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USGS2022

Species distributions and the recognition of risk in restoration planning: A case study of salmonid fishes

One of the risks faced by habitat restoration practitioners is whether habitats included in restoration planning will be used by the target species or, conversely, whether habitats excluded from restoration planning would have benefited the target species. With the goal of providing a quantitative decision-making approach that represented varying levels of risk tolerance, we used multiple probability decision thresholds (PDT) to predict the range of occurrence for three anadromous fishes ( Oncorhynchus spp.) in a watershed in southwestern Washington, USA. For each species, we compared the predicted range of occurrence to the distribution used for restoration planning and quantified the amount of habitat blocked by anthropogenic barriers. Coho salmon ( O. kisutch ) had the broadest predicted range of occurrence (3061.6–6357.9 km; 0.75–0.25 PDT), followed by steelhead trout ( O. mykiss ; 1828.8–2836.8 km) and chum salmon ( O. keta ; 1373.9–1629.1 km). For each species, the predicted range of occurrence was similar or greater than the distribution used for restoration planning, suggesting that the current plan may exclude habitats that would benefit each species. Coho salmon had the greatest percentage of habitat blocked by anthropogenic barriers, followed by steelhead trout and chum salmon, respectively. Modeling species distributions at multiple risk-tolerance scenarios acknowledges uncertainty in restoration planning and allows practitioners to weigh the ecological benefits and budgetary constraints when considering locations for restoration. To effectively communicate restoration science to support practitioners in decision-making, we developed an R Shiny application online user interface available at: https://shiny.wdfw-fish.us/ChehalisRiverBasinSalmonidRangeOfOccurence/ .

Washington↗

USGS2015

Guidelines for evaluating performance of oyster habitat restoration

Restoration of degraded ecosystems is an important societal goal, yet inadequate monitoring and the absence of clear performance metrics are common criticisms of many habitat restoration projects. Funding limitations can prevent adequate monitoring, but we suggest that the lack of accepted metrics to address the diversity of restoration objectives also presents a serious challenge to the monitoring of restoration projects. A working group with experience in designing and monitoring oyster reef projects was used to develop standardized monitoring metrics, units, and performance criteria that would allow for comparison among restoration sites and projects of various construction types. A set of four universal metrics (reef areal dimensions, reef height, oyster density, and oyster size–frequency distribution) and a set of three universal environmental variables (water temperature, salinity, and dissolved oxygen) are recommended to be monitored for all oyster habitat restoration projects regardless of their goal(s). In addition, restoration goal-based metrics specific to four commonly cited ecosystem service-based restoration goals are recommended, along with an optional set of seven supplemental ancillary metrics that could provide information useful to the interpretation of prerestoration and postrestoration monitoring data. Widespread adoption of a common set of metrics with standardized techniques and units to assess well-defined goals not only allows practitioners to gauge the performance of their own projects but also allows for comparison among projects, which is both essential to the advancement of the field of oyster restoration and can provide new knowledge about the structure and ecological function of oyster reef ecosystems.

Restoration Ecology↗

USGS2005

Geological, hydrological, and biological issues related to the proposed development of a park at the confluence of the Los Angeles River and the Arroyo Seco, Los Angeles County, California

A new park is being considered for the confluence of the Los Angeles River and the Arroyo Seco in Los Angeles County, California. Components of the park development may include creation of a temporary lake on the Los Angeles River, removal of channel lining along part of the Arroyo Seco, restoration of native plants, creation of walking paths, and building of facilities such as a boat ramp and a visitor center. This report, prepared in cooperation with the Mountains Recreation and Conservancy Authority, delineates the geological, hydrological, and biological issues that may have an impact on the park development or result from development at the confluence, and identifies a set a tasks to help address these science issues. Geologic issues of concern relate to surface faulting, earthquake ground motions, liquefaction, landsliding, and induced seismicity. Hydrologic issues of concern relate to the hydraulics and water quality of both surface water and ground water. Biological issues of concern include colonization-extinction dynamics, wildlife corridors, wildlife reintroduction, non-native species, ecotoxicology, and restoration of local habitat and ecology. Potential tasks include (1) basic data collection and follow-up monitoring, and (2) statistical and probabilistic analyses and simulation modeling of the seismic, hydraulic, and ecological processes that may have the greatest impact on the park. The science issues and associated tasks delineated for the proposed confluence park will also have transfer value for river restoration in other urban settings.

