rico

Bathymetry and digital elevation models of Coyote Creek and Alviso Slough, South San Francisco Bay, California

In 2010, the U.S. Geological Survey (USGS), Pacific Coastal and Marine Science Center completed three cruises to map the bathymetry of the main channel and shallow intertidal mudflats in the southernmost part of south San Francisco Bay. The three surveys were merged to generate comprehensive maps of Coyote Creek (from Calaveras Point east to the railroad bridge) and Alviso Slough (from the bay to the town of Alviso) to establish baseline bathymetry prior to the breaching of levees adjacent to Alviso and Guadalupe Sloughs as part of the South Bay Salt Pond Restoration Project ( http://www.southbayrestoration.org ). Since 2010, the USGS has conducted fourteen additional surveys to monitor bathymetric change in this region as restoration progresses. The bathymetric surveys were conducted using the state-of-the-art research vessel R/V Parke Snavely outfitted with an interferometric sidescan sonar for swath mapping in extremely shallow water. This publication provides high-resolution bathymetric data collected by the USGS. For the 2010 baseline survey we have merged the bathymetry with aerial lidar data that were collected for the USGS during the same time period to create a seamless, high-resolution digital elevation model (DEM) of the study area. The series of bathymetric datasets are provided at 1 m resolution and the 2010 bathymetric/topographic DEM at 2 m resolution. The data are formatted as both X, Y, Z text files and ESRI Arc ASCII files that are accompanied by Federal Geographic Data Committee (FGDC) compliant metadata.

California

Overview of the Texas Source Water Assessment Project

The 1996 Amendments to the Safe Drinking Water Act require, for the first time, that each state prepare a source water assessment for all PWS. Previously, Federal regulations focused on sampling and enforcement with emphasis on the quality of delivered water. These Amendments emphasize the importance of protecting the source water. States are required to determine the drinking-water source, the origin of contaminants monitored or the potential contaminants to be monitored, and the intrinsic susceptibility of the source water. Under the amendments to the Act, States must create SWAP Programs. The programs must include an individual source water assessment for each public water system regulated by the State. These assessments will determine whether an individual drinking water source is susceptible to contamination. During 1997?99, TNRCC and USGS staff met as subject-matter working groups to develop an approach to conducting Source Water Susceptibility Assessments (SWSA) and a draft workplan. The draft workplan was then presented to and reviewed by various stakeholder and technical advisory groups. Comments and suggestions from these groups were considered, and a final workplan was produced and presented to the EPA. After EPA approval, work formally began on the Texas SWAP Project. The project has an expected completion date of September 2002. At that time, initial SWSA of all Texas public water supplies should be complete. Ground-water supplies can be considered susceptible if a possible source of contamination (PSOC) exists in the contributing area for the public-supply well field or spring, the contaminant travel time to the well field or spring is short, and the soil zone, vadose zone, and aquifer-matrix materials are unlikely to adequately attenuate the contaminants associated with the PSOC. In addition, particular types of land use/cover within the contributing area may cause the supply to be deemed more susceptible to contamination. Finally, detection of various classes of constituents in water from wells in the vicinity of a public supply well may indicate susceptibility of the public-supply well even though there may be no identifiable PSOC or land use activity. Surface-water supplies are by nature susceptible to contamination from both point and non-point sources. The degree of susceptibility of a PWS to contamination can vary and is a function of the environmental setting, water and wastewater management practices, and land use/cover within a water supply's contributing watershed area. For example, a PWS intake downstream from extensive urban development may be more susceptible to non-point source contamination than a PWS intake downstream from a forested, relatively undeveloped watershed. Surface-water supplies are also susceptible to contamination from point sources, which may include permitted discharges, as well as accidental spills or other introduction of contaminants.

