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At least 487 records · Page 27Linked to original sources

USGS2014

Maximizing the social and ecological value of Cape Romain National Wildlife Refuge, South Carolina as the effects of global change processes increase.

Coastal ecosystems in the eastern U.S. have been severely altered by processes associated with human development, including drainage of coastal wetlands, changes in hydrology that alter sediment and freshwater delivery to the coast, land clearing, agricultural and forestry activity, and the construction of seawalls and other structures that “harden” the coast. Sea-level rise and the changing frequency of extreme events associated with climate change are now further degrading the capacity of those ecological and social systems to remain resilient in the face of disturbance, largely through the degradation and loss of land and habitat. The goal was to develop a problem framing that would broadly reflect the type, scale and scope of SLR-adaptation decisions faced by refuges in general, and that could be used by individual refuges to help understand how their specific problems fit into a larger context of SLR planning and implementation. We worked with refuge managers in developing a common frame of reference for some shared SLR-related management problems, while also facilitating communication about these problems with other refuges and with surrounding jurisdictions.

South Carolina↗

USGS2023

Using cyanobacteria and other phytoplankton to assess trophic conditions: A qPCR-based, multi-year study in twelve large rivers across the United States

Phytoplankton is the essential primary producer in fresh surface water ecosystems. However, excessive phytoplankton growth due to eutrophication significantly threatens ecologic, economic, and public health. Therefore, phytoplankton identification and quantification are essential to understanding the productivity and health of freshwater ecosystems as well as the impacts of phytoplankton overgrowth (such as Cyanobacterial blooms) on public health. Microscopy is the gold standard for phytoplankton assessment but is time-consuming, has low throughput, and requires rich experience in phytoplankton morphology. Quantitative polymerase chain reaction (qPCR) is accurate and straightforward with high throughput. In addition, qPCR does not require expertise in phytoplankton morphology. Therefore, qPCR can be a useful alternative for molecular identification and enumeration of phytoplankton. Nonetheless, a comprehensive study is missing which evaluates and compares the feasibility of using qPCR and microscopy to assess phytoplankton in fresh water. This study 1) compared the performance of qPCR and microscopy in identifying and quantifying phytoplankton and 2) evaluated qPCR as a molecular tool to assess phytoplankton and indicate eutrophication. We assessed phytoplankton using both qPCR and microscopy in twelve large freshwater rivers across the United States from early summer to late fall in 2017, 2018, and 2019. qPCR- and microscope-based phytoplankton abundance had a significant positive linear correlation (adjusted R 2 = 0.836, p -value < 0.001). Phytoplankton abundance had limited temporal variation within each sampling season and over the three years studied. The sampling sites in the midcontinent rivers had higher phytoplankton abundance than those in the eastern and western rivers. For instance, the concentration (geometric mean) of Bacillariophyta, Cyanobacteria, Chlorophyta, and Dinoflagellates at the sampling sites in the midcontinent rivers was approximately three times that at the sampling sites in the western rivers and approximately 18 times that at the sampling sites in the eastern rivers. Welch's analysis of variance indicates that phytoplankton abundance at the sampling sites in the midcontinent rivers was significantly higher than that at the sampling sites in the eastern rivers ( p -value = 0.013) but was comparable to that at the sampling sites in the western rivers ( p -value = 0.095). The higher phytoplankton abundance at the sampling sites in the midcontinent rivers was presumably because these rivers were more eutrophic. Indeed, low phytoplankton abundance occurred in oligotrophic or low trophic sites, whereas eutrophic sites had greater phytoplankton abundance. This study demonstrates that qPCR-based phytoplankton abundance can be a useful numerical indicator of the trophic conditions and water quality in freshwater rivers.

Water Research↗

USGS2017

Assessing the global distribution of river fisheries harvest: A systematic map protocol

