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USGS1997

Transferability of habitat suitability criteria for fishes in warmwater streams

We developed habitat suitability criteria and tested their transferability for nine fishes inhabiting unregulated Piedmont and Coastal Plain streams in Alabama. Criteria for optimal habitat were defined as those ranges of depth, velocity, substrate type, and cover type for which a species' suitability index (proportional abundance divided by proportional habitat availability, scaled from 0 to I) equalled or exceeded 0.4. We evaluated the transferability of criteria between study sites by testing the null hypothesis that species occurrence in a sample was independent of whether or not the sample was taken in optimal habitat. We also tested criteria transference to a large, flow‐regulated river sampled during low‐flow periods. Depth, velocity, and most substrate criteria developed for the bronze darter Percina palmaris successfully transferred between unregulated streams and to the flow‐regulated river samples. All criteria developed for a pair of closely related, allopatric darter species. the newly described lipstick darter Etheostoma chuckwachatte and the greenbreast darter E. jordani , transferred successfully when applied between species (in the unregulated sites) and to the regulated river samples. In contrast, criteria for the Alabama shiner Cyprinella callistia failed nearly all tests of transferability. Criteria for the speckled darter E. stigmaeum , the blackbanded darter P. nigrofasciata , an undescribed Percina species, and a pair of related, allopatric Cyprinella species transferred inconsistently. The species with good criteria transference had high suitability indices for the shallow depths. fast current velocities. and coarse substrates characteristic of riffle species. We suggest that microhabitat criteria for riffle fishes are more likely to provide a transferable measure of habitat quality than criteria for fishes that, although restricted to fluvial habitats, commonly occupy a variety of pool and riffle habitats.

North American Journal of Fisheries Management↗

USGS2014

Dynamic response to strike-slip tectonic control on the deposition and evolution of the Baranof Fan, Gulf of Alaska

The Baranof Fan is one of three large deep-sea fans in the Gulf of Alaska, and is a key component in understanding large-scale erosion and sedimentation patterns for southeast Alaska and western Canada. We integrate new and existing seismic reflection profiles to provide new constraints on the Baranof Fan area, geometry, volume, and channel development. We estimate the fan’s area and total sediment volume to be &sim;323,000 km 2 and &sim;301,000 km 3 , respectively, making it among the largest deep-sea fans in the world. We show that the Baranof Fan consists of channel-levee deposits from at least three distinct aggradational channel systems: the currently active Horizon and Mukluk channels, and the waning system we call the Baranof channel. The oldest sedimentary deposits are in the northern fan, and the youngest deposits at the fan’s southern extent; in addition, the channels seem to avulse southward consistently through time. We suggest that Baranof Fan sediment is sourced from the Coast Mountains in southeastern Alaska, transported offshore most recently via fjord to glacial sea valley conduits. Because of the translation of the Pacific plate northwest past sediment sources on the North American plate along the Queen Charlotte strike-slip fault, we suggest that new channel formation, channel beheadings, and southward-migrating channel avulsions have been influenced by regional tectonics. Using a simplified tectonic reconstruction assuming a constant Pacific plate motion of 4.4 cm/yr, we estimate that Baranof Fan deposition initiated ca. 7 Ma.

Geosphere↗

USGS2013

Velocity, water-quality, and bathymetric surveys of the Grays Landing and Maxwell Navigation Pools, and Selected Tributaries to the Monongahela River, Pennsylvania, 2010–11

The U.S. Geological Survey (USGS) conducted velocity, water-quality, and bathymetric surveys from spring 2010 to summer 2011 in the Grays Landing and Maxwell navigation pools of the Monongahela River, Pennsylvania, and selected tributaries in response to elevated levels of total dissolved solids (TDS) recorded in early September 2009. Velocity data were collected using an Acoustic Doppler Current Profiler. Water-quality surveys included the in-situ collection of specific-conductance, water-temperature, and turbidity data using a water-quality sonde. Additionally, discrete water samples were collected and analyzed for TDS, chloride, and sulfate. Bathymetric data were collected using an echo sounder, and the shoreline was delineated using a laser range finder and electronic compass. The data were geo-referenced using a differential global positioning system and navigational software. Horizontal (x, y) coordinates were referenced to the North American Datum of 1983. Depth (z) elevations were referenced to the North American Vertical Datum of 1988. The data are provided in electronic format (appendix 1) and may be downloaded and can be used in a geographic information system for cartographic display and data analysis.

