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U.S. Geological Survey Karst Interest Group proceedings, Nashville, Tennessee, October 22-24, 2024

Karst hydrogeologic systems represent challenging and unique conditions to scientists studying groundwater flow and contaminant transport. Karst terrains are characterized by distinct and beautiful landscapes, caverns, and springs, and many of the exceptional karst areas are designated as national or state parks. The range and complexity of landforms and groundwater flow systems associated with karst terrains are enormous, perhaps more than any other aquifer type. The U.S. Geological Survey (USGS) Karst Interest Group (KIG), formed in 2000, is a loosely knit, grassroots organization of USGS and non-USGS scientists and researchers devoted to fostering better communication among scientists working on, or interested in, karst aquifers. The primary mission of the KIG is to encourage and support interdisciplinary collaboration and technology transfer among scientists working in karst areas. To accomplish its mission, the KIG has organized a series of workshops. To date (2024), nine KIG workshops, including the workshop documented in this report, have been held. The abstracts and extended abstracts provide a snapshot in time of past and current karst related studies. The USGS Water Availability and Use Science Program funded the workshop and proceedings. The planning committee for the ninth workshop includes Thomas D. Byl (USGS and Tennessee State University), Allan K. Clark (USGS), Laura M. DeMott (USGS), Eve L. Kuniansky (USGS, Emeritus), Benjamin V. Miller (USGS), and Lawrence E. Spangler (USGS, Emeritus). The workshop proceedings are edited by Eve L. Kuniansky and Lawrence E. Spangler. The field trip guide was produced by Benjamin V. Miller and Brian Ham (Tennessee Department of Environment and Conservation) and included in the proceedings from the KIG’s 2021 virtual workshop to be used on the optional field trip held on Thursday, October 24, 2024.

Open-File Report

Assessing the solubilities and reaction kinetics of aluminous minerals in soils

The use of chemical thermodynamics and reaction kinetics is necessary to quantitatively model the transformation of aluminous minerals and their dissolved constituents in soils and other geochemical systems. Soils are thermodynamically open systems subject to atmospheric and biological forces and do not attain overall thermodynamic equilibrium with respect to either mass or time. However, local or partial equilibrium conditions may persist for particular minerals and their dissolved constituents. Igneous and metamorphic primary minerals break down chemically to yield disordered gels or colloids and constituent ions, which can then reorganize or precipitate to form more stable hydrous oxides, silicates, carbonates or other mineral species. Naturally-occurring iron and aluminum hydrous oxides and kaolin clays, abundant in highly weathered soils, are commonly believed to be the ultimate, stable end products of weathering reactions, but usually are thermodynamically metastable with respect to more perfectly ordered, synthetic specimens. Thermodynamic stability is no guaranty of mineral persistence; with sufficient time, even the most perfectly crystallized, stable mineral will yield to the solubilizing assault of undersaturated surface waters. All of the dissolution and precipitation reactions of soil minerals are driven by energy differences in the thermodynamic stabilities of reactants and products, and the velocities (or kinetics) of such reactions are regulated by variables of the hydrogeochemical environment.

Book chapter

Progressive oxidation of pyrite in five bituminous coal samples: An As XANES and 57 Fe Mössbauer spectroscopic study

Naturally occurring pyrite commonly contains minor substituted metals and metalloids (As, Se, Hg, Cu, Ni, etc.) that can be released to the environment as a result of its weathering. Arsenic, often the most abundant minor constituent in pyrite, is a sensitive monitor of progressive pyrite oxidation in coal. To test the effect of pyrite composition and environmental parameters on the rate and extent of pyrite oxidation in coal, splits of five bituminous coal samples having differing amounts of pyrite and extents of As substitution in the pyrite, were exposed to a range of simulated weathering conditions over a period of 17 months. Samples investigated include a Springfield coal from Indiana (whole coal pyritic S = 2.13 wt.%; As in pyrite = detection limit (d.l.) to 0.06 wt.%), two Pittsburgh coal samples from West Virginia (pyritic S = 1.32–1.58 wt.%; As in pyrite = d.l. to 0.34 wt.%), and two samples from the Warrior Basin, Alabama (pyritic S = 0.26–0.27 wt.%; As in pyrite = d.l. to 2.72 wt.%). Samples were collected from active mine faces, and expected differences in the concentration of As in pyrite were confirmed by electron microprobe analysis. Experimental weathering conditions in test chambers were maintained as follows: (1) dry Ar atmosphere; (2) dry O 2 atmosphere; (3) room atmosphere (relative humidity ∼20–60%); and (4) room atmosphere with samples wetted periodically with double-distilled water. Sample splits were removed after one month, nine months, and 17 months to monitor the extent of As and Fe oxidation using As X-ray absorption near-edge structure (XANES) spectroscopy and 57 Fe Mössbauer spectroscopy, respectively. Arsenic XANES spectroscopy shows progressive oxidation of pyritic As to arsenate, with wetted samples showing the most rapid oxidation. 57 Fe Mössbauer spectroscopy also shows a much greater proportion of Fe 3+ forms (jarosite, Fe 3+ sulfate, FeOOH) for samples stored under wet conditions, but much less difference among samples stored under dry conditions in different atmospheres. The air-wet experiments show evidence of pyrite re-precipitation from soluble ferric sulfates, with As retention in the jarosite phase. Extents of As and Fe oxidation were similar for samples having differing As substitution in pyrite, suggesting that environmental conditions outweigh the composition and amount of pyrite as factors influencing the oxidation rate of Fe sulfides in coal.

