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Predictability of invasive Argentine ant distribution across Mediterranean ecoregions of southern California

The invasiveness of nonnative taxa can vary across a landscape due to environmental gradients, suggesting that location-dependent management strategies may be more effective at reducing spread compared to a “one size fits all” approach across the entire introduced range. Using bait stations placed along linear transects within habitat preserves, we tested for effects of ecoregion, vegetation, soil moisture, habitat edge type (i.e., moisture source), and distance from edges on the presence of the invasive Argentine ant Linepithema humile in San Diego County, California, a region with high indigenous biodiversity and numerous rare and protected species. Our results showed an inverse relationship between the presence of native ant species and the presence of the Argentine ant across ecoregions, with the latter reaching peak abundance in the coastal terrace. Argentine ant presence was negatively associated with distance from all edge types regardless of location, but the magnitude of this effect varied among ecoregions. In the xeric foothill and inland valleys, the probability of occurrence was nearly 0 at distances of 200 m and 750 m from moisture edges, respectively, whereas in the coastal terrace, the probability remained above 0.80 at distances up to 1.25 km. When compared to previous studies at different spatial scales, these findings provide an alternative perspective on the invasiveness of the Argentine ant at the landscape level. Our results further suggest that efforts to control spread in regions with a Mediterranean climate may be more successful in inland areas, where the ant is likely to have lower environmental tolerance and native ant species may be better able to generate biotic resistance. In contrast, different tactics and expectations may be necessary for coastal areas, where the same constraints are diminished or absent.

California

Selenium in the Kootenai River Basin, Montana and Idaho, United States, and British Columbia, Canada

Selenium entering the 90-mile long transboundary Koocanusa Reservoir (also called Lake Koocanusa) in southeastern British Columbia, Canada, and northwestern Montana, United States, has been measured at concentrations above State and Federal water-quality and aquatic life standards. The reservoir is within the international Kootenai (or “Kootenay” in Canada) drainage basin, which contains critical habitat for native fish species and is impounded by Libby Dam 16 miles upstream from Libby, Montana. Since 1984, selenium concentrations have ranged from below detection to greater than 8 micrograms per liter in the Elk River, measured 2.2 miles above its discharge into Koocanusa Reservoir at a British Columbia environmental monitoring station (site 0200016). Selenium is a required micro-nutrient, but elevated concentrations in water bioaccumulate in egg-laying fish and birds, causing various sublethal effects and death. One possible source of selenium in the Kootenai River Basin is the excavation of bedrock in the Elk River Valley to access coal seams for metallurgical steelmaking and coal production. Five open-pit coal mines are operating in this region of southeastern British Columbia that produce about 21 million tons of metallurgical coal annually. Site-specific selenium standards were established for the reservoir in 2020 following collaborative work by the U.S. Geological Survey, Montana Department of Environmental Quality, the British Columbia Ministry of Environment and Climate Change Strategy, the Lake Koocanusa Monitoring and Research Working Group, and the Selenium Technical Subcommittee. The standards of 0.8 microgram per liter for dissolved selenium in the water column and 15.1 milligrams per kilogram dry weight for fish egg (ovary) tissue (in addition to the muscle and wholebody standards) were adopted into Montana State law in 2020 and approved by the U.S. Environmental Protection Agency in 2021.

British Columbia, Idaho, Montana

Monitoring protocol development and assessment for narrowly endemic toads in Nevada, 2018

Several species and subspecies of toads are endemic to small spring systems in the Great Basin, and their restricted ranges and habitat extent make them vulnerable to environmental perturbations. Very little is known about several of these toad populations, so a group of stakeholders including the U.S. Geological Survey, U.S. Fish and Wildlife Service, Bureau of Land Management, Nevada Department of Wildlife, the U.S. Navy, U.S. Forest Service, and Oregon State University met to discuss information needs on these populations and to develop a monitoring protocol that would detect population changes over time. In cooperation with the U.S. Fish and Wildlife Service, the U.S. Geological Survey implemented the proposed survey protocol, a multi-state occupancy design, for three sites: Dixie Valley, Railroad Valley, and Hot Creek, to evaluate its ease of implementation and effectiveness. We found that the multi-state occupancy protocol worked well in the Dixie Valley and, with some refinement, would likely work well in the Railroad Valley. We suggest that capture-mark-recapture of adults might be a more effective approach at Hot Creek. For most life stages of most populations, detection probabilities were positively related to survey duration up to 20 minutes, and the best time of day to conduct surveys varied by life stage and population. We make population-specific suggestions for the number of surveys and their timing and duration. Annual surveys using the suggested survey protocols will likely allow estimation of trends in the proportion of area of each population existing in different population states (occupied, occupied with evidence of reproduction, and unoccupied) and in most cases can be readily implemented with minimal training or handling of toads.