Background Although surface freshwater comprises < 0.01% of the total water volume of earth, freshwater inland capture fisheries and aquaculture represent 40% of the global reported finfish harvest. While the social, economic, and ecological importance of inland fish and fisheries is difficult to overstate, they are often undervalued and underappreciated. Accurate information about these highly dispersed fisheries is inherently difficult to acquire, often unreported, and not collected in a standardized format globally. A standardized river fishery database is needed for managing aquatic systems as well as for defining relevant development policies. Here, we describe our methodology to search, identify, and describe available river fisheries information to create a harmonized global database of river fisheries harvest. This database will provide the first global database of spatially and temporally explicit river fisheries data. The database can be used to identify locations, hotspots of data collection, and gaps in existing knowledge and will be especially important to inform studies and management at larger spatial scales (i.e., watershed, regional, or global scales). This database will also be critical for developing fish biomass models for rivers, which can provide managers with information critical for decision-making, such as improved valuation methods for river fish and fisheries. Methods This systematic map protocol describes the methodology to search, identify, and describe available information on river fish and fisheries across the globe. We define river fisheries as “both capture and aquaculture of river finfish species for food, income, or recreation”. River fish species are those finfish that live part, or all of their lives in rivers. The searches will be conducted for the period from 1950 to present using bibliographic databases and grey literature sources. To identify relevant evidence, pre-defined inclusion and exclusion criteria will be used to screen articles at title, abstract, and full text. A searchable database containing extracted meta-data from relevant included studies will be developed and presented as a geodatabase. The final systematic map will consist of a descriptive narrative report of the distribution and content of river fish literature including a geodatabase of available information.

Environmental Evidence↗

USGS2015

Suspended sediment transport trough a large fluvial-tidal channel network

The confluence of the Sacramento and San Joaquin Rivers, CA, forms a large network of interconnected channels, referred to as the Sacramento-San Joaquin Delta (the Delta). The Delta comprises the transition zone from the fluvial influences of the upstream rivers and tidal influences of San Francisco Bay downstream. Formerly an extensive tidal marsh, the hydrodynamics and geomorphology of Delta have been substantially modified by humans to support agriculture, navigation, and water supply. These modifications, including construction of new channels, diking and draining of tidal wetlands, dredging of navigation channels, and the operation of large pumping facilities for distribution of freshwater from the Delta to other parts of the state, have had a dramatic impact on the physical and ecological processes within the Delta. To better understand the current physical processes, and their linkages to ecological processes, the USGS maintains an extensive network of flow, sediment, and water quality gages in the Delta. Flow gaging is accomplished through use of the index-velocity method, and sediment monitoring uses turbidity as a surrogate for suspended-sediment concentration. Herein, we present analyses of the transport and dispersal of suspended sediment through the complex network of channels in the Delta. The primary source of sediment to the Delta is the Sacramento River, which delivers pulses of sediment primarily during winter and spring runoff events. Upon reaching the Delta, the sediment pulses move through the fluvial-tidal transition while also encountering numerous channel junctions as the Sacramento River branches into several distributary channels. The monitoring network allows us to track these pulses through the network and document the dominant transport pathways for suspended sediment. Further, the flow gaging allows for an assessment of the relative effects of advection (the fluvial signal) and dispersion (from the tides) on the sediment pulses as they move through the system. Herein, we present analyses of the “first flush” sediment pulse that occurred on the Sacramento River in December 2012, documenting the transport pathways as well as the effects of advection and dispersion on the sediment as it moved through the fluvial-tidal transition in the Delta. The analyses identified an important transport pathway through the interior of the Delta toward the large pumping facilities in the south Delta, which has important implications for native fish (because their movements are triggered by sediment/turbidity). The results also reveal the dramatic transition from fluvial-dominated transport (advection) to tidal-dominated transport (dispersion) as the sediment pulse approaches the estuary.

California↗

USGS2023

Ecological benefits of integrative weed management of Melaleuca quinquenervia in Big Cypress National Preserve

The southern tip of North America coalesces into one of the world’s largest freshwater wetlands, the Everglades, Florida, USA. Though this region is much like an island, home to high biodiversity and endemism, it is also the site of a century of development and associated landscape-scale species invasions. Melaleuca quinquenervia (hereafter melaleuca), a tree native to tropical Australia, was planted extensively throughout south Florida as street trees, levee stabilizers, and later to reduce standing water in marshy areas. Through extensive cooperation with the United States Department of Agriculture’s Australian Biological Control Laboratory, several biological control agents were released, three of which later successfully established. Herein we examine evidence that plant community shifts determined from vegetation surveys and remotely sensed images reflect changes from melaleuca-dominated wetlands (before management) to native communities (after management). Melaleuca-dominated community types decreased from 1990 to 2020 by more than 99%. Vegetation surveys also reflect an increase in cypress wetlands, pinelands, and open water wetlands, all of which were dominated by melaleuca in previous decades. We also found the normalized difference vegetation index (NDVI) increased in melaleuca-invaded wetlands during peak infestations but decreased again after communities recovered to sawgrass-dominated wetlands. These responses are concomitant with the development of integrative management techniques for melaleuca that include mechanical, chemical, and biological control. Our results confirm previous findings that biological control likely augments conventional management methods by limiting recovery of invasive species.