Texas

Topographic and hydrographic GIS datasets for the Afghan Geological Survey and U.S. Geological Survey 2013 mineral areas of interest

Afghanistan is endowed with a vast amount of mineral resources, and it is believed that the current economic state of the country could be greatly improved through investment in the extraction and production of these resources. In 2007, the “Preliminary Non-Fuel Resource Assessment of Afghanistan 2007” was completed by members of the U.S. Geological Survey and Afghan Geological Survey (Peters and others, 2007). The assessment delineated 20 mineralized areas for further study using a geologic-based methodology. In 2011, a follow-on data product, “Summaries and Data Packages of Important Areas for Mineral Investment and Production Opportunities of Nonfuel Minerals in Afghanistan,” was released (Peters and others, 2011). As part of this more recent work, geologic, geohydrologic, and hyperspectral studies were carried out in the areas of interest (AOIs) to assess the location and characteristics of the mineral resources. The 2011 publication included a dataset of 24 identified AOIs containing subareas, a corresponding digital elevation model (DEM), elevation contours, areal extent, and hydrography for each AOI. In 2012, project scientists identified five new AOIs and two subareas in Afghanistan. These new areas are Ahankashan, Kandahar, Parwan, North Bamyan, and South Bamyan. The two identified subareas include Obatu-Shela and Sekhab-ZamtoKalay, both located within the larger Kandahar AOI. In addition, an extended Kandahar AOI is included in the project for water resource modeling purposes. The dataset presented in this publication consists of the areal extent of the five new AOIs, two subareas, and the extended Kandahar AOI, elevation contours at 100-, 50-, and 25-meter intervals, an enhanced DEM, and a hydrographic dataset covering the extent of the new study area. The resulting raster and vector layers are intended for use by government agencies, developmental organizations, and private companies in Afghanistan to assist with mineral assessments, monitoring, management, and investment.

Open-File Report

Blood protozoa of free-living birds

Blood protozoa were first reported from wild birds in 1884. Since then numerous surveys throughout the world have demonstrated their presence in a wide variety of hosts and localities with continuing designations of new species. Taxonomic determinations include parasites in the genera Plasmodium, Haemoproteus, Leucocytozoon, Babesia, Lankesterella and Trypanosoma. Transmission of Plasmodium by mosquitoes was demonstrated with a bird parasite before these insects were proven as vectors of human malaria. All the genera under consideration require an insect vector to complete their life-cycles and susceptible vectors have been demonstrated. Most experimental work on the blood protozoa of birds has been carried on with captive birds. An extensive volume of research has been conducted on Plasmodium because of its close similarity to malaria in man. Field studies that would provide information on the epizootiology of occurrence of these parasites in wild populations have been very limited, mainly confined to single blood film surveys. Such data are inadequate to provide an understanding of true prevalence or incidence or of factual knowledge of their impact on the wild population. Mechanisms for procuring such information are available in some cases and can be developed to fit other situations. Isodiagnosis, inoculation of blood from wild birds into susceptible captive hosts, has revealed a prevalence of over 60 % for Plasmodium in situations where microscope examination of single peripheral blood preparations yielded less than 1 %. Culture of bone marrow collected by biopsy demonstrates high prevalence of trypanosomes even when none are evident from microscopic examination of blood. Often preparations of tissues collected at necropsy reveal Leucocytozoon and Lankesterella when examination of peripheral blood gave no indication of infection. Methods developed by bird ringers provide techniques for obtaining repeat examinations of free-living birds that can yield further pertinent data. The use that has been made of these techniques, beyond the mere procurement of a single blood film, is reviewed from the standpoint of providing knowledge of the epizootiology of the blood protozoa of birds and their further potential is projected.

Book chapter

Factors affecting benthic macroinvertebrate health in the City of Roanoke, Virginia, 2020–2023

