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At least 487 records · Page 27Linked to original sources
USGS2012

Development of vegetation based soil quality indices for mineralized terrane in arid and semi-arid regions

Soil quality indices (SQIs) are often management driven and attempt to describe key relationships between above- and below-ground parameters. In terrestrial systems, indices that were initially developed and modified for agroecosystems have been applied to non-agricultural systems in increasing number. We develop an SQI in arid and semi-arid ecosystems of the Western US impacted by different types of geologic mineralization using the relationship between vegetation community parameters and soil abiotic and biotic properties. We analyze these relations in soils associated with three different mineralization types: podiform chromite, Cu/Mo porphyry, and acid-sulfate gold vein systems at four different sites in California and Nevada. Soil samples were collected from undisturbed soils in both mineralized and nearby unmineralized substrates as well as from waste rock and tailings. Aboveground net primary productivity (ANPP), canopy cover and shrub density were measured for the vegetative communities. Minimum data sets were developed based on correlations between the soil and vegetation parameters, refined using principal components analysis, scored using non-linear functions, and combined into an overall SQI. The indices are comprised of one or two microbial parameters and three to six abiotic parameters, the latter consisting of nutrients and metals. Given the preliminary development of this approach, the parameters and combinations to arrive at an SQI for a given site cannot at this time be correlated or compared with that of another site. This SQI approach provides a means of quantifying disturbed ecosystem recovery resulting from mining, and could be applied to other disturbances in a way that readily distills the information for potential use by land managers. However, severely disturbed areas with little to no aboveground biomass, such as unreclaimed tailings, have likely crossed an ecological threshold that precludes the use of this type of monitoring tool.

California↗
USGS1991

Preliminary assessment of the effects of selenium in agricultural drainage on fish in the San Joaquin Valley

Concentrations of total selenium were measured in whole-body samples of seven fishes from the Sacramento and San Joaquin River systems and the San Francisco Bay complex. Concentrations of selenium (up to 11 µ g/g dry weight in whole-body composite samples) were highest in fish from canals and sloughs in the Grassland Water District (Grasslands) that received large inflows of subsurface agricultural drainage water. Slightly lower selenium concentrations occurred in fish from the San Joaquin River immediately downstream from tributaries draining the Grasslands. Although circumstantial evidence suggests that selenium-sensitive species such as bluegills and largemouth bass are being excluded from the Grasslands, conclusive evidence of selenium toxicity is still lacking. In response to earlier reports of high concentrations of selenium in several species collected from the Grasslands, the California Department of Health Services has urged people to limit consumption of fish from this region.

Book chapter↗
USGS2024

Examining inter-regional and intra-seasonal differences in wintering waterfowl landscape associations among Pacific and Atlantic flyways

The Central Valley of California (CVC) and Mid-Atlantic (MA) in the U.S. are both critical sites for nationwide food security, and many waterfowl species annually, especially during the winter, providing feeding and roosting locations for a variety of species. Mapping waterfowl distributions, using NEXRAD, may aid in the adaptive management of important waterfowl habitat and allow various government agencies to better understand the interface between wild and domestic birds and commercial agricultural practices. We used 9 years (2014–2023) of data from the US NEXRAD network to model winter waterfowl relative abundance in the CVC and MA as a function of weather, temporal period, environmental conditions, and landcover characteristics using boosted regression tree modelling. We were able to quantify the variability in effect size of 28 different covariates across space and time within two geographic regions which are critical to nationwide waterfowl management and host a high density of nationally important commercial agriculture. In general, weather, geographic (distance to features), and landcover condition (wetness index) predictors had the strongest relative effect on predicting wintering waterfowl relative abundance in both regions, while effects of land cover composition were more regionally and temporally specific. Increased daily mean temperature was a major predictor of increasing relative waterfowl abundance in both regions throughout the winter. Increasing precipitation had differing effects within regions, increasing relative waterfowl abundance in the MA, while decreasing in general within the CVC. Increasing relative waterfowl abundance in the CVC are strongly tied to the flooding of the landscape and rice availability, whereas waterfowl in the MA, where water is less limiting, are generally governed by waste grain availability and emergent wetland on the landscape. Waterfowl relative abundance in the MA was generally higher nearer to the Atlantic coast and lakes, while in the CVC they were higher nearer to lakes. Our findings promote a better understanding of spatial associations of waterfowl to landscape features and may aid in conservation and biosecurity management protocols.

California, Delaware, Maryland, New Jersey, North ↗
USGS2025

Drought in the Delta: Socio-ecological impacts, responses, and tools

Droughts are frequent events in the western United States, and can disrupt water supply and degrade water quality, challenging water management in the Sacramento–San Joaquin Delta (Delta). This chapter for the State of Bay–Delta Science report describes what drought means for the Delta, how drought is managed in the Delta, and how drought management has changed over time. Projections of future climate indicate the possibility of increased frequency and severity of droughts which would have increasing effects on California’s water system, society, and ecological functions within and beyond the Delta. California has experienced several major droughts in the 20th and 21st centuries, each of which has caused significant social and ecological impacts and motivated improvements in water management. Droughts decrease native fish populations, increase harmful algal blooms, and promote the spread of many invasive plant and animal species. For people living within the Delta and those that rely on Delta water exports, droughts increase drinking water costs and decrease agricultural production, negatively affecting agricultural economies and labor markets. Tools developed in response to droughts include actions that increase supply, such as building water infrastructure, actions to reduce demand, such as water conservation campaigns, and mitigation actions, such as monetary relief for drought-impacted communities. Improving drought resilience requires development of additional drought responses, increased forecasting accuracy, and increased awareness of impacts on vulnerable communities and ecosystems. Even with development of additional management actions, strategies, and regulations, there will likely be difficulties meeting the current levels of demand for water. Drought conditions already cause conflict between human and environmental uses, and with more extreme droughts possible in the future and projected increases in demand, it will be challenging to provide for all users’ needs even with major changes to water management in the Delta.

