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At least 487 records · Page 27Linked to original sources

USGS2011

U.S. Department of Energy's regional carbon sequestration partnership initiative: Update on validation and development phases

The U.S. Department of Energy (DOE) is the lead federal agency for the development and deployment of carbon sequestration technologies. The Regional Carbon Sequestration Partnerships (RCSPs) are the mechanism DOE utilizes to prove the technology and to develop human capital, stakeholder networks, information for regulatory policy, best practices documents and training to work toward the commercialization of carbon capture and storage (CCS). The RCSPs are tasked with determining the most suitable technologies, regulations, and infrastructure for carbon capture, transport, and storage in their respective geographic areas of responsibility. The seven partnerships include more than 400 state agencies, universities, national laboratories, private companies, and environmental organizations, spanning 43 states and four Canadian provinces. The Regional Partnerships Initiative is being implemented in three phases: Characterization, Validation, and Development. The initial Characterization Phase began in 2003 and was completed in 2005 and focused on characterization of CO2 storage potential within each region. It was followed by the Validation Phase, which began in 2005 and is nearing completion in 2011. The focus of the Validation Phase has been on small-scale field tests throughout the seven partnerships in various formation types such as saline, oil-bearing, and coal seams. The Validation Phase has characterized suitable CO2 storage reservoirs and identified the need for comprehensive legal and regulatory frameworks to enable commercial-scale CCS deployment. Finally, the Development Phase will consist of a series of large-scale, one-million-ton, injection tests throughout the United States and Canada. The objective of these large-scale tests is to identify the regulatory path or challenges in permitting CCS projects, to demonstrate the technology can inject CO2 safely, and to verify its permanence in geologic formations in preparation for the commercialization of geologic sequestration. ?? 2010 Elsevier Ltd. All rights reserved. ?? 2011 Published by Elsevier Ltd.

Conference Paper↗

USGS2018

Prediction uncertainty and data worth assessment for groundwater transport times in an agricultural catchment

Uncertainties about the age of base-flow discharge can have serious implications for the management of degraded environmental systems where subsurface pathways, and the ongoing release of pollutants that accumulated in the subsurface during past decades, dominate the water quality signal. Numerical groundwater models may be used to estimate groundwater return times and base-flow ages and thus predict the time required for stakeholders to see the results of improved agricultural management practices. However, the uncertainty inherent in the relationship between (i) the observations of atmospherically-derived tracers that are required to calibrate such models and (ii) the predictions of system age that the observations inform have not been investigated. For example, few if any studies have assessed the uncertainty of numerically-simulated system ages or evaluated the uncertainty reductions that may result from the expense of collecting additional subsurface tracer data. In this study we combine numerical flow and transport modeling of atmospherically-derived tracers with prediction uncertainty methods to accomplish four objectives. First, we show the relative importance of head, discharge, and tracer information for characterizing response times in a uniquely data rich catchment that includes 266 age-tracer measurements (SF 6 , CFCs, and 3 H) in addition to long term monitoring of water levels and stream discharge. Second, we calculate uncertainty intervals for model-simulated base-flow ages using both linear and non-linear methods, and find that the prediction sensitivity vector used by linear first-order second-moment methods results in much larger uncertainties than non-linear Monte Carlo methods operating on the same parameter uncertainty. Third, by combining prediction uncertainty analysis with multiple models of the system, we show that data-worth calculations and monitoring network design are sensitive to variations in the amount of water leaving the system via stream discharge and irrigation withdrawals. Finally, we demonstrate a novel model-averaged computation of potential data worth that can account for these uncertainties in model structure.