Florida↗

USGS2011

How restructuring river connectivity changes freshwater fish biodiversity and biogeography

Interbasin water transfer projects, in which river connectivity is restructured via man-made canals, are an increasingly popular solution to address the spatial mismatch between supply and demand of fresh water. However, the ecological consequences of such restructuring remain largely unexplored, and there are no general theoretical guidelines from which to derive these expectations. River systems provide excellent opportunities to explore how network connectivity shapes habitat occupancy, community dynamics, and biogeographic patterns. We apply a neutral model (which assumes competitive equivalence among species within a stochastic framework) to an empirically derived river network to explore how proposed changes in network connectivity may impact patterns of freshwater fish biodiversity. Without predicting the responses of individual extant species, we find the addition of canals connecting hydrologically isolated river basins facilitates the spread of common species and increases average local species richness without changing the total species richness of the system. These impacts are sensitive to the parameters controlling the spatial scale of fish dispersal, with increased dispersal affording more opportunities for biotic restructuring at the community and landscape scales. Connections between isolated basins have a much larger effect on local species richness than those connecting reaches within a river basin, even when those within-basin reaches are far apart. As a result, interbasin canal projects have the potential for long-term impacts to continental-scale riverine communities.

Water Resources Research↗

USGS2024

Temporal variability in irrigated land and climate influences on salinity loading across the Upper Colorado River Basin, 1986-2017

Freshwater salinization is a growing global concern impacting human and ecosystem needs with impacts to water availability for human and ecological uses. In the Upper Colorado River Basin (UCRB), dissolved solids in streams compound ongoing water supply challenges to further limit water availability and cause economic damages. Much effort has been dedicated to understanding dissolved solid sources, transport, and management in the region, yet temporal variability in loading from key sources such as irrigated lands and the influence of climate on dissolved solids loading remains unknown. Quantifying the contributions and temporal variability of dissolved solids loads from irrigated lands may benefit salinity management efforts. This study applies a time-varying (dynamic) modeling approach to predict annual dissolved solids loads across the UCRB from 1986 through 2017. Between 66% and 82% of the total accumulated dissolved solids load in the basin is from groundwater (storage and baseflow). Our findings link climate, irrigation, and groundwater, and confirm large storage contributions that have declined slightly with time. Dissolved solids loads increase during wet periods and decrease during dry periods, although the relative contributions of different sources vary little with time. Irrigation enhances loading efficiency relative to unirrigated areas through runoff and groundwater, and can locally be a major source of dissolved solids where irrigation occurs. Results indicate that loads from irrigated areas increase when irrigated area and/or water available for runoff increase. Increased regional aridification over the study period may have contributed to decreasing stream salinity through both quicker surface runoff and lagged groundwater storage processes. Study results may be relevant to salinity management in arid environments where water availability is limited and where irrigation influences salinity loading to streams.

Upper Colorado River Basin↗

USGS2011

Verification of a ‘freshwater-type’ life history variant of juvenile American shad in the Columbia River

American shad are native to the Atlantic coast of North America and were successfully introduced to the Pacific coast in the 1870s. They are now more abundant in the Columbia River than are its native salmon. As in their native range, Columbia River American shad are anadromous and have been assumed to solely exhibit an ‘ocean-type’ life history, characterized by a short period of juvenile rearing in freshwater, followed by seaward migration and saltwater entry before age-1, with sexually mature individuals returning to freshwater to spawn beginning at age-3. During October 2007, emigrating juvenile American shad were captured in the juvenile fish monitoring facility at Bonneville Dam (river kilometer 235) on the Columbia River. Their length frequencies revealed the presence of two modes; the lower mode averaged 77 mm fork length (FL) and the upper mode averaged 184 mm FL. A subsample of fish from each mode was aged using otoliths. Otoliths from the lower mode (n=10) had no annuli, indicating that they were all age-0, while otoliths from the upper mode (n=25) had one or two annuli, indicating that they were either age-1 or age-2, respectively. Spawning adults collected in June 2007 averaged 393 mm FL (range 305-460 mm; n=21) and were estimated to range in age from 3-6. Elemental analyses of juvenile and adult otoliths provide evidence for deviations from the typical migration pattern expected for this species, including extensive freshwater rearing of up to two years. This evidence shows that a ‘freshwater-type’ of juvenile American shad exists as year-round or transient residents in the Columbia River basin. The ecological role of this life history variant within the fish community is unknown.