California↗
USGS2001

Mercury and methylmercury in water and sediment of the Sacramento River Basin, California

Mercury (Hg) and methylmercury (CH3Hg+) concentrations in streambed sediment and water were determined at 27 locations throughout the Sacramento River Basin, CA. Mercury in sediment was elevated at locations downstream of either Hg mining or Au mining activities where Hg was used in the recovery of Au. Methylmercury in sediment was highest (2.84 ng/g) at a location with the greatest wetland land cover, in spite of lower total Hg at that site relative to other river sites. Mercury in unfiltered water was measured at 4 locations on the Sacramento River and at tributaries draining the mining regions, as well as agricultural regions. The highest levels of Hg in unfiltered water (2248 ng/l) were measured at a site downstream of a historic Hg mining area, and the highest levels at all sites were measured in samples collected during high streamflow when the levels of suspended sediment were also elevated. Mercury in unfiltered water exceeded the current federal and state recommended criterion for protection of aquatic life (50 ng/l as total Hg in unfiltered water) only during high streamflow conditions. The highest loading of Hg to the San Francisco Bay system was attributed to sources within the Cache Creek watershed, which are downstream of historic Hg mines, and to an unknown source or sources to the mainstem of the Sacramento River upstream of historic Au mining regions. That unknown source is possibly associated with a volcanic deposit. Methylmercury concentrations also were dependent on season and hydrologic conditions. The highest levels (1.98 ng/l) in the Sacramento River, during the period of study, were measured during a major flood event. The reactivity of Hg in unfiltered water was assessed by measuring the amount available for reaction by a strong reducing agent. Although most Hg was found to be nonreactive, the highest reactivity (7.8% of the total Hg in water) was measured in the sample collected from the same site with high CH3Hg+ in sediment, and during the time of year when that site was under continual flooded conditions. Although Hg concentrations in water downstream of the Hg mining operations were measured as high as 2248 ng/l during stormwater runoff events, the transported Hg was found to have a low potential for geochemical transformations, as indicated by the low reactivity to the reducing agent (0.0001% of the total), probably because most of the Hg in the unfiltered water sample was in the mercury sulfide form.

Applied Geochemistry↗
USGS2012

Assessing potential effects of changes in water use with a numerical groundwater-flow model of Carson Valley, Douglas County, Nevada, and Alpine County, California

Rapid growth and development within Carson Valley in Douglas County, Nevada, and Alpine County, California, has caused concern over the continued availability of groundwater, and whether the increased municipal demand could either impact the availability of water or result in decreased flow in the Carson River. Annual pumpage of groundwater has increased from less than 10,000 acre feet per year (acre-ft/yr) in the 1970s to about 31,000 acre-ft/yr in 2004, with most of the water used in agriculture. Municipal use of groundwater totaled about 10,000 acre-feet in 2000. In comparison, average streamflow entering the valley from 1940 to 2006 was 344,100 acre-ft/yr, while average flow exiting the valley was 297,400 acre-ft/yr. Carson Valley is underlain by semi-consolidated Tertiary sediments that are exposed on the eastern side and dip westward. Quaternary fluvial and alluvial deposits overlie the Tertiary sediments in the center and western side of the valley. The hydrology of Carson Valley is dominated by the Carson River, which supplies irrigation water for about 39,000 acres of farmland and maintains the water table less than 5 feet (ft) beneath much of the valley floor. Perennial and ephemeral watersheds drain the Carson Range and the Pine Nut Mountains, and mountain-front recharge to the groundwater system from these watersheds is estimated to average 36,000 acre-ft/yr. Groundwater in Carson Valley flows toward the Carson River and north toward the outlet of the Carson Valley. An upward hydraulic gradient exists over much of the valley, and artesian wells flow at land surface in some areas. Water levels declined as much as 15 ft since 1980 in some areas on the eastern side of the valley. Median estimated transmissivities of Quaternary alluvial-fan and fluvial sediments, and Tertiary sediments are 316; 3,120; and 110 feet squared per day (ft 2 /d), respectively, with larger transmissivity values in the central part of the valley and smaller values near the valley margins. A groundwater-flow model of Quaternary and Tertiary sediments in Carson Valley was developed using MODFLOW and calibrated to simulate historical conditions from water years 1971 through 2005. The 35-year transient simulation represented quarterly changes in precipitation, streamflow, pumping and irrigation. Inflows to the groundwater system simulated in the model include mountain-front recharge from watersheds in the Carson Range and Pine Nut Mountains, valley recharge from precipitation and land application of wastewater, agricultural recharge from irrigation, and septic-tank discharge. Outflows from the groundwater system simulated in the model include evapotranspiration from the water table and groundwater withdrawals for municipal, domestic, irrigation and other water supplies. The exchange of water between groundwater, the Carson River, and the irrigation system was represented with a version of the Streamflow Routing (SFR) package that was modified to apply diversions from the irrigation network to irrigated areas as recharge. The groundwater-flow model was calibrated through nonlinear regression with UCODE to measured water levels and streamflow to estimate values of hydraulic conductivity, recharge and streambed hydraulic-conductivity that were represented by 18 optimized parameters. The aquifer system was simulated as confined to facilitate numerical convergence, and the hydraulic conductivity of the top active model layers that intersect the water table was multiplied by a factor to account for partial saturation. Storage values representative of specific yield were specified in parts of model layers where unconfined conditions are assumed to occur. The median transmissivity ( T ) values (11,000 and 800 ft 2 /d for the fluvial and alluvial-fan sediments, respectively) are both within the third quartile of T values estimated from specific-capacity data, but T values for Tertiary sediments are larger than the third quartile estimated from specific-capacity data. The estimated vertical anisotropy for the Quaternary fluvial sediments (9,000) is comparable to the value estimated for a previous model of Carson Valley. The estimated total volume of mountain-front recharge is equivalent to a previous estimate from the Precipitation-Runoff Modeling System (PRMS) watershed models, but less recharge is estimated for the Carson Range and more recharge is estimated for the Pine Nut Mountains than the previous estimate. Simulated flow paths indicate that groundwater flows faster through the center of Carson Valley and slower through the lower hydraulic-conductivity Tertiary sediments to the east. Shallow flow in the center of the valley is towards drainage channels, but deeper flow is generally directed toward the basin outlet to the north. The aquifer system is in a dynamic equilibrium with large inflows from storage in dry years and large outflows to storage in wet years. Pumping has historically been less than 10 percent of outflows from the groundwater system, and agricultural recharge has been less than 10 percent of inflows to the groundwater system. Three principal sources of uncertainty that affect model results are: (1) the hydraulic characteristics of the Tertiary sediments on the eastern side of the basin, (2) the composition of sediments beneath the alluvial fans and (3) the extent of the confining unit represented within fluvial sediments in the center of the basin. The groundwater-flow model was used in five 55-year predictive simulations to evaluate the long-term effects of different water-use scenarios on water-budget components, groundwater levels, and streamflow in the Carson River. The predictive simulations represented water years 2006 through 2060 using quarterly stress periods with boundary conditions that varied cyclically to represent the transition from wet to dry conditions observed from water years 1995 through 2004. The five scenarios included a base scenario with 2005 pumping rates held constant throughout the simulation period and four other scenarios using: (1) pumping rates increased by 70 percent, including an additional 1,340 domestic wells, (2A) pumping rates more than doubled with municipal pumping increased by a factor of four over the base scenario, (2B) pumping rates of 2A with 2,040 fewer domestic wells, and (3) pumping rates of 2A with 3,700 acres removed from irrigation. The 55-year predictive simulations indicate that increasing groundwater withdrawals under the scenarios considered would result in as much as 40 ft and 60 ft of water-table decline on the west and east sides of Carson Valley, respectively. The water table in the central part of the valley would remain essentially unchanged, but water-level declines of as much as 30 ft are predicted for the deeper, confined aquifer. The increased withdrawals would reduce the volume of groundwater storage and decrease the mean downstream flow in the Carson River by as much as 16,500 acre-ft/yr. If, in addition, 3,700 acres were removed from irrigation, the reduction in mean downstream flow in the Carson River would be only 6,500 acre-ft/yr. The actual amount of flow reduction is uncertain because of potential changes in irrigation practices that may not be accounted for in the model. The projections of the predictive simulations are sensitive to rates of mountain-front recharge specified for the Carson Range and the Pine Nut Mountains. The model provides a tool that can be used to aid water managers and planners in making informed decisions. A prudent management approach would include continued monitoring of water levels on both the east and west sides of Carson Valley to either verify the predictions of the groundwater-flow model or to provide additional data for recalibration of the model if the predictions prove inaccurate.