Major waterways in the City of Roanoke (City) have failed to meet Virginia’s aquatic life designated use since 1996. Segments of the upper Roanoke River lack healthy benthic macroinvertebrate communities which prompted a total maximum daily load (TMDL) study by the Virginia Department of Environmental Quality (VDEQ) to identify the most probable stressor(s) causing the impairment. Excess fine sediment was identified as the most probable stressor impairing benthic macroinvertebrates on portions of the Roanoke River in 2006, and a watershed implementation plan published in 2016 required communities within the impaired watershed to implement projects that would reduce the load of fine sediment entering the Roanoke River. Additional benthic macroinvertebrate sampling and stream habitat assessments along the Roanoke River and Tinker Creek (a tributary to the Roanoke River that flows through the City) revealed continued impaired conditions, and subsequent stressor identification analysis was completed in 2023. Samples collected downstream of the City on the Roanoke River and Tinker Creek generally showed more impaired conditions relative to samples collected at locations upstream of the City. Based on this evaluation, sediment and sediment-bound polychlorinated biphenyls (PCBs) were identified as probable stressors while specific conductance, total nitrogen, and sediment metals were possible stressors in Tinker Creek; however, only a sediment TMDL target was identified to address impaired benthic macroinvertebrate communities. In the Roanoke River upstream of the Niagara Dam, sediment and total phosphorus were identified as probable stressors, sediment polycyclic aromatic hydrocarbons and sediment PCB were considered possible stressors; however, the TMDL target was only for total phosphorus. The City partnered with the U.S. Geological Survey (USGS) in 2016 to continuously monitor water quality and streamflow conditions on a major tributary of Tinker Creek, Lick Run, and by 2020, four similar monitoring stations were installed on the Roanoke River and Tinker Creek near the locations of benthic macroinvertebrate sampling. Monitored parameters included streamflow and/or gage height (water level), water temperature, pH, dissolved oxygen, specific conductance, and turbidity. Turbidity is a measure of the relative clarity of the water and was previously used to model suspended-sediment concentrations at the monitoring stations. The City also contracted Kirk Environmental, LLP (KE) to collect benthic macroinvertebrate samples and stream habitat assessments near the locations of the water-quality monitoring stations. Identified benthic macroinvertebrates were used to calculate the Virginia Stream Condition Index (SCI), a multi-metric index composed of eight biological attributes that represent elements of the structure and function of the benthic macroinvertebrate community that measure diversity, composition, and tolerance to pollution. Study objective: In this report, benthic macroinvertebrate samples and stream habitat assessment scores collected at four locations on the Roanoke River and Tinker Creek by KE and the VDEQ between 2020 and 2023 were compared to measured water-quality and streamflow conditions prior to sampling to evaluate patterns between benthic macroinvertebrate health, water quality, and hydrology.

Virginia

Digital data for the geologic framework of the Alaska Peninsula, southwest Alaska, and the Alaska Peninsula terrane

These digital databases are the result of the compilation and reinterpretation of published and unpublished 1:250,000- and 1:63,360-scale mapping. The map area covers approximately 62,000 sq km (23,000 sq mi) in land area and encompasses much of 13 1:250,000-scale quadrangles on the Alaska Peninsula in southwestern Alaska. The compilation was done as part of the U.S. Geological Survey's Alaska Mineral Resource Assessment project (AMRAP), whose goal was create and assemble geologic, geochemical, geophysical, and other data in order to perform mineral resource assessments on a quadrangle, regional or statewide basis. The digital data here was created to assist in the completion of a regional mineral resource assessment of the Alaska Peninsula. Mapping on the Alaska Peninsula under AMRAP began in 1977 in the Chignik and Sutwik Island 1:250,000 quadrangles (Detterman and others, 1981). Continued mapping in the Ugashik, bristol bay, and northwestern Karluk quadrangles (Detterman and others, 1987) began in 1979, followed by the Mount Katmai, eastern Naknek, and northwestern Afognak quadrangles (Riehle and others, 1987; Riehle and others, 1993), the Port Moller, Stepovak bay, and Simeonof Island quadrangles (Wilson and others, 1995) beginning in 1983. Work in the Cold bay and False Pass quadrangles (Wilson and others, 1992 [Superseded by Wilson and others 1997, but not incorporated herein]) began in 1986. The reliability of the geologic mapping is variable, based, in part, on the field time spent in each area of the map, the available support, and the quality of the existing base maps. In addition, our developing understanding of the geology of the Alaska Peninsula required revision of earlier maps, such as the Chignik and Sutwik Island quadrangles map (Detterman and others, 1981) to reflect this new knowledge. We have revised the stratigraphic nomenclature (Detterman and others, 1996) and our assignment of unit names to some rocks has been changed. All geologic maps on which this compilation is based were published using the Universal Transverse Mercator projection (UTM; Zones 3, 4, and 5). because of the distortions use of the UTM projection would produce on a map of small scale and large area, the plot and graphics files derived from this data are plotted using a more appropriate Albers Equal-area projection for publication.