California, Idaho, Nevada, Oregon, Utah

Spring bird migration in Mississippi Alluvial Valley forests

We surveyed forest songbirds during migration in bottomland hardwood forest stands and managed cottonwood ( Populus deltoides ) plantations in northeast Louisiana and west-central Mississippi between 24 March and 24 May 1996 and 1997. We detected more bird species in bottomland hardwood stands than in cottonwood stands. Within hardwood stands, we detected more individuals in stands subjected to uneven-aged timber harvest than in unmanaged stands. Early in migration, avian species composition was similar in both forest types, being comprised mainly of short-distance migrants. Bird species composition in these forest types became increasingly disparate as long-distance neotropical-nearctic migrants arrived. Ten bird species were characteristic of bottomland hardwood forests, whereas eight different species were characteristic of managed cottonwood plantations. Because these two forest types supported different bird communities, both forest types provide important inland stopover habitat during migration. Silvicultural management of bottomland hardwood forests that increases their understory vegetation will provide forested habitat for a more species rich and abundant population of songbirds during migration.

American Midland Naturalist

Making molehills out of mountains: Landscape genetics of the Mojave desert tortoise

Heterogeneity in habitat often influences how organisms traverse the landscape matrix that connects populations. Understanding landscape connectivity is important to determine the ecological processes that influence those movements, which lead to evolutionary change due to gene flow. Here, we used landscape genetics and statistical models to evaluate hypotheses that could explain isolation among locations of the threatened Mojave desert tortoise ( Gopherus agassizii ). Within a causal modeling framework, we investigated three factors that can influence landscape connectivity: geographic distance, barriers to dispersal, and landscape friction. A statistical model of habitat suitability for the Mojave desert tortoise, based on topography, vegetation, and climate variables, was used as a proxy for landscape friction and barriers to dispersal. We quantified landscape friction with least-cost distances and with resistance distances among sampling locations. A set of diagnostic partial Mantel tests statistically separated the hypotheses of potential causes of genetic isolation. The best-supported model varied depending upon how landscape friction was quantified. Patterns of genetic structure were related to a combination of geographic distance and barriers as defined by least-cost distances, suggesting that mountain ranges and extremely low-elevation valleys influence connectivity at the regional scale beyond the tortoises’ ability to disperse. However, geographic distance was the only influence detected using resistance distances, which we attributed to fundamental differences between the two ways of quantifying friction. Landscape friction, as we measured it, did not influence the observed patterns of genetic distances using either quantification. Barriers and distance may be more valuable predictors of observed population structure for species like the desert tortoise, which has high dispersal capability and a long generation time.

California, Nevada, Utah, Arizona

Areas contributing recharge to production wells and effects of climate change on the groundwater system in the Chipuxet River and Chickasheen Brook Basins, Rhode Island