California;Nevada↗
USGS1993

Streamflow, dissolved solids, suspended sediment, and trace elements, San Joaquin River, California, June 1985-September 1988

The 1985-88 study period included hydrologic extremes throughout most of central California. Except for an 11-month period during and after the 1986 flood, San Joaquin River streamflows during 1985-88 were generally less than median for 1975-88. The Merced Tuolumne, and Stanislaus Rivers together comprised 56 to 69 percent of the annual San Joaquin River flow, Salt and Mud Sloughs together comprised 6 to 19 percent, the upper San Joaquin River comprised 2 to 25 percent, and unmeasured sources from agricultural discharges and ground water accounted for 13 to 20 percent. Salt and Mud Sloughs and the unmeasured sources contribute most of the dissolved-solids load. The Merced, Tuolumne, and Stanislaus Rivers greatly dilute dissolved-solids concentrations. Suspended-sediment concentration peaked sharply at more than 600 milligrams per liter during the flood of February 1986. Concentrations and loads varied seasonally during low-flow conditions, with concentrations highest during the early summer irrigation season. Trace elements present primarily in dissolved phases are arsenic, boron, lithium, molybdenum, and selenium. Boron concentrations exceeded the irrigation water-quality criterion of 750 micrograms per liter more than 75 percent of the time in Salt and Mud Sloughs and more than 50 percent of the time at three sites on the San Joaquin River. Selenium concentrations exceeded the aquatic-life criterion of 5 micrograms per liter more than 75 percent of the time in Salt Slough and more than 50 percent of the time in Mud Slough and in the San Joaquin River from Salt Slough to the Merced River confluence. Concentrations of dissolved solids, boron, and selenium usually are highest during late winter to early spring, lower in early summer, higher again in mid-to-late summer, and the lowest in autumn, and generally correspond to seasonal inflows of subsurface tile-drain water to Salt and Mud Sloughs. Trace elements present primarily in particulate phases are aluminum, chromium, copper, iron, manganese, nickel, and zinc, none of which cause significant water-quality problems in the river.

California↗
USGS2008

Quantifying Ground-Water and Surface-Water Discharge from Evapotranspiration Processes in 12 Hydrographic Areas of the Colorado Regional Ground-Water Flow System, Nevada, Utah, and Arizona