Idaho, Oregon, Washington↗

USGS2016

Simulated effects of groundwater withdrawals from aquifers in Ocean County and vicinity, New Jersey

Rapid population growth since the 1930s in Ocean County and vicinity, New Jersey, has placed increasing demands upon the area’s freshwater resources. To examine effects of groundwater withdrawals, a three-dimensional groundwater-flow model was developed to simulate the groundwater-flow systems of five area aquifers: the unconfined Kirkwood-Cohansey aquifer system and Vincentown aquifer, and three confined aquifers— the Rio Grande water-bearing zone, the Atlantic City 800-foot sand, and the Piney Point aquifer. The influence of withdrawals is evaluated by using transient groundwater-flow model simulations that incorporate three withdrawal schemes. These are (1) no-withdrawal conditions; (2) 2000–03 withdrawal conditions, using reported monthly withdrawals at all production wells from January 2000 through December 2003; and (3) maximum-allocation withdrawal conditions using the maximum withdrawal allowed by New Jersey Department of Environmental Protection permits at each well. Particle tracking analysis, using results from model simulations, delineated particle flow paths from production wells to the point of recharge, and estimated particle travel times. Compared with no-withdrawal conditions, 2000–03 withdrawal conditions reduced the amount of groundwater flow out of the Kirkwood-Cohansey aquifer system into streams, increased the net flow of water into other layers, reduced net flow into or out of storage, and reduced flow from the Kirkwood-Cohansey aquifer system to constant head cells. Freshwater discharging to the Barnegat Bay-Little Egg Harbor estuary from streams and groundwater is essential to maintaining the ecology of the bay. Examination of selected stress periods indicates that simulated base flow in streams flowing into the Barnegat Bay-Little Egg Harbor estuary is reduced by as much as 49 cubic feet per second for 2000 to 2003 withdrawal conditions when compared with no-withdrawal conditions. In the three confined aquifers, water levels during periods of low recharge and high withdrawals, and high recharge and low withdrawals, were examined to determine seasonal effects on the confined flow systems. The simulated potentiometric surface of the Rio Grande water-bearing zone and the Atlantic City 800-foot sand during selected stress periods indicates substantial declines from no-withdrawal conditions to 2000–03 conditions as a result of groundwater withdrawals. Cones of depression in Toms River Township, Seaside Heights and Seaside Park Boroughs, and Barnegat Light Borough developed in the potentiometric surface of the Piney Point aquifer in response to withdrawals. Maximum-allocation withdrawals decreased flow out of the Kirkwood-Cohansey aquifer system to constant head cells, increased flow out of the aquifer system to adjacent and lower layers, and reduced groundwater discharge to streams when compared with 2000–03 withdrawal conditions. Increases in withdrawals from the Rio Grande water-bearing zone, the Atlantic City 800-foot sand, and the Piney Point aquifer result in an increase in simulated net groundwater flow into these aquifers. Base-flow reduction from 2000–03 conditions to maximum-allocation conditions of 25 to 29 cubic feet per second in all streams draining to the Barnegat Bay-Little Egg Harbor also is indicated. Potentiometric surfaces of the Rio Grande water-bearing zone, Atlantic City 800-foot sand, and the Piney Point aquifer during two stress periods of simulated maximum-allocation withdrawal conditions indicated the expansion of several cones of depression developed during 2000–03 withdrawals. Simulation of average 2000–03 withdrawal conditions indicated the extent to which the groundwater-flow system is susceptible to potential saltwater intrusion into near-shore wells. Travel time from recharge to discharge location ranged from 11 to approximately 50,700 years in near-shore Kirkwood-Cohansey aquifer system wells. Those in Seaside Heights Borough, in Island Beach State Park (Berkeley Township), and in Ship Bottom Borough have particle travel times from 140 to 12,000 years and flow paths that originated under Barnegat Bay or the Atlantic Ocean from the simulation of average maximum-allocation withdrawal conditions. Travel time along flow paths to wells screened in the Rio Grande water-bearing zone and the Atlantic City 800-foot sand from recharge to discharge point ranged from nearly 530 years to greater than 3.73 million years from the simulation of average 2000–03 withdrawal conditions. Particle tracking indicated that most wells screened in these aquifers derived a large part of their recharge from the Oswego River Basin, with a small portion of flow originating either beneath Barnegat Bay or to the east beneath the Atlantic Ocean. Travel time along flow paths that start beneath either Barnegat Bay or the Atlantic Ocean ranged from 2,300 to approximately 134,000 years from the simulation of average maximum-allocation withdrawal conditions."