The Chipuxet River and Chickasheen Brook Basins in southern Rhode Island are an important water resource for public and domestic supply, irrigation, recreation, and aquatic habitat. The U.S. Geological Survey, in cooperation with the Rhode Island Department of Health, began a study in 2012 as part of an effort to protect the source of water to six large-capacity production wells that supply drinking water and to increase understanding of how climate change might affect the water resources in the basins. Soil-water-balance and groundwater-flow models were developed to delineate the areas contributing recharge to the wells and to quantify the hydrologic response to climate change. Surficial deposits of glacial origin ranging from a few feet to more than 200 feet thick overlie bedrock in the 24.4-square mile study area. These deposits comprise a complex and productive aquifer system. Simulated areas contributing recharge to the production wells covered a total area of 0.63 square miles for average well withdrawal rates from 2007 through 2011 (total rate of 583 gallons per minute). Simulated areas contributing recharge for the maximum well pumping capacities (total rate of 3,700 gallons per minute) covered a total area of 2.55 square miles. Most simulated areas contributing recharge extend upgradient of the wells to morainal and upland till deposits and to groundwater divides. Some simulated areas contributing recharge include small, isolated areas remote from the wells. Relatively short groundwater traveltimes from recharging locations to discharging wells indicated that the wells are vulnerable to contamination from land-surface activities; median traveltimes ranged from 3.5 to 8.6 years for the production wells examined, and 57 to 91 percent of the traveltimes were 10 years or less. Land cover in the areas contributing recharge includes a substantial amount of urban and agriculture land use for five wells adjacent to the Chipuxet River; for one well adjacent to a tributary stream, land use is less developed. The calibrated groundwater-flow model provided a single, best representation of the areas contributing recharge to a production well. The parameter variance-covariance matrix from model calibration was used to create parameter sets that reflect the uncertainty of the parameter estimates and the correlation among parameters to evaluate the uncertainty associated with the predicted contributing areas to the wells. A Monte Carlo analysis led to contributing areas expressed as a probability distribution that differed from a single deterministic contributing area. Because of the effects of parameter uncertainty, the size of the probabilistic contributing areas for both average and maximum pumping rates was larger than the size of the deterministic contributing areas for the wells. Thus, some areas not in the deterministic contributing area might actually be in the contributing area, including additional areas of urban and agricultural land use that has the potential to contaminate groundwater. Additional areas that might be in the contributing area included recharge originating near the pumping wells that have relatively short groundwater-flow paths and traveltimes. At the maximum pumping rates, areas associated with low probabilities extended long distances along groundwater divides in the uplands remote from the wells. Climate projections for the Chipuxet River and Chickasheen Brook Basins from downscaled output from general circulation models indicate that mean annual temperature might increase by 4.7 degrees Fahrenheit and 8.0 degrees Fahrenheit by the late 21st century (2070–99) compared with the late 20th century (1970–99) under scenarios of lower and higher emissions of greenhouse gases, respectively. By the late 21st century, winter and spring precipitation is projected to increase by 12 to 17 percent, summer precipitation to increase by about the same as mean annual precipitation (8 percent), and fall precipitation to decrease by 5 percent for both emission scenarios compared with the late 20th century. Soil-water-balance simulations indicate that, although precipitation is expected to increase in three seasons, only in winter do precipitation increases exceed actual evapotranspiration increases. Recharge is projected to decrease in fall and generally change little in spring and summer. By the late 21st century, winter recharge is expected to increase by 13 percent for the lower emissions scenario and by 15 percent for the higher emissions scenario. In fall, recharge is projected to diminish by 13 percent for the lower emissions scenario and by 24 percent for the higher emissions scenario. Although recharge is projected to change seasonally in the 21st century, mean annual recharge changes minimally. Soil moisture is projected to decrease in the 21st century from spring through fall because of increases in potential evapotranspiration, and in fall because of decreases in precipitation in addition to increases in potential evapotranspiration. By the late 21st century, soil moisture for the lower emissions scenario is expected to decrease by 11 percent in summer and 15 percent in fall, and for the higher emissions scenario, decrease by 23 percent for both seasons. These decreases in soil moisture during the growing season might have implications for agriculture in the study area. Predicted changes in the magnitude and seasonal distribution of recharge in the 21st century increase simulated base flows and groundwater levels in the winter months for both emission scenarios, but because of less recharge in the fall and less or about the same recharge in the preceding months of spring and summer, base flows and groundwater levels in the fall months decrease for both emission scenarios. October has the largest base flow and groundwater level decreases. By the late 21st century, base flows at the Chipuxet River in October are projected to decrease by 9 percent for the lower emissions scenario and 18 percent for the higher emissions scenario. For a headwater stream in the upland till with shorter groundwater-flow paths and lower storage properties in its drainage area, base flows in October are projected to diminish by 28 percent and 42 percent for the lower and higher emissions scenarios by the late 21st century. Groundwater level changes in the uplands show substantial decreases in fall, but because of the large storage capacity of stratified deposits, water levels change minimally in the valley. By the late 21st century, water levels in large areas of upland till deposits in October are projected to decrease by up to 2 feet for the lower emissions scenario, whereas large areas decrease by up to 5 feet, with small areas with decreases of as much as 10 feet, for the higher emissions scenario. For both emission scenarios, additional areas of till go dry in fall compared with the late 20th century. Thus projected changes in recharge in the 21st century might extend low flows and low water levels for the year later in fall and there might be more intermittent headwater streams compared with the late 20th century with corresponding implications to aquatic habitat. Finally, the size and location of the simulated areas contributing recharge to the production wells are minimally affected by climate change because mean annual recharge, which is used to determine the contributing areas to the production wells, is projected to change little in the 21st century.

