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USGS2015

A model for evaluating stream temperature response to climate change in Wisconsin

Expected climatic changes in air temperature and precipitation patterns across the State of Wisconsin may alter future stream temperature and flow regimes. As a consequence of flow and temperature changes, the composition and distribution of fish species assemblages are expected to change. In an effort to gain a better understanding of how climatic changes may affect stream temperature, an approach was developed to predict and project daily summertime stream temperature under current and future climate conditions for 94,341 stream kilometers across Wisconsin. The approach uses a combination of static landscape characteristics and dynamic time-series climatic variables as input for an Artificial Neural Network (ANN) Model integrated with a Soil-Water-Balance (SWB) Model. Future climate scenarios are based on output from downscaled General Circulation Models (GCMs). The SWB model provided a means to estimate the temporal variability in groundwater recharge and provided a mechanism to evaluate the effect of changing air temperature and precipitation on groundwater recharge and soil moisture. The Integrated Soil-Water-Balance and Artificial Neural Network version 1 (SWB-ANNv1) Model was used to simulate daily summertime stream temperature under current (1990–2008) climate and explained 76 percent of the variation in the daily mean based on validation at 67 independent sites. Results were summarized as July mean water temperature, and individual stream segments were classified by thermal class (cold, cold transition, warm transition, and warm) for comparison of current (1990–2008) with future climate conditions. Integrating the SWB Model with the ANN Model provided a mechanism by which downscaled global or regional climate model results could be used to estimate the potential effects of climate change on future stream temperature on a daily time step. To address future climate scenarios, statistically downscaled air temperature and precipitation projections from 10 GCMs and 2 time periods were used with the SWB-ANNv1 Model to project future stream temperature. Projections of future stream temperatures at mid- (2046–65) and late- (2081–2100) 21st century showed the July mean water temperature increasing for all stream segments with about 80 percent of stream kilometers increasing by 1 to 2 degrees Celsius (°C) by mid-century and about 99 percent increasing by 1 to 3 °C by late-century. Projected changes in stream temperatures also affected changes in thermal classes with a loss in the total amount of cold-water, cold-transition, and warm-transition thermal habitat and a gain in warm-water and very warm thermal habitat for both mid- and late-21st century time periods. The greatest losses occurred for cold-water streams and the greatest gains for warm-water streams, with a contraction of cold-water streams in the Driftless Area of western and southern Wisconsin and an expansion of warm-water streams across northern Wisconsin. Results of this study suggest that such changes will affect the composition of fish assemblages, with a loss of suitable habitat for cold-water fishes and gain in suitable habitat for warm-water fishes. In the end, these projected changes in thermal habitat attributable to climate may result in a net loss of fisheries, because many warm-water species may be unable to colonize habitats formerly occupied by cold-water species because of other habitat limitations (e.g., stream size, gradient). Although projected stream temperatures may vary greatly, depending on the emissions scenario and models used, the results presented in this report represent one possibility. The relative change in stream temperature can provide useful information for planning for potential climate impacts to aquatic ecosystems. Model results can be used to help identify vulnerabilities of streams to climate change, guide stream surveys and thermal classifications, prioritize the allocation of scarce financial resources, identify approaches to climate adaptation to best protect and enhance resiliency in stream thermal habitat, and provide information to make quantitative assessments of statewide stream resources.

Wisconsin↗
USGS1969

A hematopoietic virus disease of rainbow trout and sockeye salmon

A previously undescribed virus disease epizootic of hatchery rainbow trout ( Salmo gairdneri ) in British Columbia, Canada is presented. In the same locality, a similar virus disease was experienced among hatchery sockeye salmon ( Oncorhynchus nerka ). Typical symptoms included flashing, fecal casts, hemorrhagic areas at the base of fins, and petechial hemorrhages on the visceral fat and membranes in the abdominal cavity. Histopathologic changes were typified by extensive degeneration and necrosis in the hematopoietic tissues of the kidney and spleen. A virus was isolated from both species of fish on tissue culture and the viruses showed cross-infectivity. Based upon the pathological changes in the hematopoietic tissue and the demonstration of a vital infection, a tentative descriptive name was designated Infectious Hematopoietic Necrosis. The isolated viruses were distinctly different from the infectious pancreatic necrosis or viral hemorrhagic septicemia viruses of trout, but did show similarities to the Oregon sockeye and Sacramento River chinook viruses. Positive identification awaits further tests. The significance of these observations is the reporting of a new viral disease of rainbow trout and the extension of the geographic range of sockeye salmon viruses.