Pennsylvania↗

USGS1994

Overview of the National Water-Quality Assessment Program

The Nation's water resources are the basis for life and our economic vitality. These resources support a complex web of human activities and fishery and wildlife needs that depend upon clean water. Demands for good-quality water for drinking, recreation, farming, and industry are rising, and as a result, the American public is concerned about the condition and sustainability of our water resources. The American public is asking: Is it safe to swim in and drink water from our rivers or lakes? Can we eat the fish that come from them? Is our ground water polluted? Is water quality degrading with time, and if so, why? Has all the money we've spent to clean up our waters, done any good? The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program was designed to provide information that will help answer these questions. NAWQA is designed to assess historical, current, and future water-quality conditions in representative river basins and aquifers nationwide. One of the primary objectives of the program is to describe relations between natural factors, human activities, and water-quality conditions and to define those factors that most affect water quality in different parts of the Nation. The linkage of water quality to environmental processes is of fundamental importance to water-resource managers, planners, and policy makers. It provides a strong and unbiased basis for better decisionmaking by those responsible for making decisions that affect our water resources, including the United States Congress, Federal, State, and local agencies, environmental groups, and industry. Information from the NAWQA Program also will be useful for guiding research, monitoring, and regulatory activities in cost effective ways.

Open-File Report↗

USGS2021

Capacity of two Sierra Nevada rivers for reintroduction of anadromous salmonids: Insights from a high-resolution view

Historically, anadromous steelhead Oncorhynchus mykiss and spring-run Chinook Salmon O. tshawytscha used high-elevation rivers in the Sierra Nevada of California but were extirpated in the 20th century by construction of impassable dams. Plans to reintroduce the fish by opening migratory passage across the dams and reservoirs can only succeed if upstream habitats have the capacity to support viable populations of each species. To estimate capacity in the Tuolumne and Merced rivers of the central Sierra Nevada, we used a high-resolution approach based on remote sensing and dynamic habitat modeling. Our results suggested that for both species in both systems, sediment grain sizes would support widespread spawning and the water temperatures, depths, and velocities would generate ample capacity for fry and juveniles. However, the unregulated Merced River was consistently too warm for adult Chinook Salmon to hold in the dry season prior to spawning, while the regulated Tuolumne River maintained a cooler, more stable thermal regime with a capacity for thousands of holding adults. In our high-resolution approach, we also discovered several specific physical controls on life history expression, including thermal constraints on the timing of spawning, hydraulic prompts for downstream migration of fry, divergence of the hydraulic niches of steelhead and Chinook Salmon, and a key but uncertain role for thermal tolerance in adult Chinook Salmon. Our results suggested that steelhead reintroduction could succeed in either system and Chinook Salmon could succeed in the Tuolumne River if passage strategies account for large numbers of migrant fry and juveniles driven downstream by winter storms and snowmelt. The Merced River appeared too warm for adult Chinook Salmon, which raises questions about the current limited understanding of thermal tolerance in holding adults. Our study shows how a high-resolution approach can provide valuable insights on specific limiting factors that must be addressed for reintroduction to succeed.

California↗

USGS2021

Generic relationships of New World Jerusalem crickets (Orthoptera: Stenopelmatoidea: Stenopelmatinae), including all known species of Stenopelmatus