Applied Geochemistry

A Framework for Long-term Ecological Monitoring in Olympic National Park: Prototype for the Coniferous Forest Biome

This report is the result of a five-year collaboration between scientists of the U.S. Geological Survey Forest and Rangeland Ecosystem Science Center, Olympic Field Station, and the natural resources staff of Olympic National Park to develop a comprehensive strategy for monitoring natural resources of Olympic National Park. Olympic National Park is the National Park Serviceʼs prototype monitoring park, representing parks in the coniferous forest biome. Under the umbrella of the National Park Serviceʼs prototype parks program, U.S. Geological Survey and Olympic National Park staffs are obligated to: develop strategies and designs for monitoring the long-term health and integrity of national park ecosystems with a significant coniferous forest component. design exportable monitoring protocols that can be used by other parks within the coniferous forest biome (i.e., parks having similar environments), and create a demonstration area and ʻcenter of excellenceʼ for assisting other parks in developing ecological monitoring programs. Olympic National Park is part of the North Coast and Cascades Network, a network of seven Pacific Northwestern park units created recently by the National Park Serviceʼs Inventory and Monitoring Program to extend the monitoring of ʻvital signsʼ of park health to all National Park Service units. It is our intent and hope that the monitoring strategies and conceptual models described here will meet the overall purpose of the prototype parks monitoring program in proving useful not only to Olympic National Park, but also to parks within the North Coast and Cascades Network and elsewhere. Part I contains the conceptual design and sampling framework for the prototype long-term monitoring program in Olympic National Park. In this section, we explore key elements of monitoring design that help to ensure the spatial, ecological, and temporal integration of monitoring program elements and discuss approaches used to design an ecosystem-based monitoring program. Basic monitoring components include ecosystem drivers, (e.g., climate, atmospheric inputs, human pressures), indicators of ecosystem integrity (e.g., biogeochemical indicators), known threats (e.g., impacts of introduced mountain goats), and focal or ʻkeyʼ species (e.g., rare or listed species, Roosevelt elk). Monitoring system drivers and key indicators of ecosystem integrity provide the long-term baseline needed to judge what constitutes ʻunnaturalʼ variation in park resources and provide the earliest possible warning of unacceptable change. Monitoring effects of known threats and the status of focal species will provide information useful to park managers for dealing with current park issues. In Part I we describe the process of identifying potential indicators of ecological condition and present conceptual models of park ecosystems. In addition we report results from several workshops held in conjunction with Olympic National Park aimed at identifying potential indicators of change in the parkʼs ecosystem. First, we describe the responses of Olympic National Park staff to the generic question, “What is the most important resource to monitor in Olympic National Park and why?” followed by the responses from resource and land managers from areas adjoining the park. We also catalogue the responses of various expert groups that we asked to help identify the most appropriate system drivers and indicators of change in the Olympic National Park ecosystems. Results of the workshops provided the justification for selecting basic indicators of ecosystem integrity, effects of current threats to park resources, and focal resources of parks to detect both the currently evident and unforeseeable changes in park resources. We conclude Part I by exploring several generic statistical issues relevant to monitoring natural resources in Olympic National Park. Specifically we discuss trade-offs associated with sampling extensively versus sampling intensively in smaller geographic regions and describe a conceptual framework to guide development of a generic sampling frame for monitoring. We recommend partitioning Olympic National Park into three zones of decreasing accessibility to maximize monitoring efficiency. We present examples of how the generic sampling frame could be used to help ensure spatial integration of individual monitoring projects. Part II of the report is a record of the potential monitoring questions and indicators identified to date in our workshops. The presentation is organized according to the major system drivers, components, and processes identified in the intermediate-level working model of the Olympic National Park ecosystem. For each component of the park system, we develop the need and justification for monitoring, articulate park management issues, and describe key resources and ecosystem functions. We also present a pictorial conceptual model of each ecological subsystem, identify monitoring questions, and list potential indicators for each monitoring question. We conclude each section by identifying linkages of indicators to other ecological subsystems in our general ecosystem model, spatial and temporal contexts for monitoring (where and how often to monitor), and research and development needs. Part II represents the most current detailed listing of potential indicators—the material for subsequent discussions of monitoring priorities and selection of indicators for protocol development. Collectively, the sections of this report contain a comprehensive list of the important monitoring questions and potential indicators as well as recommendations for designing an integrated monitoring program. In Part I, Chapter 6 we provide recommendations on how to proceed with the important next steps in the design process: establishing priorities among the many possible monitoring questions and indicators, and beginning to research and design effective long-term monitoring protocols.