Maryland↗

USGS2017

Challenges with secondary use of multi-source water-quality data in the United States

Combining water-quality data from multiple sources can help counterbalance diminishing resources for stream monitoring in the United States and lead to important regional and national insights that would not otherwise be possible. Individual monitoring organizations understand their own data very well, but issues can arise when their data are combined with data from other organizations that have used different methods for reporting the same common metadata elements. Such use of multi-source data is termed “secondary use”—the use of data beyond the original intent determined by the organization that collected the data. In this study, we surveyed more than 25 million nutrient records collected by 488 organizations in the United States since 1899 to identify major inconsistencies in metadata elements that limit the secondary use of multi-source data. Nearly 14.5 million of these records had missing or ambiguous information for one or more key metadata elements, including (in decreasing order of records affected) sample fraction, chemical form, parameter name, units of measurement, precise numerical value, and remark codes. As a result, metadata harmonization to make secondary use of these multi-source data will be time consuming, expensive, and inexact. Different data users may make different assumptions about the same ambiguous data, potentially resulting in different conclusions about important environmental issues. The value of these ambiguous data is estimated at \$US12 billion, a substantial collective investment by water-resource organizations in the United States. By comparison, the value of unambiguous data is estimated at \$US8.2 billion. The ambiguous data could be preserved for uses beyond the original intent by developing and implementing standardized metadata practices for future and legacy water-quality data throughout the United States.

Water Research↗

USGS2017

Incorporating evolutionary insights to improve ecotoxicology for freshwater species

Ecotoxicological studies have provided extensive insights into the lethal and sublethal effects of environmental contaminants. These insights are critical for environmental regulatory frameworks, which rely on knowledge of toxicity for developing policies to manage contaminants. While varied approaches have been applied to ecotoxicological questions, perspectives related to the evolutionary history of focal species or populations have received little consideration. Here, we evaluate chloride toxicity from the perspectives of both macroevolution and contemporary evolution. First, by mapping chloride toxicity values derived from the literature onto a phylogeny of macroinvertebrates, fish, and amphibians, we tested whether macroevolutionary relationships across species and taxa are predictive of chloride tolerance. Next, we conducted chloride exposure tests for two amphibian species to assess whether potential contemporary evolutionary change associated with environmental chloride contamination influences chloride tolerance across local populations. We show that explicitly evaluating both macroevolution and contemporary evolution can provide important and even qualitatively different insights from those obtained via traditional ecotoxicological studies. While macroevolutionary perspectives can help forecast toxicological end points for species with untested sensitivities, contemporary evolutionary perspectives demonstrate the need to consider the environmental context of exposed populations when measuring toxicity. Accounting for divergence among populations of interest can provide more accurate and relevant information related to the sensitivity of populations that may be evolving in response to selection from contaminant exposure. Our data show that approaches accounting for and specifically examining variation among natural populations should become standard practice in ecotoxicology.

Evolutionary Applications↗

USGS2016

Cyanobacterial harmful algal blooms and U.S. Geological Survey science capabilities

Cyanobacterial harmful algal blooms (CyanoHABs) are increasingly a global concern because CyanoHABs pose a threat to human and aquatic ecosystem health and cause economic damages. Despite advances in scientific understanding of cyanobacteria and associated compounds, many unanswered questions remain about occurrence, environmental triggers for toxicity, and the ability to predict the timing, duration, and toxicity of CyanoHABs. U.S. Geological Survey (USGS) scientists are leading a diverse range of studies to address CyanoHAB issues in water bodies throughout the United States, using a combination of traditional methods and emerging technologies, and in collaboration with numerous partners. By providing practical applications of cutting edge CyanoHAB research, USGS studies have advanced scientific understanding, enabling the development of approaches to help protect ecological and human health.

