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At least 487 records · Page 27Linked to original sources
USGS2017

Envisioning, quantifying, and managing thermal regimes on river networks

Water temperatures fluctuate in time and space, creating diverse thermal regimes on river networks. Temporal variability in these thermal landscapes has important biological and ecological consequences because of nonlinearities in physiological reactions; spatial diversity in thermal landscapes provides aquatic organisms with options to maximize growth and survival. However, human activities and climate change threaten to alter the dynamics of riverine thermal regimes. New data and tools can identify particular facets of the thermal landscape that describe ecological and management concerns and that are linked to human actions. The emerging complexity of thermal landscapes demands innovations in communication, opens the door to exciting research opportunities on the human impacts to and biological consequences of thermal variability, suggests improvements in monitoring programs to better capture empirical patterns, provides a framework for suites of actions to restore and protect the natural processes that drive thermal complexity, and indicates opportunities for better managing thermal landscapes.

Washington↗
USGS2002

Influence of hydrology on life-history parameters of common freshwater fishes from southern Florida

Fishes are essential to the successful functioning of wetland food webs in southern Florida through their roles as prey and predators. Any changes that reduce the population sizes, community composition, or availability of aquatic animals will affect all facets of the ecology of these wetlands. In particular, small and medium-size fishes are important food items for most wading bird species. For this reason, fishes have been recognized by the multi-agency groups responsible for guiding the Everglades restoration process as a key indicator group by which to measure restoration success. Despite the importance of fish for management, gaps in baseline knowledge remain. Basic demographic information, termed life-history parameters, is needed to make predictions about their resilience under alternative management scenarios. These parameters include growth rate, age at maturation, fecundity and life expectancy. However, basic life-history parameters remain to be characterized, even for abundant fish species. Adding to the challenge, life-history characteristics of important Everglades species are known to be plastic in response to environmental conditions and survivorship and recruitment schedules are certain to be influenced by variation in hydroperiod. We intend to study the effect of hydroperiod on recruitment, size/age structure, growth, and fecundity, which, in turn, determine fish population dynamics. At present, data on fish reproduction, age and growth, and other life history characteristics are confined to a few species from a limited area of long-hydroperiod marsh in central Shark River Slough. As we continue the analysis and synthesis of data from the long-term fish collections, life-history information will help explain patterns of fluctuations in the time series. Accurate life-history data are also very important in building credible simulation models like ATLSS. Without empirical life-history data from a range of environments, the model will be simplistic and inadequate.

Florida↗
USGS2010

Spatial and stage-structured population model of the American crocodile for comparison of comprehensive Everglades Restoration Plan (CERP) alternatives

As part of the U.S. Geological Survey Priority Ecosystems Science (PES) initiative to provide the ecological science required during Everglades restoration, we have integrated current regional hydrologic models with American crocodile (Crocodylus acutus) research and monitoring data to create a model that assesses the potential impact of Comprehensive Everglades Restoration Plan (CERP) efforts on the American crocodile. A list of indicators was created by the Restoration Coordination and Verification (RECOVER) component of CERP to help determine the success of interim restoration goals. The American crocodile was established as an indicator of the ecological condition of mangrove estuaries due to its reliance upon estuarine environments characterized by low salinity and adequate freshwater inflow. To gain a better understanding of the potential impact of CERP restoration efforts on the American crocodile, a spatially explicit crocodile population model has been created that has the ability to simulate the response of crocodiles to various management strategies for the South Florida ecosystem. The crocodile model uses output from the Tides and Inflows in the Mangroves of the Everglades (TIME) model, an application of the Flow and Transport in a Linked Overland/Aquifer Density Dependent System (FTLOADDS) simulator. TIME has the capability to link to the South Florida Water Management Model (SFWMM), which is the primary regional tool used to assess CERP restoration scenarios. A crocodile habitat suitability index and spatial parameter maps that reflect salinity, water depth, habitat, and nesting locations are used as driving functions to construct crocodile finite rate of increase maps under different management scenarios. Local stage-structured models are integrated with a spatial landscape grid to display crocodile movement behavior in response to changing environmental conditions. Restoration efforts are expected to affect salinity levels throughout the habitat of the American crocodile. This modeling effort examines how CERP restoration alternatives will affect growth and survival rates of hatchling and juvenile crocodiles, hatchling dispersal to suitable nursery habitat, and relative abundance and distribution in response to changing salinity and water depth for all stage classes of crocodiles. The response of the American crocodile to restoration efforts will provide a quantifiable measure of restoration success. By applying the crocodile model to proposed restoration alternatives and predicting population responses, we can choose alternatives that approximate historical conditions, enhance habitat for multiple species, and identify future research needs.