Transactions of the American Fisheries Society↗
USGS2019

The future of barriers and trapping methods in the sea lamprey (Petromyzon marinus) control program in the Laurentian Great Lakes

A major duty of the Great Lakes Fishery Commission (GLFC), created in 1955, was the development a program of eradication or management of sea lamprey populations in the Great Lakes for the protection of the Great Lakes fishery. Beginning in the 1980s the GLFC shifted sea lamprey control to an integrated pest management model seeking to deploy control measures which target multiple life stages. Currently control efforts focus on limiting the area of infestation using barriers to migratory adults and eradication of larvae from streams using selective pesticides. Feedback on program effectiveness is obtained by trapping migratory adult lamprey at a series of index sites around the basin. The GLFC continues to support multiple research initiatives to develop additional control, improve current control measures, and further advance the sea lamprey control program. During the past six decades sea lamprey control in the Great Lakes has evolved as the research program has identified technological advances. Here we summarize the current state and recent advancements for two of the sea lamprey control program’s core elements, barriers and traps, highlight challenges to be addressed to continue the advancement of these program elements, and provide a series of research questions to spur interest within the research community. Further, because considerable information about these program elements is scattered among grey literature and technical reports, we summarize the history of barriers and traps in sea lamprey control in the included appendices to provide relevant program background to anyone interested in pursuing these research topics.

Great Lakes↗
USGS1993

Gamete ripening and hormonal correlates in three strains of lake trout

In our 2-year laboratory study of hatchery-reared adult lake trout Salvelinus namaycush of the Seneca Lake, Marquette (Lake Superior Lean), and Jenny Lake strains, we compared gamete ripening times and changes in plasma concentrations of seven hormones. If interstrain differences in these traits were found, such differences might help explain the apparent failure of stocked fish of these strains to develop large, naturally reproducing populations in the Great Lakes. The complex temporal changes in plasma hormone levels that occur during sexual maturation in lake trout have not been previously described. We detected little evidence of temporal isolation that would prevent interbreeding among the three strains. Strain had no effect on ovulation date (OD) in either year. Strain did not affect spermiation onset date (SOD) in year 1 but did in year 2, when the mean SOD of Jenny Lake males was earlier than that of Seneca Lake males but not different from that of Marquette males. Hormonal data were normalized around ODs for individual females and SODs for individual males. In females, estradiol-17β (E2) was highest 8 weeks before the OD; the highest testosterone (T) level occurred 6 weeks before the OD, and the next highest level occurred simultaneously with the highest level of 11-ketotestosterone (11-KT) 2 weeks before the OD. Plasma levels of 17∝-hydroxy-20β-dihydroprogesterone (DHP) peaked 1 week before the OD, then abruptly declined immediately after. Cortisol (F), triiodothyronine (T 3 ), and thyroxine (T 4 ) were highly variable, but F was the only hormone that showed no trend with week in either year. In males, plasma E2 levels were highest 3 weeks before the SOD, highest levels of T and of 11-KT occurred simultaneously 2 weeks after the SOD, and DHP peaked 5 weeks after the SOD and 3 weeks after the highest levels of T and 11-KT. As in females, plasma levels of F, T 3 , and T 4 were highly variable, and F was the only hormone that showed no trend with week in either year. Strain had no effect on any hormones in females and only on T and F in males. The lack of pronounced interstrain differences in gamete ripening dates and reproductive endocrinology and the similarity of the temporal patterns and relative concentrations of hormones to those reported for other salmonids suggest nothing unusual or dysfunctional about these reproductive traits that would impede lake trout rehabilitation in the Great Lakes.

Transactions of the American Fisheries Society↗
USGS2018

Faunal and vegetation monitoring in response to harbor dredging in the Port of Miami

Seagrasses are highly productive ecosystems. A before-after-control-impact (BACI) design was used to examine effects of dredging on seagrasses and the animals that inhabit them. The control site North Biscayne Bay and the affected site Port of Miami had seagrass densities decrease during both the before, Fish and Invertebrate Assessment Network 2006-2011, and after, Faunal Monitoring in Response to Harbor Dredging 2014-2016, studies. Turbidity levels increased at North Biscayne Bay and Port of Miami basins during the Faunal Monitoring in Response to Harbor Dredging study, especially in 2016. Animal populations decreased significantly in North Biscayne Bay and Port of Miami in the Faunal Monitoring in Response to Harbor Dredging study compared to the Fish and Invertebrate Assessment Network study. Predictive modeling shows that numbers of animal populations will likely continue to decrease if the negative trends in seagrass densities continue unabated. There could be effects on several fisheries vital to the south Florida economy. Additional research could determine if animal populations and seagrass densities have rebounded or continued to decrease.