Rapid population growth in southern Nevada has increased the demand for additional water supplies from rural areas of northern Clark and southern Lincoln counties to meet projected water-supply needs. Springs and rivers in these undeveloped areas sustain fragile riparian habitat and may be susceptible to ground-water withdrawals. Most natural ground-water and surface-water discharge from these basins occurs by evapotranspiration (ET) along narrow riparian corridors that encompassed about 45,000 acres or about 1 percent of the study area. This report presents estimates of ground- and surface-water discharge from ET across 3.5 million acres in 12 hydrographic areas of the Colorado Regional Ground-Water Flow System. Ground-and surface-water discharge from ET were determined by identifying areas of ground- and surface-water ET, delineating areas of similar vegetation and soil conditions (ET units), and computing ET rates for each of these ET units. Eight ET units were identified using spectral-reflectance characteristics determined from 2003 satellite imagery, high-resolution aerial photography, and land classification cover. These ET units are dense meadowland vegetation (200 acres), dense woodland vegetation (7,200 acres), moderate woodland vegetation (6,100 acres), dense shrubland vegetation (5,800 acres), moderate shrubland vegetation (22,600 acres), agricultural fields (3,100 acres), non-phreatophytic areas (3,400,000 acres), and open water (300 acres). ET from diffuse ground-water and channelized surface-water is expressed as ETgs and is equal to the difference between total annual ET and precipitation. Total annual ET rates were calculated by the Bowen ratio and eddy covariance methods using micrometeorological data collected from four sites and estimated at 3.9 ft at a dense woodland site (February 2003 to March 2005), 3.6 ft at a moderate woodland site (July 2003 to October 2006), 2.8 ft at a dense shrubland site (June 2005 to October 2006), and 1.5 ft at a moderate shrubland site (April 2006 to October 2006). Annual ETgs rates were 3.4 ft for dense woodland vegetation, 3.2 ft for moderate woodland vegetation, 2.2 ft for dense shrubland vegetation, and 1.0 ft for moderate shrubland vegetation. Published annual rates of ETgs were used for the other ET units found in the study area. These rates were 3.4 ft for dense meadowland vegetation, 5.2 ft for agricultural fields, and 4.9 ft for open water. For the non-phreatophytic ET unit, ETgs was assumed to be zero. Estimated ground- and surface-water discharge from ET was calculated by multiplying the ETgs by the ET-unit acreage and equaled 24,480 acre-ft for dense woodland vegetation, 19,520 acre-ft for moderate woodland vegetation, 12,760 acre-ft for dense shrubland vegetation, 22,600 acre-ft for moderate shrubland vegetation, 680 acre-ft for dense meadowland vegetation, 16,120 acre-ft for agricultural fields, 1,440 acre-ft for open water, and 0 acre-ft for the non-phreatophytic ET unit. Estimated ground-water and surface-water discharge from ET from each hydrographic area was calculated by summing the total annual ETgs rate for ET units found within each hydrographic area and equaled 1,952 acre-ft for the Black Mountains Area, 6,080 acre-ft for California Wash, 4,090 acre-ft for the Muddy River Springs Area, 11,510 acre-ft for Lower Moapa Valley, 51,960 acre-ft for the Virgin River Valley, 16,168 acre-ft for Lower Meadow Valley Wash, 5,840 acre-ft for Clover Valley, and 0 acre-ft for Coyote Spring Valley, Kane Springs Valley, Tule Desert, Hidden Valley (North), and Garnet Valley. The annual discharge from ETgs for the study area totals about 98,000 acre-ft.

Scientific Investigations Report↗
USGS2025

Effects of flow on pesticides in water and zooplankton in the northern Sacramento-San Joaquin Delta

Zooplankton are a key food source for juvenile fishes in estuaries worldwide, including California’s Sacramento–San Joaquin Delta (hereafter Delta); both zooplankton quality and quantity are critical to ecosystem health. Zooplankton may be affected by pesticides in water and the food web, and the Delta is known to contain complex pesticide mixtures. In this study, we evaluated pesticide concentrations in water and zooplankton in the northern Delta during (1) the summer–fall of 2017, 2018, and 2019, which included periods of augmented pulse flows from agriculture tailwater, and (2) across a full seasonal cycle from May 2019 to March 2020. We quantified changes in pesticide concentration in response to environmental factors. We found that zooplankton showed more frequent detections of hydrophobic pesticides compared to more frequent detections of hydrophilic compounds in water. Pesticide concentrations were influenced by flow, pesticide application, and season, but the effects of these environmental factors differed by habitat (Sacramento River or Yolo Bypass Toe Drain). Pesticides in water responded similarly to environmental factors in the Sacramento River and Yolo Bypass, whereas pesticides in zooplankton responded differently. In water, we found more detections and higher concentrations at higher flows in the Yolo Bypass and Sacramento River, but responses to pesticide application varied by habitat. Alternatively, pesticide concentrations in zooplankton increased in the Yolo Bypass with increasing flow (correlated with flow pulses) and changed seasonally; whereas, pesticide concentrations in zooplankton in the Sacramento River decreased at higher flows, and decreased with or did not respond to higher pesticide application in the watershed. Our study suggests that augmented flows—particularly those using agricultural tailwater—may have unintended negative ecological effects that could partially offset benefits to the food web and fishes in the northern Delta, underscoring the complex interplay among factors that drive increased pesticide exposure.

California↗
USGS2000

Identifying wells downstream from Laguna Dam that yield water that will be replaced by water from the Colorado River, Arizona and California

This report summarizes a comprehensive study and development of the method documented in Owen-Joyce and others (2000). That report and one for the area upstream from Laguna Dam (Wilson and Owen-Joyce, 1994) document the accounting-surface method to identify wells that yield water that will be replaced by water from the Colorado River. Downstream from Laguna Dam, the Colorado River is the source for nearly all recharge to the river aquifer. The complex surface-water and ground-water system that exists in the area is, in part, the result of more than 100 years of water-resources development. Agriculture is the principal economy and is possible only with irrigation. The construction and operation of canals provides the means to divert and distribute Colorado River water to irrigate agricultural lands on the flood plains and mesas along the Colorado and Gila Rivers, in Imperial and Coachella Valleys, and in the area upstream from Dome along the Gila River. Water is withdrawn from wells for irrigation, dewatering, and domestic use. The area downstream from Laguna Dam borders additional areas of agricultural development in Mexico where Colorado River water also is diverted for irrigation.