Open-File Report↗
USGS2025

Assessing the Feasibility of Reintroducing San Francisco Gartersnakes ( Thamnophis sirtalis tetrataenia ) to La Honda Creek Open Space Preserve, San Mateo County, California

Reintroductions are used worldwide to increase the viability of species and restore native ecological communities. The success of reintroductions is usually judged by the establishment of self-sustaining populations, restoration of naturally occurring ecological communities, and the species resuming its ecological function. Recovery for the endangered San Francisco gartersnake (SFGS, Thamnophis sirtalis tetrataenia ), a subspecies with a small range in San Mateo and Santa Cruz counties in California, will likely require reintroduction and establishment of new populations within its historical range. La Honda Creek Open Space Preserve (LHC), managed by the Midpeninsula Regional Open Space District (MROSD), is one potential site for the reintroduction of SFGS. The La Honda Creek Open Space Preserve is a preserve managed for wildlife, recreation, grazing, and agriculture located near extant populations of SFGS inhabiting other open space preserves managed by MROSD (Cloverdale Ranch Open Space Preserve [CR]; Russian Ridge Open Space Preserve [RR]). We compared the habitat and prey communities at LHC to nearby open space preserves that support extant SFGS populations. Based on pond surveys done annually since 2008, the occurrence of California red-legged frogs ( Rana draytonii ), Sierran chorus frogs ( Pseudacris sierra ), and Pacific newts ( Taricha spp.) at LHC indicates a similar prey community at this preserve to those at CR and RR. Likewise, the landscape at LHC is a similar mosaic of wetlands, open grassland, shrub-dominated scrub, and coast redwood ( Sequoia sempervirens ) and Douglas fir ( Pseudotsuga menziesii ) forest that meets the habitat requirements for the life history of SFGS at CR and RR. One difference between LHC and preserves with SFGS populations is the lack of vegetative cover immediately adjacent to some wetlands at LHC, which could affect the ability of SFGS to disperse from wetlands and find terrestrial refuges. To evaluate alternative reintroduction strategies, we simulated population viability for a fixed number of SFGS released at LHC into one to six subpopulations (where each wetland represents a subpopulation) over a period from 5 to 20 years. Population simulations indicated that the highest average viability (in other words, the lowest probability of quasi-extinction) occurred when all SFGS were released into a single subpopulation and releases continued annually for 15 to 20 years. Our results indicate that LHC is a good candidate for reintroducing SFGS with suitable habitat, climate, and prey for this snake subspecies. Supporting SFGS populations at LHC could require habitat management to provide sufficient vegetative cover in the terrestrial environment near wetlands. Maintaining genetic diversity in the reintroduced population will also be paramount to ensure negative effects of inbreeding and homozygosity do not affect population viability.