Open-File Report↗

USGS1987

Iowa ground-water quality

The population served by ground-water supplies in Iowa (fig. L4) is estimated to be about 2,392,000, or 82 percent of the total population (U.S. Geological Survey, 1985, p. 211). The population of Iowa is distributed fairly uniformly throughout the State (fig. IB), with 59 percent residing in rural areas or towns of less than 10,000 (U.S. Bureau of the Census, 1982). Surficial aquifers, the Jordan aquifer, and aquifers that form the uppermost bedrock aquifer in a particular area are most commonly used for drinking-water supplies and usually provide ample amounts of good quality water. However, naturally occurring properties or substances such as hardness, dissolved solids, and radioactivity limit the use of water for drinking purposes in some areas of each of the five principal aquifers (fig. 2/4). Median concentrations of nitrate in all aquifers and radium-226 in all aquifers except the Jordan are within the primary drinking-water standards established by the U.S. Environmental Protection Agency (1986a). Median concentrations for dissolved solids in the surficial, Dakota, and Jordan aquifers exceed secondary drinking-water standards established by the U.S. Environmental Protection Agency (1986b). Ground water in Iowa, however, has been affected by human induced contamination. Water from some wells in surficial and the uppermost bedrock aquifers contains nitrate concentrations exceeding the primary drinking-water standard of 10 mg/L (milligrams per liter) as nitrogen. Surficial aquifers also contain detectable concentrations of pesticides and other organic substances. Standards have not been established for many of the organic substances detected, and water supplies containing these substances may continue to be used. The long-term health consequences of exposure to these substances are not known; however, the estimated number of people in Iowa exposed to pesticide contaminants is believed to exceed 750,000 or 25 percent of the population (Kelley and others, 1986.) Land-use and waste-disposal practices are believed to be responsible for most human-induced contamination in Iowa. About 33 million acres, or nearly 93 percent of the land area of Iowa, is fanned (Skow and Halley, 1986). About 56 million pounds of herbicides was used for agriculture during 1979 (Becker and Stockdale, 1980) and about 2.7 million tons of fertilizer products was used during 1985 (Skow and Halley, 1986). Additionally, 30 hazardous-waste sites are under authority of the Federal Resource Conservation and Recovery Act (RCRA) of 1976; six other sites have been listed in the National Priorities List (NPL) under the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) of 1980 (U.S. Environmental Protection Agency, 1986c). As of September 1985, two Federal sites at one facility under the U.S. Department of Defense Installation Restoration Program (IRP) were designated for remedial response in accordance with CERCLA. In addition to the above sites, Iowa has 90 active municipal landfills (fig. 3C). The U.S. Geological Survey, in cooperation with the University of Iowa Hygienic Laboratory, the Iowa Department of Natural Resources, and several counties in Iowa, currently (1986) is monitoring about 1,500 public and private wells for inorganic and organic constituents. The principal objective of this program, begun in 1982, is to collect water-quality data that will describe the long-term chemical quality of the surficial and major bedrock aquifer systems in Iowa (Detroy, 1985).

Iowa↗

USGS2012

Salinity adaptation of the invasive New Zealand mud snail ( Potamopyrgus antipodarum ) in the Columbia River estuary (Pacific Northwest, USA): Physiological and molecular studies

In this study, we examine salinity stress tolerances of two populations of the invasive species New Zealand mud snail Potamopyrgus antipodarum , one population from a high salinity environment in the Columbia River estuary and the other from a fresh water lake. In 1996, New Zealand mud snails were discovered in the tidal reaches of the Columbia River estuary that is routinely exposed to salinity at near full seawater concentrations. In contrast, in their native habitat and throughout its spread in the western US, New Zealand mud snails are found only in fresh water ecosystems. Our aim was to determine whether the Columbia River snails have become salt water adapted. Using a modification of the standard amphipod sediment toxicity test, salinity tolerance was tested using a range of concentrations up to undiluted seawater, and the snails were sampled for mortality at daily time points. Our results show that the Columbia River snails were more tolerant of acute salinity stress with the LC 50 values averaging 38 and 22 Practical Salinity Units for the Columbia River and freshwater snails, respectively. DNA sequence analysis and morphological comparisons of individuals representing each population indicate that they were all P. antipodarum . These results suggest that this species is salt water adaptable and in addition, this investigation helps elucidate the potential of this aquatic invasive organism to adapt to adverse environmental conditions.