Arizona;California↗
USGS2011

A tree-ring reconstruction of the salinity gradient in the northern estuary of San Francisco Bay

Blue oak tree-ring chronologies correlate highly with winter–spring precipitation totals over California, with Sacramento and San Joaquin river stream flow, and with seasonal variations in the salinity gradient in San Francisco Bay. The convergence of fresh and saline currents can influence turbidity, sediment accumulation, and biological productivity in the estuary. Three selected blue oak chronologies were used to develop a 625-year-long reconstruction of the seasonal salinity gradient, or low salinity zone (LSZ), which provides a unique perspective on the interannual-to-decadal variability of this important estuarine habitat indicator. The reconstruction was calibrated with instrumental LSZ data for the winter–spring season, and explains 73% of the variance in the February–June position of the LSZ from 1956 to 2003. Because this calibration period post-dates the sweeping changes that have occurred to land cover, channel morphology, and natural streamflow regimes in California, the reconstruction provides an idealized estimate for how the LSZ might have fluctuated under the seasonal precipitation variations of the past 625 years, given the modern geometry and bathymetry of the estuary and land cover across the drainage basin. The February–June season integrates precipitation and runoff variability during the cool season, and does not extend into the late-summer dry season when LSZ extremes can negatively affect Sacramento–San Joaquin Delta (Delta) agriculture and some aquatic organisms. However, there is such strong inter-seasonal persistence in the instrumental LSZ data that precipitation totals during the cool season can strongly pre-condition LSZ position in late summer. The 625-year-long reconstruction indicates strong interannual and decadal variability, the frequent recurrence of consecutive 2-year LSZ maxima and minima, large-scale ocean atmospheric forcing, and an interesting asymmetrical influence of warm El Niño–Southern Oscillation (ENSO) events.

California↗
USGS2022

Hydrogeologic characterization of the San Antonio Creek Valley watershed, Santa Barbara County, California

The San Antonio Creek Valley watershed (SACVW) is located in western Santa Barbara County, about 15 miles south of Santa Maria and 55 miles north of Santa Barbara, California. The SACVW is about 135 square miles and encompasses the San Antonio Creek Valley groundwater basin; the SACVW is separated from adjacent groundwater basins by the Casmalia and Solomon Hills to the north, and the Purisima Hills to the south. At the western, downstream part of the valley, uplifted, consolidated rocks cause groundwater to discharge at land surface at Barka Slough. Since the late 1800s, groundwater has been the primary source of water for agricultural, military, municipal, and domestic uses. Groundwater withdrawal by pumping exceeded the amount of water replenishing the aquifer system during water years 1948–2018, causing groundwater-level declines of more than 150 feet in parts of the valley and reducing base flow at Barka Slough. Reliance on groundwater for agricultural water use (primarily for the irrigation and frost protection of vineyards, and fruit and berry crops) continues to strain the sustainability of the groundwater system. Through a cooperative agreement, the Santa Barbara County Water Agency and Vandenberg Space Force Base invited the U.S. Geological Survey to address declines in groundwater levels, develop a better understanding of the hydrogeologic system, and provide tools to help evaluate and manage the effects of future development of the San Antonio Creek Valley groundwater basin within the encompassing San Antonio Creek Valley watershed (SACVW). The objectives of this study were to (1) refine the hydrogeologic framework of the San Antonio Creek Valley watershed, (2) quantify the hydrologic budget of the valley, and (3) develop hydrologic modeling tools to evaluate and aid in managing the groundwater resource. This report focuses on the first and second objectives to construct a hydrogeologic framework and characterize the historical and present-day hydrologic conditions of the SACVW during water years 1948–2018. As part of the second objective, work included quantifying the hydrologic budget and evaluating the hydrogeologic system using a combination of existing data and geologic and hydrologic data collected for this study. The groundwater-flow system in the SACVW consists of five hydrogeologic units. These separate water-bearing units were identified based on hydrogeologic properties, such as sediment grain size, vertical-head differences in multiple-depth, monitoring-well sites, long-term groundwater level responses to pumping and climate, and the chemical character of groundwater and groundwater age in the mostly semi-consolidated to unconsolidated basin-fill sediments. The hydrogeologic units that comprise the different aquifers vary in their lithologic composition. The upper and lower aquifers (upper Paso Robles Formation, and lower Paso Robles Formation and Careaga Sandstone, respectively) are relatively coarse grained and are comprised of sand, gravel, and clay; the middle confining unit (the middle Paso Robles Formation) is relatively fine grained and is comprised of primarily clay, silt, and sand. The Pezzoni-Casmalia and Los Alamos faults, which are inferred to transect the SACVW between the western and eastern areas of the valley floor, do not appear to substantially affect the groundwater system. Present-day recharge to the study area occurs primarily as infiltration from precipitation and streams in the upland areas of the Casmalia Hills and Solomon Hills, and along the main channel of San Antonio Creek. Reported estimates of annual natural recharge during water years 1948–2018 generally ranged from about 5,000 acre-feet to more than about 30,000 acre-feet. Stable and radioactive isotopes show that groundwater from the lower aquifer is old and probably was recharged as infiltration from precipitation and streams in the eastern upland areas of the Solomon Hills; however, the infiltration and recharge from these sources probably does not occur under present-day climatic conditions. Anthropogenic recharge, from sources such as return flow from agricultural irrigation, municipal water systems, and wastewater effluent, was estimated to range from about 600 acre-feet in 1948 to about 6,600 acre-feet in 2018. The average annual amount of groundwater removed from the SACVW by pumping during 1948–2018 was estimated to be about 17,200 acre-feet per year, increasing from about 3,000 acre-feet in 1948 to about 32,600 acre-feet in 2018. Estimates of annual pumpage generally exceeded estimates of annual recharge beginning in the mid-1970s and continuing through 2018. The predominant direction of groundwater flow under historical and present-day conditions was from the eastern uplands in the Solomon Hills to the west along San Antonio Creek to the discharge area in Barka Slough, and from the northern uplands in the Casmalia Hills south to San Antonio Creek. Pumpage since the early 1900s and the subsequent groundwater-level declines have substantially reduced the amount of natural groundwater discharge at Barka Slough. Estimates of base flow to San Antonio Creek at the western, downstream extent of the SACVW have varied over time in response to changes in groundwater pumpage and climate; however, there was an overall decline in base flow during water years 1956–2018, decreasing from an average of about 1,700 acre-feet per year during 1956–69, to about 300 acre-feet per year during 2016–18. The long-term extraction of groundwater correlates with a decrease in groundwater levels by more than about 150 feet since the early 1940s in the eastern part of the basin near Los Alamos, and as much as about 50 feet in the upland areas and in the western part of the basin. At Barka Slough, groundwater levels have declined below land surface in some places, altering native riparian vegetation in and around the slough. Surface-water quality in the SACVW varied depending on location and the time of year the samples were collected and on the amount of annual precipitation Most groundwater in the SACVW was calcium-bicarbonate-type water with total dissolved-solids concentrations of about 500–800 milligrams per liter generally representing water naturally recharged as infiltration from precipitation and streams. Total dissolved-solids concentrations in some wells ranged from 800 to 8,000 milligrams per liter, suggesting mixing of naturally recharged infiltrated water with water associated with oil-bearing geologic formations, agricultural products, or the evaporation of shallow groundwater. Concentrations of total dissolved solids and the chemical constituents chloride, nitrate plus nitrite (as nitrogen), calcium, and magnesium at selected wells generally increased during water years 1980–2018; increasing concentrations of these constituents may be associated with the expansion of agriculture in the watershed over time and the corresponding increase in the use of nitrates and calcium- and magnesium-based fertilizers and soil additives in modern agricultural practices. The predominant direction of groundwater flow during historical and present-day conditions was from the eastern uplands in the Solomon Hills to the west along San Antonio Creek toward Barka Slough, and from the western uplands in the Casmalia Hills south to San Antonio Creek. The age of groundwater in the SACVW was evaluated using radioactive isotopes, and the flow of groundwater within the SACVW was evaluated using radioactive and stable isotopes. Modern groundwater (recharged after 1952) was generally found adjacent to San Antonio Creek and its tributaries in wells with perforated depths that averaged about 270 feet below land surface. Pre-modern groundwater (recharged before 1952) was found in wells that had average perforation depths of about 540 ft below land surface. Pre-modern groundwater identified in wells in the eastern upland area is interpreted to have had long, slow travel times to the western part of the SACVW where it was eventually discharged as base flow at Barka Slough or extracted as groundwater pumpage.

