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USGS invasive carp database management and integration support

Invasive carp tracking, monitoring, and contracted removal will continue throughout the Illinois River and upper Mississippi River as part of an adaptive management effort to mitigate, control, and contain invasive carp. To facilitate these actions, a need to compile and analyze invasive carp-related data from all agencies exists. Invasive carp-related data include all data sources that could inform the MRWG objectives or projects. This data, often in disparate formats, must be integrated into a common format that allows all agencies the opportunity to assess invasive carp monitoring, control, and removal efforts. Ensuring the interoperability of these datasets allows for their use in various analyses and modeling efforts. Implementing an interoperable data management framework provides mechanisms for endusers to find and use integrated data. Integrating data for use in modeling and analysis furthers the partnership’s collective understanding of invasive carp life history, distribution, and movement and can be used to facilitate adaptive management actions (e.g., directing monitoring, sampling, and removal efforts; assessing invasive carp abundance to support modeling efforts; informing deployment of control actions; etc.). An effective data management strategy will streamline the data update process, providing all agencies with timely data and analyses in support of informed decision-making processes.

Interim Summary Report

Evaluation of Caspian tern ( Hydroprogne caspia ) and snowy plover ( Charadrius alexandrinus nivosus ) nesting on modified islands at the Don Edwards San Francisco Bay National Wildlife Refuge, California—2016 Annual Report

Executive Summary In order to address the 2008/10 and Supplemental 2014 NOAA Fisheries Biological Opinion for operation of the Federal Columbia River Power System, the U.S. Army Corps of Engineers (USACE) and the Bureau of Reclamation (Reclamation) developed and have begun implementation of Caspian tern ( Hydroprogne caspia ) management plans. This implementation includes redistribution of the Caspian terns in the Columbia River estuary and the mid-Columbia River region to reduce predation on salmonids listed under the Endangered Species Act. Key elements of the plans include (1) reducing nesting habitat for Caspian terns in the Columbia River estuary and the mid-Columbia River region, and (2) creating or modifying nesting habitat at alternative sites within the Caspian tern breeding range. USACE and Reclamation developed Caspian tern nesting habitat at the U.S. Fish and Wildlife Service Don Edwards San Francisco Bay National Wildlife Refuge (DENWR), California, prior to the 2015 nesting season. Furthermore, to reduce or eliminate potential conflicts between nesting Caspian terns and threatened western snowy plovers ( Charadrius alexandrinus nivosus), nesting habitat for snowy plovers also was developed. Seven recently constructed islands within two managed ponds (Ponds A16 and SF2) of DENWR were modified to provide habitat attractive to nesting Caspian terns (5 islands) and snowy plovers (2 islands). These 7 islands were a subset of 46 islands recently constructed in Ponds A16 and SF2 to provide waterbird nesting habitat as part of the South Bay Salt Pond (SBSP) Restoration Project. We used social attraction methods (decoys and electronic call systems) to attract Caspian terns and snowy plovers to these seven modified islands, and conducted surveys between March and September of 2015 and 2016 to evaluate nest numbers, nest density, and productivity. Results from the 2015 nesting season, the first year of the study, indicated that island modifications and social attraction measures were successful in establishing Caspian tern breeding colonies at Ponds A16 and SF2 of DENWR. The success of 2015 continued in 2016, the second year of the study. In 2016, Caspian terns nested on two of the five islands modified for Caspian terns (one island in Pond A16 and one island in Pond SF2). Caspian terns initiated at least 317 nests, fledged at least 158 chicks, and had a breeding success rate of 0.50 fledged chicks per breeding pair. This represents a 42 percent increase in nests initiated, a 9 percent decrease in the number of fledged chicks, and a 36 percent decrease in the number of chicks fledged per breeding pair in 2016 compared to 2015. Although overall productivity decreased from 2015, these results indicate that the Caspian tern breeding population on modified islands of the DENWR is increasing relative to 2015, the first year of the effort, and relative to years prior to 2015 when no breeding colonies of Caspian terns existed in Ponds A16 or SF2. These results indicate the effectiveness of social attraction measures in helping to establish tern nesting colonies in San Francisco Bay. Conversely, for the second year in a row, snowy plovers did not attempt to nest on any island in Ponds A16 and SF2. Social attraction measures similar to those used in this study, but targeting other colonial species such as Forster’s terns ( Sterna forsteri ) and American avocets ( Recurvirostra americana ), may help to establish waterbird breeding colonies at wetlands enhanced as part of the SBSP Restoration Project.

California

Impacts of climate change on biodiversity, ecosystems, and ecosystem services: technical input to the 2013 National Climate Assessment

Ecosystems, and the biodiversity and services they support, are intrinsically dependent on climate. During the twentieth century, climate change has had documented impacts on ecological systems, and impacts are expected to increase as climate change continues and perhaps even accelerates. This technical input to the National Climate Assessment synthesizes our scientific understanding of the way climate change is affecting biodiversity, ecosystems, ecosystem services, and what strategies might be employed to decrease current and future risks. Building on past assessments of how climate change and other stressors are affecting ecosystems in the United States and around the world, we approach the subject from several different perspectives. First, we review the observed and projected impacts on biodiversity, with a focus on genes, species, and assemblages of species. Next, we examine how climate change is affecting ecosystem structural elements—such as biomass, architecture, and heterogeneity—and functions—specifically, as related to the fluxes of energy and matter. People experience climate change impacts on biodiversity and ecosystems as changes in ecosystem services; people depend on ecosystems for resources that are harvested, their role in regulating the movement of materials and disturbances, and their recreational, cultural, and aesthetic value. Thus, we review newly emerging research to determine how human activities and a changing climate are likely to alter the delivery of these ecosystem services. This technical input also examines two cross-cutting topics. First, we recognize that climate change is happening against the backdrop of a wide range of other environmental and anthropogenic stressors, many of which have caused dramatic ecosystem degradation already. This broader range of stressors interacts with climate change, and complicates our abilities to predict and manage the impacts on biodiversity, ecosystems, and the services they support. The second cross-cutting topic is the rapidly advancing field of climate adaptation, where there has been significant progress in developing the conceptual framework, planning approaches, and strategies for safeguarding biodiversity and other ecological resources. At the same time, ecosystem-based adaptation is becoming more prominent as a way to utilize ecosystem services to help human systems adapt to climate change. In this summary, we present key findings of the technical input, focusing on themes that can be found throughout the report. Thus, this summary takes a more integrated look at the question of how climate change is affecting our ecological resources, the implications for humans, and possible response strategies. This integrated approach better reflects the impacts of climate in the real world, where changes in ecosystem structure or function will alter the viability of different species and the efficacy of ecosystem services. Likewise, adaptation to climate change will simultaneously address a range of conservation goals. Case studies are used to illustrate this complete picture throughout the report; a snapshot of one case study, 2011 Las Conchas, New Mexico Fire , is included in this summary.