Florida↗
USGS1973

Lake Michigan: Man's effects on native fish stocks and other biota

Man's activities have caused great changes in Lake Michigan in the past 120 years. Although changes in water chemistry and lower biota have been generally modest (except locally), those in native fish stocks have been vast. Exploitation, exotic fish species, and eutrophication and other forms of pollution all have played a role in bringing about the changes (mostly declines in abundance) in fish populations. Exploitation resulted in a noticeable reduction in abundance of certain native species (especially whitefish) soon after the establishment of the commercial fishery in the 1840's. By the 1930's the sturgeon and the two largest deepwater ciscoes (Coregonus nigripinnis and C. johannae) became severely depleted. Other species- whitefish (Coregonus clupeaformis), lake trout (Salvelinus namaycush), and lake herring (C. artedii)- remained important commercially, but at a lower level of production than originally; greatly increased fishing effort and efficiency were required to maintain even these decreased catches. The catch of intermediate-size ciscoes held relatively stable, but again only through sharply increased fishing effort and efficiency. The earliest serious effects of exotic fish species on native fish stocks may have been during the 1930's, when smelt (Osmerus mordax), first became abundant. Powerful influences by exotics were not obvious, however, until the 1940's, when the sea lamprey's (Petromyzon marinus) predation on several species, particularly the lake trout, became critical. In the 1950's the sea lamprey was joined by the alewife (Alosa pseudoharengus), another exotic strongly deleterious to several native fish. The alewife apparently inhibited reproduction of deepwater ciscoes, yellow perch (Perca flavescens), deepwater sculpins (Myoxocephalus quadricornis), emerald shiners (Notropis atherinoides), and perhaps others (through competing with young, or feeding on them). At the same time, however, the alewife as a prolific forage fish has made possible the highly successful introduction of several species of salmonines. The effects of accelerated eutrophication and other pollution, although not always as easy to identify as the influences of other factors, were nevertheless clearly important as early as the mid-1800's. The first conspicuous contamination of Lake Michigan was by sawmill wastes, which covered spawning grounds in streams and around stream mouths. This type of pollution was particularly destructive to whitefish. Other forms of stream degradation (e.g., dams, deforestation of watersheds) although not strictly "pollution," must also have been detrimental to stream spawners. Heavy pollution in southern Green Bay (a large area of the bottom of which is now covered with anoxic gray sludge) probably has resulted in reduction in abundance of several species, e.g., lake herring and walleye (Stizostedion v. vitreum). Exploitation was largely responsible for the changes in Lake Michigan fish stocks before the invasion of the smelt, and probably before the invasion of the sea lamprey. The lamprey and alewife, however, have exerted a greater impact than the fishery on native fish populations in recent decades. Accelerated eutrophication and other pollution, although important, have not equalled the other factors in causing changes in native fish populations.

Technical Report↗
USGS1998

Ecology of Siberian Taimen Hucho taimen in the Lake Baikal Basin

Taimen Hucho taimen historically inhabited most tributaries and littoral areas of Lake Baikal, in south central Siberia, where they supported subsistence and commercial fisheries. Logging, pollution, and overfishing have caused dramatic population declines or local extinction of most stocks. Most of what is known about this species has been published in eastern journals and therefore is not readily available to western scientists. New data collected during the 1980s and 1990s have been combined with other reports to provide an overview of the biology and life history of this species. Taimen are long-lived fish and can reach ages of 29 years and sizes up to 60 kg. Populations can either be strictly riverine or anadromous. Adults from both life histories ascend rivers in spring to spawn and feed, and less extensive migrations occur in fall to prey on spawning omul ( Coregonus autumnalis migratorius ). Principal food items for age 1 and 2 taimen are macroinvertebrates, but young taimen quickly become piscivorous at age 2 when they consume mainly black Baikal grayling ( Thymallus arcticus baicalensis ), and sculpins ( Taracottus kneri, Cottus kesslerij ). Males reach sexual maturity at ages 7 to 8 and later for females at ages 8 to 9. Average egg production per female was about 22,000 eggs. Parasite burdens are heavy but composed of few species and mediated by prey items consumed. This fish is a highly-specialized predator and plays an indispensable role in the structure of fish communities in mountains and foothills. Taimen conservation in the Baikal region is impossible without adoption and implementation of a dedicated rehabilitation program that includes the protection of remaining populations and habitat, and possibly introduction of hatchery-reared fish in selected areas where habitat remains, but parental stocks are low.