Rhode Island

Using monitoring data to understand lake water quality trends in southwest Alaskan National Parks

Lakes are vital ecosystems in southwest Alaska, supporting Pacific salmon, wildlife, and people. In Katmai and Lake Clark National Parks and Preserves, lakes span diverse landscapes containing volcanic uplands, glacier-fed valleys, and tundra all of which combine to influence their temperature, water quality, and ability to support critical uses. As the regional climate shifts, our understanding of lake responses requires more than just measurements of the lake surface water. Through long-term sampling of lakes from the surface to deep waters, we track how the environment —shaped by weather, geology, and land cover—governs lake water quality, including temperature, dissolved oxygen, specific conductance, pH, and turbidity. These data help us understand and predict how lake water quality will change across seasons and landscapes, and what this will mean for lake ecology and the habitats fish and wildlife depend on. This work builds a foundation for predicting how Alaska’s lakes are changing and what that means for the ecosystems and communities they support.

Alaska

Flightless and post-molt survival and movements of female mallards molting in Klamath Basin

Flightless and post-molt survival and movements were studied during August-May, 2001-2002, 2002- 2003 and 2006-2007 for 181 adult female Mallards (Anas platyrhynchos). Birds were radiotagged just before or early in their flightless period on four wetlands that differed in size on Klamath Basin (KB) National Wildlife Refuge complex. Flightless survival varied among years but was higher on two larger than two smaller wetlands; 30-day survival ranged from 11% (SE = 6.5%) on a small wetland in 2006 to 93% (SE = 6.5%) on a large wetland in 2001, and averaged 76.8% (SE = 6.1%). Most flightless mortality was from avian botulism (64%) and predation (26%). Of the 81 radiotagged Mallards that did not die in KB, 80% moved to the Central Valley of California (CVCA) before 31 January, 16% wintered in unknown areas, and 4% remained in KB through 31 January. Mallards departed KB 21 August-13 January (average: 11 Nov 2001, 25 Oct 2002, 19 Nov 2006). Post-molt survival during August-March in KB (20.7%, SE = 6.3%) was lower than in CVCA during this (62.9%, SE = 10.1%) and an earlier study. Survival in KB was consistently high only for females that molted in large permanent marshes, and although the impact of poor survival of molting females on Mallard population dynamics is unknown, KB water management plans should be developed that maintain these habitats.

California, Oregon

Genetic and environmental indicators of climate change vulnerability for desert bighorn sheep