The New World Jerusalem crickets currently consist of 4 genera: Stenopelmatus Burmeister, 1838 , with 33 named entities; Ammopelmatus Tinkham, 1965 , with 2 described species; Viscainopelmatus Tinkham, 1970 , with 1 described species, and Stenopelmatopterus Gorochov, 1988 , with 3 described species. We redefine the generic boundaries of these 4 genera, synonymize Stenopelmatopterus under Stenopelmatus , and synonymize Viscainopelmatus under Ammopelmatus. We then discuss, and illustrate, all the types of the species of Stenopelmatus, all of which only occur south of the United States’ border. We recognize as valid the following 5 described Mexican and Central American species: S. ater, S. piceiventris, S. sartorianus, S. talpa, and S. typhlops. We declare the following 13 described Mexican and Central American Stenopelmatus taxa as nomen dubium: S. calcaratus, S. erythromelus, S. guatemalae, S. histrio, S. lessonae, S. lycosoides, S. mexicanus, S. minor, S. nieti, S. sallei, S. sumichrasti, S. toltecus, and S. vicinus. We designate a neotype for S. talpa and lectotypes for S. ater, S. guatemalae, S. histrio, S. lessonae, S. mexicanus, S. minor, S. nieti, S. sallei, S. sumichrasti, and S. toltecus . We assign a type locality for S. piceiventris. We concur with the previous synonymy of S. politus under S. sartorianus. We describe 14 new species of Stenopelmatus from Mexico, Honduras and Ecuador, based on a combination of adult morphology, DNA, calling song drumming pattern, distribution, and karyotype: S. chiapas sp. nov. , S. cusuco sp. nov. , S. diezmilpies sp. nov ., S. durango sp. nov. , S. ecuadorensis sp. nov. , S. faulkneri sp. nov. , S. honduras sp. nov. , S. hondurasito sp. nov. , S. mineraldelmonte sp. nov. , S. nuevoleon sp. nov. , S. perote sp. nov. , S. saltillo sp. nov. , S. sanfelipe sp. nov. , and S. zimapan sp. nov . We transfer the following 16 described United States taxa, plus S. cephalotes from the “west coast of North America”, from Stenopelmatus to Ammopelmatus: A. cahuilaensis, A. californicus, A. cephalotes, A. fasciatus, A. fuscus, A. hydrocephalus, A. intermedius, A. irregularis, A. longispinus, A. mescaleroensis, A. monahansensis, A. navajo, A. nigrocapitatus, A. oculatus, A. pictus, and A. terrenus, along with the Mexican taxon A. comanchus : these species will be discussed in a subsequent paper (Weissman et al. in prep). We believe that all new Jerusalem cricket species descriptions should include, at a minimum, calling drum (most important) and DNA information.

Zootaxa↗

USGS2004

Climate change: Conflict of observational science, theory, and politics

Debate over whether human activity causes Earth climate change obscures the immensity of the dynamic systems that create and maintain climate on the planet. Anthropocentric debate leads people to believe that they can alter these planetary dynamic systems to prevent that they perceive as negative climate impacts on human civilization. Although politicians offer simplistic remedies, such as the Kyoto Protocol, global climate continues to change naturally. Better planning for the inevitable dislocations that have followed natural global climate changes throughout human history requires us to accept the fact that climate will change, and that human society must adapt to the changes. Over the last decade, the scientific literature reported a shift in emphasis from attempting to build theoretical models of putative human impacts on climate to understanding the planetwide dynamic processes that are the natural climate drivers. The current scientific literature is beginning to report the history of past climate change, the extent of natural climate variability, natural system drivers, and the episodicity of many climate changes. The scientific arguments have broadened from focus upon human effects on climate to include the array of natural phenomena that have driven global climate change for eons. However, significant political issues with long-term social consequences continue their advance. This paper summarizes recent scientific progress in climate science and arguments about human influence on climate. ?? 2004. The American Association of Petroleum Geologists. All rights reserved.

American Association of Petroleum Geologists Bulle↗

USGS2015

Status of the Topeka shiner in west-central Iowa

The Topeka shiner Notropis topeka is a federally endangered fish species that is estimated to occupy only 20% of its historic range. In Iowa Topeka shiners have been in decline for decades. Our goal was to determine the present distribution of Topeka shiners in the west-central portion of their range in Iowa and to characterize the extent of its decline. We compared the current distribution to distributions generated from earlier collections. We found Topeka shiners in six of 22 watersheds where they occurred historically. Status of Topeka shiners was judged to be stable in 27% of the watersheds, at risk in 45% of the watersheds, and possibly extirpated in 27% of the watersheds. None were classified as increasing. Based on comparison of the historical distribution with more recent ones, Topeka shiners in west-central Iowa showed a 27% decline a decade ago and currently exhibits a 73% decline in their distribution. The collective evidence from four of five other states in the species’ range reveals similar declines. This study provides further information on the local distribution and extent of decline for this federally endangered species with a greatly reduced and fragmented overall distribution.