Journal of Great Lakes Research↗
USGS2018

Assessing the impact of open-ocean and back-barrier shoreline change on Dauphin Island, Alabama, at multiple time scales over the last 75 years

Dauphin Island and Little Dauphin Island, collectively, make up a geomorphically complex barrier island system located along Alabama’s southern coast, separating Mississippi Sound from the Gulf of Mexico and Mobile Bay. The barrier island system provides numerous economical (tourism, fisheries) and natural (habitat for migratory birds, natural protection of inland and coastal areas from storms) benefits to the State of Alabama. The complex geomorphology of Dauphin Island is partly a response to temporal variations in the direction and magnitude of sediment transport along and across the barrier island system. In this report, we present open-ocean and back-barrier shoreline change rates at different time scales to evaluate the island’s dominant behavior (expansion or widening and contraction or narrowing) over the last 75 years. The spatial and temporal variability of barrier island width provides baseline and historical context for potential restoration alternatives being considered as part of the Alabama Barrier Island Restoration Feasibility Study. Open-ocean shorelines have eroded continuously over the last 75 years, with rates ranging from 1.5 to 4 meters per year. Back-barrier shorelines are less uniform than open-ocean shorelines, but are, on average, also eroding over the same period. Periods of back-barrier progradation are observed but generally occur during discrete, large altering events like hurricanes that overwash or breach narrow sections of the barrier island. Because both shorelines are eroding, the width of the island has decreased during the last 75 years. The section to the west of a breach that opened during Hurricanes Ivan and Katrina (known as Katrina Cut) exhibits a steady, rapid decrease in width while the section to the east of the breach has gone through periods of expansion and contraction and has only recently begun slowly narrowing. Although the recent trends indicate declining widths, the back-barrier progradation rates in this area were the highest compared to other time periods, which abated extreme narrowing caused by increased open-ocean shoreline erosion. These data and the interpreted results indicate that both short-term (annual) and long-term (decadal) cross-barrier sediment exchange is a key component of sustaining barrier island width. Therefore, any mechanisms that influence this exchange, whether from natural processes (overwash, breaching, or inlet dynamics) or human activities (development, post-storm recovery, restoration), should be considered when evaluating the long-term sustainability of barrier island systems.

Alabama↗
USGS2005

Aquatic invasive species

Invasive species are plants or animals that are present in an ecosystem beyond their native range. They may have few natural controls in their new environment and proliferate. They can threaten native species and interfere with human activities. The Western Fisheries Research Center (WFRC) has been conducting research to understand how non-native species invade and affect ecosystems, thus aiding management efforts.

Fact Sheet↗
USGS2013

An evaluation of liquid ammonia (ammonium hydroxide) as a candidate piscicide

Eradication of populations of nonnative aquatic species for the purpose of reintroducing native fish is often difficult because very few effective tools are available for removing aquatic organisms. This creates the need to evaluate new chemicals that could be used as management tools for native fish conservation. Ammonia is a natural product of fish metabolism and is naturally present in the environment at low levels, yet is known to be toxic to most aquatic species. Our objective was to determine the feasibility of using liquid ammonia as a fisheries management tool by evaluating its effectiveness at killing undesirable aquatic species and its persistence in a pond environment. A suite of invasive aquatic species commonly found in the southwestern USA were introduced into two experimental outdoor ponds located at the Rocky Mountain Research Station in Flagstaff, Arizona. Each pond was treated with ammonium hydroxide (29%) at 38 ppm. This target concentration was chosen because previous studies using anhydrous ammonia reported incomplete fish kills in ponds at concentrations less than 30 ppm. Water quality was monitored for 49 d to determine how quickly the natural bacteria in the environment converted the ammonia to nitrate. Ammonia levels remained above 8 ppm for 24 and 18 d, respectively, in ponds 1 and 2. Nitrite levels in each pond began to rise approximately 14 d after dosing with ammonia and stayed above 5 ppm for an additional 21 d in pond 1 and 18 d in pond 2. After 49 d all water in both ponds was drained and no fish, crayfish, or tadpoles were found to have survived the treatment, but aquatic turtles remained alive and appeared unaffected. Liquid ammonia appears to be an effective tool for removing many problematic invasive aquatic species and may warrant further investigation as a piscicide.