California↗
USGS2023

Selenium hazards in the Salton Sea environment—Summary of current knowledge to inform future wetland management

Quaternary marine and continental shales in the western United States are sources of selenium that can be loaded into the aquatic environment through mining, agricultural, and energy production processes. The mobilization of selenium from shales through agricultural irrigation has been recognized since the 1930s; however, discovery of deformities in birds and other wildlife using agricultural habitats during the 1980s spurred studies to determine the extent and effects of the contamination. Through these early studies, researchers determined that biota in the Salton Sea drainage basin was at risk from legacy selenium contamination in the Colorado River watershed. The Salton Sea and its surrounding managed and unmanaged wetlands provide vital inland habitat and trophic support for diverse assemblages of resident and migratory wildlife, and understanding regional selenium hazards for these trust species is a priority for many Federal and State agencies. The modern Salton Sea is a shallow, landlocked saline lake in Riverside and Imperial Counties (not shown) of California that is sustained by irrigation return and perennial river inflow. Changes in water transfer agreements under the 2003 Quantification Settlement Agreement (QSA) have resulted in reduced irrigation flow, declining lake levels, and the evolution of unmanaged wetlands in areas where drains and rivers no longer reach the Salton Sea. These wetlands provide additional habitat for some species of concern, but their potential to increase selenium hazards for trust species is largely unknown. From the 1980s to 2020, efforts to document selenium contamination and effects throughout the region have resulted in a considerable amount of selenium data from the Salton Sea and its surrounding drainage basin; however, no long-term (greater than 20 years), consistent sampling program has been established, and all data have been collected by different entities using a variety of protocols and analytical techniques. This lack of coordination has been previously documented in regional management plans and has led to difficulty in reliably assessing selenium hazards in the Salton Sea environment. This report provides a summary of the available disparate selenium information collected from water, sediment, and biota in the Salton Sea region since the 1980s and to identify data gaps that need to be filled to understand the potential effects of selenium on species of concern, including federally endangered desert pupfish ( Cyprinodon macularius ) and Yuma Ridgway’s Rail ( Rallus obsoletus yumanensis; formerly Yuma Clapper Rail, Rallus longirostris yumanensis ). Available data from the Salton Sea drainage basin show that water from the Colorado River has the lowest selenium concentration of all surface water sources. All other surface water flowing into the Salton Sea has elevated selenium concentrations due to evaporation and evapotranspiration that occurs in agricultural fields and associated water delivery infrastructure or leaching of selenium from irrigated farmland soils. The Salton Sea has lower selenium concentrations because of various biogeochemical processes that recycle selenium into the sediment or volatilize it to the atmosphere; however, these mechanisms are not well defined, and it is not clear if selenium cycling will change in response to possible changes in the oxidation state of the Salton Sea bottom waters as water levels decline. Agricultural drains have the highest average selenium concentrations, but few drains have been sampled since changes in irrigation practices have occurred (due to the 2003 QSA). Groundwater selenium concentrations are variable; some wells south of the Salton Sea have selenium concentrations as high as 300 micrograms per liter (µg/L), whereas selenium concentrations are below detection in other wells. Groundwater and surface-water geothermal discharge zones around the margins of the Salton Sea and in unmanaged wetlands have not been studied in detail, and published selenium measurements are not available for these surface features. Selenium concentrations in the sediment of the Salton Sea drainage basin are highest in wetland particulate organic matter and the Salton Sea lakebed, indicating that removal of selenium from the water to the sediment has been a primary mechanism for keeping selenium concentrations low in the water column. Sediment selenium concentrations in wetlands are lower than in the Salton Sea but higher than inflowing drains and rivers, indicating the lentic wetland sites also may be important sinks for selenium because of biogeochemical processes. Sediment selenium data have not been collected in agricultural drains since changes in irrigation practices occurred (due to the 2003 QSA), and it is unknown if selenium sequestration from the water column has changed in these systems. We divided biological data into broad taxonomic categories, including primary producers, invertebrates, herpetofauna, mammals, fishes, and birds to facilitate evaluation of selenium concentrations and spatiotemporal trends observed in the Salton Sea. Overall, selenium concentrations were substantially greater in algae samples compared to all vascular plant samples combined. Median selenium concentrations in several invertebrate taxa (Chironomidae, Formicidae, Corixidae, Corbiculidae and Nereididae, and Decapoda) exceeded the maximum suggested dietary threshold of 3.0–4.0 micrograms per gram (µg/g) dry weight (dw) for predators consuming invertebrates in aquatic food webs. The greatest number of samples were collected from fish, and selenium distributions among species and locations showed that the range for most samples was lower than the U.S. Environmental Protection Agency selenium criterion for aquatic life (8.5 µg/g dw whole body, 11.3 µg/g dw fillets). The median selenium concentrations for whole body fish were below the selenium criterion in most locations, except for bairdiella ( Bairdiella icistia ) from the Salton Sea and irrigation drains, a few individual tilapia spp. (family Cichlidae, including genera Tilapia, Oreochromis , and their hybrids) from the river and river outlets, and several western mosquitofish ( Gambusia affinis ) and sailfin molly ( Poecilia latipinna ) from irrigation drain outlets. For avian samples combined among years and locations, median selenium concentrations in livers from all families except waders and Ibis (family Threskiornithidae) were higher than levels expected to cause selenium toxicosis (10–20 µg/g dw), and all median egg concentrations were above or near 6.0 μg/g dw, which is a conservative threshold value for reproductive impairment. Most knowledge gaps we identified for water, sediment, and biota were interrelated, and the use of integrated approaches to address knowledge gaps can provide greater insight into the drivers behind selenium hazards. Integrated water, sediment, and biota studies could help identify cost-effective management solutions that serve multiple purposes. A comprehensive analysis of the hydrology, biogeochemistry, and food-web processes in wetlands and other habitats can inform predictive models to identify drivers of selenium bioavailability, uptake from the environment and subsequent trophic transfer, ultimately forming the basis for experimental habitat management manipulations to minimize selenium hazards to wildlife. Furthermore, a comprehensive, long-term sampling and analytical laboratory plan would enable comparison of data among different entities that are sampling at the Salton Sea. Such efforts are well suited to help fill knowledge gaps that preclude understanding of selenium hazards and future management options for biota using Salton Sea habitats, including newly formed wetlands throughout the region. All data compiled for this report are available in two U.S. Geological Survey data releases: Groover and others (2022) for water and sediment samples and De La Cruz and others (2022) for biological samples. The data releases include all publicly available data for selenium concentrations in water, sediment, and biological samples collected in and around the Salton Sea, including the Coachella and Imperial Valleys. The data releases also include previously unpublished data.