New Jersey↗

USGS2018

Water

Ensuring a reliable supply of clean freshwater to individuals, communities, and ecosystems , together with effective management of floods and droughts, is the foundation of human and ecological health. The water sector is also central to the economy and contributes significantly to the resilience of many other sectors, including agriculture, energy, urban environments, and industry. Water systems face considerable risk , even without anticipated future climate changes. Limited surface water storage, as well as a limited ability to make use of long-term drought forecasts and to trade water across uses and basins, has led to a significant depletion of aquifers in many regions in the United States. Across the Nation, much of the critical water and wastewater infrastructure is nearing the end of its useful life. To date, no comprehensive assessment exists of the climate-related vulnerability of U.S. water infrastructure (including dams, levees, aqueducts, sewers, and water and wastewater distribution and treatment systems), the potential resulting damages, or the cost of reconstruction and recovery. Paleoclimate information (reconstructions of past climate derived from ice cores or tree rings) shows that over the last 500 years, North America has experienced pronounced wet/dry regime shifts that sometimes persisted for decades. Because such protracted exposures to extreme floods or droughts in different parts of the country are extraordinary compared to events experienced in the 20th century, they are not yet incorporated in water management principles and practice. Anticipated future climate change will exacerbate this risk in many regions. A central challenge to water planning and management is learning to plan for plausible future climate conditions that are wider in range than those experienced in the 20th century. Doing so requires approaches that evaluate plans over many possible futures instead of just one, incorporate real-time monitoring and forecast products to better manage extremes when they occur, and update policies and engineering principles with the best available geoscience-based understanding of planetary change. While this represents a break from historical practice, recent examples of adaptation responses undertaken by large water management agencies, including major metropolitan water utilities and the U.S. Army Corps of Engineers, are promising.

Report↗

USGS1999

Time series of suspended-solids concentration in Honker Bay during water year 1997

Suspended-solids concentration (SSC) responds differently to seasonal variations, such as Delta outflow and wind in shallow water areas than in deep-water channels. Although San Francisco Bay includes extensive areas of shallow water, with about one-half of the surface area of the Bay being less than 2 meters deep (Conomos and Peterson, 1977), deep-water channels along the spine of San Francisco Bay, not shallow waters, are generally sampled by the Regional Monitoring Program (RMP; SFEI, 1997) and the U.S. Geological Survey (USGS; Buchanan and Schoellhamer, 1996; Edmunds et al., 1997; Freeman et al., 1997). The purpose of this article is to provide an example of how SSC varies in shallow water. Time series of SSC were measured at several sites in Honker Bay. Measurements were made from December 1996 to March 1997 to observe the first wintertime freshwater flood pulse pushing salinity out of Honker Bay and delivering the first flush of sediment from the Central Valley watershed to the Bay. Instruments also were deployed from April to August 1997 to measure the return of salinity to Honker Bay as freshwater flow diminished, and to measure resuspension of sediment by wind-waves. Honker Bay was chosen because of its ecological significance to many estuarine plants and animals that depend on shallow waters for shelter and nourishment (Atwater et al., 1979; Cloern et al., 1983). Total concentrations of seven trace elements measured by the RMP are well correlated with SSC (Schoellhamer, 1997a, 1997b). Thus, the spatial and temporal variability of some trace elements of concern to the RMP is analogous to the SSC variability discussed in this article.