California↗
USGS2020

Gear comparison study for sampling nekton in Barataria Basin marshes

This project was funded by the Louisiana Trustee Implementation Group (LA TIG) to support decisions related to investments in long-term monitoring. The LA TIG seeks to ensure long-term monitoring informs coastal restoration activities with the goal of sustaining and improving fisheries impacted by the Deepwater Horizon (DWH) Oil Spill. The project objective was to compare nekton catch across an estuarine gradient using different sampling gear with the goal of identifying trade-offs among nekton sampling approaches. To accomplish this objective, Louisiana Department of Wildlife and Fisheries (LDWF), The Water Institute of the Gulf (the Institute), Dynamic Solutions, LLC, Louisiana State University Agricultural Center (LSU AgCenter), and the U.S. Geological Survey (USGS) completed a field gear comparison study from 2018 to 2019. This work compared electrofisher and seine sampling at 12 fixed stations in Barataria Basin using data collected by LDWF. In addition, and in conjunction with LDWF monthly sampling, the same 12 fixed stations were sampled in May 2019 using a throw trap to compare nekton catch and assemblages collected with the throw trap, seine and electrofisher. LDWF has been conducting seine sampling since 1986, and seine data are used by the State of Louisiana to assess juvenile shrimp, crab and fish abundances, sizes and overall assemblages. In 2018, LDWF began conducting electrofisher sampling at 12 Barataria Basin seine stations in order to determine if the two gear types sample similar species and assemblages for potential future replacement of long-term seine sampling with electrofishing. Throw traps were included as they provide density estimates, which are ultimately the desired statistic used in modeling trophic webs, and are used in assessing habitat restoration outcomes. The project compared the nekton catch and assemblages collected using seine, electrofisher, and throw trap data from marsh edge habitats located across the estuarine gradient in Barataria Basin. Specifically, catch per unit effort (CPUE), species richness, species-specific total length (mm) distribution and nekton assemblages were compared between gear types. The first dataset was collected in May 2019 with throw trap (Appendix A), seine (LDWF data), and electrofisher (LDWF data) gear, and the second dataset (collected by LDWF) spanned 14 months of seine and electrofisher monthly sampling occurring from May 2018 through June 2019 at 12 stations in Barataria Basin. Key findings include that gear bias was not evident across the range of water quality conditions (salinity, temperature, o C, dissolved oxygen, mg L-1 , turbidity, NTU; Appendix B: scatter plots) captured during this pilot study, but differences in nekton catch per unit effort (CPUE) and assemblages were evident between gear types. However, those differences largely depended on the parameter examined. For example, the overall CPUE was highest for electrofishing, followed by seine, and then throw trap. When grass shrimp (the most abundant taxon collected) were removed from CPUE, the electrofisher and seine results were similar in CPUE. When CPUE was corrected for gear efficiency and total area sampled, the throw trap had the highest reported density of nekton sampled, followed by electrofisher and seine results. Electrofishing captured the highest number of species, which included more unique species compared to seine or throw trap catches, though all gear types captured at least one unique species. These highlight a need for caution in interpreting assemblage and density data when comparing datasets derived from different sampling methodologies. These key findings can help inform implementation and interpretation of long-term monitoring data in Louisiana as management decisions are made about coastal restoration projects to sustain and improve fisheries. There are trade-offs in selecting gear types for estuarine nekton monitoring of density, abundance, species richness, and assemblages. The table below (Table 1) summarizes some considerations when selecting gear types for long-term monitoring of estuarine nekton. In addition to biological and ecological considerations, other important considerations include cost, the labor required to conduct sampling, logistics, and potential uncertainties related to how effective each gear type is for sampling the wide variety of conditions found across Louisiana’s coastal habitats. For example, although electrofishing may capture higher CPUE, the equipment is more expensive to obtain and maintain compared to the other gear types. Most importantly, this table highlights differences in the nekton assemblages sampled by each gear type; this consideration is critical when designing the goals of a long-term monitoring program as it will inform how the data can be used and interpreted in the future. This report provides caveats, assumptions, and recommendations that can help support the Louisiana Coastal Protection and Restoration Authority (CPRA), LDWF and the LA TIG in comparing data from different gear types, and in making decisions for future monitoring. Findings from this study are limited to the range of water quality conditions occurring during these data collection events; these data and analyses could benefit from sampling across a wider range of water quality conditions, and collection of habitat structure and bottom type data which are not routinely collected but critically influence nekton. Further investigation examining how relative differences detected in key species abundances between gear types might impact ecosystem indicators and energetics in a modeled food web would provide valuable input to understand outputs of the Comprehensive Aquatic System Model for Barataria Basin, including the potential impacts of nekton monitoring decisions on food web models.

Louisiana↗
USGS2026

Satellite time series analysis to quantify changing climax ciénegas using a state and transition model approach

Ciénegas are rare wetlands in arid landscapes of the North American Southwest, historically providing critical ecological and hydrological functions but increasingly threatened by changing climate and land use pressures. This study quantifies changes in ciénega condition and floodplain dynamics using a state-and-transition model (STM) informed by expert knowledge and remote sensing. Key factors include woody plant encroachment, water availability, and soil aggradation. We mapped 31 ciénegas with high-resolution imagery and analyzed Landsat data (1985–2023) to assess vegetation health and moisture using the Normalized Difference Vegetation Index (NDVI) and Normalized Difference Infrared Index (NDII). Results show substantial interannual variability in phenology, water stress, and soil moisture, with regional drying and elevation strongly influencing ciénega resilience. We classified ciénegas into three functional states—healthy, desiccated, and dormant—and mapped their 2023 condition. Trend analyses indicate most ciénegas exhibit greening despite drought, though localized variability underscores the need for site-specific management. None are in a stable climax (reference) state; rather, they transition among states in response to external drivers. Increasing woody plant cover and surface drying, likely linked to declining regional water tables, favor deep-rooted species over wetland grasses—a pattern mirrored in adjacent control plots. Spatially explicit analysis revealed intra-ciénega variability often masked by aggregated data, highlighting the importance of high-resolution monitoring. Seasonal and long-term trends provide context for understanding ciénega dynamics, including degradation and restoration pathways. This study emphasizes the importance of groundwater conservation and demonstrates how remote sensing supports long-term monitoring. The STM framework offers a practical tool for adaptive management to sustain freshwater resources in arid environments.