North American Journal of Fisheries Management↗
USGS2009

Depletion of isoeugenol residues from the fillet tissue of AQUI-S™ exposed rainbow trout ( Oncorhynchus mykiss )

There is a critical need in U.S. public aquaculture and fishery management for an approved sedative that allows for the immediate release of fish after sedation. AQUI-S TM is a fish anesthetic/sedative approved for use in several countries and until recently was being developed in the U.S. as a sedative for immediate release of fish after sedation. The U.S. National Toxicology Program reported that isoeugenol (the active ingredient in AQUI-S TM ) exposed male mice showed clear evidence of carcinogenicity, therefore efforts within the U.S. Department of Interior to develop AQUI-S TM as a sedative that allows for immediate release ceased. Despite the ruling, AQUI-S TM still has the potential to be approved as an anesthetic with a short withdrawal time. Among the data required to gain approval for use in the U.S. are data describing the composition and depletion of all AQUI-S TM residues from fish fillet tissue. A total residue depletion study for AQUI-S TM was conducted by exposing market-sized rainbow trout, Oncorhynchus mykiss (mean weight, 502.7 ± 54 g; s.d.) to 8.9 mg/L of 14 C-[URL]-isoeugenol for 60 min in 17 °C water. The 14 C-[URL]-isoeugenol was mixed with a surfactant resulting in a mixture that mimicked AQUI-S TM . Groups of fish ( n = 6) were sampled immediately after the exposure (0-h sample group) and at 0.5, 1, 2, and 4 h thereafter. Total isoeugenol-equivalent residue concentrations in the fillet tissue were determined by oxidizing triplicate subsamples of homogenized skin-on fillet tissue from each fish to 14 CO 2 and enumerating the radioactivity by static liquid scintillation counting. Isoeugenol concentrations in fillet tissue were determined by extracting homogenized fillet tissue with solvents and determining the isoeugenol concentrations in the extracts with high performance liquid chromatography techniques. The mean total isoeugenol-equivalent residue concentrations in the 0, 0.5, 1, 2, and 4-h sample groups were 55.4, 32.0, 19.8, 11.3, and 4.9 µg/g, respectively. The primary chemical residue in fillet tissue from all exposed fish was isoeugenol. The mean isoeugenol concentrations in the 0, 0.5, 1, 2, and 4-h sample groups were 48.9, 26.5, 15.3, 7.2, and 2.2 µg/g, respectively. The percents of the total radioactivity classified as isoeugenol in the 0, 0.5, 1, 2, and 4-h tissue extracts were 95, 73, 73, 64, and 48%, respectively.

Aquaculture↗
USGS1990

Influence of exchange flow between the channel and hyporheic zone on nitrate production in a small mountain stream

Variation in local exchange of flows between the channel and hyporheic zone produced temporally shifting concentration gradients of dissolved oxygen, nitrate, and ammonium in subsurface waters of a small, gravel-cobble bed stream. Channel water advected laterally supplied dissolved oxygen, and groundwater supplied ammonium to support hyporheic nitrification. Nitrate production was highest in sediment slurries from aerobic hyporheic sites, was absent at nearly anoxic sites, and was stopped by nitrification inhibitors (chlorate and nitrapyrin). Ammonium amendment to sediment slurries only slightly enhanced nitrate production indicating that sorption competed with biota for available substrate. Nitrate concentration increased from 75–130 μg N/L during 9 d of ammonium amendment to a hyporheic subsurface flow. Ammonium concentration rose slowly relative to a sulfate tracer initially, and declined slowly after cutoff as ammonium desorbed. Nitrate levels remained elevated for 6 d after cutoff as desorbed ammonium became biotically available. Interactions between the channel's hydrology, lithology, and biology such as we observed in nitrate production are probably more common than reported. However, the magnitude of the resulting nutrient flux will depend on factors which determine the depth and lateral extension of suitable hyporheic habitat.

California↗
USGS1998

Longevity of Lake Superior lake trout

The age structure of mature lake trout Salvelinus namaycush from the Wisconsin waters of Lake Superior increased following a population recovery that has taken place since the 1960s. As the population aged, it became apparent that scales were unreliable aging structures. Beginning in 1986, we examined both scale and sagittal otolith ages from tagged fish with a known period at liberty. We found large discrepancies in scale and sagittal otolith ages of mature fish, such that scale ages were biased low. We estimated lake trout living up to 42 years, which is greater than previously reported from Lake Superior. Investigators studying lake trout population dynamics in the Great Lakes should be aware that lake trout can live longer than previously thought.