Oregon, Washington↗

USGS2016

Structure and spatial patterns of macrobenthic community in Tai Lake, a large shallow lake, China

Tai Lake (Chinese: Taihu ), the third-largest freshwater lake in China, suffers from harmful cyanobacteria blooms that are caused by economic development and population growth near the lake. Several studies have focused on phytoplankton in Tai Lake after a drinking water crisis in 2007; however, these studies primarily focused on microcystin bioaccumulation and toxicity to individual species without examining the effects of microcystin on macrobenthic community diversity. In this study, we conducted a survey of the lake to examine the effects of microcystine and other pollutants on marcobenthic community diversity. A totally of forty-nine species of macroinvertebrates were found in Tai Lake. Limnodrilus hoffmeisteri and Corbicula fluminea were the most abundant species. Cluster-analysis and one-way analysis of similarity (ANOSIM) identified three significantly different macrobenthic communities among the sample sites. More specifically, sites in the eastern bays, where aquatic macrophytes were abundant, had the highest diversity of macrobenthic communities, which were dominated by Bellamya aeruginosa , Bellamya purificata , L. hoffmeisteri , and Alocinma longicornis . Sites in Zhushan Bay contained relatively diverse communities, mainly composed of L. hoffmeisteri , C. fluminea , L. claparederanus , R. sinicus , and Cythura sp. Sites in the western region, Meiliang Bay and Wuli Bay had the lowest diversity, mainly composed of L. hoffmeisteri , C. fluminea , Branchiura sowerbyi , and Rhyacodrilus sinicus . In addition, the relationships between macrobenthic metrics (Shannon–Wiener, Margalef, and Pielou) and environmental variables showed that community structure and spatial patterns of macrobenthos in Tai Lake were significantly influenced by chemical oxygen demand (COD Cr ), biochemical oxygen demand (BOD 5 ), lead (Pb), and microcystin-LR (L for leucine and R for arginine). Our findings provide critical information that could help managers and policymakers assess and modify ecological restoration practices.

Tai Lake↗

USGS1982

Freshwater aspects of anadromous salmonid enhancement

Freshwater enhancement of anadromous salmonid populations has been practiced in the United States and Canada since the late 1800's. Reduction of natural spawning habitat and increasing fishing pressure make artificial enhancement a possible alternative to declining populations. Enhancement of anadromous salmonids involved improvement of the natural environment and reducing natural mortality. Methods of enhancement include fishways, spawning and rearing channels, stream rehabilitation, lake fertilization, environmental management, and artificial propagation techniques. Five Pacific salmon species and steelhead trout are commonly enhanced, primarily in watershed entering the Pacific Ocean and Great Lakes. Enhancement efforts contribute heavily to a commercial and sport industry realizing over $1.5 billion.

NOAA Technical Report NMFS Circular↗

USGS2020

Bridging the research-management gap: Landscape ecology in practice on public lands in the western United States

The field of landscape ecology has grown and matured in recent decades, but incorporating landscape science into land management decisions remains challenging. Many lands in the western United States are federally owned and managed for multiple uses, including recreation, conservation, and energy development. We argue for stronger integration of landscape science into the management of these public lands. We open by outlining the relevance of landscape science for public land planning, management, and environmental effects analysis, including pertinent laws and policies. We identify challenges to integrating landscape science into public land management, including the multijurisdictional nature and complicated spatial pattern of public lands, the capacity of agencies to identify and fill landscape science needs, and public perceptions about the meaning of landscape approaches to management. We provide several recent examples related to landscape monitoring, restoration, reclamation, and conservation in which landscape science products were developed specifically to support decision-making. We close by highlighting three actions - elevating the importance of science-management partnerships dedicated to coproducing actionable landscape science products, identifying where landscape science could foster efficiencies in the land-use planning process, and developing scenario-based landscape models for shrublands - that could improve landscape science support for public land planners and managers.