Report

USGS telemetry project

Tagging bigheaded carp (i.e., Bighead Carp and Silver Carp) and surrogate fish species with acoustic transmitters has become an invaluable management tool in the Upper IWW (i.e., upper Illinois River, lower Des Plaines River, and the CAWS). For example, movement probabilities between adjacent navigation pools need to be estimated to parameterize models, such as the SEICarP Model—a population model used in scenario planning by the MRWG to evaluate alternative management actions (Kallis et al. 2023). These movement probabilities are estimated from the telemetry data obtained from a longitudinal network of strategically placed receivers that detect bigheaded carp that have been implanted with acoustic transmitters (i.e., tagged). In addition, fish removal by contracted fishers has become the primary method of controlling bigheaded carp in the upper Illinois and lower Des Plaines rivers. Variable patterns in bigheaded carp distribution, habitat, and movement, influenced by seasonal and environmental conditions, make targeting bigheaded carp for removal and containment challenging and costly. Understanding these movement patterns for bigheaded carp through modeling and real-time telemetry applications informs removal efforts and facilitates monitoring and contingency actions based on fish movements.

Illinois

Vertical accretion versus elevational adjustment in UK saltmarshes: An evaluation of alternative methodologies

Simultaneous measurements of vertical accretion from marker horizons and marsh-elevation change from sedimentation-erosion tables (SET) were made in selected marshes along the East Anglian coast of the UK in order to address the following objectives: to ascertain the validity of treating accretion measurements obtained within tidally dominated, minerogenic saltmarshes as equivalent to surface elevation changes; to explore the implications, in terms of physical and biological processes, of discrepancies between separately measured vertical accretion and elevation change within contrasting marsh types. Data were collected from several marsh environments at Scolt Head Island and Stiffkey on the North Norfolk coast and at an experimental managed realignment project near Tollesbury, Essex. Scolt Head Island was selected for its long-term datasets of marsh accretion, Stiffkey for its contrasting open coast-back barrier settings, and Tollesbury for its experimental management, in order to illustrate the potential application of the SET method and evaluate the relationship between vertical accretion and elevation change in a variety of marsh settings. The relationship between vertical accretion and elevation change varied widely among marsh settings of different age and height (within the tidal frame) at Scolt Head Island and Stiffkey. Rates of vertical accretion and elevation change were similar in the older and mid-height settings on Scolt Head Island, indicating control of elevation change by surface accretionary processes (e.g. sediment deposition). However, subsurface processes controlled elevation at three of the marsh sites. Spartina Marsh, the youngest and lowest of the back barrier settings at Scolt Head Island, exhibited continuous shallow subsidence (vertical accretion greater than elevation change) over a 4-year period, implying that compaction controls elevation change. In the upper part of Hut Marsh and the interior of the Stiffkey marshes, elevation change exceeded vertical accretion suggesting that subsurface processes (e.g. organic accumulation) controlled elevation in these settings. Surface accretionary processes control elevation change in both the highly dynamic, outer marsh at Stiffkey and the low, restored marsh at Tollesbury. Despite the occurrence of shallow subsidence, all sites gained elevation at an annual rate comparable to that of sea-level rise. In summary, the SET provides the means to critically evaluate the influence of vertical accretion measures on elevation and represents an improved method by which to evaluate the vulnerability of a marsh to sea-level rise.

Scolt Head Island Marsh, Stiffkey Marsh, Tollesbur

U.S. Geological Survey Subsidence Interest Group conference, Edwards Air Force Base, Antelope Valley, California, November 18-19, 1992; Abstracts and summary