Arizona, New Mexico↗
USGS2024

Leveraging extensive soil, vegetation, fire, and land treatment data to inform restoration across the sagebrush biome

Context Widespread ecological degradation has prompted calls for massive global investments in ecological restoration, yet limited resources necessitate efficient application of restoration efforts. In western North America, altered fire regimes are increasing the scale of restoration needed to preserve the sagebrush ( Artemisia species) biome but prioritizing and implementing effective restoration is complicated by the vast and heterogeneous sagebrush landscape, which includes gradients in climate, disturbance, and species composition. Objectives To develop spatially explicit and context-dependent estimates of treatment efficacy and sagebrush recovery rates. Methods We leveraged a suite of spatio-temporally extensive datasets to evaluate the influence of restoration treatments and environmental conditions on trends in post-disturbance sagebrush cover, with an emphasis on understanding differences between sites recovering naturally and sites receiving restoration treatments. We used estimates from these models to develop spatially explicit projections for sagebrush recovery, conditional on disturbance, restoration practice, and environmental conditions. Results We found seeding Artemisia spp. increased sagebrush cover over time relative to natural recovery, but this relationship depended on spring soil moisture availability and treatment methods. Natural recovery was positively influenced by soil moisture and sagebrush cover and negatively influenced by cumulative burns and annual herbaceous cover, while the influence of perennial herbaceous cover varied with soil moisture. Conclusions Our results provide biome-wide insights and spatially explicit tools that can inform economic cost-effectiveness analyses, restoration prioritization tools, and other scientific endeavors to ensure managers have the tools and information needed to effectively steward the sagebrush biome in a rapidly changing world.

Landscape Ecology↗
USGS2020

Hydrology of Haskell Lake and investigation of a groundwater contamination plume, Lac du Flambeau Reservation, Wisconsin

Haskell Lake is a shallow, 89-acre drainage lake in the headwaters of the Squirrel River, on the Lac du Flambeau Reservation in northern Wisconsin. The lake has long been valued by the Lac du Flambeau Band of Lake Superior Chippewa Indians (LDF Tribe) for abundant wild rice and game fish. In recent decades, however, wild rice has mostly disappeared from the lake and the fishery has declined. A petroleum contamination plume discovered in the 1990s in the shallow aquifer upgradient from the northern end of the lake poses a threat to the ecological health of the lake and the aquifer, which is the sole drinking water source for nearby residents and businesses. Understanding of the lake’s hydrology is important to the LDF Tribe as they seek to restore wild rice and maintain the ecological health of the Haskell Lake/Tower Creek watershed. An improved understanding of lithology in the area of the contamination plume, documentation of a contamination pathway from groundwater in the plume source area to Haskell Lake, and an understanding of the plume extent beneath the lake are needed to advance remediation efforts. Evaluation of the fraction of groundwater discharge that is contaminated relative to the overall lake water budget is desired as a first step towards determining the extent of ecological effects from the plume. A cooperative study between the U.S. Geological Survey and the LDF Tribe was initiated to quantify the lake water budget and the sources of water to the lake, to provide a rough estimate of the maximum quantity of groundwater discharge to the lake that may be contaminated, and to improve the conceptual understanding of the plume extent and subsurface materials in the area of contamination. The results of this study can help inform natural resource management of the Haskell Lake/Tower Creek watershed, including planned wild rice restoration and cleanup of the contaminant plume. During 2016–17, field data on lake and groundwater levels, gradients, fluxes, and subsurface lithology were collected using a variety of techniques that ranged from basic measurement of water levels and streamflows to distributed temperature sensing, vertical temperature profiling, and several shallow geophysical methods. The data were used to inform a MODFLOW–NWT model that simulated the contributing groundwatershed, including the water budget for Haskell Lake and Tower Creek using the Lake, Streamflow-Routing, and Unsaturated Zone-Flow Packages. Particle tracking with the MODFLOW solution (using MODPATH 6) was used to improve understanding of the downgradient extent of the contamination plume, estimate groundwater flux through the plume area, and delineate the groundwater contributing area (groundwatershed) for the lake/creek system. Linear uncertainty estimates for model results were computed during model parameter estimation using the software package PEST++. Results indicate groundwater discharge along the perimeter of Haskell Lake, with groundwater accounting for about 22 (± 11.5) percent of the lake water budget. Field data and particle tracking results indicate discharge of the entire contamination plume to Haskell Lake. Although the exact locations where contaminated groundwater enters the lake are unknown, the downgradient extent of the plume beneath Haskell Lake is likely limited to within about 700 feet from the shore. Groundwater flux through the plume accounts for at most about 1.4 percent of total groundwater discharge to Haskell Lake, or about 0.3 percent of the lake water budget. Most groundwater discharging to Haskell Lake and Tower Creek originates as terrestrial recharge. A lesser amount originates in or passes through neighboring lakes, including Buckskin, Crawling Stone, Broken Bow, Tippecanoe, and Jerms Lakes, as well as several unnamed kettles. The average age of simulated groundwater discharge to the lake is about 20 years.