North American Journal of Fisheries Management↗
USGS2008

Simulation of Flow Regimes to Reduce Habitat for T. tubifex

Whirling disease has had a significant impact on trout fisheries of the American west by reducing the numbers and quality of rainbow trout in infected streams. A critical factor in the life cycle of the whirling disease parasite is the fine sediment that provides the optimum habitat for Tubifex tubifex, an oligochaete worm that acts as an intermediate host for the disease. This report presents a model for the simulation of flushing flows required to remove undesirable fines and sand from a pool. Undesirable fines may also need to be flushed from runs, the surface layer, and backwater areas. Well-defined links of specific particle sizes to oligochaete worm abundance is needed to justify the use of flushing flows to move sediment. An analytical method for estimating the streamflows needed to remove the fine sediment is demonstrated herein. The overall steps to follow in removing fines from a stream are: Step 1. Determine size of the sediment that is the habitat for oligochaete worms. Step 2. Determine location of the sediment that is the habitat for oligochaete worms. Step 3. Determine streamflows needed to flush (remove) the sediment that is the habitat for oligochaete worms. The case study approach is used to present the method and to demonstrate its application. The case is derived from the sediment and oligochaete worm habitat of Willow Creek, a tributary of the Upper Colorado River located in Grand County, Colo. Willow Creek Reservoir (an element of the Colorado-Big Thompson Project) controls the streamflows of the creek and is just above the study site.

Open-File Report↗
USGS1983

Habitat Suitability Index Models: Mottled duck

The mottled duck is a mallard-like resident species of the Gulf of Mexico coast, from the marshes of Pearl River on the Lou i si ana-Ht ss t ss ipp i border to the Al varado Lagoon near Veracruz, Mexico (Bell rose 1976). The highest densities of nesting mottl ed ducks are found in brackish to fresh coastal marshes (H. Bateman, Louisiana Department of Wildl ife and Fisheries, Baton Rouge; pers , comm.). Mottled ducks also inhabit prairie land near prairie potholes in Texas and flooded rice fields in Texas (Engel ing 1950) and Louisiana (Linscombe 1972).

FWS/OBS↗
USGS2013

Behavior and movement of adult summer steelhead following collection and release, lower Cowlitz River, Washington, 2012--2013