Arizona, California, Colorado, Idaho, Montana, New↗

USGS2004

Assessment of smolt condition: Biological and environmental interactions -- The impact of prey and predators on juvenile salmonids

The Bonneville Power Administration (BPA) has funded the Assessment of Smolt Condition project since 1987. During that time the project changed frequently to meet the information needs of fish managers by conducting studies throughout the Columbia River basin. Past research has examined the influence of smolt physiological development and health on migration rate; differences in development and migration rates of smolts of hatchery or wild origins; and the impacts of hatchery practices on smolt development. The Smolt Assessment Project will not continue beyond 2004, and here we report on the final study of the project in which we used bioenergetics modeling to investigate predation on juvenile salmonids by northern pikeminnow, smallmouth bass, and walleye in the lower Columbia River reservoirs.

Oregon, Washington↗

USGS2018

Drain tiles and groundwater resources: Understanding the relations

Executive Summary Drainage for agricultural production over the past 150 years has been an integral component of human-driven change to Minnesota’s rural landscapes. Benefits of drainage Historically, poorly drained soils across much of the State would often remain saturated or flooded after spring snowmelt, preventing timely farm operations such as tilling and planting crops (Arneman, 1963). Installation of agricultural drainage, both surface ditches and subsurface drainage, accelerated transport of water off farm fields and imparted producers higher crop yields (Beauchamp, 1987; Stoner and others, 1993). Agricultural drainage offered many other benefits such as preventing crop drown out, aerating the soil profile for improved plant growth, limiting surface runoff and soil erosion, and allowing farmers better access to croplands (Fausey and others, 1987). Without agricultural drainage on much of Minnesota’s croplands, it would have been difficult to realize high enough crop yields to remain economically viable. Environmental concerns While drainage of Minnesota croplands provided the benefits mentioned above, several environmental concerns result. These include wetland loss, degradation of downstream water quality, and reduced [potential for] recharge. Early agricultural drainage efforts (pre-20th century) led to the disappearance of much of Minnesota’s natural wetlands. Increased focus on preventing or mitigating wetland loss over the last 50 years has helped curtail further losses, even as agricultural drainage proceeds. Prior to establishment of Minnesota statehood, wetlands accounted for more than 10 million acres in Minnesota, including prairie wetlands, peatlands, and forest wetlands that comprised approximately 19 percent of the total land area (Palmer, 1915; King, 1980). In 2018, only half of Minnesota’s pre-settlement wetlands remain, mostly in parts of the State that have not experienced widespread drainage, such as northern Minnesota. Water-quality monitoring has shown that agricultural drainage, in particular the practice of subsurface drainage, provides a direct flow path for nutrient (nitrogen and soluble phosphorus) losses to surface water resources. The negative consequences of agricultural drainage on surface water quality are well documented (for example, Dinnes and others, 2002; Kladivko and others, 2004; Richards and others, 2008; Rozemeijer and others, 2010; Schottler and others, 2013). Agricultural basins with a high percentage of agricultural drainage have been implicated as part of the cause of the Gulf of Mexico hypoxia zone due to excessive nitrogen export (Goolsby and Battaglin, 2001; Randall and Mulla, 2001). The connection of hydrological effects of agricultural subsurface drainage on groundwater recharge and aquifers, on the other hand, has not been well-established. Agricultural subsurface drainage intercepts infiltrating water below croplands and directly discharges the water to nearby surface waters. However, the size of the water balance shift from drained water that would have evapotranspired or run off the land to drained water that would recharge underlying aquifers has been poorly characterized (Schuh, 2008). Drain Tiles and Groundwater Given the poor accounting of subsurface drainage effects on groundwater resources, the Minnesota Ground Water Association (MGWA) deemed it imperative that we document these effects so that groundwater resources in agricultural regions with substantial drainage can be effectively managed. This white paper documents the relations of drain tiles and groundwater resources and discusses the historical significance of agricultural drainage practices, the recognized positive benefits and potential negative consequences of agricultural drainage practices, and the gaps in understanding of the connections between agricultural drainage and groundwater resources. The major messages emerged from the findings of this white paper are: Complex history. Minnesota has a long history of agricultural drainage, spanning over 150 years. Agricultural drainage, and the eventual widespread usage of subsurface drainage, can be separated into at least four distinct periods of time: (a) early drainage to get water off the land, pre-20th century; (b) the boom and bust era (1900-1945); (c) postwar resurgence of subsurface drainage and early conservation efforts (1945-1960); and, (d) emergence of the environmental movement (1960 to present). The State’s regulatory framework that both allowed for drainage and controlled its usage during these periods is complicated and has been governed by a patchwork of both State and Federal statutes. Drainage Provinces. This white paper advances the concept of tile drainage provinces to aid in the discussion of regional differences in subsurface drainage and its overall effect on groundwater resources. Built upon the concept of groundwater provinces (Minnesota Department of Natural Resources, 2001), three distinct tile drainage provinces were conceptualized: (1) the Southeastern Province; (2) the SouthCentral Province; and, (3) the Western Province. The distinct geology and the soils that developed in these regions have implications for each region’s subsurface drainage density and the potential implications for groundwater. Knowledge gaps. Several critical knowledge gaps are identified in this paper, creating opportunities for further research to improve our understanding for better managed water resources: Extent of drainage is unknown. Direct estimates of the extent of subsurface drainage do not exist in Minnesota. However, several indirect methods have been utilized to estimate subsurface drainage, from the field-scale to countylevel through the use of geographic information system (GIS) analysis and aerial photography. Based on a 2012 U.S. Geological Survey estimate of subsurface drainage extent (Nakagaki and Wieczorek, 2016), about 21% of the land area in Minnesota has some density of subsurface drainage. Effect of drainage on underlying aquifers is unknown. A basic understanding of unconfined and confined aquifers and their recharge is necessary to connect any hydrological effects from agricultural drainage to groundwater. The basic goal of subsurface drainage to efficiently drain saturated soils clearly alters the water balance in croplands. However, its overall effect on groundwater resources has been poorly characterized, and is in large part determined by the geology below drained areas and the arrangement of underlying aquifers. Water balance shifts. An improved understanding of historical water balance shifts from pre- to post-drainage periods is necessary to understand long-term implications on net groundwater recharge. Also, more direct field-scale studies and indirect modeling studies are needed to characterize water budgets for fields with subsurface drainage.

