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Protected areas lacking for many common fluvial fishes of the conterminous USA

Aim To assess the effectiveness of protected areas in two catchment scales (local and network) in conserving regionally common fluvial fishes using modelled species distributions. Location Conterminous United States. Methods A total of 150 species were selected that were geographically widespread, abundant, non‐habitat specialists and native within nine large ecoregions. Species distribution models were developed using boosted regression trees, and modelled distributions were assessed for protection status under two alternatives: lands strictly managed for biodiversity (Highly Restricted Use) and those allowing multiple uses (Multiple Use), with protection target levels (i.e., the amount of protected area required for protection) for local and network catchments being developed from ecoregion‐based urban and agricultural land use thresholds from fish responses. Results Overall, less than 2% of fluvial catchments in the conterminous USA are meeting both local and network catchment protection target levels under the Highly Restricted Use alternative, whereas 16% of catchments met protection levels for the Multiple Use alternative, with protection largely concentrated in the western USA. For common native species distributions within ecoregions, only one species had >10% of streams meeting combined local and network catchment protection target levels under the Highly Restricted Use alternative, whereas 50 distributions (~14% of species distribution models) met this level under the Multiple Use alternative. Main conclusions Even for fishes considered widespread and abundant, protection levels are lacking, particularly when considering only lands that are actively managed for biodiversity. Given the increasing intensification of anthropogenic activities and substantial uncertainty associated with climate change, considering the conservation status for all species, including those currently considered common, is warranted.

Diversity and Distributions

Gradients in Catostomid assemblages along a reservoir cascade

Serial impoundment of major rivers leads to alterations of natural flow dynamics and disrupts longitudinal connectivity. Catostomid fishes (suckers, family Catostomidae) are typically found in riverine or backwater habitats yet are able to persist in impounded river systems. To the detriment of conservation, there is limited information about distribution of catostomid fishes in impounded rivers. We examined the longitudinal distribution of catostomid fishes over 23 reservoirs of the Tennessee River reservoir cascade, encompassing approximately 1600 km. Our goal was to develop a basin-scale perspective to guide conservation efforts. Catostomid species composition and assemblage structure changed longitudinally along the reservoir cascade. Catostomid species biodiversity was greatest in reservoirs lower in the cascade. Assemblage composition shifted from dominance by spotted sucker Minytrema melanops and buffalos Ictiobus spp. in the lower reservoirs to carpsuckers Carpiodes spp. midway through the cascade and redhorses Moxostoma spp. in the upper reservoirs. Most species did not extend the length of the cascade, and some species were rare, found in low numbers and in few reservoirs. The observed gradients in catostomid assemblages suggest the need for basin-scale conservation measures focusing on three broad areas: (1) conservation and management of the up-lake riverine reaches of the lower reservoirs, (2) maintenance of the access to quality habitat in tributaries to the upper reservoirs and (3) reintroductions into currently unoccupied habitat within species' historic distributions

Tennessee River

Spatial conservation planning under uncertainty: Adapting to climate change risks using modern portfolio theory

Climate change and urban growth impact habitats, species, and ecosystem services. To buffer against global change, an established adaptation strategy is designing protected areas to increase representation and complementarity of biodiversity features. Uncertainty regarding the scale and magnitude of landscape change complicates reserve planning and exposes decision makers to risk of failing to meet conservation goals. Conservation planning tends to treat risk as an absolute measure, ignoring the context of the management problem and risk preferences of stakeholders. Application to conservation of risk management theory emphasizes diversification of portfolio of assets, with the goal of reducing the impact of system volatility on investment return. We use principles of Modern Portfolio Theory (MPT), which quantifies risk as the variance and correlation among assets, to formalize diversification as an explicit strategy for managing risk in climate‐driven reserve design. We extend MPT to specify a framework that evaluates multiple conservation objectives, allows decision makers to balance management benefits and risk when preferences are contested or unknown, and includes additional decision options such as parcel divestment when evaluating candidate reserve designs. We apply an efficient search algorithm that optimizes portfolio design for large conservation problems and a game theoretic approach to evaluate portfolio tradeoffs that satisfy decision makers with divergent benefit and risk tolerances, or when a single decision maker cannot resolve their own preferences. Evaluating several risk profiles for a case study in South Carolina, our results suggest that a reserve design may be somewhat robust to differences in risk attitude but that budgets will likely be important determinants of conservation planning strategies, particularly when divestment is considered a viable alternative. We identify a possible fiscal threshold where adequate resources allow protecting a sufficiently diverse portfolio of habitats such that the risk of failing to achieve conservation objectives is considerably lower. For a range of sea‐level rise projections, conversion of habitat to open water (14‐180%) and wetland loss (1‐7%) are unable to be compensated under the current protected network. In contrast, optimal reserve design outcomes are predicted to ameliorate expected losses relative to current and future habitat protected under the existing conservation estate.