Land subsidence, the loss of surface elevation as a result of the removal of subsurface support, affects every state in the United States. More than 17,000 mi 2 of land in the United States has been lowered by the various processes that produce land subsidence with annual costs from resulting flooding and structural damage that exceed $125 million. It is estimated that an additional $400 million is spent nationwide in attempts to control subsidence. Common causes of land subsidence include the removal of oil, gas, and water from underground reservoirs; dissolution of limestone aquifers (sinkholes); underground mining activities; drainage of organic soils; and hydrocompaction (the initial wetting of dry soils). Overdrafting of aquifers is the major cause of areally extensive land subsidence, and as ground-water pumping increases, land subsidence also will increase. Land subsidence and its effects on engineering structures have been recognized for centuries, but it was not until this century that the processes that produce land subsidence were identified and understood. In 1928, while working with field data from a test of the Dakota Sandstone aquifer, O.E. Meinzer of the U.S. Geological Survey recognized the compressibility of aquifers. Around the same time, Karl Terzaghi, a soil scientist working at Harvard University, developed the one-dimensional consolidation theory that provided a quantitative means of predicting soil compaction resulting from the drainage of compressible soils. Thus, with the recognition of the compressibility of aquifers (Meinzer), and the development of a quantitative means of predicting soil compaction as a consequence of the reduction of intergranular pore pressure (Terzaghi), the theory of aquifer-system compaction was formed. With the widespread availability of electric power in rural areas, and the advent of the deep turbine pump, ground-water withdrawals increased dramatically throughout the country in the 1940's and 1950's. Along with this unprecedented increase in pumpage, substantial amounts of land subsidence were observed in several areas of the United States, most notably in Arizona, California, and Texas. Beginning in 1955, under the direction of Joseph Poland, the Geological Survey began the "Mechanics of Aquifers Project," which focused largely on the processes that resulted in land subsidence due to the withdrawal of ground water. This research team gained international renown as they advanced the scientific understanding of aquifer mechanics and land-subsidence theory. The results of field studies by members of this research group not only verified the validity of the application of Terzaghi's consolidation theory to compressible aquifers, but they also provided definitions, methods of quantification, and confirmation of the interrelation among hydraulic head declines, aquifer-system compaction, and land subsidence. In addition to conducting pioneering research, this group also formed a "center of expertise," providing a focal point within the Geological Survey for the dissemination of technology and scientific understanding in aquifer mechanics. However, when the "Mechanics of Aquifers Project" was phased out in 1984, the focal point for technology transfer no longer existed. Interest among various state and local agencies in land subsidence has persisted, and the Geological Survey has continued to participate in a broad spectrum of cooperative and Federally funded projects in aquifer mechanics and land subsidence. These projects are designed to identify and monitor areas with the potential for land subsidence, to conduct basic research in the processes that control land subsidence and the development of earth fissures, as well as to develop new quantitative tools to predict aquifer-system deformation. In 1989 an ad hoc "Aquifer Mechanics and Subsidence Interest Group" (referred to herein as the "Subsidence Interest Group") was formed

California

Water-resources-related information for the Milwaukee Metropolitan Sewerage District planning area, Wisconsin, 1970-2002

The Milwaukee Metropolitan Sewerage District (MMSD) Corridor Study is a three-phase project designed to improve the understanding of water resources in the stream corridors of the MMSD planning area by initially compiling existing data and using the compiled information to develop 3-year baseline and long-term monitoring plans. This report is one of the products of Phase I of the Corridor Study. A literature review of surface-water-quality, surface water- quantity, and ecology studies conducted from 1970 through 2001 was completed and is summarized in this report. An inventory of Geographic Information System spatial coverages available for the MMSD planning area has been assembled. A database of water, sediment, and tissue (fish, shellfish, and others) chemistry, macroinvertebrates, fish, algae, habitat, geomorphic, and other physical and ecological data was compiled from data sets from MMSD, U.S. Geological Survey, Wisconsin Department of Natural Resources, and the U.S. Environmental Protection Agency. More than 2.7 million results are available in the MMSD Corridor Study database and the compilation of multiple datasets allows for retrieving data from a central database rather than from each of the source datasets. Data for 1970 through 2002 were collected for the 420-square-mile planning area by various agencies using different field data-collection and laboratory analysis methods. Chemical constituents and ecological components that are important to an urban setting and well represented in the database were selected for further investigation. Each constituent or component is described in this report with some or all of the following: a text summary, map of sampling locations, and in some cases median concentrations, statistical distributions of concentrations by subwatershed, table of summary statistics by subwatershed, and graphs of temporal and (or) seasonal trends. Physical data presented in the report include streamflow, stream stage, and precipitation data. Chemical indicators of water quality presented in the report include field measurements and miscellaneous constituents (pH, alkalinity, specific conductance, hardness, dissolved oxygen, biochemical oxygen demand, and chloride), sediment (total suspended solids and suspended sediment), nutrients (total nitrogen, nitrate, Kjeldahl nitrogen, total phosphorus, and dissolved phosphorus), trace elements (cadmium, mercury, copper, lead, arsenic, chromium, nickel, and zinc), pesticides (historically used pesticides and pesticides still in use), and polychlorinated biphenyls. Ecological indicators of water quality discussed in the report include community surveys of macroinvertebrates and fish, chlorophyll a concentrations, habitat assessments and channel-measurement data, and fecal coliform and E. coli bacterial counts. In addition to the compilation of the database, a major purpose of this investigation was to identify additional sampling that should be conducted under the baseline monitoring phase, which will be the second phase of the Corridor Study. Additional sampling may include: • Some subwatersheds, such as those in the headwaters. • Emerging contaminants such as pharmaceuticals and personal care products (PPCPs), human hormones, organic wastewater contaminants, and other constituents that result from human activity. • E. coli, which can serve as an indicator of health risk to swimmers and other recreational water users. • Pesticides in all media. • PCBs. • Trace elements in water, bed sediment, and tissues (fish, shellfish, and others). • Samples during winter months or during early snowmelt episodes to address constituents such as chloride and some nutrients that have seasonal variability and that may be affected by factors such as road deicing during the winter. • Samples for macroinvertebrate and fish-community data and habitat assessments. • Physical data such as stream-channel cross-section profiles, bridge-scour assessments, flood-plain maps, structures, and shoreline conditions.