Minnesota↗

USGS2003

Synergy of agroforestry and bottomland hardwood afforestation

Afforestation of bottomland hardwood forests has historically emphasized planting heavy-seeded tree species such as oak (Quercus spp.) and pecan (Caryaillinoensis) with little or no silvicultural management during stand development. Slow growth of these tree species, herbivory, competing vegetation, and limited seed dispersal, often result in restored sites that are slow to develop vertical vegetation structure and have limited tree diversity. Where soils and hydrology permit, agroforestry can provide transitional management that mitigates these historical limitations on converting cropland to forests. Planting short-rotation woody crops and intercropping using wide alleyways are two agroforestry practices that are well suited for transitional management. Weed control associated with agroforestry systems benefits planted trees by reducing competition. The resultant decrease in herbaceous cover suppresses small mammal populations and associated herbivory of trees and seeds. As a result, rapid vertical growth is possible that can 'train' under-planted, slower-growing, species and provide favorable environmental conditions for naturally invading trees. Finally, annual cropping of alleyways or rotational pulpwood harvest of woody crops provides income more rapidly than reliance on future revenue from traditional silviculture. Because of increased forest diversity, enhanced growth and development, and improved economic returns, we believe that using agroforestry as a transitional management strategy during afforestation provides greater benefits to landowners and to the environment than does traditional bottomland hardwood afforestation.