California↗
USGS2021

Exploring the regional dynamics of U.S. irrigated agriculture from 2002 to 2017

The United States has a geographically mature and stable land use and land cover system including land used as irrigated cropland; however, changes in irrigation land use frequently occur related to various drivers. We applied a consistent methodology at a 250 m spatial resolution across the lower 48 states to map and estimate irrigation dynamics for four map eras (2002, 2007, 2012, and 2017) and over four 5-year mapping intervals. The resulting geospatial maps (called the Moderate Resolution Imaging Spectroradiometer (MODIS) Irrigated Agriculture Dataset or MIrAD-US) involved inputs from county-level irrigated statistics from the U.S. Department of Agriculture, National Agricultural Statistics Service, agricultural land cover from the U.S. Geological Survey National Land Cover Database, and an annual peak vegetation index derived from expedited MODIS satellite imagery. This study investigated regional and periodic patterns in the amount of change in irrigated agriculture and linked gains and losses to proximal causes and consequences. While there was a 7% overall increase in irrigated area from 2002 to 2017, we found surprising variability by region and by 5-year map interval. Irrigation land use dynamics affect the environment, water use, and crop yields. Regionally, we found that the watersheds with the largest irrigation gains (based on percent of area) included the Missouri, Upper Mississippi, and Lower Mississippi watersheds. Conversely, the California and the Texas–Gulf watersheds experienced fairly consistent irrigation losses during these mapping intervals. Various drivers for irrigation dynamics included regional climate fluctuations and drought events, demand for certain crops, government land or water policies, and economic incentives like crop pricing and land values. The MIrAD-US (Version 4) was assessed for accuracy using a variety of existing regionally based reference data. Accuracy ranged between 70% and 95%, depending on the region.

Conterminous United States↗
USGS1993

Distributions of pesticides and organic contaminants between water and suspended sediment, San Francisco Bay, California

Suspended-sediment and water samples were collected from San Francisco Bay in 1991 during low river discharge and after spring rains. All samples were analyzed for organophosphate, carbamate, and organochlorine pesticides; petroleum hydrocarbons; biomarkers; and polynuclear aromatic hydrocarbons. The objectives were to determine the concentrations of these contaminants in water and suspended sediment during two different hydrologic conditions and to determine partition coefficients of the contaminants between water and sediment. Concentrations of hydrophobic contaminants, such as polynuclear aromatic hydrocarbons, varied with location of sample collection, riverine discharge, and tidal cycle. Concentrations of hydrophobic contaminants in suspended sediments were highest during low river discharge but became diluted as agricultural soils entered the bay after spring rains. Polynuclear aromatic hydrocarbons defined as dissolved in the water column were not detected. The concentrations sorbed on suspended sediments were variable and were dependent on sediment transport patterns in the bay. In contrast, the relatively hydrophilic organophosphate pesticides, such as chlorpyrifos and diazinon, has a more uniform concentration in suspended sediment. These pesticides were detected only after spring rains. Most of the measured diazinon, at least 98% for all samples, was in the dissolved phase. Measured partition coefficients for diazinon generally were uniform, which suggests that suspended-sediment concentrations were close to equilibrium with dissolved concentrations. The concentration of diazinon sorbed to suspended sediments, at any given sampling site, was driven primarily by the more abundant solution concentration. The concentrations of diazinon sorbed to suspended sediments, therefore, were independent of the patterns of sediment movement.