Information and Technology Report

Investigation of submarine groundwater discharge along the tidal reach of the Caloosahatchee River, southwest Florida

The tidal reach of the Caloosahatchee River is an estuarine habitat that supports a diverse assemblage of biota including aquatic vegetation, shellfish, and finfish. The system has been highly modified by anthropogenic activity over the last 150 years (South Florida Water Management District (SFWMD), 2009). For example, the river was channelized and connected to Lake Okeechobee in 1881 (via canal C-43). Subsequently, three control structures (spillway and locks) were installed for flood protection (S-77 and S-78 in the 1930s) and for saltwater-intrusion prevention (S-79, W.P. Franklin Lock and Dam in 1966). The emplacement of these structures and their impact to natural water flow have been blamed for water-quality problems downstream within the estuary (Flaig and Capece, 1998; SFWMD, 2009). Doering and Chamberlain (1999) found that the operation of these control structures caused large and often rapid variations in salinity during various times of the year. Variable salinities could have deleterious impacts on the health of organisms in the Caloosahatchee River estuary. Flow restriction along the Caloosahatchee has also been linked to surface-water eutrophication problems (Doering and Chamberlain, 1999; SFWMD, 2009) and bottom-sediment contamination (Fernandez and others, 1999). Sources of nutrients (nitrogen and phosphorous) that cause eutrophication are primarily from residential sources and agriculture, though wastewater-treatment-plant discharges can also play a major role (SFWMD, 2009). The pathway for many of these nutrients is by land runoff and direct discharge from stormwater drains. An often overlooked source of nutrients and other chemical constituents is from submarine groundwater discharge (SGD). SGD can be either a diffuse or point source (for example, submarine springs) of nutrients and other chemical constituents to coastal waters (Valiela and others, 1990; Swarzenski and others, 2001; 2006; 2007; 2008). SGD can be composed of either fresh or marine water or various mixed ratios of fresh and marine water (Martin and others, 2007). In coastal areas where water-table elevations (hydraulic gradients) are steep, such as in Hood Canal, Washington (Swarzenski and others, 2007; Simonds and others, 2008), groundwater entering the coastal marine waters can be fresh (~1-4 parts per thousand, ppt). SGD in coastal locations that have low relief (low hydraulic gradients) such as the study area or other locations in Florida are typically driven by tidal pumping (Reich and others, 2002; 2008; Swarzenski and others, 2008), and water advecting into surface water is composed of recirculated marine water mixed with either fresh or brackish groundwaters. The importance of SGD in the delivery of nutrients and trace elements to coastal environments has been shown to be both beneficial and deleterious to ecosystem health (Valiela and others, 1990). The logical step in studying SGD is to map areas where SGD occurs. Methods such as continuous surface-water radon-222 ( 222 Rn) mapping and electrical resistivity (continuous resistivity profiles, CRP) have been developed and used to identify potential SGD sites (Dulaiova and others, 2005; Swarzenski and others 2004; 2006; 2007; 2008; Reich and others, 2008). CRP data record subsurface, bulk-resistivity measurements to depths up to 25 meters (m). The bulk resistivity can be representative of changes in porewater salinity or in lithology (Reich and others, 2008; Swarzenski and others, 2008). Radon-222 (half-life = 3.28 days) is a natural tracer of groundwater, because sediments and rocks, containing uranium-bearing materials such as limestone and phosphatic material, continually produce 222 Rn. Rn-222 (also referred to simply as radon) is an ideal tracer, because there is a constant source. Since radon is a gas, 222 Rn does not build up in the surface water but rather evades directly to the atmosphere (Burnett and Dulaiova, 2003; Burnett and others, 2003; Dulaiova and Burnett, 2006).