Assessments of organisms’ vulnerability to potential climatic shifts are increasingly common. Such assessments are often conducted at the species level and focused primarily on the magnitude of anticipated climate change (i.e., climate exposure). However, wildlife management would benefit from population-level assessments that also incorporate measures of local or regional potential for organismal adaptation to change. Estimates of genetic diversity, gene flow, and landscape connectivity can address this need and complement climate exposure estimates to establish management priorities at broad to local scales. We provide an example of this holistic approach for desert bighorn sheep ( Ovis canadensis nelsoni ) within and surrounding lands administered by the U.S. National Park Service. We used genetic and environmental data from 62 populations across the southwestern U.S. to delineate genetic structure, evaluate relationships between genetic diversity and isolation, and estimate relative climate vulnerability for populations as a function of five variables associated with species’ responses to climate change: genetic diversity, genetic isolation, geographic isolation, forward climate velocity within a population’s habitat patch (a measure of geographic movement rate required for an organism to maintain constant climate conditions), and maximum elevation within the habitat patch (a measure of current climate stress, as lower maximum elevation is associated with higher temperature, lower precipitation, and lower population persistence). Genetic structure analyses revealed a high-level division between populations in southeastern Utah and populations in the remainder of the study area, which were further differentiated into four lower-level genetic clusters. Genetic diversity decreased with population isolation, whereas genetic differentiation increased, but these patterns were stronger for native populations than for translocated populations. Populations exhibited large variation in predicted vulnerability across the study area with respect to all variables, but native populations occupying relatively intact landscapes, such as Death Valley and Grand Canyon national parks, had the lowest overall vulnerability. These results provide local and regional context for conservation and management decisions regarding bighorn populations in a changing climate. Our study further demonstrates how assessments combining multiple factors could allow a more integrated response, such as increasing efforts to maintain connectivity and thus potential for adaptation in areas experiencing rapid climate change.

Arizona, California, Nevada, Utah

Long-term impacts of exotic grazer removal on native shrub recovery, Santa Cruz Island, California

A combination of overgrazing and exotic species introduction has led to the degradation of habitats worldwide. It is often unclear whether removal of exotic ungulates will lead to the natural reestablishment of native plant communities without further management inputs. I describe here my return to sites on Santa Cruz Island, California, 12 years after initial sampling in order to gain a long-term view on native shrub reestablishment into exotic grasslands after exotic grazer removal. Santa Cruz Island was grazed by feral sheep and cattle for over a century; these exotic grazers were removed in the late 1980s and feral pigs were removed in 2005–2006. I resampled 5 sites on south-facing slopes in the Central Valley of the island to quantify native shrub cover, density, and size. Previous data suggested that one species, Eriogonum arborescens, would be able to naturally recruit in exotic grass–dominated areas. Native shrubs have shown a modest increase in cover over time, although more striking was a sharp increase in the amount of dead shrub cover and density. Recruitment events during high rainfall years probably led to the slight increase in Eriogonum cover between sampling periods. Recent drought periods, however, have probably increased mortality and otherwise slowed shrub reestablishment in these arid sites.

California

Investigation of the geology and hydrology of the Mogollon Highlands of central Arizona: a project of the Arizona Rural Watershed Initiative

The Mogollon Highlands of east central Arizona is a region of forested plateau and mountains, deep, sheerwalled canyons, and desert valleys. Known for its scenic beauty and characterized by a generally mild climate, the area, though still sparsely populated, attracts an increasing number of tourists and summer residents. Furthermore, the permanent population is expected to nearly double over the next 50 years. Consequently, there is increased pressure on the water resources of this area for several sometimes conflicting uses. Rational management of water resources is necessary to meet increased domestic requirements while ensuring an adequate supply of water for commercial and agricultural use, for Indian lands, and for preservation of valued environmental elements, including surface waters, riparian woodlands, forest and grassland areas, and wildlife and aquatic habitat. Such management requires an understanding of the relations among different components of the hydrologic system—recharge areas, surface flows, shallow aquifers, deep aquifers, discharge areas, and the regional ground-water flow system—and how each is affected by geology, climate, topography, and human use. The U.S. Geological Survey (USGS) is conducting an assessment of the hydrogeology of the Mogollon Highlands in cooperation with the Arizona Department of Water Resources. The study, funded through the State’s Rural Watershed Initiative program, is one of three assessments being conducted by the USGS. Assessments also are underway in the Upper-Middle Verde River watershed and on the Coconino Plateau. Each study has as its objectives: (1) the collection, compilation, and evaluation of all existing geologic, hydrologic, and related data pertaining to the study area and the creation of a data base that is readily accessible to the public and (2) developing an understanding of the hydrogeologic framework, which is the relation between geologic and hydrologic properties, that can be used for water-- resources management purposes and that will support the development of an interpretive and predictive model to estimate the effects of climate and water use on the sustainability of regional water resources. Although the three contiguous areas in north-central Arizona are being studied separately, a single data base is being constructed from which data on each area can be extracted separately.