California↗
USGS2003

Ecological effects of nitrogen deposition in the western United States

In the western United States vast acreages of land are exposed to low levels of atmospheric nitrogen (N) deposition, with interspersed hotspots of elevated N deposition downwind of large, expanding metropolitan centers or large agricultural operations. Biological response studies in western North America demonstrate that some aquatic and terrestrial plant and microbial communities are significantly altered by N deposition. Greater plant productivity is counterbalanced by biotic community changes and deleterious effects on sensitive organisms (lichens and phytoplankton) that respond to low inputs of N (3 to 8 kilograms N per hectare per year). Streamwater nitrate concentrations are elevated in high-elevation catchments in Colorado and are unusually high in southern California and in some chaparral catchments in the southwestern Sierra Nevada. Chronic N deposition in the West is implicated in increased fire frequency in some areas and habitat alteration for threatened species. Between hotspots, N deposition is too low to cause noticeable effects or has not been studied.

BioScience↗
USGS2001

1857 slip on the San Andreas fault Southeast of Cholame, California

Sieh and Jahns (1984) forecasted that the next moderate Parkfield earthquake might trigger a major earthquake along a fault segment greater than 30 km long southeast of Cholame. Their forecast assumed (1) the slip was 3-4 m in 1857 and characteristic of the segment; (2) a slip rate of 3.4 cm/yr; and (3) full strain release in earthquakes. This study represents an independent measurement of channel offsets, on 1:2400-scale low-sun aerial photographs and by field investigation, to estimate the amount of 1857 slip. Although rainfall is only moderate (30 cm/yr), few reliable offsets of less than 20 m persist here because cattle grazing and agricultural disking of soft sediments on the steep terrain greatly aggravate erosion. Reconstruction of offset geometry and size depends heavily on assumptions made about the post-1857 erosion. Most of the apparent 3- to 4-m offsets of Sieh and Jahns (1984) can also be measured as 2 to 3 m larger with equal or lower uncertainty. The four offsets judged as most reliable range between 5.4 and 6.7 m, and the 11 offsets of medium-high reliability average 5.8 ?? 0.3 m. Data are too sparse and ambiguous to resolve details of the 1857 slip for this segment but it is distinctly less than the 9 m of the Carrizo Plain and more than the 3-4 m previously estimated. Further trenching may refine some measurements, but probability calculations for a Cholame segment earthquake must allow for large observer-dependent uncertainty in the 1857 slip. Although the probability of an M ???7 Cholame event seems less than that suggested by a 3.5-m characteristic earthquake model, it remains among the highest in the state.

Bulletin of the Seismological Society of America↗
USGS2013

The SAFRR tsunami scenario-physical damage in California: Chapter E in The SAFRR (Science Application for Risk Reduction) Tsunami Scenario

his chapter attempts to depict a single realistic outcome of the SAFRR (Science Application for Risk Reduction) tsunami scenario in terms of physical damage to and recovery of various aspects of the built environment in California. As described elsewhere in this report, the tsunami is generated by a hypothetical magnitude 9.1 earthquake seaward of the Alaska Peninsula on the Semidi Sector of the Alaska–Aleutian Subduction Zone, 495 miles southwest of Anchorage, at 11:50 a.m. Pacific Daylight Time (PDT) on Thursday March 27, 2014, and arriving at the California coast between 4:00 and 5:40 p.m. (depending on location) the same day. Although other tsunamis could have locally greater impact, this source represents a substantial threat to the state as a whole. One purpose of this chapter is to help operators and users of coastal assets throughout California to develop emergency plans to respond to a real tsunami. Another is to identify ways that operators or owners of these assets can think through options for reducing damage before a future tsunami. A third is to inform the economic analyses for the SAFRR tsunami scenario. And a fourth is to identify research needs to better understand the possible consequences of a tsunami on these assets. The asset classes considered here include the following: Piers, cargo, buildings, and other assets at the Ports of Los Angeles and Long Beach Large vessels in the Ports of Los Angeles and Long Beach Marinas and small craft Coastal buildings Roads and roadway bridges Rail, railway bridges, and rolling stock Agriculture Fire following tsunami Each asset class is examined in a subsection of this chapter. In each subsection, we generally attempt to offer a historical review of damage. We characterize and quantify the assets exposed to loss and describe the modes of damage that have been observed in past tsunamis or are otherwise deemed likely to occur in the SAFRR tsunami scenario. Where practical, we offer a mathematical model of the damageability of assets exposed to loss. Then, applying the damageability model and the velocity, wave amplitude, and inundation models discussed in other SAFRR chapters we offer a single realistic depiction of damage. Other outcomes are of course possible for this hypothetical event. Where practical we estimate repair costs and estimate the duration required to restore the assets to their pre-tsunami condition. We identify opportunities to enhance the resiliency of the assets, either through making them less vulnerable to damage or able to recover more quickly in spite of the damage. Finally, we identify uncertainties in the modeling where research would improve our understanding of the underlying mechanisms of damage and loss or otherwise improve our ability to estimate the future impacts of tsunamis and inform risk-management decisions for tsunamis. However, it is certain that the kinds of damages discussed here have occurred in past tsunamis, even in developed nations, and in a sufficiently large event, will occur in California. Our uncertainties can operate in either direction, either leading to an overestimate of damage or an underestimate. Therefore, losses in an actual future tsunami could be greater than depicted here. Furthermore this evaluation is not intended to be an exhaustive depiction of what could happen in this or similar tsunamis. Other impacts could occur that are not presented here.

California↗