Executive Summary Historically, adult summer steelhead Oncorhynchus mykiss returning to hatcheries on the lower Cowlitz River were sometimes transported and released in the river (recycled) to provide additional angling opportunity for the popular sport fishery in the basin. However, this practice has not been used in recent years because of concerns associated with interactions between hatchery fish and wild fish. Fishery managers were interested in resuming recycling but lacked information regarding effects of this practice on wild steelhead so we conducted a study during 2012–2013 to: (1) enumerate recycled steelhead that returned to the hatchery or were removed by anglers; and (2) determine if steelhead that were not removed from the river remained in the system where they could interact with wild fish. During June–August 2012, a total of 549 summer steelhead were captured at the Cowlitz Salmon Hatchery, tagged, and released downstream near the Interstate 5 Bridge. All recycled steelhead were tagged with a white Floy ® tag and opercle-punched; 109 (20 percent) of these fish also were radio-tagged. All adult steelhead that return to the hatchery were handled by hatchery staff so recycled steelhead that returned to the hatchery were enumerated daily. A creel survey and voluntary angler reports were used to determine the number of recycled steelhead that were caught by anglers. We established three fixed telemetry monitoring sites on the mainstem Cowlitz River and eight additional sites were deployed on tributaries to the lower Cowlitz River where wild winter steelhead are known to spawn. We also conducted mobile tracking from a boat during October 2012, November 2012, and January 2013 to locate radio-tagged fish. A total of 10,722 summer steelhead were captured at the Cowlitz Salmon Hatchery in 2012, which was the largest return since 2008. River flows during much of the study period were similar to 2008–2011 average flows, however, high-flow periods in July and November 2012 were nearly twice as high as the 2008–2011 average flows. We determined that 50 percent (273 fish) of the recycled steelhead returned to the hatchery and 18 percent (102 fish) of the recycled steelhead were caught by anglers. Most (243 fish; 89 percent) of the recycled steelhead that returned to the hatchery were recollected during July–August. The average elapsed time from release to recapture at the hatchery was 9 days (d) and 72 percent (182 fish) of the fish returned to the hatchery within 14 d of release. These trends were similar for recycled steelhead that were caught by anglers. Most fish were caught during July–August and the median time from release to capture was 10 d. We determined that 65 percent (70 fish) of the angler-caught fish returned to the hatchery within 14 d of release. River flows appeared to affect both hatchery returns and angler catch. The daily number of recycled steelhead that were recollected at the hatchery were low during periods when river flows were decreasing and high during periods when river flows were increasing. Conversely, daily angler catch of recycled steelhead generally was low when flows were increasing and high when flows were decreasing. We determined that 32 percent of the recycled steelhead (174 fish) were not removed from the lower Cowlitz River, based on observations from hatchery returns and angler reports, but results from the radio-tagged fish were insightful for understanding what may have happened to these fish. By comparison, we determined that 24 percent of the radio-tagged fish were not known to have been removed from the river. We determined that 12 percent of these fish were actively moving in the lower Cowlitz River during October 2012–January 2013. None of the radio-tagged fish were detected in tributaries during the study period except for a single fish that spent approximately 7 d in the Toutle River during early September. During October 2012–January 2013, 10 percent of the radio-tags from recycled steelhead were detected near popular fishing areas, and 2 percent of the radio-tagged steelhead were never detected during the study period. We suspect that a large proportion of these fish may have been harvested and not reported, or died. Detection patterns of radio-tagged steelhead showed that most fish (82 percent) moved upstream from the release site and were detected at the Trout Hatchery and the Barrier Dam sites. The median time from release to detection at these sites was 3.7 d and many of these fish made multiple trips between the two sites. Nearly one-third (29 percent) of the recycled steelhead that were detected at the Trout Hatchery and the Barrier Dam made at least two trips between the sites and some fish made as many as six trips. Radio-tagged fish that remained in the lower Cowlitz River during the spawning period (December 2012–January 2013) were observed in the river reach between the mouth of Ostrander Creek (river mile 10) and the Trout Hatchery (river mile 44). During this study, we collected data on opercle punch regrowth rates to understand the temporal effectiveness of this marking technique. We took opercle measurements for a total of 190 fish during the study. Fresh opercle punches were measured for 63 fish at the time of marking, and the remaining 127 fish were measured when fish returned to the hatchery. We determined that opercle punches remained open for about 30 d. The holes appeared to regrow slowly in the first 20 d after marking, but regrowth accelerated during the 20–30 d post-marking period. After 30 d, all opercle punches that we observed had completely closed due to tissue regrowth. Our study showed that a large proportion (68 percent) of the recycled steelhead were removed from the lower Cowlitz River. These fish primarily entered the hatchery or were caught by anglers within 14 d of release, which suggests that they present minimal risk to wild fish in the system. However, the remaining fish (32 percent) could not be accounted for, which may complicate fisheries management decisions associated with recycling summer steelhead. Findings from the radiotelemetry study suggest that unreported harvest or mortality could explain a large proportion of those fish that were not reported as having been removed from the river. Furthermore, intensive monitoring of the key spawning tributaries failed to detect a single fish during the spawning period. These findings were supported by observations from weir traps operated by the Washington Department of Fish and Wildlife. Our findings indicate that additional research may be warranted to further examine the effects of recycling hatchery summer steelhead in the lower Cowlitz River.