Wisconsin

U-Pb Zircon ages from bedrock samples collected in the Tanacross D-1, and parts of the D-2, C-1, and C-2 quadrangles, Alaska

This Alaska Division of Geological & Geophysical Surveys (DGGS) Preliminary Interpretive Report presents U-Pb ages of zircons from 14 sedimentary, metamorphic, and igneous samples collected during 2017 and 2018 field investigations in the northeastern Tanacross Quadrangle, Alaska. The DGGS Northeast Tanacross project is a part of multi-year effort to investigate the geology and mineral-resource potential of the Yukon-Tanana Uplands region in collaboration with the U.S. Geological Survey. The purpose of the U-Pb isotopic study is to better understand the Devonian-to-Mississippian and Mesozoic-to-Early Paleogene episodes of magmatic and tectonic events within the Yukon-Tanana Uplands and the relationship of magmatism to the metallic mineral deposits. This area is characterized by the presence of two Late Devonian to Mississippian metamorphic assemblages-Lake George and Fortymile River (Dusel-Bacon and others, 2006; Foster, 1970). Both assemblages are composed of metasedimentary and metavolcanic rocks that have been intruded by Devonian to Eocene intrusive rocks of varying composition and texture. Paleozoic intrusive rocks are deformed and metamorphosed and include prevalent Late Devonian-Early Mississippian augen orthogneiss, herein called the Divide Mountain suite, that was emplaced into and deformed together with the Lake George assemblage (Aleinikoff and others, 1986). The Fortymile River assemblage is primarily cross-cut by Mississippian to Permian intrusive rocks that are also pervasively deformed and metamorphosed. Following Jurassic to mid-Cretaceous regional metamorphism and deformation, all metamorphic rock packages were intruded by Mid- to Late-Cretaceous volcanic and plutonic rocks (Naibert and others, 2018), some of which have known or suspected potential for gold together with silver, zinc, copper, and lead mineralization. Products included in this data release are: A summary of sample-collection methods, the laboratory report, analytical data tables, and associated metadata. All components of this data release are available on the DGGS website http://doi.org/10.14509/30465 .

Alaska

Test holes drilled in support of ground-water investigations, Project Gnome, Eddy County, New Mexico

Project Gnome is a proposed underground nuclear shot to be detonated within a massive salt bed in Eddy County, N. Mex. Potable and neat potable ground water is present in rocks above the salt and is being studied in relation to this nuclear event. This report presents details of two test holes which were drilled to determine ground-water conditions in the near vicinity of the shot point. A well-defined aquifer is present at the site of USGS test hole 1, about 1,000 feet south of the access shaft to the underground shot point. Water with 75 feet of artesian pressure head is contained in the Culebra dolomite member of the Rustler formation. The dolomite aquifer is 32 feet thick and its top lies at a depth of 517 feet below land surface. The aquifer yielded 100 gpm (gallons per minute) with a drawdown of 40 feet during a pumping period of 24 hours. Water was not found in rocks above or below the Culebra dolomite. At the site of USGS test hole 2, about 2 miles southwest of the access shaft no distinctive aquifer exists. About one-half gpm was yielded to the well from the rocks between the Culebra dolomite and the top of the salt. Water could not be detected in the Culebra dolomite or overlying rocks. The report contains drawdown and recovery curves of yield tests, drilling-time charts, and electric logs. The data are given in tables; they include summaries of hole construction, sample description logs, water measurements, drilling-time logs, and water analyses.

Open-File Report

U.S.-Soviet Collaborative Geological and Geophysical Survey of the Mid-Atlantic Ridge near 31 degrees N, the Petrov Fracture Zone

Introduction In February 1989, the first formal U.S.-Soviet joint marine geologic-geophysical study in 10 years was undertaken along the Mid-Atlantic Ridge near 31°N on the 12th Cruise of the RN Akademik Boris Petrov of the Vernadsky Institute of Geochemistry (USSR Academy of Sciences, Moscow). This survey was initiated as part of the U.S.S.R.-U.S. cooperative research project "Mid-Atlantic Ridge Crest Processes" within the framework of the Soviet-U.S. bilateral Ocean Studies Agreement (Ostenso, 1989). U.S. scientists from the U.S. Geological Survey, University of Houston, and Woods Hole Oceanographic Institution participated in this program with Soviet scientists from the Vernadsky Institute of Geochemistry, Institute of Geology, and Schmidt Institute of Physics of the Earth, all institutes of the USSR Academy of Sciences in Moscow (Appendix 1 ). The ship departed from Rotterdam, Nederlands on February 2, 1989 and docked in Bridgetown, Barbados on February 28, 1989. A log of the ship's schedule during this cruise is given in Appendix 2. This study involved a limited multibeam-bathymetric, gravity, magnetic, and seismic- reflection survey. and dredging program of a short-offset transform fault named the Petrov Fracture Zone near 31 °N, located just north of the Atlantis Fracture Zone on the Mid Atlantic Ridge. A site survey at King's Trough in the northeast Atlantic for a MIR submersible program in June 1989 was originally planned as part of this program, but bad weather and the resultant poor quality geophysical data forced this work to be terminated after only one day. Nearly 6000 km of geophysical profile data and 13 dredge stations were completed during this cruise. A description of the geophysical systems aboard the RN Petrov is given in Appendices 3 and 4. All geophysical data were recorded on magnetic tape in data formats described in Appendix 5. Dredge locales and description summaries only are presented in Appendix 6. Detailed descriptions of dredge samples will be presented elsewhere. Operational plan for the studies on this cruise was developed as a cooperative effort between U.S. and Soviet scientists, who established jointly the basic objectives of the study. The U.S. scientists were given the responsibility for developing the detailed survey and dredge sampling plans. Dredge operations and basic geophysical systems operations were the responsibility of the Soviet personnel.