Alaska

Gulf Coast vulnerability assessment: Mangrove, tidal emergent marsh, barrier islands and oyster reef

Climate, sea level rise, and urbanization are undergoing unprecedented levels of combined change and are expected to have large effects on natural resources—particularly along the Gulf of Mexico coastline (Gulf Coast). Management decisions to address these effects (i.e., adaptation) require an understanding of the relative vulnerability of various resources to these stressors. To meet this need, the four Landscape Conservation Cooperatives along the Gulf partnered with the Gulf of Mexico Alliance to conduct this Gulf Coast Vulnerability Assessment (GCVA). Vulnerability in this context incorporates exposure and sensitivity to threats (potential impact), coupled with the adaptive capacity to mitigate those threats. Potential impact and adaptive capacity reflect natural history features of target species and ecosystems. The GCVA used an expert opinion approach to qualitatively assess the vulnerability of four ecosystems: mangrove, oyster reef, tidal emergent marsh, and barrier islands, and a suite of wildlife species that depend on them. More than 50 individuals participated in the completion of the GCVA, facilitated via Ecosystem and Species Expert Teams. Of the species assessed, Kemp’s ridley sea turtle was identified as the most vulnerable species across the Gulf Coast. Experts identified the main threats as loss of nesting habitat to sea level rise, erosion, and urbanization. Kemp’s ridley also had an overall low adaptive capacity score due to their low genetic diversity, and higher nest site fidelity as compared to other assessed species. Tidal emergent marsh was the most vulnerable ecosystem, due in part to sea level rise and erosion. In general, avian species were more vulnerable than fish because of nesting habitat loss to sea level rise, erosion, and potential increases in storm surge. Assessors commonly indicated a lack of information regarding impacts due to projected changes in the disturbance regime, biotic interactions, and synergistic effects in both the species and habitat assessments. Many of the assessors who focused on species also identified data gaps regarding genetic information, phenotypic plasticity, life history, and species responses to past climate change and sea level rise. Regardless of information gaps, the results from the GCVA can be used to inform Gulf-wide adaptation plans. Given the scale of climatic impacts, coordinated efforts to address Gulf-wide threats to species and ecosystems will enhance the effectiveness of management actions and also have the potential to maximize the efficacy of limited funding.

Alabama, Florida, Louisiana, Mississippi, Texas

Observations of ocean circulation and sediment transport experiment offshore of Fire Island, NY

Researchers from the U.S. Geological Survey (USGS) Woods Hole Coastal and Marine Science Center (WHCMSC), in collaboration with Coastal Carolina University (CCU) and University of South Carolina (USC), conducted a scientific field study to investigate the ocean circulation and sediment transport processes offshore of Fire Island, NY. Although the physical processes along the entire linear extent of Fire Island (~50 km) are of interest to the project, one particular region of focus is at the western end of the island where offshore sand ridges out to depths of 20 m extend across the inner shelf and connect to the near-shore bar system. The primary objective was to measure the physical processes around the sand ridges, including circulation patterns, wave parameters, bottom stress, and suspended sediment. Transects of instrumentation were positioned along and across the crests and troughs of the ridge field. A site at the top of a ridge and a site at the bottom of an adjacent trough were each populated with two tripods designed to provide high-resolution measurements near the sea-bed to record sediment re-suspension events. Measurements at these two sites include near bottom velocity profiles, acoustic Doppler velocimeters, pressure, optical transmission and backscatter at high sampling rates. Other measurements include upward looking velocity profiles, temperature, salinity, sonar images and profiles, and sediment size classes. Five smaller tripods were deployed to complete lines alongshore and across shore over a 5 km area to provide a regional picture. These tripods recorded upward looking velocity profiles and near bottom temperature, pressure and salinity. Surface buoys marked the position of the tripods and collected surface measurements at six of the sites. One buoy gathered meteorological measurements. The sites were occupied from January to April, 2012. This deployment was similar to previous efforts off Cape Hatteras, NC, in 2009, and is part of an ongoing effort to understand regional patterns in circulation and sediment transport and the interaction of inner shelf and near shore processes. New instrumentation for the USGS was introduced, including a variety of current and wave measurement equipment, acquisition and telemetry in near-realtime of the weather data, time series sonar imaging equipment, and anti-fouling wipers. Preliminary results suggest a complex and subtle relationship between wind and across shore current velocity in this region, and a more straightforward relationship between winds and alongshore currents. This paper also includes a preliminary report on the effectiveness of new measurement techniques used during this experiment.