Wisconsin↗
USGS2007

Second chance for the plains bison

Before European settlement the plains bison ( Bison bison bison ) numbered in the tens of millions across most of the temperate region of North America. Within the span of a few decades during the mid- to late-1800s its numbers were reduced by hunting and other factors to a few hundred. The plight of the plains bison led to one of the first major movements in North America to save an endangered species. A few individuals and the American Bison Society rescued the remaining animals. Attempts to hybridize cattle and bison when bison numbers were low resulted in extensive cattle gene introgression in bison. Today, though approximately 500,000 plains bison exist in North America, few are free of cattle gene introgression, 96% are subject to anthropogenic selection for commodity production, and only 4% are in herds managed primarily for conservation purposes. Small herd size, artificial selection, cattle-gene introgression, and other factors threaten the diversity and integrity of the bison genome. In addition, the bison is for all practical purposes ecologically extinct across its former range, with multiple consequences for grassland biodiversity. Urgent measures are needed to conserve the wild bison genome and to restore the ecological role of bison in grassland ecosystems. Socioeconomic trends in the Great Plains, combined with new information about bison conservation needs and new conservation initiatives by both the public and public sectors, have set the stage for significant progress in bison conservation over the next few years.

Biological Conservation↗
USGS2004

Postfire management in forested public lands of the western USA

Forest ecosystems in the western United States evolved over many millennia in response to disturbances such as wildfires. Land use and management practices have altered these ecosystems, however, including fire regimes in some areas. Forest ecosystems are especially vulnerable to postfire management practices because such practices may influence forest dynamics and aquatic systems for decades to centuries. Thus, there is an increasing need to evaluate the effect of postfire treatments from the perspective of ecosystem recovery. We examined, via the published literature and our collective experience, the ecological effects of some common postfire treatments. Based on this examination, promising postfire restoration measures include retention of large trees, rehabilitation of firelines and roads, and, in some cases, planting of native species. The following practices are generally inconsistent with efforts to restore ecosystem functions after fire: seeding exotic species, livestock grazing, placement of physical structures in and near stream channels, ground-based postfire logging, removal of large trees, and road construction. Practices that adversely affect soil integrity, persistence or recovery of native species, riparian functions, or water quality generally impede ecological recovery after fire. Although research provides a basis for evaluating the efficacy of postfire treatments, there is a continuing need to increase our understanding of the effects of such treatments within the context of societal and ecological goals for forested public lands of the western United States.

Western United States↗
USGS2025

Restoring the Florida Everglades: Insights on integrating sea level rise into decision-support tools

Although coastal ecosystems are impacted by climate change and sea-level rise, many ecological and hydrological models do not yet incorporate sea-level rise projections in their modeling outputs. Therefore, this research examined the various challenges that may prevent sea-level rise from being effectively incorporated in modeling and decision-support tools. We conducted semi-structured interviews with twenty-six professionals involved in Florida’s Everglades restoration. We applied the Diffusions of Innovations Theory to better understand factors that can impact practitioners’ adoption of newly designed decision-support tools that examine sea-level rise in the freshwater Everglades. The Diffusions of Innovations Theory provided insights into practitioners’ perceptions of these tools. We found that these practitioners have a strong interest in using dynamic decision-support tools to plan for sea-level rise impacts on Everglades restoration, particularly when they receive information at appropriate geographic and temporal scales and are given hands-on tools and training. However, challenges that prevent developing these tools include outdated data, limited organizational capacity and funding, limited use of long-term indicators, uncertainty about climate change impacts on local ecosystems, and lack of integration between hydrological and ecological models. Our research also highlights that greater availability of different types of tools can help to meet the needs of the scientific and non-scientific audiences involved in Everglades restoration.