Florida

Recent paleorecords document rising mercury contamination in Lake Tanganyika

Recent Lake Tanganyika Hg deposition records were derived using 14 C and excess 210 Pb geochronometers in sediment cores collected from two contrasting depositional environments: the Kalya Platform, located mid-lake and more removed from watershed impacts, and the Nyasanga/Kahama River delta region, located close to the lake’s shoreline north of Kigoma. At the Kalya Platform area, pre-industrial Hg concentrations are 23 ± 0.2 ng/g, increasing to 74 ng/g in modern surface sediment, and the Hg accumulation rate has increased from 1.0 to 7.2 μg/m 2 /a from pre-industrial to present, which overall represents a 6-fold increase in Hg concentration and accumulation. At the Nyasanga/Kahama delta region, pre-industrial Hg concentrations are 20 ± 3 ng/g, increasing to 46 ng/g in surface sediment. Mercury accumulation rate has increased from 30 to 70 μg/m 2 /a at this site, representing a 2–3-fold increase in Hg concentration and accumulation. There is a lack of correlation between charcoal abundance and Hg accumulation rate in the sediment cores, demonstrating that local biomass burning has little relationship with the observed Hg concentration or Hg accumulation rates. Examined using a sediment focusing-corrected mass accumulation rate approach, the cores have similar anthropogenic atmospheric Hg deposition profiles, suggesting that after accounting for background sediment concentrations the source of accumulating Hg is predominantly atmospheric in origin. In summary, the data document an increase of Hg flux to the Lake Tanganyika ecosystem that is consistent with increasing watershed sediment delivery with background-level Hg contamination, and regional as well as global increases in atmospheric Hg deposition.

Tanzania, the Democratic Republic of the Congo , B

Water quality and mass transport in four watersheds in eastern Puerto Rico: Chapter E in Water quality and landscape processes of four watersheds in eastern Puerto Rico

Water quality of four small watersheds in eastern Puerto Rico has been monitored since 1991 as part of the U.S. Geological Survey's Water, Energy, and Biogeochemical Budgets program. These watersheds represent a montane, humid-tropical environment and differ in geology and land cover. Two watersheds are located on granitic rocks, and two are located on volcaniclastic rock. For each bedrock type, one watershed is covered with mature rainforest in the Luquillo Mountains, and the other watershed is undergoing reforestation after being affected by agricultural practices typical of eastern Puerto Rico. A subwatershed of the Icacos watershed, the Guabá, was also monitored to examine scaling effects. The water quality of the rivers draining forest, in the Icacos and Guabá (granitic watersheds) and Mameyes (a volcaniclastic watershed), show little contamination by human activities. The water is well oxygenated and has a nearly neutral pH, and nutrient concentrations are low. Concentrations of nutrients in the disturbed watersheds, the Cayaguás (granitic rock) and Canóvanas (volcaniclastic rock), are greater than in the forested watersheds, indicating some inputs from human activities. High in-stream productivity in the Canóvanas watershed leads to occasional oxygen and calcite supersaturation and carbon dioxide undersaturation. Suspended sediment concentrations in all watersheds are low, except during major storms. Most dissolved constituents derived from bedrock weathering or atmospheric deposition (including sodium, magnesium, calcium, silica, alkalinity, and chloride) decrease in concentration with increasing runoff, reflecting dilution from increased proportions of overland or near-surface flow. Strongly bioactive constituents (dissolved organic carbon, potassium, nitrate, ammonium ion, and phosphate) commonly display increasing concentration with increasing runoff, regardless of their ultimate origin (bedrock or atmosphere). The concentrations of many of the bioactive constituents eventually decrease at runoff rates greater than 3 to 10 millimeters per hour, presumably reflecting an increased relative contribution from overland flow. Sulfate behaves like the nonbioactive constituents in the Canóvanas, Cayaguás, and Mameyes watersheds but like a bioactive constituent in the Icacos and Guabá watersheds. Storms resulted in several anomalous sample compositions. Runoff waters from a number of storms - mostly hurricanes, but also other storms - have exceptionally high chloride concentrations, presumably resulting from windborne seasalt from the ocean, and low nitrate concentrations, reflecting a dominance of maritime air masses contributing moisture to the storms. High-potassium samples, without high chloride, are also associated with some smaller storms that followed Hurricane Georges in 1998; they are likely related to the breakdown of fallen vegetation. Finally, occasional low-silica events are observed in the Icacos and Guabá watersheds in the years prior to Hurricane Georges, but not after; this difference may be related to a change in hydrologic flow paths.

Professional Paper

Seabed maps showing topography, ruggedness, backscatter intensity, sediment mobility, and the distribution of geologic substrates in Quadrangle 6 of the Stellwagen Bank National Marine Sanctuary Region offshore of Boston, Massachusetts