Arizona

Identification of single nucleotide polymorphisms for use in a genetic stock identification system for greater white-fronted goose (Anser albifrons) subspecies wintering in California

California provides wintering habitat for most greater white-fronted geese ( Anser albifrons [GWFG]) in the Pacific Flyway and this population has rapidly increased since the 1980s. Increased harvest of GWFG wintering in California may prevent agricultural depredation while providing increased hunting opportunities. However, changes in harvest levels are unlikely to be uniform across the species because of the presence of multiple subspecies of GWFG in the Pacific Flyway, each with their own population distribution and trends. White-fronted geese in the Cook Inlet Basin of south-central Alaska, a potentially vulnerable subspecies (Tule goose, A. a. elgasi ), are among the geese that winter predominantly in the Sacramento Valley and Suisun and Napa marshes of north-central California. Efforts to limit sport harvest of Tule geese are complicated because although the subspecies is phenotypically larger and darker in color than other subspecies, they can be difficult to identify in the field and in hunter bag checks. To assist in an accurate assessment of Tule goose harvest, we used double-digest restriction site-associated deoxyribonucleic acid sequencing (ddRAD-seq) techniques to develop a genetic stock identification panel of single nucleotide polymorphisms (SNPs) to differentiate Tule geese from individuals belonging to other GWFG subspecies and populations that winter in California. Although the panel we developed was designed and tested for Fluidigm SNP-type technology, the ddRAD-seq sequences can be used to design SNP panels for use in other platforms.

Alaska, California

Feeding ecology of northern pintails and green-winged teal wintering in California

The feeding ecology of northern pintails (Anas acuta) and green-winged teal (A. crecca) was examined from October through February 1979-81 in 4 major seasonal marsh types in the Central Valley, California. The esophagi of 262 pintails contained 72.3% plant seeds and 27.7% animal matter. The esophagi of 173 green-winged teal contained 62.3% plant seeds and 37.6% animal matter. Swamp timothy (Heleochloa schoenoides) caryopses, chironomid midge larvae, and common barnyardgrass (Echinochloa crusgalli) caryopses formed >50% of the diet of both species. Both species were highly opportunistic and generally shifted their food habits seasonally to the most available foods. Animal matter increased seasonally in the diets of both and formed about 60% of the foods eaten during January and February compared to only about 8% in October and 17% in December. Both species used open water marsh habitats almost exclusively in daytime but they used densely vegetated marshes almost exclusively at night. Management recommendations based on the food habits and habitat use patterns of pintails and green-winged teal are offered.

Journal of Wildlife Management

Hydrologic analysis of the proposed Badger-Beaver Creeks artificial-recharge project: Morgan County, Colorado

A hydrologic analysis of the proposed Badger-Beaver Creeks artificial-recharge project in Morgan County, Colo., was made with the aid of three digital computer models: A canal-distribution model, a ground-water flow model, and a stream-aquifer model. Statistical summaries of probable diversions from the South Platte River based on a 27-year period of historical flows indicate that an average-annual diversion of 96,000 acre-feet and a median-annual diversion of 43,000 acre-feet would be available. Diversions would sustain water in ponds for waterfowl habitat for an average of about five months per year, with a miximum pond surface area of about 300 acres with the median diversions and a maximum pond surface area of about 1,250 acres at least one-half of the years with the historic diversions. If the annual diversion were 43,000 acre-feet, recharge to the two alluvial aquifers would raise water levels sufficiently to create flowing streams in the channels of Beaver and Badger Creeks while allowing an increase in current ground-water pumping. The only area of significant waterlogging would be along the proposed delivery canal on the west edge of Badger Creek valley. If the total water available were diverted, the aquifer system could not transmit the water fast enough to the irrigation areas to avoid considerable waterlogging in the recharge areas. The impact of the proposed project on the South Platte River basin would be minimal once the ground-water system attained steady-state conditions, but that may take decades with a uniform diversion of the 43,000 acre-feet annually.