New York

Archive of Digital Chirp Subbottom Profile Data Collected During USGS Cruise 14BIM05 Offshore of Breton Island, Louisiana, August 2014

From August 11 to 31, 2014, the U.S. Geological Survey ( USGS ), in cooperation with the U.S. Fish and Wildlife Service ( USFWS ), conducted a geophysical survey to investigate the geologic controls on barrier island framework and long-term sediment transport offshore of Breton Island, Louisiana as part of a broader USGS study on Barrier Island Mapping ( BIM ). Additional details related to this activity can be found by searching the USGS's Coastal and Marine Geoscience Data System (CMGDS), for field activity 2014-317-FA (also known as 14BIM05). These surveys were funded through the USGS Coastal and Marine Geology Program ( CMGP ) and the Louisiana Outer Coast Early Restoration Project. This report serves as an archive of unprocessed digital chirp subbottom data, trackline maps, navigation files, Geographic Information System ( GIS ) files, Field Activity Collection System ( FACS ) logs, and formal Federal Geographic Data Committee ( FGDC ) metadata. Gained digital images of the seismic profiles are also provided. Refer to the Abbreviations page for explanations of acronyms and abbreviations used in this report. All chirp systems use an acoustic signal of continuously varying frequency; the EdgeTech 512i system used during this survey produced high-resolution, shallow-penetration (typically less than 50 milliseconds [ ms] ) profile images of sub-seafloor stratigraphy. The towfish contains a transducer that transmits and receives acoustic energy and typically is towed 1–2 meters ( m ) below the sea surface. As transmitted acoustic energy intersects density boundaries, such as the seafloor or sub-surface sediment layers, some energy is reflected back toward the transducer, received, and recorded by a Personal Computer ( PC) -based seismic acquisition system. This process is repeated at regular intervals (for example, 0.125 seconds ( s) ) and returned energy is recorded for a specific duration (for example, 50 ms ). In this way, a two-dimensional ( 2-D ) vertical image of the shallow geologic structure beneath the ship's track is produced. Figure 2 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters and table 2 for trackline statistics. The archived trace data are in standard SEG Y rev. 0 format (Barry and others, 1975); the first 3,200 bytes of the card image header are in American Standard Code for Information Interchange ( ASCII ) format instead of Extended Binary Coded Decimal Interchange Code ( EBCDIC ) format. The SEG Y files are available on the DVD version of this report or online, downloadable via the USGS Coastal and Marine Geoscience Data System ( http://cmgds.marine.usgs.gov ). The data are also available for viewing using GeoMapApp ( http://www.geomapapp.org ) and Virtual Ocean ( http://www.virtualocean.org ) multi-platform open source software. The Web version of this archive does not contain the SEG Y trace files. To obtain the complete DVD archive, contact USGS Information Services at 1-888-ASK-USGS or infoservices@usgs.gov. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix ( SU ) (Cohen and Stockwell, 2010). See the How To Download SEG Y Data page for download instructions. The printable profiles are provided as Graphics Interchange Format ( GIF ) images processed and gained using SU software and can be viewed from the Profiles page or by using the links located on the trackline maps; refer to the Software page for links to example SU processing scripts.

Louisana

The Gulf Coast Vulnerability Assessment: Mangrove, Tidal Emergent Marsh, Barrier Islands, and Oyster Reef

Climate, sea level rise, and urbanization are undergoing unprecedented levels of combined change and are expected to have large effects on natural resources—particularly along the Gulf of Mexico coastline (Gulf Coast). Management decisions to address these effects (i.e., adaptation) require an understanding of the relative vulnerability of various resources to these stressors. To meet this need, the four Landscape Conservation Cooperatives along the Gulf partnered with the Gulf of Mexico Alliance to conduct this Gulf Coast Vulnerability Assessment (GCVA). Vulnerability in this context incorporates the aspects of exposure and sensitivity to threats, coupled with the adaptive capacity to mitigate those threats. Potential impact and adaptive capacity reflect natural history features of target species and ecosystems. The GCVA used an expert opinion approach to qualitatively assess the vulnerability of four ecosystems: mangrove, oyster reef, tidal emergent marsh, and barrier islands, and a suite of wildlife species that depend on them. More than 50 individuals participated in the completion of the GCVA, facilitated via Ecosystem and Species Expert Teams. Of the species assessed, Kemp’s ridley sea turtle was identified as the most vulnerable species across the Gulf Coast. Experts identified the main threats as loss of nesting habitat to sea level rise, erosion, and urbanization. Kemp’s ridley also had an overall low adaptive capacity score due to their low genetic diversity, and higher nest site fidelity as compared to other assessed species. Tidal emergent marsh was the most vulnerable ecosystem, due in part to sea level rise and erosion. In general, avian species were more vulnerable than fish because of nesting habitat loss to sea level rise, erosion, and potential increases in storm surge. Assessors commonly indicated a lack of information regarding impacts due to projected changes in the disturbance regime, biotic interactions, and synergistic effects in both the species and habitat assessments. Many of the assessors who focused on species also identified data gaps regarding genetic information, phenotypic plasticity, life history, and species responses to past climate change and sea level rise. Regardless of information gaps, the results from the GCVA can be used to inform Gulf-wide adaptation plans. Given the scale of climatic impacts, coordinated efforts to address Gulf-wide threats to species and ecosystems will enhance the effectiveness of management actions and also have the potential to maximize the efficacy of limited funding.