South Carolina

Conservation genomics of an endangered montane amphibian reveals low population structure, low genomic diversity and selection pressure from disease

Wildlife diseases are a major global threat to biodiversity. Boreal toads ( Anaxyrus [Bufo] boreas ) are a state-endangered species in the southern Rocky Mountains of Colorado and New Mexico, and a species of concern in Wyoming, largely due to lethal skin infections caused by the amphibian chytrid fungus Batrachochytrium dendrobatidis ( Bd ). We performed conservation and landscape genomic analyses using single nucleotide polymorphisms from double-digest, restriction site-associated DNA sequencing in combination with the development of the first boreal toad (and first North American toad) reference genome to investigate population structure, genomic diversity, landscape connectivity and adaptive divergence. Genomic diversity ( π = 0.00034–0.00040) and effective population sizes ( N e = 8.9–38.4) were low, likely due to post-Pleistocene founder effects and Bd -related population crashes over the last three decades. Population structure was also low, likely due to formerly high connectivity among a higher density of geographically proximate populations. Boreal toad gene flow was facilitated by low precipitation, cold minimum temperatures, less tree canopy, low heat load and less urbanization. We found >8X more putatively adaptive loci related to Bd intensity than to all other environmental factors combined, and evidence for genes under selection related to immune response, heart development and regulation and skin function. These data suggest boreal toads in habitats with Bd have experienced stronger selection pressure from disease than from other, broad-scale environmental variations. These findings can be used by managers to conserve and recover the species through actions including reintroduction and supplementation of populations that have declined due to Bd .

Colorado

Quantifying the conservation status and abundance trends of wildlife communities with detection-nondetection data

Effective conservation requires understanding species' abundance patterns and demographic rates across space and time. Ideally, such knowledge should be available for whole communities, as variation in species' dynamics can elucidate factors leading to biodiversity losses. However, collecting data to simultaneously estimate abundance and demographic rates is often prohibitively time-intensive and expensive for communities of species. We developed a “multi-species dynamic N-occupancy model” to estimate unbiased, community-wide relative abundance and demographic rates. Our model uses detection-nondetection data (e.g., repeated presence-absence surveys) to estimate both species- and community-level parameters as well as the effects of environmental factors. We conducted a simulation study that validated our modeling framework, demonstrating how and when such an approach can be valuable. Using data from a network of camera traps across tropical equatorial Africa, we then used our model to evaluate the statuses and trends of a forest-dwelling antelope community. We estimated relative abundance, rates of recruitment (i.e., reproduction and immigration), and apparent survival probabilities for each species' local population. Our analysis indicated that the antelope community was fairly stable in this region (although 17% of populations [species-park combinations] declined over the study period), with variation in apparent survival linked more closely to differences among national parks rather than individual species' life histories. The multi-species dynamic N-occupancy model requires only detection-nondetection data to evaluate the population dynamics of multiple sympatric species and can thus be a valuable tool for conservation efforts seeking to understand the reasons behind recent biodiversity loss.

Conservation Biology

Assessing biodiversity in Nuevo Leon, Mexico: Are nature reserves the answer?