Colorado

Geology and mineral resources of the North-Central Montana Sagebrush Focal Area: Chapter D in Mineral resources of the Sagebrush Focal Areas of Idaho, Montana, Nevada, Oregon, Utah, and Wyoming

Summary The U.S. Department of the Interior has proposed to withdraw approximately 10 million acres of Federal lands from mineral entry (subject to valid existing rights) from 12 million acres of lands defined as Sagebrush Focal Areas (SFAs) in Idaho, Montana, Nevada, Oregon, Utah, and Wyoming (for further discussion on the lands involved see Scientific Investigations Report 2016–5089–A). The purpose of the proposed action is to protect the greater sage-grouse ( Centrocercus urophasianus ) and its habitat from potential adverse effects of locatable mineral exploration and mining. The U.S. Geological Survey Sagebrush Mineral-Resource Assessment (SaMiRA) project was initiated in November 2015 and supported by the Bureau of Land Management to (1) assess locatable mineral-resource potential and (2) to describe leasable and salable mineral resources for the seven SFAs and Nevada additions. This chapter summarizes the current status of locatable, leasable, and salable mineral commodities and assesses the potential of locatable minerals in the North-Central Montana SFA. The proposed withdrawal area that is evaluated in this report is located in north-central Montana, and includes parts of Fergus, Petroleum, Phillips, and Valley Counties.

Montana

Food web conceptual model

This chapter describes a general model of food webs within tidal wetlands and represents how physical features of the wetland affect the structure and function of the food web. This conceptual model focuses on how the food web provides support for (or may reduce support for) threatened fish species. This model is part of a suite of conceptual models designed to guide monitoring of restoration sites throughout the San Francisco Estuary (SFE), but particularly within the Sacramento-San Joaquin Delta (Delta) and Suisun Marsh. The conceptual models have been developed based on the Delta Regional Ecosystem Restoration Implementation Plan (DRERIP) models, and are designed to aid in the identification and evaluation of monitoring metrics for tidal wetland restoration projects. Many tidal restoration sites in the Delta are being constructed to comply with environmental regulatory requirements associated with the operation of the Central Valley Project and State Water Project. These include the Biological Opinions for Delta Smelt (Hypomesus transpacificus) and salmonids (U.S. Fish and Wildlife Service 2008; National Marine Fisheries Service 2009), and the Incidental Take Permit for Longfin Smelt (Spirinchus thaleichthyes) (California Department of Fish and Wildlife 2009). These regulatory requirements are based on the hypothesis that the decline of listed fish species is due in part to a decline in productivity of the food web (phytoplankton and zooplankton in particular) or alterations in the food web such that production is consumed by other species in the Estuary (Sommer et al. 2007; Baxter et al. 2010; Brown et al. 2016a). Intertidal wetlands and shallow subtidal habitat can be highly productive, so restoring areas of tidal wetlands may result in a net increase in productivity that will provide food web support for these fish species. However, other factors such as invasive bivalves that reduce phytoplankton and zooplankton biomass and invasive predatory fishes that may compete with or prey upon listed fishes can limit the utility of tidal wetlands for food web support (Lucas and Thompson 2012; Herbold et al. 2014). This model utilizes information from the previous DRERIP models for Delta food webs (Durand 2008) and tidal wetlands (Kneib et al. 2008), an updated DRERIP model (Durand 2015), and the State of BayDelta Science 2016 review of recent Delta food web literature (Brown et al. 2016a).

Interagency Ecological Program Technical Report

Estimation of the effects of land use and groundwater withdrawals on streamflow for the Pomperaug River, Connecticut