Report

Naturally Occurring Arsenic in Ground Water, Norman, Oklahoma, 2004, and Remediation Options for Produced Water

In 2000, the U.S. Environmental Protection Agency (EPA) reviewed the arsenic drinking water standard for public water supplies. Considering the available research and statistics on the health effects of arsenic ingestion, the EPA reduced the Maximum Contaminant Level (MCL) for public drinking water from 50 micrograms per liter (?g/L) to 10 ?g/L (U.S. Environmental Protection Agency, 2001a). As a result of the more stringent standard, the EPA estimates that about 3,000 public water providers across the United States must take action to meet the new standard before it becomes effective on January 23, 2006 (U.S. Environmental Protection Agency, 2001b). The City of Norman (City) is one of several Oklahoma municipalities affected by the new arsenic standard. About 20 percent of Norman?s water is supplied by wells completed in the Central Oklahoma (Garber-Wellington) aquifer; the rest is supplied by Lake Thunderbird (fig. 1) or purchased from Oklahoma City. The Norman well field is composed of 24 active wells, and water produced from about half of the wells will not be in compliance with the new MCL (figs. 2 and 3). Chemical treatment of water with elevated arsenic is possible, but it is generally cost prohibitive. Another costly solution is simply to abandon the high-arsenic wells and replace them with new wells in low-arsenic areas. In the next phase of well construction beginning in 2005, the City plans to construct as many as 30 new wells in northeast Norman (Bryan Mitchell, City of Norman, oral commun., 2005). The new wells will replace production lost to the new arsenic standard and add new production to keep pace with rapidly growing consumer demand. Well modification to exclude arsenic-bearing water from existing wells is a more cost-effective solution, but it requires a great deal of knowledge about local aquifer properties and individual well dynamics to decide which wells are good candidates for modification. With the goal of determining if well modification can be used to bring some of Norman?s high-arsenic wells into compliance with the new arsenic standard, the EPA Office of Research and Development (ORD) initiated a three-year research project in 2003 with participation from the U.S. Geological Survey (USGS), Oklahoma State University, and the City of Norman. The primary objectives of the project are to: (1) determine where naturally occurring arsenic is entering wells by collecting water samples at different depths, (2) investigate the utility of new methods for collecting water-quality data in a pumping well, (3) better understand the stratigraphy and composition of aquifer rocks, (4) assess 10 wells for the possibility of arsenic remediation by well modification, and (5) evaluate the effectiveness of well modification in bringing marginal wells into compliance with the new arsenic MCL. The purpose of this report is to describe the occurrence of arsenic in ground water near Norman, Oklahoma, and available options for reducing arsenic concentrations in produced ground water.

Fact Sheet

Impacts of climate change on biodiversity, ecosystems, and ecosystem services: technical input to the 2013 National Climate Assessment