Book chapter↗

USGS2021

Small mammal shooting as a conduit for lead exposure in avian scavengers

Lead (Pb) exposure is a widespread wildlife conservation threat. Although commonly associated with Pb-based ammunition from big-game hunting, small mammals (e.g., ground squirrels) shot for recreational or pest-management purposes represent a potentially important Pb vector in agricultural regions. We measured the responses of avian scavengers to pest-shooting events and examined their Pb exposure through consumption of shot mammals. There were 3.4-fold more avian scavengers at shooting fields relative to those at fields with no recent shooting, and avian scavengers spent 1.8-fold more time feeding after recent shooting events. We isotopically labeled shot ground squirrels in the field with an enriched 15N isotope tracer; 6% of avian scavengers sampled within a 39 km radius reflected this tracer in their blood. However, 33% of the avian scavengers within the average foraging dispersal distance of nests (0.6−3.7 km) were labeled, demonstrating the importance of these shooting fields as a source of food for birds nesting in close proximity. Additionally, Pb concentrations in 48% of avian scavengers exceeded subclinical poisoning benchmarks for sensitive species (0.03−0.20 μg/g w/w), and those birds exhibited reduced δ-aminolevulinic acid dehydratase activity, indicating a biochemical effect of Pb. The use of shooting to manage small mammal pests is a common practice globally. Efforts that can reduce the use of Pb-based ammunition may lessen the negative physiological effects of Pb exposure on avian scavengers.

Oregon↗

USGS2023

A new DNA extraction method (HV-CTAB-PCI) for amplification of nuclear markers from open ocean-retrieved faeces of an herbivorous marine mammal, the dugong

Non-invasively collected faecal samples are an alternative source of DNA to tissue samples, that may be used in genetic studies of wildlife when direct sampling of animals is difficult. Although several faecal DNA extraction methods exist, their efficacy varies between species. Previous attempts to amplify mitochondrial DNA (mtDNA) markers from faeces of wild dugongs ( Dugong dugon ) have met with limited success and nuclear markers (microsatellites) have been unsuccessful. This study aimed to establish a tool for sampling both mtDNA and nuclear DNA (nDNA) from dugong faeces by modifying approaches used in studies of other large herbivores. First, a streamlined, cost-effective DNA extraction method that enabled the amplification of both mitochondrial and nuclear markers from large quantities of dugong faeces was developed. Faecal DNA extracted using a new ‘High Volume- Cetyltrimethyl Ammonium Bromide- Phenol-Chloroform-Isoamyl Alcohol’ (HV-CTAB-PCI) method was found to achieve comparable amplification results to extraction of DNA from dugong skin. As most prevailing practices advocate sampling from the outer surface of a stool to maximise capture of sloughed intestinal cells, this study compared amplification success of mtDNA between the outer and inner layers of faeces, but no difference in amplification was found. Assessment of the impacts of faecal age or degradation on extraction, however, demonstrated that fresher faeces with shorter duration of environmental (seawater) exposure amplified both markers better than eroded scats. Using the HV-CTAB-PCI method, nuclear markers were successfully amplified for the first time from dugong faeces. The successful amplification of single nucleotide polymorphism (SNP) markers represents a proof-of-concept showing that DNA from dugong faeces can potentially be utilised in population genetic studies. This novel DNA extraction protocol offers a new tool that will facilitate genetic studies of dugongs and other large and cryptic marine herbivores in remote locations.

Queensland↗

USGS2025

A molecular specimen bank for contemporary and future study captures landscape-scale biodiversity baselines before Klamath River dam removal

Global restoration and conservation of freshwater biodiversity are represented in practice by works such as the Klamath River Renewal Project (KRRP), the largest dam removal and river restoration in the United States, which has reconnected 640 river kilometers. With dam removals, many biological outcomes remain understudied due to a lack of pre-impact data and complex ecosystem recovery timeframes. To avoid this, we created the KRRP molecular library, an environmental specimen bank, for long-term curation of environmental nucleic acids collected from the restoration project. We used these initial samples, environmental DNA metabarcoding, and generalized linear mixed-effects models to evaluate patterns of pre-dam removal fish richness and diversity. Demonstrating the suitability to resolve biological differences, the baseline shows that tributary and mainstem streams had greater native fish diversity and 2.3–10.7 times greater native fish species richness than reservoirs. These and future sampling efforts should, at a minimum, allow tracking of fish community response to ecosystem restoration. Anticipating the acceleration of omics innovation, we preserved samples for long-term storage and identified requisite phases for sustained function and adaptation of the molecular library: securing a physical storage facility for genetic material, establishing a governance structure, and confirming support for archive management.