Open-File Report

Summary of climatic, geographic, geologic, and available hydrologic data and identification of data gaps for the Black Bear Creek watershed of the Pawnee Nation Tribal Jurisdictional Area, Oklahoma

The Pawnee Nation is compiling a comprehensive water-management plan for the Pawnee Nation Tribal Jurisdictional Area in north-central Oklahoma. One of the first steps needed in preparing such a plan is a summary and analysis of available hydrologic data and reports that have been published for the area. In phase I of a three-phase, watershed-based approach to summary and analysis of water resources of the Pawnee Nation, the U.S. Geological Survey, in cooperation with the Pawnee Nation and Bureau of Indian Affairs, conducted a literature search and data analysis for the Black Bear Creek watershed within the Pawnee Nation Tribal Jurisdictional Area, referred to herein as the “Black Bear Creek study area.” This report summarizes the available data for the Black Bear Creek study area. Climatic, geographic, geologic, water-use, and hydrologic data from previously published reports or databases were collected and analyzed for this report. Because of the limited amount of groundwater-quality data for the study area, a field collection of groundwater levels and water samples was conducted. Sixteen wells were identified, and groundwater levels were measured at each well. Eight wells were sampled, and water properties, major ions, and nutrients were measured. Overall, there are few long-term monitoring stations to help determine trends of surface-water quality, groundwater quality, and groundwater levels across the study area. Establishing and maintaining long-term streamflow, surface-water-quality, groundwater-level, and groundwater-quality monitoring sites would greatly increase the understanding of the water resources in the Black Bear Creek study area. Additionally, water-use estimates would be greatly improved by metering groundwater withdrawals. Establishing hydrologic and water-quality trends and having improved estimates of water use can aid decision makers in the stewardship of the water resources in this area. This report can aid the Pawnee Nation in prioritization of future projects and serve as a background document for the development of a jurisdiction-wide comprehensive water-management plan.

Oklahoma

U.S. Geological Survey Community for Data Integration 2017 Workshop Proceedings

Executive Summary The U.S. Geological Survey (USGS) Community for Data Integration (CDI) Workshop was held May 16–19, 2017 at the Denver Federal Center. There were 183 in-person attendees and 35 virtual attendees over four days. The theme of the workshop was “Enabling Integrated Science,” with the purpose of bringing together the community to discuss current topics, shared challenges, and steps forward to advance integrated science at the USGS. The CDI welcomed several keynote speakers, including Bill Werkheiser, USGS Acting Director; Kevin T. Gallagher, USGS Associate Director of the Core Science Systems Mission Area; Bruce Caron, Earth Science Information Partners Community Architect; and Tim Quinn, Chief of the USGS Office of Enterprise Information. Their presentations focused on the importance of collaborative, cross-disciplinary, and open science and the role of the CDI in identifying and supporting new opportunities in these areas for the USGS and its partners. In addition to the stated theme, the workshop agenda was driven by the needs of the CDI, with topics highlighting current resources and technologies that could help attendees in their daily work. Topical sessions were proposed by CDI members and included subjects such as data citation, information technology architecture, legacy data, real-time data, and many more. Plenary speakers from the community talked about USGS activities in data science, elevation and hydrography data integration, advanced scientific computing solutions, cloud computing, data-management training, and data-sharing agreements. Two panels addressed the role of the CDI in enabling integrated science and examples of CDI-supported projects in action. Breakout discussions focused on the workshop theme of “Enabling Integrated Science” and covered five topics: Data and Data Integration, Modeling, Computing Capacity, Science Data Integration, and User Needs and Experience. Sessions on each topic identified actions that could bring the USGS and the broader Earth science community closer to the goal of making integrated science commonplace. The breakouts produced recommendations with the broad themes of improving communication and connections across the USGS, reducing duplication and increasing knowledge transfer, increasing training and testbed opportunities to learn and experiment, and creating community-supported standards to enable better integration and interoperability. The DataBlast poster and live demonstration session showcased 36 projects from around the CDI and included recent CDI-funded projects as well as other USGS and partner initiatives that were related to data and software integration and discovery. Importantly, the CDI workshop provided a forum for scientists, technologists, data and resource managers, program managers, and others to convene face to face to discuss common methods, interests, challenges, and solutions related to scientific data and technologies. As a result of this rare convergence, new connections were made across disciplines, backgrounds, and geographical locations, seeding future activities and collaborations. Sharing of ideas from all attendees was encouraged through the use of a mobile application to collect real-time questions and feedback from the audience The primary outcomes of the workshop are the recommendations from the breakout sessions titled “Roadmap Discussions on Enabling Integrated Science” and from the topical sessions detailed in these proceedings. These sessions, as well as the plenary discussions, identified new areas of collaboration and learning that the CDI will facilitate, such as data science, software development, scientific modeling practices, and user needs and experience. The CDI will build on the results of the workshop to guide its future topics, events, and funding opportunities to support an integrated science capacity for the USGS.

Open-File Report

Summary of juvenile salmonid passage and survival at McNary Dam-Acoustic survival studies, 2006-09