Ecosystems, and the biodiversity and services they support, are intrinsically dependent on climate. During the twentieth century, climate change has had documented impacts on ecological systems, and impacts are expected to increase as climate change continues and perhaps even accelerates. This technical input to the National Climate Assessment synthesizes our scientific understanding of the way climate change is affecting biodiversity, ecosystems, ecosystem services, and what strategies might be employed to decrease current and future risks. Building on past assessments of how climate change and other stressors are affecting ecosystems in the United States and around the world, we approach the subject from several different perspectives. First, we review the observed and projected impacts on biodiversity, with a focus on genes, species, and assemblages of species. Next, we examine how climate change is affecting ecosystem structural elements—such as biomass, architecture, and heterogeneity—and functions—specifically, as related to the fluxes of energy and matter. People experience climate change impacts on biodiversity and ecosystems as changes in ecosystem services; people depend on ecosystems for resources that are harvested, their role in regulating the movement of materials and disturbances, and their recreational, cultural, and aesthetic value. Thus, we review newly emerging research to determine how human activities and a changing climate are likely to alter the delivery of these ecosystem services. This technical input also examines two cross-cutting topics. First, we recognize that climate change is happening against the backdrop of a wide range of other environmental and anthropogenic stressors, many of which have caused dramatic ecosystem degradation already. This broader range of stressors interacts with climate change, and complicates our abilities to predict and manage the impacts on biodiversity, ecosystems, and the services they support. The second cross-cutting topic is the rapidly advancing field of climate adaptation, where there has been significant progress in developing the conceptual framework, planning approaches, and strategies for safeguarding biodiversity and other ecological resources. At the same time, ecosystem-based adaptation is becoming more prominent as a way to utilize ecosystem services to help human systems adapt to climate change. In this summary, we present key findings of the technical input, focusing on themes that can be found throughout the report. Thus, this summary takes a more integrated look at the question of how climate change is affecting our ecological resources, the implications for humans, and possible response strategies. This integrated approach better reflects the impacts of climate in the real world, where changes in ecosystem structure or function will alter the viability of different species and the efficacy of ecosystem services. Likewise, adaptation to climate change will simultaneously address a range of conservation goals. Case studies are used to illustrate this complete picture throughout the report; a snapshot of one case study, 2011 Las Conchas, New Mexico Fire , is included in this summary.

Report

Alaska Geochemical Database Version 3.0 (AGDB3)—Including “Best Value” Data Compilations for Rock, Sediment, Soil, Mineral, and Concentrate Sample Media

The Alaska Geochemical Database Version 3.0 (AGDB3) contains new geochemical data compilations in which each geologic material sample has one “best value” determination for each analyzed species, greatly improving speed and efficiency of use. Like the Alaska Geochemical Database Version 2.0 before it, the AGDB3 was created and designed to compile and integrate geochemical data from Alaska to facilitate geologic mapping, petrologic studies, mineral resource assessments, definition of geochemical baseline values and statistics, element concentrations and associations, environmental impact assessments, and studies in public health associated with geology. This relational database, created from data-bases and published datasets of the U.S. Geological Survey (USGS), Atomic Energy Commission National Uranium Resource Evaluation (NURE), Alaska Division of Geological & Geophysical Surveys (DGGS), U.S. Bureau of Mines, and U.S. Bureau of Land Management serves as a data archive in support of Alaskan geologic and geochemical projects and contains data tables in several different formats describing historical and new quantitative and qualitative geochemical analyses. The analytical results were determined by 112 laboratory and field analytical methods on 396,343 rock, sediment, soil, mineral, heavy-mineral concentrate, and oxalic acid leachate samples. Most samples were collected by personnel of these agencies and analyzed in agency laboratories or, under contracts, in commercial analytical laboratories. These data represent analyses of samples collected as part of various agency programs and projects from 1938 through 2017. In addition, mineralogical data from 18,138 nonmagnetic heavy-mineral concentrate samples are included in this database. The AGDB3 includes historical geochemical data archived in the USGS National Geochemical Database (NGDB) and NURE National Uranium Resource Evaluation-Hydrogeochemical and Stream Sediment Reconnaissance databases, and in the DGGS Geochemistry database. Retrievals from these data-bases were used to generate most of the AGDB data set. These data were checked for accuracy regarding sample location, sample media type, and analytical methods used. In other words, the data of AGDB3 supersedes data in the AGDB and the AGDB2, but the background about the data in these two earlier versions are needed by users of the current AGDB3 to understand what has been done to amend, clean up, correct and format this data. Corrections were entered, resulting in a significantly improved Alaska geochemical dataset, the AGDB3. Data that were not previously in these databases because the data predate the earliest agency geochemical data-bases, or were once excluded for programmatic reasons, are included here in the AGDB3 and will be added to the NGDB and Alaska Geochemistry. The AGDB3 data provided here are the most accurate and complete to date and should be useful for a wide variety of geochemical studies. The AGDB3 data provided in the online version of the database may be updated or changed periodically.