Florida↗
USGS2023

Diverse portfolios: Investing in tributaries for restoration of large river fishes in the Anthropocene

Rehabilitation of large Anthropocene rivers requires engagement of diverse stakeholders across a broad range of sociopolitical boundaries. Competing objectives often constrain options for ecological restoration of large rivers whereas fewer competing objectives may exist in a subset of tributaries. Further, tributaries contribute toward building a “portfolio” of river ecosystem assets through physical and biological processes that may present opportunities to enhance the resilience of large river fishes. Our goal is to review roles of tributaries in enhancing mainstem large river fish populations. We present case histories from two greatly altered and distinct large-river tributary systems that highlight how tributaries contribute four portfolio assets to support large-river fish populations: 1) habitat diversity, 2) connectivity, 3) ecological asynchrony, and 4) density-dependent processes. Finally, we identify future research directions to advance our understanding of tributary roles and inform conservation actions. In the Missouri River United States, we focus on conservation efforts for the state endangered lake sturgeon, which inhabits large rivers and tributaries in the Midwest and Eastern United States. In the Colorado River, Grand Canyon United States, we focus on conservation efforts for recovery of the federally threatened humpback chub. In the Missouri River, habitat diversity focused on physical habitats such as substrate for reproduction, and deep-water habitats for refuge, whereas augmenting habitat diversity for Colorado River fishes focused on managing populations in tributaries with minimally impaired thermal and flow regimes. Connectivity enhancements in the Missouri River focused on increasing habitat accessibility that may require removal of physical structures like low-head dams; whereas in the Colorado River, the lack of connectivity may benefit native fishes as the disconnection provides refuge from non-native fish predation. Hydrologic variability among tributaries was present in both systems, likely underscoring ecological asynchrony. These case studies also described density dependent processes that could influence success of restoration actions. Although actions to restore populations varied by river system, these examples show that these four portfolio assets can help guide restoration activities across a diverse range of mainstem rivers and their tributaries. Using these assets as a guide, we suggest these can be transferable to other large river-tributary systems.

Frontiers in Environmental Science↗
USGS2023

Marshbird response to herbicide control of cattail in northwestern Minnesota

Wetlands provide essential habitat for a wide variety of wildlife species. In the once wetland-rich Prairie Pothole Region and adjacent areas of central North America, many wetlands have been converted to agricultural production. Many remaining wetlands experience ecological change via the invasion and spread of non-native plant species, such as non-native narrowleaf ( Typha angustifolia ) and hybrid cattail ( Typha x glauca ), which spread aggressively and displace native vegetation, especially in large, impounded wetlands. Management of wetlands in these landscapes often includes broad-scale herbicide application intended to break up mats of cattail and restore areas to more wildlife-friendly conditions. Although restoration of wildlife habitat is a common goal of such management, marshbird response to invasive cattail control is poorly understood. To evaluate the effects of cattail management on wetland wildlife, we conducted standardized call-broadcast surveys for 5 species of marshbirds at 9 study sites that included survey locations associated with areas treated with herbicide and paired areas not treated with herbicide in wetland impoundments in northwestern Minnesota, USA, using a before-after, control-impact study design. We surveyed American bitterns ( Botaurus lentiginosus ), least bitterns ( Ixobrychus exilis ), pied-billed grebes ( Podilymbus podiceps ), soras ( Porzana carolina ), and Virginia rails ( Rallus limicola ) during the breeding season prior to herbicide application (late summer and early autumn of 2015) and during the 3 breeding seasons after herbicide application (2016–2018). We modeled species counts using a generalized linear mixed model with year-by-treatment interactions as fixed effects and site as a random effect. Before herbicide application, expected mean counts did not differ between treatment and control survey locations. Three years post-treatment, we detected significant increases in expected mean counts at treatment compared to control survey locations for soras ( t 193 = −3.373, P = 0.020) and Virginia rails ( t 193 = −3.167, P = 0.037), and point estimates for all species except least bittern were higher at treatment survey locations. Overall, our results suggest that these marshbird species responded positively to herbicide control of invasive cattail and that breeding marshbirds in these and similar wetland systems may experience positive population response over a period of at least 3 years following treatment.

Minnesota↗
USGS2014

Collaborative modelling and integrated decision support system analysis of a developed terminal lake basin

A terminal lake basin in west-central Nevada, Walker Lake, has undergone drastic change over the past 90 yrs due to upstream water use for agriculture. Decreased inflows to the lake have resulted in 100 km 2 decrease in lake surface area and a total loss of fisheries due to salinization. The ecologic health of Walker Lake is of great concern as the lake is a stopover point on the Pacific route for migratory birds from within and outside the United States. Stakeholders, water institutions, and scientists have engaged in collaborative modeling and the development of a decision support system that is being used to develop and analyze management change options to restore the lake. Here we use an integrated management and hydrologic model that relies on state-of-the-art simulation capabilities to evaluate the benefits of using integrated hydrologic models as components of a decision support system. Nonlinear feedbacks among climate, surface-water and groundwater exchanges, and water use present challenges for simulating realistic outcomes associated with management change. Integrated management and hydrologic modeling provides a means of simulating benefits associated with management change in the Walker River basin where drastic changes in the hydrologic landscape have taken place over the last century. Through the collaborative modeling process, stakeholder support is increasing and possibly leading to management change options that result in reductions in Walker Lake salt concentrations, as simulated by the decision support system.