The Mexican state of Nuevo Leon, located in the northeastern portion of the country, currently has 26 state and three federal nature reserves covering approximately 4.5% of its land area. These reserves were established for a variety of reasons not necessarily related to conservation purposes. In 2000 in response to a growing concern about the lack of organized conservation reserve planning to protect the important biological and physical features of Mexico, the Mexican Commission for Knowledge and Use of Biodiversity proposed 12 new terrestrial reserves for Nuevo Leon. The new reserves, if established, would increase the proportion of protected lands in the state to almost 24% of the state's land area. We compiled a Geographic Information System (GIS) analysis using digital thematic maps of physical and ecological features to examine how well the existing and proposed reserves incorporated the major biological and physical features of the state. The existing reserves are located primarily in regions with elevations > 1,000-1,500 m, on less productive soils, and are dominated by pine and oak forest cover types. As a result, the state's dominant biotic region - low elevation coastal plain with xeric scrub vegetation - is disproportionately under represented in the current reserve system. The new reserves would expand the protection of biophysical resources throughout the state. However, the inclusion of important resources in the low elevation coastal lands would still be limited.

Nuevo Leon

Open-source intelligence for conservation biology

Open-source intelligence (OSINT) evolved in spy agencies but now is rapidly changing many fields of study, from anthropology to zoology. Despite the fact that OSINT occasionally is used in conservation biology, there is little recognition that some tools and frameworks used by conservation professionals are drawn from this well-established field. The history and conceptual foundations of OSINT stem from the intelligence community, although OSINT tools are rapidly being applied in other fields. In conservation biology, OSINT is sometimes used to evaluate wildlife crime, human-wildlife and human-environment interactions, animal behavior, and questions of distribution and abundance. Recognizing the conceptual foundations of the field would allow expansion of conservation biology, not only in the areas noted above, but also, for example, in study of habitat use, habitat change, and animal behavior. This recognition would also provide frameworks for conceptual advancement, especially in terms of data and privacy management. Failure to recognize the underpinnings of OSINT tools in conservation biology harms the field because it limits how research is framed, thought about, and implemented. Likewise, taking an OSINT perspective to conservation problems, rather than simply thinking in terms of big data, can enrich the field, expand science, and increase knowledge and understanding of biology and biodiversity.

Conservation Biology

Spatial conservation planning under uncertainty using modern portfolio theory and nash bargaining solution

In recent years, researchers from interdisciplinary teams involving ecologists, economists and operations re- searchers collaborated to provide decision support tools to address the challenges of preserving biodiversity by optimizing the design of reserves. The goal of this paper is to further advance this area of research and provide new solutions to solve complex Spatial Conservation Planning (SCP) problems under uncertainty that consider risk preferences of decision makers. Our approach employs modern portfolio theory to address uncertainties in SCP problems, and involves two conflicting objectives: maximizing return and minimizing risk. We apply concepts from game theory such as the Nash bargaining solution to directly compute a desirable Pareto-optimal solution for the proposed bi-objective optimization formulation in natural resource management problems. We demonstrate with numerical examples that by directly computing a Nash bar- gaining solution, a Binary Quadratically Constrained Quadratic Program (BQCQP) can be solved. We show that our approach (implementable with commercial solvers such as CPLEX) can effectively solve the proposed BQCQP for much larger problems than previous approaches published in the ecological literature. Optimal solutions for problems with less than 400 parcels can be computed within a minute. Near optimal solutions (within at most 0.2% gap from an optimal solution) for high-dimensional problems involving up to 800 parcels can be computed within 8 hours on a standard computer. We have presented a new approach to solve SCP optimization problems while considering uncertainty and risk tolerance of decision makers. Our new approach expands considerably the applicability of such SCP optimization methods to address real conservation problems.