California, Oregon↗

USGS2012

National climate assessment technical report on the impacts of climate and land use and land cover change

This technical report responds to the recognition by the U.S. Global Change Research Program (USGCRP) and the National Climate Assessment (NCA) of the importance of understanding how land use and land cover (LULC) affects weather and climate variability and change and how that variability and change affects LULC. Current published, peer-reviewed, scientific literature and supporting data from both existing and original sources forms the basis for this report's assessment of the current state of knowledge regarding land change and climate interactions. The synthesis presented herein documents how current and future land change may alter environment processes and in turn, how those conditions may affect both land cover and land use by specifically investigating, * The primary contemporary trends in land use and land cover, * The land-use and land-cover sectors and regions which are most affected by weather and climate variability,* How land-use practices are adapting to climate change, * How land-use and land-cover patterns and conditions are affecting weather and climate, and * The key elements of an ongoing Land Resources assessment. These findings present information that can be used to better assess land change and climate interactions in order to better assess land management and adaptation strategies for future environmental change and to assist in the development of a framework for an ongoing national assessment.

Open-File Report↗

USGS2017

Selenium

Selenium (Se) was discovered in 1817 in pyrite from copper mines in Sweden. It is a trace element in Earth’s crust, with an abundance of three to seven orders of magnitude less than the major rock-forming elements. Commercial use of selenium began in the United States in 1910, when it was used as a pigment for paints, ceramic glazes, and red glass. Since that time, it has had many other economic uses—notably, in the 1930s and 1940s, when it was used in rectifiers (which change alternating current to direct current), and in the 1960s, when it began to be used in the liner of photocopier drums. In the 21st century, other compounds have replaced selenium in these older products; modern uses for selenium include energy-efficient windows that limit heat transfer and thin-film photovoltaic cells that convert solar energy into electricity. In Earth’s crust, selenium is found as selenide minerals, selenate and selenite salts, and as substitution for sulfur in sulfide minerals. It is the sulfide minerals, most commonly those in porphyry copper deposits, that provide the bulk of the selenium produced for the international commodity market. Selenium is obtained as a byproduct of copper refining and recovered from the anode slimes generated in electrolytic production of copper. Because of this, the countries that have the largest resources and (or) reserves of copper also have the largest resources and (or) reserves of selenium. Because selenium occurs naturally in Earth’s crust, its presence in air, water, and soil results from both geologic reactions and human activity. Selenium is found concentrated naturally in soils that overlie bedrock with high selenium concentrations. Selenium mining, processing, use in industrial and agricultural applications, and disposal may all contribute selenium to the environment. A well-known case of selenium contamination from agricultural practices was discovered in 1983 in the Kesterson National Wildlife Refuge in California. There, waters draining from agricultural fields created wetlands with high concentrations of dissolved selenium in the water. The selenium was taken up by aquatic wildlife and caused massive numbers of embryonic deformities and deaths. Regulatory agencies have since worked to safeguard ecological and human health by creating environmental exposure guidelines based upon selenium concentrations in water and in fish tissue. Any attempt to regulate selenium concentrations requires a delicate balance because selenium occurs naturally and is also a vital nutrient for the health of wildlife, domestic stock, and humans. Selenium is commonly added as a vitamin to animal feed, and in some regions of the United States and the world, it is added as an amendment to soils for uptake by agricultural crops. The important role of selenium in economic products, energy supply, agriculture, and health will continue for well into the future. The challenge to society is to balance the benefits of selenium use with the environmental consequences of its extraction. Increased understanding of the elemental cycle of selenium in the earth may lead to new (or unconventional) sources of selenium, the discovery of new methods of extraction, and new technologies for minimizing the transfer of selenium from rock to biota, so to protect environmental and human health.

Professional Paper↗