A precipitation runoff model for the Pomperaug River watershed, Connecticut was developed to address issues of concern including the effect of development on streamflow and groundwater recharge, and the implications of water withdrawals on streamflow. The model was parameterized using a strategy that requires a minimum of calibration and optimization by establishing basic relations between the parameter value and physical characteristics of individual hydrologic response units (HRUs) that comprise the model. The strategy was devised so that the information needed can be obtained from Geographic Information System and other general databases for Connecticut. Simulation of groundwater recharge enabled evaluation of the temporal and spatial mapping of recharge variation across the watershed and the spatial effects of changes in land cover on base flow and surface runoff. The modeling indicated that over the course of a year, groundwater provides between 60 and 70 percent of flow in the Pomperaug River; the remainder is generated by more rapid flow through the shallow subsurface and runoff from impermeable surfaces and saturated ground. Groundwater is recharged primarily during periods of low evapotranspiration in the winter, spring, and fall. The largest amount of recharge occurs in the spring in response to snowmelt. During floods, the Weekeepeemee and Nonnewaug Rivers (tributaries that form the Pomperaug River) respond rapidly with little flood peak attenuation due to flood-plain storage. In the Pomperaug River, flood-plain storage is more important in attenuating floods; abandoned quarry ponds (O&G ponds) adjacent to the river provide substantial flood storage above specific river stages when flow from the river spills over the banks and fills the ponds. Discharge from the ponds also helps to sustain low flows in the Pomperaug River. Similarly, releases from the Bronson-Lockwood reservoir sustain flow in the Nonnewaug River and tend to offset the effect of groundwater withdrawals from a well field adjacent to the river during periods of natural low flow. The model indicated that under the current zoning, future development could reduce low flows by as much as 10 percent at the 99 percent exceedance level (99 percent of flows are greater than or equal to this flow), but would not substantially increase the highest flows. Simulation of projected and hypothetical development in the watershed shows, depending on how stormwater is managed, that between 10 and 20 percent effective impervious area in an HRU results in streamflow becoming dominated by the surface-runoff component. This shift from a groundwater-dominated system would likely result in substantial changes in water quality and instream habitat characteristics of the river. Base flow to streams in the Pomperaug River watershed is reduced by both increased impervious surface and increased groundwater withdrawals. For the watershed as a whole, increasing groundwater withdrawals have the potential for causing greater overall reductions in flow compared to increased development and impervious surfaces. Additionally, on the basis of groundwater-modeling simulations, the projected increase in development across the watershed and, to a lesser extent the increase in groundwater withdrawals, will increase the number of local losing reaches experiencing dry conditions and the duration of these dry periods. The location of the losing reaches tends to be in areas near the transition from the uplands to the valley bottoms that are filled with coarse glacial stratified deposits. The simulated increase in the duration and extent of localized dry stream reaches is most sensitive to local increase in impervious surface. Conversion of land from forest or developed land cover to pasture or agricultural land increases groundwater recharge and discharge to streams, while at the same time increasing overall streamflow (the opposite effect as increased impervious surface). These resu

Scientific Investigations Report

Effects of historical climate change, habitat connectivity, and vicariance on genetic structure and diversity across the range of the Red Tree Vole (Phenacomys longicaudus) in the Pacific Northwest United States

Phylogeographical analyses conducted in the Pacific Northwestern United States have often revealed concordant patterns of genetic diversity among taxa. These studies demonstrate distinct North/South genetic discontinuities that have been attributed to Pleistocene glaciation. We examined phylogeographical patterns of red tree voles (Phenacomys longicaudus) in western Oregon by analysing mitochondrial control region sequences for 169 individuals from 18 areas across the species' range. Cytochrome b sequences were also analysed from a subset of our samples to confirm the presence of major haplotype groups. Phylogenetic network analyses suggested the presence of two haplotype groups corresponding to northern and southern regions of P. longicaudus' range. Spatial genetic analyses (samova and Genetic Landscape Shapes) of control region sequences demonstrated a primary genetic discontinuity separating northern and southern sampling areas, while a secondary discontinuity separated northern sampling areas into eastern and western groups divided by the Willamette Valley. The North/South discontinuity likely corresponds to a region of secondary contact between lineages rather than an overt barrier. Although the Cordilleran ice sheet (maximum a??12 000 years ago) did not move southward to directly affect the region occupied by P. longicaudus, climate change during glaciation fragmented the forest landscape that it inhabits. Signatures of historical fragmentation were reflected by positive associations between latitude and variables such as Tajima's D and patterns associated with location-specific alleles. Genetic distances between southern sampling areas were smaller, suggesting that forest fragmentation was reduced in southern vs. northern regions.

Molecular Ecology