California↗

USGS2025

Potential interactions between birds and floating photovoltaic solar energy: Spatially informed species vulnerabilities, techno-ecological risks, and sustainability trade-offs

Floating photovoltaics (floating solar panels; FPV) can reduce the negative impacts of solar energy development in terrestrial environments, but their effects on freshwater ecosystems remain poorly understood. We examined potential FPV interactions with avian biodiversity, using previously modeled technical potential of FPV in the northeastern United States. We developed a vulnerability index based on avian species’: (i) morphological traits, (ii) level of conservation concern, and (iii) habitat requirements. Using eBird participatory science data, we assessed the risk of FPV to 291 species of birds occurring at FPV-suitable waterbodies based on their vulnerability index and estimated relative abundance at each location. The greatest risk of FPVs to birds was associated with waterbodies near the Atlantic coast and Great Lakes, and most (80%) of these high-risk waterbodies were smaller waterbodies. Because the avian risk at FPV-suitable waterbodies was not correlated with estimated energy generation, reducing risk to birds might not require energy trade-offs. Moreover, avoiding FPV installations at waterbodies predicted to pose high risk to birds is likely to return social and recreational benefits while minimizing risk of biofouling. Our analysis provides a framework for proactively evaluating risk, reducing potential adverse impacts of FPV to birds, and identifying cobenefits of sustainable FPV siting across waterscapes.

Connecticut, Delaware, Maine, Maryland, Massachuse↗

USGS2019

Phylogeny and foraging mode correspond with thiaminase activity in freshwater fishes: Potential links to environmental factors

Knowledge of the dietary components of fish species is important for understanding their growth, survival, and recruitment. Deficiency in thiamine (vitamin B1) leading to reproductive failure and physiological illness among freshwater fishes has been attributed to thiaminase activity in fish in the Great Lakes and the New York Finger Lakes, but the causes of variation in thiaminase activity among freshwater fishes is unclear. We characterized thiaminase activity in 29 species of freshwater fishes across 7 ray-finned and 1 jawless family. All fish were further categorized by phylogeny, trophic category (trophic level and feeding mode), and native or non-native status to evaluate how ecological processes correspond with thiaminase activity. Thiaminase activity varied significantly across species, families, trophic factors, phylogenetic groups, and sites. Teleosts that were more recently derived had higher thiaminase activity than more basal species. Thiaminase activity was also higher among herbivores than omnivores or carnivores. This trend was clearest in the Cyprinidae family, which had the greatest range in thiaminase activity and a wide range in trophic-level position and trophic categories (herbivores, omnivores, and carnivores). Variation in average thiaminase activity of Spotfin Shiners (Cyprinella spiloptera) among sites within a watershed was correlated with anthropogenic and natural components of land cover. Our study contributes much-needed quantitative ecological information related to thiaminase activity in a suite of fish species that vary in evolutionary history, trophic level, and foraging modes. However, more studies are needed to identify interacting causes of thiaminase variation and examine the implications of these findings on the overall health of aquatic populations and freshwater ecosystems.

Freshwater Science↗

USGS2026

Small creatures, big challenge: A review of current knowledge and assessment of research needs to inform water withdrawal management for the Duck River's freshwater mussel fauna