American Midland Naturalist↗

USGS1999

Sensitivity of the North Atlantic Basin to cyclic climatic forcing during the early Cretaceous

Striking cyclic interbeds of laminated dark-olive to black marlstone and bioturbated white to light-gray limestone of Neocomian (Early Cretaceous) age have been recovered at Deep Sea Drilling Project (DSDP) and Ocean Drilling Project (ODP) sites in the North Atlantic. These Neocomian sequences are equivalent to the Maiolica Formation that outcrops in the Tethyan regions of the Mediterranean and to thick limestone sequences of the Vocontian Trough of France. This lithologic unit marks the widespread deposition of biogenic carbonate over much of the North Atlantic and Tethyan seafloor during a time of overall low sealevel and a deep carbonate compensation depth. The dark clay-rich interbeds typically are rich in organic carbon (OC) with up to 5.5% OC in sequences in the eastern North Atlantic. These eastern North Atlantic sequences off northwest Africa, contain more abundant and better preserved hydrogen-rich, algal organic matter (type II kerogen) relative to the western North Atlantic, probably in response to coastal upwelling induced by an eastern boundary current in the young North Atlantic Ocean. The more abundant algal organic matter in sequences in the eastern North Atlantic is also expressed in the isotopic composition of the carbon in that organic matter. In contrast, organic matter in Neocomian sequences in the western North Atlantic along the continental margin of North America has geochemical and optical characteristics of herbaceous, woody, hydrogen-poor, humic, type III kerogen. The inorganic geochemical characteristics of the dark clay-rich (<60% CaCO3) interbeds in Neocomian sequences in the North American Basin and the Cape Verde Basin off northwest Africa suggest that most of the detrital clastic material was derived from deep-sea fans off North America and Morocco during relatively wet intervals to dilute pelagic biogenic carbonate. Inorganic geochemical characteristics of the clastic material in the bioturbated, white, carbonate-rich (>80% CaCO3) interbeds in both the eastern and western basins of the North Atlantic suggest that they contain minor amounts of relatively unweathered eolian dust derived from northwest Africa during dry intervals.

Journal of Foraminiferal Research↗

USGS2009

Application of models to conservation planning for terrestrial birds in North America

Partners in Flight (PIF), a public–private coalition for the conservation of land birds, has developed one of four international bird conservation plans recognized under the auspices of the North American Bird Conservation Initiative (NABCI). Partners in Flight prioritized species most in need of conservation attention and set range-wide population goals for 448 species of terrestrial birds. Partnerships are now tasked with developing spatially explicit estimates of the distribution, and abundance of priority species across large ecoregions and identifying habitat acreages needed to support populations at prescribed levels. The PIF Five Elements process of conservation design identifies five steps needed to implement all bird conservation at the ecoregional scale. Habitat assessment and landscape characterization describe the current amounts of different habitat types and summarize patch characteristics, and landscape configurations that define the ability of a landscape to sustain healthy bird populations and are a valuable first step to describing the planning area before pursuing more complex species-specific models. Spatially linked database models, landscape-scale habitat suitability models, and statistical models are viable alternatives for predicting habitat suitability or bird abundance across large planning areas to help assess conservation opportunities, design landscapes to meet population objectives, and monitor change in habitat suitability or bird numbers over time. Bird conservation in the United States is a good example of the use of models in large-scale wildlife conservation planning because of its geographic extent, focus on multiple species, involvement of multiple partners, and use of simple to complex models. We provide some background on the recent development of bird conservation initiatives in the United States and the approaches used for regional conservation assessment and planning. We focus on approaches being used for landscape characterization and assessment, and bird population response modeling.

Book chapter↗

USGS2008

Summary and Analysis of the U.S. Government Bat Banding Program

This report summarizes the U.S. Government Bat Banding Program (BBP) from 1932 to 1972. More than 2 million bands were issued during the program, of which approximately 1.5 million bands were applied to 36 bat species by scientists in many locations in North America including the U.S., Canada, Mexico, and Central America. Throughout the BBP, banders noticed numerous and deleterious effects on bats, leading to a moratorium on bat banding by the U.S. Fish and Wildlife Service, and a resolution to cease banding by the American Society of Mammalogists in 1973. One of the main points of the memorandum written to justify the moratorium was to conduct a 'detailed evaluation of the files of the bat-banding program.' However, a critical and detailed evaluation of the BBP was never completed. In an effort to satisfy this need, I compiled a detailed history of the BBP by examining the files and conducting a literature review on bat banding activities during the program. I also provided a case study in managing data and applying current mark-recapture theory to estimate survival using the information from a series of bat bands issued to Clyde M. Senger during the BBP. The majority of bands applied by Senger were to Townsend's big-eared bat (Corynorhinus townsendii), a species of special concern for many states within its geographic range. I developed a database management system for the bat banding records and then analyzed and modeled survival of hibernating Townsend's big-eared bats at three main locations in Washington State using Cormack-Jolly-Seber (CJS) open models and the modeling capabilities of Program MARK. This analysis of a select dataset in the BBP files provided relatively precise estimates of survival for wintering Townsend's big-eared bats. However, this dataset is unique due to its well-maintained and complete state and because there were high recapture rates over the course of banding; it is doubtful that other unpublished datasets of the same quality exist buried in the BBP files for further analyses. Lastly, I make several recommendations based on the findings of this summary and analysis, the most important of which is that marking bats with standard metal or split-ring forearm bands should not be considered for mark-recapture studies unless the information sought and the potential for obtaining unbiased estimates from that information vastly outweighs the potential negative effects to the bats.