The U.S. Geological Survey (USGS), in cooperation with the National Oceanic and Atmospheric Administration's National Marine Sanctuary Program, has conducted seabed mapping and related research in the Stellwagen Bank National Marine Sanctuary (SBNMS) region since 1993. The area is approximately 3,700 square kilometers (km 2 ) and is subdivided into 18 quadrangles. Seven maps, at a scale of 1:25,000, of quadrangle 6 (211 km 2 ) depict seabed topography, backscatter, ruggedness, geology, substrate mobility, mud content, and areas dominated by fine-grained or coarse-grained sand. Interpretations of bathymetric and seabed backscatter imagery, photographs, video, and grain-size analyses were used to create the geology-based maps. In all, data from 420 stations were analyzed, including sediment samples from 325 locations. The seabed geology map shows the distribution of 10 substrate types ranging from boulder ridges to immobile, muddy sand to mobile, rippled sand. Mapped substrate types are defined on the basis of sediment grain-size composition, surface morphology, sediment layering, the mobility or immobility of substrate surfaces, and water depth range. This map series is intended to portray the major geological elements (substrates, topographic features, processes) of environments within quadrangle 6. Additionally, these maps will be the basis for the study of the ecological requirements of invertebrate and vertebrate species that utilize these substrates and guide seabed management in the region.

Massachusetts

Measuring and computing natural ground-water recharge at sites in south-central Kansas

To measure the natural groundwater recharge process, two sites in south-central Kansas were instrumented with sensors and data microloggers. The atmospheric-boundary layer and the unsaturated and saturated soil zones were monitored as a single regime. Direct observations also were used to evaluate the measurements. Atmospheric sensors included an anemometer, a tipping-bucket rain gage, an air-temperature thermistor, a relative-humidity probe, a net radiometer, and a barometric-pressure transducer. Sensors in the unsaturated zone consisted of soil-temperature thermocouples, tensiometers coupled with pressure transducers and dial gages, gypsum blocks, and a neutron-moisture probe. The saturated-zone sensors consisted of a water-level pressure transducer, a conventional float gage connected to a variable potentiometer, soil thermocouples, and a number of multiple-depth piezometers. Evaluation of the operation of these sensors and recorders indicates that certain types of equipment, such as pressure transducers, are very sensitive to environmental conditions. A number of suggestions aimed at improving instrumentation of recharge investigations are outlined. Precipitation and evapotranspiration data, taken together with soil moisture profiles and storage changes, water fluxes in the unsaturated zone and hydraulic gradients in the saturated zone at various depths, soil temperature, water table hydrographs, and water level changes in nearby wells, describe the recharge process. Although the two instrumented sites are located in sand-dune environments in area characterized by a shallow water table and a sub-humid continental climate, a significant difference was observed in the estimated total recharge. The estimates ranged from less than 2.5 mm at the Zenith site to approximately 154 mm at the Burrton site from February to June 1983. The principal reasons that the Burrton site had more recharge than the Zenith site were more precipitation, less evapotranspiration, and a shallower depth to the water table. Effective recharge took place only during late winter and spring. No summer or fall recharge was observed at either site during the observation period of this study. (Author 's abstract)

Water-Resources Investigations Report

Hydrology and Ecology of Freshwater Wetlands in Central Florida - A Primer

Freshwater wetlands are an integral part of central Florida, where thousands are distributed across the landscape. However, their relatively small size and vast numbers challenge efforts to characterize them collectively as a statewide water resource. Wetlands are a dominant landscape feature in Florida; in 1996, an estimated 11.4 million acres of wetlands occupied 29 percent of the area of the State. Wetlands represent a greater percentage of the land surface in Florida than in any other state in the conterminous United States. Statewide, 90 percent of the total wetland area is freshwater wetlands and 10 percent is coastal wetlands. About 55 percent of the freshwater wetlands in Florida are forested, 25 percent are marshes and emergent wetlands, 18 percent are scrub-shrub wetlands, and the remaining 2 percent are freshwater ponds. Freshwater wetlands are distributed differently in central Florida than in other parts of the State. In the panhandle and in northern Florida, there are fewer isolated wetlands than in the central and southern parts of the State, and few of those wetlands are affected by activities such as groundwater withdrawals. In southern Florida, the vast wetlands of the Everglades and the Big Cypress Swamp blanket the landscape and form contiguous shallow expanses of water, which often exhibit slow but continuous flow toward the southwestern coast. In contrast, the wetlands of central Florida are relatively small, numerous, mostly isolated, and widely distributed. In many places, wetlands are flanked by uplands, generating a mosaic of contrasting environments-unique wildlife habitat often adjacent to dense human development. As the population of central Florida increases, the number of residents living near wetlands also increases. Living in close proximity to wetlands provides many Floridians with an increased awareness of nature and an opportunity to examine the relationship between people and wetlands. Specifically, these residents can observe how wetlands are affected by human activities. Freshwater wetlands are unique and complex ecosystems defined by characteristic properties. Wetlands usually have standing water during at least part of the year, although water depths can vary from a few inches to as much as several feet from one wetland to another. The hydrologic behavior of wetlands is influenced by drainage basin characteristics, as well as by natural variations in climate. Wetlands in central Florida (especially forested wetlands) often have acidic waters that are darkly stained from organic substances released by decomposing leaves and other plant material. Wetlands are characterized by biogeochemical cycles in which vital elements such as carbon, nitrogen, phosphorus, and others are transformed as they move between wetland soils and sediments, the open water, and the atmosphere. Wetlands are populated with plants that can thrive under conditions of saturated soils and low dissolved-oxygen concentrations. The bottoms of many wetlands, especially marshes, are covered with decayed plant material that can accumulate over time to form brown peat or black muck soils. Wetlands are inhabited by animals that need standing water to complete some or all of their life cycles, and they also provide periodic food, water, and shelter for many other animals that spend most of their lives on dry land. The complex and interrelated components of wetlands directly affect one another and there are numerous feedback mechanisms.