The Duck River is a remarkable national resource, boasting outstanding biodiversity (Ahlstedt et al. 2017). It contains 151 fish species, over 60 mussel species, and 22 snail species, many of which are federally listed (Etnier and Starnes 1993; Johnson et al. 2013; Ahlstedt et al. 2017; Womble and Rosenberger 2025a). The Duck River watershed is at a pivotal time in its management and ecological history due to significant growth in human population and economic activity. The consequent increase in surface water demand presents challenges for sustainable water resource management. The Tennessee Department of Environment and Conservation (TDEC) has permitted or proposed to permit eight water utilities to withdraw over 77 million gallons per day (mgd) from the Duck River, representing > 40% increase from previously permitted amounts (USFWS 2025). On November 20, 2024, Tennessee Governor Bill Lee signed Executive Order No 108 to ensure long-term stability of the Duck River watershed through balancing economic growth, water resource management, and environmental conservation. Some primary components of this plan are the creation of a Comprehensive Regional Drought Management Plan, the development of a Habitat Conservation Plan, and the establishment of the Duck River Watershed Planning Partnership (DRWPP). Although the planning partnership is not focused on a sole aspect of the Duck River, but the watershed as a whole, the mussel assemblages of the Duck River have been a particular focus due to their importance in providing ecosystem services, sensitivity to water quality, conservation status, and sensitivity to periodic drought conditions in this system. With multiple state and federal agencies involved in managing the Duck River’s unique water resources, a focused review on how future water management could affect the freshwater mussel communities in the Duck River will contribute to this process. Our objectives of this review are to: 1. Review the effects of changing flow regimes on mussels, with emphasis on the effect of droughts/low flows, highlighting key processes/factors affecting mussels. 2. Highlight critical data gaps that could allow future, evidence-based water management decisions in this system. 3. Propose research topics to address critical data gaps and enable evidence-based water management decisions that consider the needs of freshwater mussels. Freshwater mussels are a critical component of riverine ecosystems, providing ecosystem services including water filtration, nutrient cycling, and habitat provision (Vaughn et al. 2004; Haag 2012) that benefit human communities. Environmental flows, also referred to as ecological or e-flows, refer to the quantity, timing, and quality of water flows necessary to maintain the ecological health of rivers, wetlands, and other aquatic ecosystems (Acreman and Dunbar 2004; Acreman 2016). For freshwater mussels, environmental flows include maintaining a flow regime and associated water quality regimes that are favorable for both juveniles and adults while also seasonally supporting host fish and the survival of settling glochidia (i.e., larval mussels) in suitable environments (Gates et al. 2015). Freshwater mussels are adapted to the natural flow regime of their native streams, including seasonal variability in flows. As sedentary filter feeders, mussels require adequate water flow to provide oxygen and food (Allen and Vaughn 2009); however, they also require periods of low flow to increase access to fish hosts and to ensure juveniles are not displaced (Gates et al 2015). Mussels are sensitive to water quality conditions, including pollutants, sedimentation, and artificial alterations of temperature and pH (Strayer and Malcom 2012). Mussel community characteristics, including presence, abundance, and species richness, generally increase with stream size (e.g., stream order); however, responses to changes in flow conditions are often species-specific, and the magnitude and timing of extreme flow conditions have more predictive power for mussel community response than general changes in flow (Lopez and Vaughn 2021). Complex hydraulic variables, such as relative shear stress and Reynolds number, can be strong predictors of mussel community responses because they combine simple hydraulic variables (e.g., velocity, depth) with stream channel characteristics, such as substrate composition and dynamics. Droughts directly and indirectly affect mussels by influencing their physiology, behavior, reproduction, and ecosystem roles. Mass mussel die-offs during droughts and low water conditions are widely documented (Vaughn et al. 2015; Sousa et al. 2018; Dubose et al. 2019). Droughts can also lead to a shift in mussel community composition, with drought-tolerant species becoming more dominant while more sensitive species experience declines (Galbraith et al, 2010; Lopez et al. 2022; Vaughn and Atkinson 2025). Droughts affect mussels through direct mortality from stranding as well as physiological stress from altered water temperature and quality, reduced habitat and food availability and quality, increased predation and competition, disruption of reproductive cycles, and increased susceptibility to disease and pathogens. Although the effects of droughts, water withdrawals, and low flow conditions on mussels are an increasing area of study, there is a general paucity of data-driven consensus regarding optimal mitigation approaches and strategies (Cushway et al. 2024). Long-term management decisions regarding water withdrawals, particularly during extended or multi-year drought conditions, may consider factors beyond direct mortality such as the sublethal effects of drought and low flow conditions on freshwater mussels for a comprehensive understanding of the effects of prolonged low flows on freshwater mussels and aquatic communities.

Tennessee↗

USGS2009

Otters, Marine

The otters (Mustelidae; Lutrinae) provide an exceptional perspective into the evolution of marine living by mammals. Most extant marine mammals (e.g. the cetaceans, pinnipeds, and sirenians) have been so highly modified by long periods of selection for life in the sea that they bear little resemblance to their terrestrial ancestors. Marine otters, in contrast, are more recent expatriates from freshwater habitats and some species still live in both environments. Contrasts among species within the otters, and among the otters, terrestrial mammals, and the more highly adapted pinnipeds and cetaceans provide powerful insights into mammalian adaptations to life in the sea (Estes, 1989). Among the marine mammals, sea otters ( Enhydra lutris , Fig. 1) provide the clearest understanding of consumer-induced effects on ecosystem function. This is due in part to opportunities provided by history and in part to the relative ease with which shallow coastal systems where sea otters live can be observed and studied. Although more difficult to study than sea otters, other otter species reveal the connectivity among the marine, freshwater, and terrestrial systems. These three qualities of the otters – their comparative biology, their role as predators, and their role as agents of ecosystem connectivity – are what make them interesting to marine mammalogy. The following account provides a broad overview of the comparative biology and ecology of the otters, with particular emphasis on those species or populations that live in the sea. Sea otters are features prominently, in part because they live exclusively in the sea whereas other otters have obligate associations with freshwater and terrestrial environments (Kenyon, 1969; Riedman and Estes, 1990).