Open-File Report↗

USGS2002

Quantifying flow-dependent changes in subyearling fall chinook salmon rearing habitat using two-dimensional spatially explicit modeling

We used an analysis based on a geographic information system (GIS) to determine the amount of rearing habitat and stranding area for subyearling fall chinook salmon Oncorhynchus tshawytscha in the Hanford Reach of the Columbia River at steady-state flows ranging from 1,416 to 11,328 m3/s. High-resolution river channel bathymetry was used in conjunction with a two-dimensional hydrodynamic model to estimate water velocities, depths, and lateral slopes throughout our 33-km study area. To relate the probability of fish presence in nearshore habitats to measures of physical habitat, we developed a logistic regression model from point electrofishing data. We only considered variables that were compatible with a GIS and therefore excluded other variables known to be important to juvenile salmonids. Water velocity and lateral slope were the only two variables included in our final model. The amount of available rearing habitat generally decreased as flow increased, with the greatest decreases occurring between 1,416 and 4,814 m3/s. When river discharges were between 3,682 and 7,080 m3/s, flow fluctuations of 566 m3/s produced the smallest change in available rearing area (from -6.3% to +6.8% of the total). Stranding pool area was greatly reduced at steady-state flows exceeding 4,531 m3/s, but the highest net gain in stranding area was produced by 850 m3/s decreases in flow when river discharges were between 5,381 and 5,664 m3/s. Current measures to protect rearing fall chinook salmon include limiting flow fluctuations at Priest Rapids Dam to 850 m3/s when the dam is spilling water and when the weekly flows average less than 4,814 m3/s. We believe that limiting flow fluctuations at all discharges would further protect subyearling fall chinook salmon.

Washington↗

USGS2013

Influences of geomorphology and geology on alpine treeline in the American West - More important than climatic influences?

The spatial distribution and pattern of alpine treeline in the American West reflect the overarching influences of geological history, lithology and structure, and geomorphic processes and landforms, and geologic and geomorphic factors—both forms and processes—can control the spatiotemporal response of the ecotone to climate change. These influences occur at spatial scales ranging from the continental scale to fine scale processes and landforms at the slope scale. Past geomorphic influences, particularly Pleistocene glaciation, have also left their impact on treeline, and treelines across the west are still adjusting to post-Pleistocene conditions within Pleistocene-created landforms. Current fine scale processes include solifluction and changes on relict solifluction and digging by animals. These processes should be examined in detail in future studies to facilitate a better understanding of where individual tree seedlings become established as a primary response of the ecotone to climate change.

The Rocky Mountains↗

USGS2004

Colorado Canyons National Conservation Area 2003 visitor use survey: Completion report