Circular

Airborne remote sensing for geology and the environment; present and future

In 1988, a group of leading experts from government, academia, and industry attended a workshop on airborne remote sensing sponsored by the U.S. Geological Survey (USGS) and hosted by the Branch of Geophysics. The purpose of the workshop was to examine the scientific rationale for airborne remote sensing in support of government earth science in the next decade. This report has arranged the six resulting working-group reports under two main headings: (1) Geologic Remote Sensing, for the reports on geologic mapping, mineral resources, and fossil fuels and geothermal resources; and (2) Environmental Remote Sensing, for the reports on environmental geology, geologic hazards, and water resources. The intent of the workshop was to provide an evaluation of demonstrated capabilities, their direct extensions, and possible future applications, and this was the organizational format used for the geologic remote sensing reports. The working groups in environmental remote sensing chose to present their reports in a somewhat modified version of this format. A final section examines future advances and limitations in the field. There is a large, complex, and often bewildering array of remote sensing data available. Early remote sensing studies were based on data collected from airborne platforms. Much of that technology was later extended to satellites. The original 80-m-resolution Landsat Multispectral Scanner System (MSS) has now been largely superseded by the 30-m-resolution Thematic Mapper (TM) system that has additional spectral channels. The French satellite SPOT provides higher spatial resolution for channels equivalent to MSS. Low-resolution (1 km) data are available from the National Oceanographic and Atmospheric Administration's AVHRR system, which acquires reflectance and day and night thermal data daily. Several experimental satellites have acquired limited data, and there are extensive plans for future satellites including those of Japan (JERS), Europe (ESA), Canada (Radarsat), and the United States (EOS). There are currently two national airborne remote sensing programs (photography, radar) with data archived at the USGS' EROS Data Center. Airborne broadband multispectral data (comparable to Landsat MSS and TM but involving several more channels) for limited geographic areas also are available for digital processing and analysis. Narrow-band imaging spectrometer data are available for some NASA experiment sites and can be acquired for other locations commercially. Remote sensing data and derivative images, because of the uniform spatial coverage, availability at different resolutions, and digital format, are becoming important data sets for geographic information system (GIS) analyses. Examples range from overlaying digitized geologic maps on remote sensing images and draping these over topography, to maps of mineral distribution and inferred abundance. A large variety of remote sensing data sets are available, with costs ranging from a few dollars per square mile for satellite digital data to a few hundred dollars per square mile for airborne imaging spectrometry. Computer processing and analysis costs routinely surpass these expenses because of the equipment and expertise necessary for information extraction and interpretation. Effective use requires both an understanding of the current methodology and an appreciation of the most cost-effective solution.

Bulletin

Optimizing an inner-continental shelf geologic framework investigation through data repurposing and machine learning

The U.S. Geological Survey (USGS) and the National Oceanic Atmospheric Administration (NOAA) have collected approximately 5,400 km2 of geophysical and hydrographic data on the Atlantic continental shelf between Delaware and Virginia over the past decade and a half. Although originally acquired for different objectives, the comprehensive coverage and variety of data (bathymetry, backscatter, imagery and physical samples) presents an opportunity to merge collections and create high-resolution, broad-scale geologic maps of the seafloor. This compilation of data repurposes hydrographic data, expands the area of geologic investigation, highlights the versatility of mapping data, and creates new geologic products that would not have been independently possible. The data are classified using a variety of machine learning algorithms, including unsupervised and supervised methods. Four unique classes were targeted for classification, and source data include bathymetry, backscatter, slope, curvature, and shaded-relief. A random forest classifier used on all five source data layers was found to be the most accurate method for these data. Geomorphologic and sediment texture maps are derived from the classified acoustic data using over 200 groundtruth samples. The geologic data products can be used to identify sediment sources, inform resource management, link seafloor environments to sediment texture, improve our understanding of seafloor structure and sediment pathways, and demonstrate how ocean mapping resources can be useful beyond their original intent to maximize the footprint and scientific impact of a study.

Delaware, Maryland, Virginia

Excess nitrogen in selected thermal and mineral springs of the Cascade Range in northern California, Oregon, and Washington: Sedimentary or volcanic in origin?