Book chapter↗

USGS2018

Disentangling the effects of low pH and metal mixture toxicity on macroinvertebrate diversity

One of the primary goals of biological assessment of streams is to identify which of a suite of chemical stressors is limiting their ecological potential. Elevated metal concentrations in streams are often associated with low pH, yet the effects of these two potentially limiting factors of freshwater biodiversity are rarely considered to interact beyond the effects of pH on metal speciation. Using a dataset from two continents, a biogeochemical model of the toxicity of metal mixtures (Al, Cd, Cu, Pb, Zn) and quantile regression, we addressed the relative importance of both pH and metals as limiting factors for macroinvertebrate communities. Current environmental quality standards for metals proved to be protective of stream macroinvertebrate communities and were used as a starting point to assess metal mixture toxicity. A model of metal mixture toxicity accounting for metal interactions was a better predictor of macroinvertebrate responses than a model considering individual metal toxicity. We showed that the direct limiting effect of pH on richness was of the same magnitude as that of chronic metal toxicity, independent of its influence on the availability and toxicity of metals. By accounting for the direct effect of pH on macroinvertebrate communities, we were able to determine that acidic streams supported less diverse communities than neutral streams even when metals were below no-effect thresholds. Through a multivariate quantile model, we untangled the limiting effect of both pH and metals and predicted the maximum diversity that could be expected at other sites as a function of these variables. This model can be used to identify which of the two stressors is more limiting to the ecological potential of running waters.

Environmental Pollution↗

USGS2022

Environmental DNA methods for ecological monitoring and biodiversity assessment in estuaries

Environmental DNA (eDNA) detection methods can complement traditional biomonitoring to yield new ecological insights in aquatic systems. However, the conceptual and methodological frameworks for aquatic eDNA detection and interpretation were developed primarily in freshwater environments and have not been well established for estuaries and marine environments that are by nature dynamic, turbid, and hydrologically complex. Environmental context and species life history are critical for successful application of eDNA methods, and the challenges associated with eDNA detection in estuaries were the subject of a symposium held at the University of California Davis on January 29, 2020 ( https://marinescience.ucdavis.edu/engagement/past-events/edna ). Here, we elaborate upon topics addressed in the symposium to evaluate eDNA methods in the context of monitoring and biodiversity studies in estuaries. We first provide a concise overview of eDNA science and methods, and then examine the San Francisco Estuary (SFE) as a case study to illustrate how eDNA detection can complement traditional monitoring programs and provide regional guidance on future potential eDNA applications. Additionally, we offer recommendations for enhancing communication between eDNA scientists and natural resource managers, which is essential for integrating eDNA methods into existing monitoring programs. Our intent is to create a resource that is accessible to those outside the field of eDNA, especially managers, without oversimplifying the challenges or advantages of these methods.

Estuaries and Coasts↗

USGS2025

Movement patterns of invasive red swamp crayfish vary with sex and environmental factors

Invasive species disproportionately invade freshwater ecosystems, threatening biodiversity. Defining when, where, and why aquatic invasive species move can help inform management strategies, yet the movement ecology of some of the most pervasive invasive species remains unknown. Red swamp crayfish ( Procambarus clarkii ; RSC) are the most widespread invasive crayfish and negatively affect ecosystems worldwide. We employed high-dimensional acoustic telemetry to investigate the movement patterns of 24 individual RSC across three months in an invaded water body. We assessed the effects of various extrinsic factors, such as time of day, temperature, precipitation, and proximity to the water’s edge, along with intrinsic factors, such as sex, reproductive form, and size, at different scales, including movement steps, range distribution, and behavioral states. We found that movement patterns across all scales were overwhelmingly driven by sex and reproductive form. Furthermore, RSC showed increased overall activity at night and near the water’s edge. By establishing baseline movement patterns and identifying key contributing factors, these findings provide a foundation for the development of adaptive management strategies for controlling invasive RSC populations.

Michigan↗