This report represents the analysis of research conducted by the U.S. Geological Survey (USGS) for the Bureau of Land Management (BLM). The purpose is to provide socio-economic and recreational use information that can be used in the development of a Resource Management Plan (RMP) for the Colorado Canyons National Conservation Area (CCNCA). The results reported here deal primarily with recreation-based activities in four areas: Kokopelli Loops, Rabbit Valley, Loma Boat Launch, and Devil’s Canyon. In the fall of 2002, researchers from the Policy Analysis and Science Assistance Program (PASA) of the Fort Collins Science Center (FORT) in the USGS met with the staff of the CCNCA to discuss the issues related to social, economic, and human dimensions of natural resource management related to the RMP. As a result, a research study was designed to investigate the recreational experiences of visitors and their attitudes toward the management of the conservation area. In the spring of 2003, PASA conducted an intercept survey of recreational users at the CCNCA and a mail survey of local residents who were actively involved in decision-making regarding recreation on public lands in Mesa County, Colorado. Two hundred and three (203) mail surveys (66%) were returned and all of them were completed in full and considered usable. The intercept survey had a response rate with a range from 56%–64% among the four sites that were surveyed. We developed a questionnaire (OMB Control Number: 1040-0001) to answer the following questions: What are the important differences in citizens’ attitudes regarding recreation at the CCNCA? What are the factors that explain the differences in attitudes and preferences regarding recreation management of the NCA? What are citizens’ attitudes and preferences regarding their attitudes about paying a fee to visit the CCNCA? In general, respondents at all sites reported having an excellent or good recreation experience and almost all indicated that they intended to return. The results from the intercept survey indicated that across four sites 1(Kokopelli Loops, Devil’s Canyon, Loma Boat Launch, and Rabbit Valley) respondents reported support for undeveloped use and recreation restrictions to limit resource impacts. Respondents indicated that managing sites for undeveloped use was a good idea. The respondents from the mail survey generally had a positive orientation toward current management practices of the CCNCA. According to our surveys, non-motorized trail related activities were among the three most popular activities people engaged in both close to home and while away. These trail-based recreational activities included walking, running, mountain bike riding, and horseback riding. Research has shown that people participate in these activities for many reasons including learning about nature, exercising, to learning about paleontology, escaping for awhile, and socializing with family and friends (Taylor, 2000). National data indicate that larger percentages of the general American population engage in trail activities than in many other traditional outdoor activities (Cordell, 1999). Over 65% of people in the U.S. engage in walking as a recreational activity (Figure 1). We found that people wanted to experience the outdoors and the CCNCA provided a good place to do it. Trail activities are often those that people participate in on a regular basis as a way to exercise. This can make trail related activities more attractive from a management standpoint because people who participate in an activity may be more likely to be repeat visitors.

Open-File Report↗

USGS2009

A revised burial dose estimation procedure for optical dating of youngand modern-age sediments

The presence of genuinely zero-age or near-zero-age grains in modern-age and very young samples poses a problem for many existing burial dose estimation procedures used in optical (optically stimulated luminescence, OSL) dating. This difficulty currently necessitates consideration of relatively simplistic and statistically inferior age models. In this study, we investigate the potential for using modified versions of the statistical age models of Galbraith et??al. [Galbraith, R.F., Roberts, R.G., Laslett, G.M., Yoshida, H., Olley, J.M., 1999. Optical dating of single and multiple grains of quartz from Jinmium rock shelter, northern Australia: Part I, experimental design and statistical models. Archaeometry 41, 339-364.] to provide reliable equivalent dose (D e ) estimates for young and modern-age samples that display negative, zero or near-zero D e estimates. For this purpose, we have revised the original versions of the central and minimum age models, which are based on log-transformed D e values, so that they can be applied to un-logged D e estimates and their associated absolute standard errors. The suitability of these 'un-logged' age models is tested using a series of known-age fluvial samples deposited within two arroyo systems from the American Southwest. The un-logged age models provide accurate burial doses and final OSL ages for roughly three-quarters of the total number of samples considered in this study. Sensitivity tests reveal that the un-logged versions of the central and minimum age models are capable of producing accurate burial dose estimates for modern-age and very young (<350??yr) fluvial samples that contain (i) more than 20% of well-bleached grains in their D e distributions, or (ii) smaller sub-populations of well-bleached grains for which the D e values are known with high precision. Our results indicate that the original (log-transformed) versions of the central and minimum age models are still preferable for most routine dating applications, since these age models are better suited to the statistical properties of typical single-grain and multi-grain single-aliquot D e datasets. However, the unique error properties of modern-age samples, combined with the problems of calculating natural logarithms of negative or zero-Gy D e values, mean that the un-logged versions of the central and minimum age models currently offer the most suitable means of deriving accurate burial dose estimates for very young and modern-age samples. ?? 2009 Elsevier Ltd. All rights reserved.