Washington↗
USGS2015

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2014

In 2014, the USGS LEBS successfully completed large vessel surveys in all three of Lake Erie’s basins. Lake Erie Biological Station’s primary vessel surveys included the Western Basin Forage Fish Assessment and East Harbor Forage Fish Assessment as well as contributing to the cooperative multi-agency Central Basin Hydroacoustics Assessment, the Eastern Basin Coldwater Community Assessment, and LTLA (see FTG, CWTG, and FTG reports, respectively). Results from the surveys contribute to Lake Erie Committee Task Group data needs and analyses of trends in Lake Erie’s fish communities. The cruise survey schedule in 2014 was greatly increased by LEBS’s participation in the Lake Erie CSMI, which consisted of up-to two weeks of additional sampling per month from April to October. CSMI is a bi-national effort that occurs at Lake Erie every five years with the purpose of addressing data and knowledge gaps necessary to management agencies and the Lake Erie LaMP. LEBS deepwater science capabilities also provided a platform for data collection by Lake Erie investigators from multiple agencies and universities including: the USGS GLSC, ODW, KSU, OSU, UM, PU, UT, and the USNRL. Samples from this survey are being processed and a separate report of the findings will be made available in a separate document. Our 2014 vessel operations were initiated in mid-April, as soon after ice-out as possible, and continued into early December. During this time, crews of the R/V Muskie and R/V Bowfin deployed 196 bottom trawls covering 48.5 km of lake-bottom, nearly 6 km of gillnet, collected data from 60 hydroacoustics transects, 285 lower trophic (i.e., zooplankton and benthos) samples, and 330 water quality measures (e.g., temperature profiles, water samples). Thus, 2014 was an intensive year of field activity. Our June and September bottom trawl surveys in the Western Basin were numerically dominated by Emerald Shiner, White Perch, and Yellow Perch; however, Freshwater Drum were dominant by biomass. Age-2+ Yellow Perch and White Perch diets from our western basin trawl had highest occurrences of benthic invertebrates in spring and fall. Hexagenia spp. accounted for >25% of Yellow Perch and White Perch diet composition (dry weight) in spring. We conducted an analysis using data from the past 6 years of our East Harbor survey to determine to what degree our new research vessel and trawl is affecting our ability to detect trends across the 50+ year time series. We also evaluated trends in water temperatue, dissolved oxygen, secchi depth and total Phosphorus from our LTLA sites near Vermilion, Ohio. Within the following report sections, we describe specific results from our primary surveys conducted in 2014.

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USGS2025

Wind River subbasin restoration: Annual report of U.S. Geological Survey activities January 2023 through December 2023

We sampled juvenile wild Oncorhynchus mykiss (Steelhead Trout) in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an inadequate adult ladder and contributed to increased water temperatures. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to the Columbia Basin Fish and Wildlife Program (2008) Research, Monitoring, and Evaluation (RM&E) Strategy of Fish Population Status Monitoring. Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2023, we PIT-tagged 1,294 Steelhead Trout parr (age-0 and age-1), in the Trout Creek and upper Wind River watersheds. Age-0 parr were at high abundance due to a strong spawning run in 2023 (estimate of 814 adults from September snorkel survey compared to 22-year median of 450; Charlie Cochran, WDFW Fish Biologist, personal commun., 2022), but age-1 parr abundance was low following poor spawner numbers in 2022 (estimate of 159 adults from September snorkel survey). An additional 189 age-2 or older parr were tagged to provide fish for estimating detection efficiencies at PTISs. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trapping, instream PTISs and Columbia River PIT-tag detection. We maintained and upgraded six instream PTISs to detect PIT-tagged Steelhead Trout parr, smolts, and adults, providing data for population assessments, and life-cycle research. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during seven of the past nine years and have exceeded 97% at our primary PTIS in the Wind River during eight of the past nine years. Adult escapement estimates to tributary watersheds are helping evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek, where it had potential negative effects on Steelhead Trout populations due to hydrologic impairment, increased temperatures, and adult passage issues because of an inadequate fish ladder. Detections at the instream PTISs have shown trends of age-0 and age-1 Steelhead Trout parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Our data suggest that often most fish from a cohort that migrate downstream will do so at age-1 for additional rearing downstream of their natal areas. It is unknown if this is ingrained behavior or a result of lack of habitat capacity. We have estimated that from 15 to 56% of parr tagged as age-0 fish in headwater areas make downstream migrations at age-1 for additional rearing. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall: this is especially pronounced in the upper Wind River portion of the watershed. These findings raise questions about preferred parr rearing habitat and whether migrations are density- or habitat-quality driven, and answers to such questions are part of the long-term goals of this study as active and passive habitat restoration actions occur. Repeat sampling at sites in the subbasin within and between years has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer have been similar across the subbasin, though slightly lower in the Trout Creek watershed. Summer growth rates have been lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. Non-native Salvelinus fontinalis (Brook Trout) are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling provides an index of their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 – 2003 to the period 2011 – 2024. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2022, though variable, have generally declined. Evaluation and planning of habitat restoration efforts are critical to ensure efficient use of money and resources. Assessing Steelhead Trout life history variation in the Wind River subbasin informs research and tracking of many populations and habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT-tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Detailed viable salmonid population and life-history data, such as that provided by PIT-tagging and instream PTIS networks inform fisheries policy and management and enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek and proposed major instream habitat restoration in the upper Wind River.

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