Anomalous N 2 /Ar values occur in many thermal springs and mineral springs, some volcanic fumaroles, and at least one acid-sulfate spring of the Cascade Range. Our data show that N 2 /Ar values are as high as 300 in gas from some of the hot springs, as high as 1650 in gas from some of the mineral springs, and as high as 2400 in gas from the acid-sulfate spring on Mt. Shasta. In contrast, gas discharging from hot springs that contain nitrogen and argon solely of atmospheric origin typically exhibits N 2 /Ar values of 40–80, depending on the spring temperature. If the excess nitrogen in the thermal and mineral springs is of sedimentary origin then the geothermal potential of the area must be small, but if the nitrogen is of volcanic origin then the geothermal potential must be very large. End-member excess nitrogen (δ 15 N) is +5.3‰ for the thermal waters of the Oregon Cascades but is only about +1‰ for fumaroles on Mt. Hood and the acid-sulfate spring on Mt. Shasta. Dissolved nitrogen concentrations are highest for thermal springs associated with aquifers between 120 and 140°C. Chloride is the major anion in most of the nitrogen-rich springs of the Cascade Range, and N 2 /Ar values generally increase as chloride concentrations increase. Chloride and excess nitrogen in the thermal waters of the Oregon Cascades probably originate in an early Tertiary marine formation that has been buried by the late Tertiary and Quaternary lava flows of the High Cascades. The widespread distribution of excess nitrogen that has been generated in low to moderate-temperature sedimentary environments is further proof of the restricted geothermal potential of the Cascade Range.

Cascade Range

Effects of climate change on nutrition and genetics of White-tailed Ptarmigan

White-tailed Ptarmigan ( Lagopus leucura ) are well suited as a focal species for the study of climate change because they are adapted to cool, alpine environments that are expected to undergo unusually rapid climate change. We compared samples collected in the late 1930s, the late 1960s, and the late 2000s using molecular genetic and stable isotope methods in an effort to determine whether White-tailed Ptarmigan on Mt. Evans, Colorado, have experiences recent environmental changes resulting in shifts in genetic diversity, gene frequency, and nutritional ecology. We genotyped 115 individuals spanning the three time periods, using nine polymorphic microsatellite loci in our genetic analysis. These samples were also analyzed for stable carbon and nitrogen isotopic composition. We found a slight trend of lower heterozygosity through time, and allelic richness values were significantly lower in more recent times, but not significantly using an alpha of 0.05 ( P < 0.1). We found no changes in allele frequencies across time periods, suggesting that population sizes have not changed dramatically. Feather δ 13 C and δ 15 N values decreased significantly across time periods, whereas the range in isotope values increased consistently from the late 1930s to the late time periods. Inferred changes in the nutritional ecology of White-tailed Ptarmigan on Mt. Evans relate primarily to increased atmospheric deposition of nutrients that likely influenced foraging habits and tundra plant composition and nutritional quality. Future work seeks to integrate genetic and isotopic data with long-term demographics to develop a detailed understanding of the interaction among environmental stressors on the long-term viability of ptarmigan populations.

Studies in Avian Biology

Re-establishing marshes can return carbon sink functions to a current carbon source in the Sacramento-San Joaquin Delta of California, USA

The Sacramento-San Joaquin Delta in California was an historic, vast inland freshwater wetland, where organic soils almost 20 meters deep formed over the last several millennia as the land surface elevation of marshes kept pace with sea level rise. A system of levees and pumps were installed in the late 1800s and early 1900s to drain the land for agricultural use. Since then, land surface has subsided more than 7 meters below sea level in some areas as organic soils have been lost to aerobic decomposition. As land surface elevations decrease, costs for levee maintenance and repair increase, as do the risks of flooding. Wetland restoration can be a way to mitigate subsidence by re-creating the environment in which the organic soils developed. A preliminary study of the effect of hydrologic regime on carbon cycling conducted on Twitchell Island during the mid-1990s showed that continuous, shallow flooding allowing for the growth of emergent marsh vegetation re-created a wetland environment where carbon preservation occurred. Under these conditions annual plant biomass carbon inputs were high, and microbial decomposition was reduced. Based on this preliminary study, the U.S. Geological Survey re-established permanently flooded wetlands in fall 1997, with shallow water depths of 25 and 55 centimeters, to investigate the potential to reverse subsidence of delta islands by preserving and accumulating organic substrates over time. Ten years after flooding, elevation gains from organic matter accumulation in areas of emergent marsh vegetation ranged from almost 30 to 60 centimeters, with average annual carbon storage rates approximating 1 kg/m2, while areas without emergent vegetation cover showed no significant change in elevation. Differences in accretion rates within areas of emergent marsh vegetation appeared to result from temporal and spatial variability in hydrologic factors and decomposition rates in the wetlands rather than variability in primary production. Decomposition rates were related to differences in hydrologic conditions, including water temperature, pH, dissolved oxygen concentration, and availability of alternate electron acceptors. The study showed that marsh re-establishment with permanent, low energy, shallow flooding can limit oxidation of organic soils, thus, effectively turning subsiding land from atmospheric carbon sources to carbon sinks, and at the same time reducing flood vulnerability.