Passage and survival data were collected at McNary Dam between 2006 and 2009. These data have provided critical information for resource managers to implement structural and operational changes designed to improve the survival of juvenile salmonids as they migrate past the dam. Given the importance of these annual studies, the primary objectives of this report were to summarize the findings of these annual studies to ensure that passage and survival metrics are consistently calculated and reported across all years and to consolidate this information in a single document, thereby making it easier to reference. It is worth noting that this report does not contain all the information from all the annual reports. The intent of this report was to summarize the key findings from multiple years of research. The reader is encouraged to reference the annual reports if more detailed information is needed. Chapter 1 summarizes existing behavior, passage, and survival results for fish released 10 rkm upstream of McNary Dam and from the McNary Dam tailrace during 2006-09. Chapter 2 summarizes existing behavior, passage, and survival results for fish released in the mid-Columbia River and detected at McNary Dam during 2006-09. Results from 2006 indicated that higher spill discharge generally resulted in higher fish passage through spill, and in turn, higher fish survival through the entire dam. Within the spillway, passage effectiveness was highest for the south spill bays, adjacent to the powerhouse. Increased passage in this area, combined with detailed 3-dimensional approach paths, aided in the design and location of the temporary spillway weirs (TSWs) at McNary Dam prior to the 2007 migration of juvenile salmonids. During the 2007 study, the TSWs were tested under two spill treatments during the spring and summer: a "2006 Modified spill," and a "2007 test spill." In the spring, slightly higher discharge through spill bays 14-17 was the primary difference between the spill treatments tested. During the summer, spill treatments were characterized by a high (60 percent) and low (40 percent) percent flow of the total discharge going through the spillway. Flow through the TSWs represented about 7-8 percent of total project discharge in spring and about 10-11 percent of total project discharge in summer. Overall, the TSWs passed 24 percent of yearling Chinook salmon and 27 percent of subyearling Chinook salmon, but passed about 65 percent of juvenile steelhead. In spring, there was little evidence for an effect of spill treatment on either fish passage or survival, however, this was not surprising given there was a relatively small difference between spill treatments. For subyearling Chinook salmon during the summer study, high spill discharge resulted in higher fish passage through the spillway and lower fish passage through the powerhouse. Season wide survival (paired-release) for yearling and subyearling Chinook salmon was 0.98 and 0.92 (SE<0.04) through TSW 20, and 0.96 and 0.97 (SE<0.04) through TSW 22, respectively. Season-wide survival (single-release) for juvenile steelhead was 0.98 (SE=0.024) through TSW 20, and 0.90 (SE=0.02) through TSW 22. The extent to which location and structural design contributed to the differences observed between the two TSWs was uncertain. Nonetheless, the TSWs performed similarly to surface-oriented fish passage structures at other locations and appear to be a useful fish passage alternative at McNary Dam. The 2008 and 2009 studies confirmed previous results showing high survival for fish passing through the TSWs, especially juvenile steelhead. Although the number of all fish species passing through the TSWs was lower in 2008 and 2009 compared to 2007, fish passage efficiency for juvenile steelhead and subyearling Chinook salmon was higher in years with the TSWs, compared to 2006, before the TSWs were in place.

Washington;Oregon

Archive of digital boomer subbottom profile data collected in the Atlantic Ocean offshore northeast Florida during USGS cruises 03FGS01 and 03FGS02 in September and October of 2003

In September and October of 2003, the U.S. Geological Survey (USGS), in cooperation with the Florida Geological Survey, conducted geophysical surveys of the Atlantic Ocean offshore northeast Florida from St. Augustine, Florida, to the Florida-Georgia border. This report serves as an archive of unprocessed digital boomer subbottom profile data, trackline maps, navigation files, Geographic Information System (GIS) files, Field Activity Collection System (FACS) logs, and formal Federal Geographic Data Committee (FGDC) metadata. Filtered and gained (a relative increase in signal amplitude) digital images of the seismic profiles are also provided. Refer to the Acronyms page for expansions of all acronyms and abbreviations used in this report. The USGS St. Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier to each cruise or field activity. For example, 03FGS01 tells us the data were collected in 2003 as part of cooperative work with the Florida Geological Survey (FGS) and that the data were collected during the first field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity identification (ID). The naming convention used for each seismic line is as follows: yye##a, where 'yy' are the last two digits of the year in which the data were collected, 'e' is a 1-letter abbreviation for the equipment type (for example, b for boomer), '##' is a 2-digit number representing a specific track, and 'a' is a letter representing the section of a line if recording was prematurely terminated or rerun for quality or acquisition problems. The boomer plate is an acoustic energy source that consists of capacitors charged to a high voltage and discharged through a transducer in the water. The transducer is towed on a sled floating on the water surface and when discharged emits a short acoustic pulse, or shot, which propagates through the water, sediment column, or rock beneath. The acoustic energy is reflected at density boundaries (such as the seafloor, sediment, or rock layers beneath the seafloor), detected by hydrophone receivers, and recorded by a PC-based seismic acquisition system. This process is repeated at timed intervals (for example, 0.5 seconds) and recorded for specific intervals of time (for example, 100 milliseconds). In this way, a two-dimensional (2-D) vertical profile of the shallow geologic structure beneath the ship track is produced. Refer to the handwritten FACS operation log (PDF, 442 KB) for diagrams and descriptions of acquisition geometry, which varied throughout the cruises. Table 1 displays a summary of acquisition parameters. See the digital FACS equipment logs (PDF, 9-13 KB each) for details about the acquisition equipment used. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG Y (Barry and others, 1975) format (rev. 0), except for the first 3,200 bytes of the card image header, which are stored in ASCII format instead of the standard EBCDIC format. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU) (Cohen and Stockwell, 2005). See the How To Download SEG Y Data page for download instructions. The printable profiles provided here are Graphics Interchange Format (GIF) images that were filtered and gained using SU software. Refer to the Software page for details about the processing and links to example SU processing scripts and USGS software for viewing the SEG Y files (Zihlman, 1992).