Quaternary Geochronology↗

USGS2020

Subspecies differentiation in an enigmatic chaparral shrub species

Premise Delimiting biodiversity units is difficult in organisms in which differentiation is obscured by hybridization, plasticity, and other factors that blur phenotypic boundaries. Such work is more complicated when the focal units are subspecies, the definition of which has not been broadly explored in the era of modern genetic methods. Eastwood manzanita ( Arctostaphylos glandulosa Eastw.) is a widely distributed and morphologically complex chaparral shrub species with much subspecific variation, which has proven challenging to categorize. Currently 10 subspecies are recognized, however, many of them are not geographically segregated, and morphological intermediates are common. Subspecies delimitation is of particular importance in this species because two of the subspecies are rare. The goal of this study was to apply an evolutionary definition of “subspecies” to characterize structure within Eastwood manzanita. Methods We used publicly available geospatial environmental data and reduced‐representation genome sequencing to characterize environmental and genetic differentiation among subspecies. In addition, we tested whether subspecies could be differentiated by environmentally associated genetic variation. Results Our analyses do not show genetic differentiation among subspecies of Eastwood manzanita, with the exception of one of the two rare subspecies. In addition, our environmental analyses did not show ecological differentiation, though limitations of the analysis prevent strong conclusions. Conclusions Genetic structure within Eastwood manzanita does not correspond to current subspecies circumscriptions, but rather reflects geographic distribution. Our study suggests that subspecies concepts need to be reconsidered in long‐lived plant species, especially in the age of next‐generation sequencing.

American Journal of Botany↗

USGS1997

Sturgeon rivers: An introduction to acipenseriform biogeography and life history

We present an overview of the global distribution of all 27 living species of Acipenseriformes in an attempt to understand their biogeographic history and the range of life history patterns displayed by different species. Our biogeographic analysis (based on the most recent phylogenetic analysis including fossil Acipenseriformes) suggests that Acipenseriformes originated in Europe, and that early diversification took place in Asia. Acipenseriformes do not have a common life history; variation within and between species is the rule rather than exception. The few relatively well-known case studies (e.g., Caspian Sea sturgeons, European Atlantic sturgeons in the Gironde system, and shortnose and North American Atlantic sturgeons in rivers of the east coast of America) greatly influence what we think we know about sturgeon biology. Our present level of phylogenetic understanding does not allow us to determine whether anadromy or potamodromy is the plesiomorphic life history pattern for Acipenseriformes. We propose that rivers in which spawning occurs must be the central unit for biogeographic analysis of living Acipenseriformes. After mapping these rivers, we recognized nine biogeographic provinces for acipenseriforms. Some repeated historical patterns emerge from this analysis, but, again, we are limited by our current understanding of phylogenetic relationships within the genus Acipenser in particular. Distribution and biogeographic data are central to deciding where to make new efforts to update existing status information for acipenseriform species. We single out a widely ranging and highly variable species, Acipenser ruthenus, as particularly intriguing, for it spans three of our nine biogeographic provinces, and apparently has different life history patterns in different river systems. Finally, we note new areas in need of basic research, particularly the need for more detailed descriptions and analyses of life histories of different populations of sturgeons.

Environmental Biology of Fishes↗

USGS2008

Mars Exploration Rover Navigation Camera in-flight calibration

The Navigation Camera (Navcam) instruments on the Mars Exploration Rover (MER) spacecraft provide support for both tactical operations as well as scientific observations where color information is not necessary: large-scale morphology, atmospheric monitoring including cloud observations and dust devil movies, and context imaging for both the thermal emission spectrometer and the in situ instruments on the Instrument Deployment Device. The Navcams are a panchromatic stereoscopic imaging system built using identical charge-coupled device (CCD) detectors and nearly identical electronics boards as the other cameras on the MER spacecraft. Previous calibration efforts were primarily focused on providing a detailed geometric calibration in line with the principal function of the Navcams, to provide data for the MER navigation team. This paper provides a detailed description of a new Navcam calibration pipeline developed to provide an absolute radiometric calibration that we estimate to have an absolute accuracy of 10% and a relative precision of 2.5%. Our calibration pipeline includes steps to model and remove the bias offset, the dark current charge that accumulates in both the active and readout regions of the CCD, and the shutter smear. It also corrects pixel-to-pixel responsivity variations using flat-field images, and converts from raw instrument-corrected digital number values per second to units of radiance (W m-2 nm-1 sr-1), or to radiance factor (I/F). We also describe here the initial results of two applications where radiance-calibrated Navcam data provide unique information for surface photometric and atmospheric aerosol studies. Copyright 2008 by the American Geophysical Union.

Journal of Geophysical Research E: Planets↗