California

Wave-current interaction in Willapa Bay

This paper describes the importance of wave-current interaction in an inlet-estuary system. The three-dimensional, fully coupled, Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST) modeling system was applied in Willapa Bay (Washington State) from 22 to 29 October 1998 that included a large storm event. To represent the interaction between waves and currents, the vortex-force method was used. Model results were compared with water elevations, currents, and wave measurements obtained by the U.S. Army Corp of Engineers. In general, a good agreement between field data and computed results was achieved, although some discrepancies were also observed in regard to wave peak directions in the most upstream station. Several numerical experiments that considered different forcing terms were run in order to identify the effects of each wind, tide, and wave-current interaction process. Comparison of the horizontal momentum balances results identified that wave-breaking-induced acceleration is one of the leading terms in the inlet area. The enhancement of the apparent bed roughness caused by waves also affected the values and distribution of the bottom shear stress. The pressure gradient showed significant changes with respect to the pure tidal case. During storm conditions the momentum balance in the inlet shares the characteristics of tidal-dominated and wave-dominated surf zone environments. The changes in the momentum balance caused by waves were manifested both in water level and current variations. The most relevant effect on hydrodynamics was a wave-induced setup in the inner part of the estuary.

Washington

The Pliocene Model Intercomparison Project (PlioMIP) Phase 2: Scientific objectives and experimental design

The Pliocene Model Intercomparison Project (PlioMIP) is a co-ordinated international climate modelling initiative to study and understand climate and environments of the Late Pliocene, as well as their potential relevance in the context of future climate change. PlioMIP examines the consistency of model predictions in simulating Pliocene climate and their ability to reproduce climate signals preserved by geological climate archives. Here we provide a description of the aim and objectives of the next phase of the model intercomparison project (PlioMIP Phase 2), and we present the experimental design and boundary conditions that will be utilized for climate model experiments in Phase 2. Following on from PlioMIP Phase 1, Phase 2 will continue to be a mechanism for sampling structural uncertainty within climate models. However, Phase 1 demonstrated the requirement to better understand boundary condition uncertainties as well as uncertainty in the methodologies used for data&ndash;model comparison. Therefore, our strategy for Phase 2 is to utilize state-of-the-art boundary conditions that have emerged over the last 5 years. These include a new palaeogeographic reconstruction, detailing ocean bathymetry and land&ndash;ice surface topography. The ice surface topography is built upon the lessons learned from offline ice sheet modelling studies. Land surface cover has been enhanced by recent additions of Pliocene soils and lakes. Atmospheric reconstructions of palaeo-CO 2 are emerging on orbital timescales, and these are also incorporated into PlioMIP Phase 2. New records of surface and sea surface temperature change are being produced that will be more temporally consistent with the boundary conditions and forcings used within models. Finally we have designed a suite of prioritized experiments that tackle issues surrounding the basic understanding of the Pliocene and its relevance in the context of future climate change in a discrete way.

Climate of the Past

GSFLOW-GRASS v1.0.0: GIS-enabled hydrologic modeling of coupled groundwater–surface-water systems

The importance of water moving between the atmosphere and aquifers has led to efforts to develop and maintain coupled models of surface water and groundwater. However, developing inputs to these models is usually time-consuming and requires extensive knowledge of software engineering, often prohibiting their use by many researchers and water managers, thus reducing these models' potential to promote science-driven decision-making in an era of global change and increasing water resource stress. In response to this need, we have developed GSFLOW–GRASS, a bundled set of open-source tools that develops inputs for, executes, and graphically displays the results of GSFLOW, the U.S. Geological Survey's coupled groundwater and surface-water flow model. In order to create a robust tool that can be widely implemented over diverse hydro(geo)logic settings, we built a series of GRASS GIS extensions that automatically discretizes a topological surface-water flow network that is linked with an underlying gridded groundwater domain. As inputs, GSFLOW–GRASS requires at a minimum a digital elevation model, a precipitation and temperature record, and estimates of channel parameters and hydraulic conductivity. We demonstrate the broad applicability of the toolbox by successfully testing it in environments with varying degrees of drainage integration, landscape relief, and grid resolution, as well as the presence of irregular coastal boundaries. These examples also show how GSFLOW–GRASS can be implemented to examine the role of groundwater–surface-water interactions in a diverse range of water resource and land management applications.

Geoscientific Model Development