Nevada↗
USGS2021

Integrated hierarchical models to inform management of transitional habitat and the recovery of a habitat specialist

Quantifying the contribution of habitat dynamics relative to intrinsic population processes in regulating species persistence remains an ongoing challenge in ecological and applied conservation. Understanding these drivers and their relationship is essential for managing habitat‐dependent species, especially those that specialize in transitional habitats. Limitations in the ability of natural disturbance to mediate transitional habitat dynamics have resulted in a decline in early‐ and mid‐successional vegetation structure and prompted the need for aggressive habitat management to replace natural perturbations and increase habitat structural complexity. We describe a collaborative effort with a group of independent land managers to design an adaptive management program for restoring an imperiled ecosystem and recovering declining populations of an endemic habitat specialist. We developed a set of integrated, hierarchical models to estimate management‐mediated transition rates among vegetation classes in two dominant scrub communities and the species response (local colonization and extinction probabilities) as a function of habitat state. Models were fit using a long‐term data set of habitat and occupancy observations from 361 Florida scrub‐jay territories across two Florida counties. Occupancy model results correspond closely to previous approaches of estimating differential survival and reproductive success associated with habitat conditions, with highest colonization and lowest extinction rates estimated for those habitat states found to have the highest rates of survival and reproduction. In addition to offering an innovative approach for jointly modeling habitat and species population dynamics, the program we describe will also be of interest from a management perspective by providing guidance for developing collaborative, adaptive management frameworks from the ground up. We engaged land managers via workshops to specify objectives and desired state‐variable conditions, identify management alternatives, and elicit consensus opinions on model parameters. Treating expert opinions as pseudo‐observations to define Dirichlet priors allowed us to make use of existing management knowledge. Formal learning was then accumulated by updating transition probability estimates as management activities were implemented over the study period. We believe this adaptive management framework provides a useful approach for increasing our understanding of complex ecological relationships and hope that it will be adopted by others who have interest in informing management and conservation efforts.

Florida↗
USGS2022

A biological condition gradient for Caribbean coral reefs: Part II. Numeric rules using sessile benthic organisms

The Biological Condition Gradient (BCG) is a conceptual model used to describe incremental changes in biological condition along a gradient of increasing anthropogenic stress. As coral reefs collapse globally, scientists and managers are focused on how to sustain the crucial structure and functions, and the benefits that healthy coral reef ecosystems provide for many economies and societies. We developed a numeric (quantitative) BGC model for the coral reefs of Puerto Rico and the US Virgin Islands to transparently facilitate ecologically meaningful management decisions regarding these fragile resources. Here, reef conditions range from natural, undisturbed conditions to severely altered or degraded conditions. Numeric decision rules were developed by an expert panel for scleractinian corals and other benthic assemblages using multiple attributes to apply in shallow-water tropical fore reefs with depths <30 m. The numeric model employed decision rules based on metrics (e.g., % live coral cover, coral species richness, pollution-sensitive coral species, unproductive and sediment substrates, % cover by Orbicella spp.) used to assess coral reef condition. Model confirmation showed the numeric BCG model predicted the panel’s median site ratings for 84% of the sites used to calibrate the model and 89% of independent validation sites. The numeric BCG model is suitable for adaptive management applications and supports bioassessment and criteria development. It is a robust assessment tool that could be used to establish ecosystem condition that would aid resource managers in evaluating and communicating current or changing conditions, protect water and habitat quality in areas of high biological integrity, or develop restoration goals with stakeholders and other public beneficiaries.