Florida;Georgia

National strategy for landslide loss reduction

Executive Summary Landslide hazards are present in all 50 States and most U.S. territories, and they affect lives, property, infrastructure, and the environment. Landslides are the downslope move­ment of earth materials under the force of gravity. They can occur without any obvious trigger. Widespread or severe land­slide events are often driven by such hazards as hurricanes, earthquakes, volcanic eruptions, heavy rain events, flooding, and wildfires. Landslides can also cause their own cascading consequences, such as the spread of hazardous materials or the creation of devastating local tsunamis. This strategy document describes goals and strategic actions of a comprehensive strategy to meet key challenges to reducing the Nation’s risk from landslide hazards equitably and effectively. The document follows the direction of the National Landslide Preparedness Act (Public Law 116–323) by presenting a strategy for addressing landslide hazards, including risk reduction and response. The act directs the Department of the Interior to establish a program that will work with State, Tribal, and local governments as well as with academia, the private sector, community-based groups, and nonprofit organizations to identify landslide hazards and risk and improve communication, coordination, and emergency preparedness, with the objective of reducing landslide losses. As the only Federal program dedicated to landslide hazard science, the U.S. Geological Survey’s Landslide Hazards Program will lead and coordinate many of the efforts described in this strategy document. Landslide hazard risk reduction must be undertaken collectively and collaboratively across the Federal Government. This strategy document will provide a framework for the creation of an interagency management plan that describes the programs, projects, workforce, and budgets required to carry out the national strategy. The strategy outlined in this document presents a vision of how to equitably produce, communicate, and apply landslide data and science to support a broad range of land management, infrastructure, planning, and emergency response decisions. These decisions are made by a variety of actors, including private and nonprofit landholders; State, Tribal, territorial, city, and county planners; emergency managers; engineers; infrastructure managers; Federal agencies and their partners; and community leaders and individuals. Supporting those decisions and reducing the Nation’s vulnerability to landslides requires overcoming three main challenges: (1) gaps in basic information needed to describe and understand landslide occurrence and societal risk, (2) difficulty in accurately mapping and forecasting landslide hazards, and (3) communication and coordination among the many jurisdictions and sectors that have responsi­bility for and interest in reducing landslide losses. To address those challenges, this strategy document puts forward a series of strategic actions to achieve four goals: Assess: Decision makers have access to detailed, nationwide, and contextually relevant information on land­slide hazard and risk. Coordinate: Landslide hazard mitigation, preparedness, response, and recovery efforts are coordinated across Federal, State, Tribal, territorial, and local levels. Plan: Communities and land managers are prepared and able to plan for landslide hazards. Respond: Landslide surveillance, warnings, and responses to events are effective, efficient, equitable, coopera­tive, and data-driven to protect lives, property, infrastructure, and the environment. These strategic actions focus on expanding the knowl­edge of societal risk posed by landslides as well as better understanding of where, when, and why they occur. They focus on applying that knowledge to support landslide risk reduction efforts and decisions, including the establishment of new advisory, coordination, and working groups focused on landslide hazard and risk. They take into account that supporting landslide loss reduction decisions also requires new guidance, tools, and training codeveloped with the entities, organizations, and individuals faced with making those decisions. Finally, they address actions needed to support and expand landslide warning information and improve the technical response to landslide emergencies.

Open-File Report

Perceptions of conservation introduction to inform decision support among U.S. Fish and Wildlife Service employees

Executive Summary Around the globe, fish and wildlife managers are facing increasingly complex management issues because of multiscale ecological effects like climate change, species invasion, and land-use change. Managers seeking to prevent extinctions or preserve ecosystems are increasingly considering more interventionist techniques to overcome the resulting changes. Among those techniques, translocation methods that intentionally move species into new, less impacted habitats are being considered. These types of translocations are known by a range of terms, including “managed relocation” and “assisted migration,” but the International Union for the Conservation of Nature’s Species Survival Commission (IUCN SSC, 2013) has proposed “conservation introduction” (CI) as a standard term. As defined by the IUCN SSC, CI is the intentional movement of a species or population outside its indigenous range for conservation purposes. CI can be divided into two forms: assisted colonization and ecological replacement. Assisted colonization is moving species outside its indigenous range to prevent extinction or extirpation of a population. Ecological replacement is moving species to fulfill an important niche that is necessary within an ecosystem. Proponents suggest these methods are necessary to address the ecological challenges managers are trying to overcome. Opponents point out the potential for species to become invasive, introduce disease or parasites, and cause other cascading impacts throughout the ecosystem. The result is controversy and disagreement. As such, it will be imperative to develop clear guidelines and best practices to be followed within wildlife management agencies to prevent potential To this end, the U.S. Fish and Wildlife Service (USFWS) partnered with the U.S. Geological Survey (USGS) to develop the current project. The intent was to describe the perceptions of USFWS personnel across many aspects of CI so that the USFWS could use this information in the planning and development of their own internal decision-support framework for CI. This report is presented in five sections. Section 1 introduces the project and provides an in-depth overview of background literature related to CI. Section 2 describes the study design, methods, and study participant characteristics. Section 3 describes key results and recommendations related to the development of a USFWS decision framework. Section 4 investigates a range of perceptions held by participants and establishes baseline information for how USFWS personnel may view CI and its application. Types of viewpoints surveyed include preferred terms and definitions, perceived barriers, perceived risks and tradeoffs, and aspects of success. Perceived barriers refers to factors that may prevent successful implementation of CI and perceived risks refers to potential negative outcomes that may occur as a result of implementing CI. Section 5 provides an overview of our conclusions for this project. Overall, we found that CI is likely to be viewed positively within the USFWS, but employees offered cautions and caveats. Most participants we interviewed feel that it is a necessary tool that will be indispensable in certain situations but also feel that there is more risk associated than with more traditional methods. For this reason, many participants are concerned about the assessment and planning that should be conducted prior to any CI effort. Our results indicate that many USFWS personnel will be open to CI being adopted more regularly but will be looking for clear guidance on how it should be implemented.