Ecological Modelling

Limitations of captive breeding in endangered species recovery

The use of captive breeding in species recovery has grown enormously in recent years, but without a concurrent growth in appreciation of its limitations. Problems with (1) establishing self-sufficient captive populations, (2) poor success in reintroductions, (3) high costs, (4) domestication, (5) preemption of other recovery techniques, (6) disease outbreaks, and (7) maintaining administrative continuity have all been significant. The technique has often been invoked prematurely and should not normally be employed before a careful field evaluation of costs and benefits of all conservation alternatives has been accomplished and a determination made that captive breeding is essential for species survival. Merely demonstrating that a species’ population is declining or has fallen below what may be a minimum viable size does not constitute enough analysis to justify captive breeding as a recovery measure. Captive breeding should be viewed as a last resort in species recovery and not a prophylactic or long-term solution because of the inexorable genetic and phenotypic changes that occur in captive environments. Captive breeding can play a crucial role in recovery of some species for which effective alternatives are unavailable in the short term. However, it should not displace habitat and ecosystem protection nor should it be invoked in the absence of comprehensive efforts to maintain or restore populations in wild habitats. Zoological institutions with captive breeding programs should operate under carefully defined conditions of disease prevention and genetic/behavioral management. More important, these institutions should help preserve biodiversity through their capacities for public education, professional training, research, and support of in situ conservation efforts.

Conservation Biology

A hidden view of wildlife conservation: How camera traps aid science, research and management

Florida panthers are among the world’s most endangered — and elusive — animals. For approximately four decades, scientists have been researching this small population of panthers that inhabit the dense forests and swamps of south Florida. Because of their wide habitat range along with an absence of clear visual features, these animals are difficult to detect and identify. In 2013, however, researchers released a study that used camera trap images collected between 2005 and 2007 to generate the first statistically reliable density estimates for the remaining population of this subspecies. Camera traps — remotely activated cameras with infrared sensors — first gained measurable popularity in wildlife conservation in the early 1990s. Today, they’re used for a variety of activities, from species-specific research to broad-scale inventory or monitoring programs that, in some cases, attempt to detect biodiversity across vast landscapes. As this modern tool continues to evolve, it’s worth examining its uses and benefits for wildlife management and conservation.

The Wildlife Professional

Foundational science in flight—USGS bird programs support conservation, culture, and a thriving U.S. economy

Birds are vital to our economy, ecosystems, and cultural heritage. Investing in bird conservation benefits communities, businesses, and working lands while reinforcing our nation’s legacy of stewardship and biodiversity. By valuing birds, we ensure a richer, healthier, and more vibrant future for all Americans. The USGS leads two national bird monitoring programs Thriving bird populations contribute over $ 100 billion in related purchases to the U.S. economy annually, helping to support 1.4 million jobs and $ 90 billion in labor-related income. Across our nation, Federal and State wildlife agencies, Flyway Councils, non-governmental organizations, and more consider data from the U.S. Geological Survey’s (USGS) Bird Banding Laboratory (BBL) and Breeding Bird Survey (BBS) to be critical to meeting their mandates to set healthy harvest levels and in identifying species of conservation need. However, without stable and sufficient resources for the BBL and BBS, the capacity to monitor and address the rapidly evolving needs of migratory bird populations is at risk, jeopardizing the foundation of collaborative conservation efforts across North America.

Fact Sheet

Environmental DNA

The widespread adoption of environmental DNA (eDNA) detection tools for biodiversity monitoring has led to the need for universal data standards to inform principled eDNA data applications. Improvements in understanding the meaning and possible uncertainty of eDNA data can minimize erroneous conclusions, increase confidence in eDNA data, and maximize conservation outcomes. -Environmental DNA (eDNA) is the genetic material left by organisms in the environment. -eDNA is increasingly being used to detect the presence of species and assess biodiversity, but broad-scale best practices are still being developed. -This affects the quality, accessibility, and usefulness of data. -Non-invasive eDNA sampling can complement or enhance conventional approaches, as it can be a highly sensitive, rapid, and cost-effective tool for biodiversity monitoring. -Creating unified eDNA data best practices and developing DNA reference libraries will ensure eDNA detection methods are applied consistently to accurately inform conservation and wildlife management.