Ecological Indicators↗
USGS2002

Meeting ecological and societal needs for freshwater

Human society has used freshwater from rivers, lakes, groundwater, and wetlands for many different urban, agricultural, and industrial activities, but in doing so has overlooked its value in supporting ecosystems. Freshwater is vital to human life and societal well-being, and thus its utilization for consumption, irrigation, and transport has long taken precedence over other commodities and services provided by freshwater ecosystems. However, there is growing recognition that functionally intact and biologically complex aquatic ecosystems provide many economically valuable services and long-term benefits to society. The short-term benefits include ecosystem goods and services, such as food supply, flood control, purification of human and industrial wastes, and habitat for plant and animal life—and these are costly, if not impossible, to replace. Long-term benefits include the sustained provision of those goods and services, as well as the adaptive capacity of aquatic ecosystems to respond to future environmental alterations, such as climate change. Thus, maintenance of the processes and properties that support freshwater ecosystem integrity should be included in debates over sustainable water resource allocation. The purpose of this report is to explain how the integrity of freshwater ecosystems depends upon adequate quantity, quality, timing, and temporal variability of water flow. Defining these requirements in a comprehensive but general manner provides a better foundation for their inclusion in current and future debates about allocation of water resources. In this way the needs of freshwater ecosystems can be legitimately recognized and addressed. We also recommend ways in which freshwater ecosystems can be protected, maintained, and restored. Freshwater ecosystem structure and function are tightly linked to the watershed or catchment of which they are a part. Because riverine networks, lakes, wetlands, and their connecting groundwaters, are literally the “sinks” into which landscapes drain, they are greatly influenced by terrestrial processes, including many human uses or modifications of land and water. Freshwater ecosystems, whether lakes, wetlands, or rivers, have specific requirements in terms of quantity, quality, and seasonality of their water supplies. Sustainability normally requires these systems to fluctuate within a natural range of variation. Flow regime, sediment and organic matter inputs, thermal and light characteristics, chemical and nutrient characteristics, and biotic assemblages are fundamental defining attributes of freshwater ecosystems. These attributes impart relatively unique characteristics of productivity and biodiversity to each ecosystem. The natural range of variation in each of these attributes is critical to maintaining the integrity and dynamic potential of aquatic ecosystems; therefore, management should allow for dynamic change. Piecemeal approaches cannot solve the problems confronting freshwater ecosystems. Scientific definitions of the requirements to protect and maintain aquatic ecosystems are necessary but insufficient for establishing the appropriate distribution between societal and ecosystem water needs. For scientific knowledge to be implemented science must be connected to a political agenda for sustainable development. We offer these recommendations as a beginning to redress how water is viewed and managed in the United States: (1) Frame national and regional water management policies to explicitly incorporate freshwater ecosystem needs, particularly those related to naturally variable flow regimes and to the linking of water quality with water quantity; (2) Define water resources to include watersheds, so that freshwaters are viewed within a landscape, or systems context; (3) Increase communication and education across disciplines, especially among engineers, hydrologists, economists, and ecologists to facilitate an integrated view of freshwater resources; (4) Increase restoration efforts, using well-grounded ecological principles as guidelines; (5) Maintain and protect the remaining freshwater ecosystems that have high integrity; and (6) Recognize the dependence of human society on naturally functioning ecosystems.

Ecological Applications↗
USGS2009

Alligators and crocodiles as indicators for restoration of Everglades ecosystems

Alligators and crocodiles integrate biological impacts of hydrological operations, affecting them at all life stages through three key aspects of Everglades ecology: (1) food webs, (2) diversity and productivity, and (3) freshwater flow. Responses of crocodilians are directly related to suitability of environmental conditions and hydrologic change. Correlations between biological responses and environmental conditions contribute to an understanding of species' status and trends over time. Positive or negative trends of crocodilian populations relative to hydrologic changes permit assessment of positive or negative trends in restoration. The crocodilian indicator uses monitoring parameters (performance measures) that have been shown to be both effective and efficient in tracking trends. The alligator component uses relative density (reported as an encounter rate), body condition, and occupancy rates of alligator holes; the crocodile component uses juvenile growth and hatchling survival. We hypothesize that these parameters are correlated with hydrologic conditions including depth, duration, timing, spatial extent and water quality. Salinity is a critical parameter in estuarine habitats. Assessments of parameters defined for crocodilian performance measures support these hypotheses. Alligators and crocodiles are the charismatic megafauna of the Everglades. They are both keystone and flagship species to which the public can relate. In addition, the parameters used to track trends are easy to understand. They provide answers to the following questions: How has the number of alligators or crocodiles changed? Are the animals fatter or thinner than they should be? Are the animals in the places (in terms of habitat and geography) where they should be? As surely as there is no other Everglades, no other single species defines the Everglades as does the American alligator. The Everglades is the only place in the world where both alligators and crocodiles exist. Crocodilians clearly respond to changes in hydrologic parameters of management interest. These relationships are easy to communicate and mean something to managers, decision makers, and the public. Having crocodilians on the list of system-wide, general indicators provides us with one of the most powerful tools we have to communicate progress of ecosystem restoration in Greater Everglades ecosystems to diverse audiences.

Florida↗