Alaska

U.S. Geological Survey and Bureau of Land Management Cooperative Coalbed Methane Project in the Powder River Basin, Wyoming

The Bureau of Land Management (BLM) Wyoming Reservoir Management Group and the U.S. Geological Survey (USGS) began a cooperative project in 1999 to collect technical and analytical data on coalbed methane (CBM) resources and quality of the water produced from coalbeds in the Wyoming part of the Powder River Basin. The agencies have complementary but divergent goals and these kinds of data are essential to accomplish their respective resource evaluation and management tasks. The project also addresses the general public need for information pertaining to Powder River Basin CBM resources and development. BLM needs, which relate primarily to the management of CBM resources, include improved gas content and gas in-place estimates for reservoir characterization and resource/reserve assessment, evaluation, and utilization. USGS goals include a basinwide assessment of CBM resources, an improved understanding of the nature and origin of coalbed gases and formation waters, and the development of predictive models for the assessment of CBM resources that can be used for such purposes in other basins in the United States (for example, the Bighorn, Greater Green River, and Williston Basins) and in other countries throughout the world (for example, Indonesia, New Zealand, and the Philippines). Samples of coal, produced water, and gas from coalbed methane drill holes throughout the Powder River Basin, many of which are adjacent to several active mine areas (figs. 1, 2), have been collected by personnel in the USGS, BLM Reservoir Management Group, and Casper and Buffalo BLM Field Offices. Sampling was done under confidentiality agreements with 29 participating CBM companies and operators. Analyses run on the samples include coal permeability, coal quality and chemistry, coal petrography and petrology, methane desorption and adsorption, produced-water chemistry, and gas composition and isotopes. The USGS has supplied results to the BLM Reservoir Management Group for their resource management needs, and data are released when the terms of the confidentiality agreements are completed and consent is obtained.

Fact Sheet

Seafloor habitat mapping and classification in Glacier Bay, Alaska: Phase 1 & 2 1996-2004

Glacier Bay is a diverse fjord ecosystem with multiple sills, numerous tidewater glaciers and a highly complex oceanographic system. The Bay was completely glaciated prior to the 1700’s and subsequently experienced the fastest glacial retreat recorded in historical times. Currently, some of the highest sedimentation rates ever observed occur in the Bay, along with rapid uplift (up to 2.5 cm/year) due to a combination of plate tectonics and isostatic rebound. Glacier Bay is the second deepest fjord in Alaska, with depths over 500 meters. This variety of physical processes and bathymetry creates many diverse habitats within a relatively small area (1,255 km 2 ). Habitat can be defined as the locality, including resources and environmental conditions, occupied by a species or population of organisms (Morrison et al 1992). Mapping and characterization of benthic habitat is crucial to an understanding of marine species and can serve a variety of purposes including: understanding species distributions and improving stock assessments, designing special management areas and marine protected areas, monitoring and protecting important habitats, and assessing habitat change due to natural or human impacts. In 1996, Congress recognized the importance of understanding benthic habitat for fisheries management by reauthorizing the Magnuson-Stevens Fishery Conservation and Management Act and amending it with the Sustainable Fisheries Act (SFA). This amendment emphasizes the importance of habitat protection to healthy fisheries and requires identification of essential fish habitat in management decisions. Recently, the National Park Service’s Ocean Stewardship Strategy identified the creation of benthic habitat maps and sediment maps as crucial components to complete basic ocean park resource inventories (Davis 2003). Glacier Bay National Park managers currently have very limited knowledge about the bathymetry, sediment types, and various marine habitats of ecological importance in the Park. Ocean floor bathymetry and sediment type are the building blocks of marine communities. Bottom type and shape affects the kinds of benthic communities that develop in a particular environment as well as the oceanographic conditions that communities are subject to. Accurate mapping of the ocean floor is essential for park manager’s understanding of existing marine communities and will be important in assessing human induced changes (e.g., vessel traffic and commercial fishing), biological change (e.g., rapid sea otter recolonization), and geological processes of change (e.g., deglaciation). Information on animal-habitat relationships, particularly within a marine reserve framework, will be valuable to agencies making decisions about critical habitats, marine reserve design, as well as fishery management. Identification and mapping of benthic habitat provides National Park Service mangers with tools to increase the effectiveness of resource management. The primary objective of this project is to investigate the geological characteristics of the biological habitats of halibut, Dungeness crab, king crab, and Tanner crab within Glacier Bay National Park. Additionally, habitat classification of shallow water regions of Glacier Bay will provide crucial information on the relationship between benthic habitat features and the abundance of benthic prey items for a variety of marine predators, including sea ducks, the rapidly increasing population of sea otters, and other marine mammals.

Alaska