Report

A new inventory and conservation assessment of United States islands

To support conservation-focused research and management we developed a new 30-m resolution polygon data layer of the nonlacustrine and nonriverine islands of the United States, with associated attributes describing key physical and conservation geography characteristics. Islands were grouped into a three-tiered hierarchy of island regions (twelve), island provinces (twenty-eight), and individual islands (19,023). Islands were classified as either continental or oceanic based on their physiographic position relative to the North America continental shelf, and estuarine versus nonestuarine depending on their location within or external to estuaries. For each island we assessed the diversity of terrestrial and coastal ecosystems, the number of threatened and endangered (T&E) species listed under the Endangered Species Act, the number of T&E species critical habitats, the number of migratory bird species listed under the Migratory Bird Treaty Act, the number of Key Biodiversity Areas, and the number of and management responsibility for protected areas. We conclude that the conservation importance of islands is disproportionate to their total area as, for example, islands contain 52 percent of the T&E species yet their total area is only 2 percent of the area of the continental mainland. Similarly, of the global total of 431 World Terrestrial Ecosystems, 201 (47 percent) occur on U.S. islands compared with 286 (66 percent) that occur on the U.S. continental mainland.

Annals of the American Association of Geographers

Preparing wildlife for climate change: How far have we come?

Global biodiversity is in unprecedented decline and on-the-ground solutions are imperative for conservation. Although there is a large volume of evidence related to climate change effects on wildlife, research on climate adaptation strategies is lagging. To assess the current state of knowledge in climate adaptation, we conducted a comprehensive literature review and evaluated 1,346 peer-reviewed publications for management recommendations designed to address the consequences of climate change on wildlife populations. From 509 publications, we identified 2,306 recommendations and employed both qualitative and quantitative methods for data analysis. Although we found an increase in the volume and diversity of recommendations since 2007, a focus on protected areas (26%, 596 of 2,306 recommendations) and the non-reserve matrix (12%, 276 of 2,306 recommendations) remained prominent in the climate adaptation literature. Common concepts include protected areas, invasive species, ecosystem services, adaptive management, stepping stones, assisted migration, and conservation easements. In contrast, only 1% of recommendations focused on reproduction ( n = 26), survival ( n = 14), disease ( n = 26), or human-wildlife conflict ( n = 24). Few recommendations reflected the potential for local-scale management interventions. We demonstrate limited advancement in preparing natural resource managers in climate adaptation at local, management-relevant scales. Additional research is needed to identify and evaluate climate adaptation strategies aimed at reducing the vulnerability of wildlife to contemporary climate change. © 2020 The Wildlife Society.

Journal of Wildlife Management

Temporal latitudinal-gradient dynamics and tropical instability of deep-sea species diversity

A benthic microfaunal record from the equatorial Atlantic Ocean over the past four glacial-interglacial cycles was investigated to understand temporal dynamics of deep-sea latitudinal species diversity gradients (LSDGs). The results demonstrate unexpected instability and high amplitude fluctuations of species diversity in the tropical deep ocean that are correlated with orbital-scale oscillations in global climate: Species diversity is low during glacial and high during interglacial periods. This implies that climate severely influences deep-sea diversity, even at tropical latitudes, and that deep-sea LSDGs, while generally present for the last 36 million years, were weakened or absent during glacial periods. Temporally dynamic LSDGs and unstable tropical diversity require reconsideration of current ecological hypotheses about the generation and maintenance of biodiversity as they apply to the deep sea, and underscore the potential vulnerability and conservation importance of tropical deep-sea ecosystems.

Proceedings of the National Academy of Sciences of

Stream permanence is related to crayfish occupancy and abundance in the Ozark Highlands, USA

Crayfish use of intermittent streams is especially important to understand in the face of global climate change. We examined the influence of stream permanence and local habitat on crayfish occupancy and species densities in the Ozark Highlands, USA. We sampled in June and July 2014 and 2015. We used a quantitative kick–seine method to sample crayfish presence and abundance at 20 stream sites with 32 surveys/site in the Upper White River drainage, and we measured associated local environmental variables each year. We modeled site occupancy and detection probabilities with the software PRESENCE, and we used multiple linear regressions to identify relationships between crayfish species densities and environmental variables. Occupancy of all crayfish species was related to stream permanence. Faxonius meeki was found exclusively in intermittent streams, whereas Faxonius neglectus and Faxonius luteus had higher occupancy and detection probability in permanent than in intermittent streams, and Faxonius williamsi was associated with intermittent streams. Estimates of detection probability ranged from 0.56 to 1, which is high relative to values found by other investigators. With the exception of F. williamsi , species densities were largely related to stream permanence rather than local habitat. Species densities did not differ by year, but total crayfish densities were significantly lower in 2015 than 2014. Increased precipitation and discharge in 2015 probably led to the lower crayfish densities observed during this year. Our study demonstrates that crayfish distribution and abundance is strongly influenced by stream permanence. Some species, including those of conservation concern (i.e., F. williamsi , F. meeki ), appear dependent on intermittent streams, and conservation efforts should include consideration of intermittent streams as an important component of freshwater biodiversity.