Scientific Investigations Report

Antarctica: A Keystone in a Changing World--Online Proceedings for the Tenth International Symposium on Antarctic Earth Sciences. Santa Barbara, California, U.S.A.--August 26 to September 1, 2007

Overview: The International Symposium on Antarctic Earth Sciences (ISAES) is held once every four years to provide an international forum for presenting research results and new ideas and for planning future Antarctic geoscience research projects. This Tenth ISAES coincides with the International Polar Year (IPY; 50th Anniversary of the International Geophysical Year) and has been structured to showcase the great breadth of geoscience research being done in Antarctic regions by more than more than 100 institutions located in over 30 countries. The science program of the Symposium encompasses six broad themes that cover key topics on evolution and interactions of the geosphere, cryosphere and biosphere and their cross-linkages with past and historic paleoclimates. Emphasis is also on deciphering the climate records in ice cores, geologic cores, rock outcrops and those inferred from climate models. New technologies for the coming decades of geoscience data collection are also highlighted. Ten keynote presentations at the symposium outline the foundation for the research sessions of the symposium and the structure of the Online Proceedings and Proceedings Book for the Tenth ISAES. The ISAES is traditionally a cornerstone meeting for the Scientific Committee on Antarctic Research (SCAR). In recognition of the Tenth ISAES being held in the U.S. for the first time in 30 years and during IPY, the publication of the symposium proceedings is being handled as a special collaborative effort of the U.S. National Science Foundation, the U.S. Geological Survey, The National Academies Polar Research Board and The National Academies Press. The National Academies Polar Research Board oversees the activities of SCAR in the U.S. Special attention has been directed at publication formats for the symposium, to expedite the open and wide sharing of mature and preliminary research results presented in talks and posters at the Tenth ISAES. All symposium presentations are documented by a short Summary printed in the Symposium Program Booklet and either a short research paper or an extended abstract. The research papers and extended abstracts are compiled in this Online Proceedings and are replicated on a DVD-ROM that is placed in the back of the Tenth ISAES Proceedings Book. The Proceedings Book has printed versions of the keynote talks and an overview paper of the symposium. The short research papers and extended abstracts have been handled differently. Research papers present mature research results and syntheses. They have been peer-reviewed using standard journal procedures. Following revisions and acceptances by co-editors, the papers have been formatted for publication and proofread by authors. Each paper has been assigned a Digital Object Identification (DOI) number and separate html link, and posted online (as part of this USGS Open-File Report series) to ensure open and wide access to the research results. Extended abstracts focus on preliminary research results and have not been peer reviewed. They have had only minimal editorial review and revision. Authors have formatted and proofread their papers. Extended abstracts were not given DOI numbers and are included together in a separate chapter of this online Proceedings. USGS publications staff and Stanford-student editorial assistants indexed and compiled the PDF versions of the short research papers and extended abstracts for inclusion in this online Proceedings. USGS staff created the master DVD-ROM that contains a replica of the Online Proceedings for the Tenth ISAES, and provided the DVD-ROM copies that are included in the Tenth ISAES Proceedings Book published by The National Academies Press in the U.S. A team of more than 25 co-editors coordinated with the numerous authors and peer reviewers in handling the many research papers and extended abstracts that are included herein. Handling the large volume of short papers and extended abstracts, getting most of them onli

Open-File Report

Simulated flow of groundwater and brine from a flooded salt mine in Livingston County, New York, and effects of remedial pumping on an overlying aquifer

Two ceiling collapses in the Retsof salt mine near Geneseo in upstate New York in spring 1994 resulted in the upward propagation of two columns of rubble through 600 feet of overlying shale and carbonate bedrock. This upward propagation formed a hydraulic connection between the lower confined aquifer (LCA) and the mine and allowed water from the aquifer and bedrock fracture zones that intersected the rubble columns to flow into the mine at a rate of 18,000 gallons per minute (gal/min) . All salt mining ceased in September 1995, and the mine was completely flooded by January 1996. The flow of water from the lower confined aquifer into the mine caused widespread drawdowns, and water levels in the aquifer declined by as much as 400 feet near the collapse area and by more than 50 feet at wells 7 miles to the north and south. Within 3 to 4 weeks of the collapses, water levels in about a dozen domestic and industrial wells had declined severely, and some wells went dry. Water levels in at least 58 wells in the lower and middle confined aquifers were affected by mine flooding. Groundwater in the upper unconfined aquifer and surface water in streams were unaffected by water-level drawdown, but channels of the Genesee River and Beards Creek were altered by land subsidence related to the mine collapse. Water levels recovered from 1996 through 2006, but the mine is now filled with about 15 billion gallons of saturated halite brine. The weight of the overlying rock and sediment is expected to cause the salt beds to deform and fill the mine cavity during the next several hundred years; this in turn could displace as much as 80 percent of the brine and cause it to move upward through the rubble chimneys, rendering the LCA unusable as a source of water supply. Saline water was detected in the LCA in 2002 but was found to be derived primarily from fractures in the limestone and shale units between the mine and the LCA, rather than from the mine. In September 2006, the mine company began a brine-mitigation project that entailed pumping five wells finished in limestone and shale units within the collapse areas to alter the flow gradient and thereby prevent further movement of brine and saline water into the LCA. The pumped brine was routed to an onsite desalination plant. At the same time, the U.S. Geological Survey (USGS) began a study in cooperation with the New York State Office of the Attorney General to construct numerical models to analyze the groundwater chemistry and delineate the directions of flow. Specific objectives of the study were to: * Assess the sources of salinity within the collapse area and identify the factors that control the movement and mixing of freshwater, saline waters from fracture zones, and brine; * Evaluate the likelihood that the pumping will induce anhydrite dissolution and lead to continued land subsidence; * Construct variable-density groundwater flow models to predict the effect of remedial pumping on salinity within the LCA; * Evaluate the effectiveness of remedial pumping in preventing the movement of saline water into the LCA; and * Predict the extent of brine migration 8 years after a hypothetical shutdown of all pumping in 2008. This report (1) summarizes the hydrogeologic setting and effects of mine flooding, (2) describes the geochemical and variable-density model simulations and their principal results, (3) discusses the implications of (a) continued pumping and desalination to protect the LCA and (b) a full shutdown of pumping after 2008, and (4) suggests further research that could lead to refinement of model predictions. Additional information may be found in Yager and others (2001 and 2009). These reports can be accessed at http://pubs.usgs.gov/pp/pp1611/ and http://pubs.usgs.gov/pp/pp1767/, respectively. A summary of simulation results can be accessed at http://ny.water.usgs.gov/projects/Coram/seawat/seawat.html.

New York