Arkansas, Missouri

Occurrence, resource use, and demography of the common raven in North America: A research synthesis

We reviewed the scientific literature to inventory existing studies of common raven ( Corvus corax ; raven) ecology in western North America. We conducted an intial literature review between June 2015 and March 2018. Prior to completing our review, we revisited the published literature for any additional relevant studies in July 2021. Our goal was to identify knowledge gaps and to synthesize the current understanding of environmental features that may support raven populations that pose general threats to biodiversity and sensitive species in particular. We focused our review on studies with direct conservation applications related to 3 processes of raven ecology: occurrence, resource use, and demography. We identified covariates that researchers associated with these processes of raven ecology, and we also quantified the geographic distribution of studies. Our review identified 54 studies, with an increasing number of studies published per decade and a geographic bias characterized by more studies conducted in the Mojave and Columbia Plateau ecoregions than elsewhere. Most studies (44) reported on a single ecological process, but 10 studies reported on multiple ecological processes. Results related to raven occurrence appeared 31 times; demographic results appeared 21 times; and resource use was reported 17 times. We also identified 13 explanatory covariates regularly invoked to explain variation in raven ecological processes. Greater attention was given to covariates including vegetation land cover, human settlement, recreation, and linear rights-of-ways than were used to explain variation in ecological processes. Most demographic studies investigated raven reproduction exclusively, but a small number of studies considered raven survival exclusively or in combination with reproduction. Along with a detailed summary of individual studies provided as an appendix, we intend for our findings to serve as a reference and to help identify future research priorities.

Human–Wildlife Interactions

Quantifying avian resilience to habitat change to support conservation decision-making

Habitat loss and degradation are two of the main drivers of contemporary avian population declines. Wildlife managers are increasingly advocating for tools that provide decision support to set priorities for restoration or conservation efficiently. We demonstrate how to derive two species-specific management and resilience metrics: the greatest management impact point (GMIP) and the ecological resilience threshold (RT). The GMIP indicates the amount of environmental change in a landscape where habitat improvements are expected to have the greatest impact on species’ occurrence. The RT represents the amount of environmental change in a landscape that a species can tolerate before the steepest change in occupancy is expected to begin. We estimate species-specific metrics using the amount of uncharacteristic exotic vegetation as an index of environmental change, and demonstrate how multispecies patterns may suggest potential management strategies. We estimated occupancy models using 5 years of multispecies avian detection data from the Integrated Monitoring in Bird Conservation Regions program in the State of Utah, USA (hereafter, Utah). Based on the estimated relationship between species’ occupancy and amounts of uncharacteristic exotic vegetation, we derive RT and GMIP scores for 61 species breeding in Utah. We found wide interspecific variation in resilience to amounts of exotic vegetation, with species generally clustering at extreme values. Our results demonstrate that birds in Utah appear more resilient to amounts of uncharacteristic exotic vegetation at coarser spatial resolution, showing greater variance and lower average RTs at finer spatial resolution. Species that are not fully resilient to the range of uncharacteristic exotic vegetation observed in this study are expected to respond most strongly, on average, to management actions in landscapes with high levels of exotic vegetation; however, early detection and rapid response is likely the most effective strategy. Quantified across many species, these metrics can be used to identify and prioritize landscapes where current environmental conditions could be maintained to avoid the greatest species’ declines, or which maximize expected biodiversity returns on investment in environmental restoration. Managers can consider either focal species’ resilience for tailored conservation planning or summarize species resilience to create efficient management plans that maximize outcomes for multiple species.

Utah