Scientific Investigations Report↗

USGS2014

Interagency partnership to assess and restore a degraded urban riverine wetland: Dyke Marsh Wildlife Preserve, Virginia

The narrow-leaved cattail wetland known as Dyke Marsh formally became a land holding of George Washington Memorial Parkway (GWMP, a unit of the national park system) in 1959, along with a congressional directive to honor a newly-let 30-year commercial sand and gravel dredge-mining lease at the site. Dredging continued until 1974 when Public Law 93-251 called for the National Park Service and the United States Army Corps of Engineers to “implement restoration of the historical and ecological values of Dyke Marsh.” By that time, about 83 acres of the marsh remained, and no congressional funding accompanied the passage of the law to effect any immediate conservation or restoration. Decades of dredge mining had severely altered the surface area of Dyke Marsh, the extent of its tidal creek system, and the shallow river bottom of the Potomac River abutting the marsh. Further, mining destabilized the marsh, causing persistent erosion, shoreline retreat, and tidal channel widening after mining ceased. Erosion has continued unchecked until the present; approximately 50 acres of the original marsh are now estimated to remain. The specific cause of persistent erosion had been unknown prior to this collaborative study but previously was assumed to be due to flooding by the Potomac River.

Virginia↗

USGS2017

Frogs on the beach: Ecology of California Red-legged Frogs ( Rana draytonii ) in coastal dune drainages

California Red-legged Frogs (Rana draytonii) are typically regarded as inhabitants of permanent ponds, marshes, and slow-moving streams, but their ecology in other habitats, such as drainages among coastal dunes, remains obscure. Because coastal dune ecosystems have been degraded by development, off-highway vehicle use, stabilization, and invasive species, these unique ecosystems are the focus of restoration efforts. To better understand the ecology of California Red-legged Frogs in coastal dune ecosystems and to avoid and minimize potential negative effects of dune restoration activities on these rare frogs, we studied their spatial ecology, habitat selection, and survival in coastal dune drainages at Point Reyes National Seashore, California, USA. All 22 radio-marked frogs remained in their home drainages throughout the spring and summer of 2015 and, with some notable exceptions, most remained close to water. Local convex hull home ranges of four out of five California Red-legged Frogs with > 20 observations in dunes were < 1,600 m2 . At the population level, frogs were 1.7 (95% credible interval, 1.2‒4.4) times more likely to select sites 1 m closer to water, and were 83 (2.0‒17,000) times more likely to select sites with 10% greater percentage cover of logs that served as refuges from environmental extremes and predators. On average, California Red-legged Frogs avoided the invasive plants Iceplant (Carpobrotus edulis) and European Beachgrass (Ammophila arenaria). Frogs were 0.68 (0.32‒0.89) and 0.55 (0.24‒0.75) times as likely to select areas that had 10% greater cover of these plants, respectively. Assuming constant risk of mortality, California Redlegged Frogs had an annual survival rate of 0.70 (0.27‒0.96) in coastal dune drainages. Our results indicate that coastal dune drainages provide a locally important habitat for California Red-legged Frogs. Restoration practices that maintain wetted drainages with logjams are likely to benefit California Red-legged Frogs.

Herpetological Conservation and Biology↗

USGS2007

Fish movement ecology in high gradient headwater streams: Its relevance to fish passage restoration through stream culvert barriers

Restoration of fish passage through culvert barriers has emerged as a major issue in the Pacific Northwest and nationwide, in part, because of their potential influence on fish movement. Movement is an essential mechanism by which mobile animals acquire the resources necessary for the successful completion of their life-cycles. In this report, we provide a brief review of some essential characteristics of animal movement and examples from a focal group of fishes in Washington State: salmon, trout, and char. We begin by outlining some basic characteristics of animal movement and then apply that foundation to the case of salmonid fishes. Next we consider the consequences of disrupting fish movement with human-constructed barriers, such as culverts. Finally, this body of evidence is summarized, and we propose a short list of what we view as high priority information needs to support more effective restoration of fish passage through culverts.

Open-File Report↗

USGS2017

U.S. Geological Survey Science—Improving the value of the Chesapeake Bay watershed

Introduction Congress directed the Federal Government to work with States to restore the Nation’s largest estuary. Chesapeake Bay restoration provides important economic and ecological benefits: 18 million people live and work in the Bay watershed and enjoy its benefits. 3,600 types of fish, wildlife, and plants underpin the economic value of the Bay ecosystem. Poor water quality and habitat loss threaten restoration and negatively impact the economy. 10 Goals to meet by 2025 through the Chesapeake Bay Program, a voluntary partnership.

Delaware, Maryland, New York, Pennsylvania, Virgin↗

USGS1999

Wetland restoration, flood pulsing, and disturbance dynamics

While it is generally accepted that flood pulsing and disturbance dynamics are critical to wetland viability, there is as yet no consensus among those responsible for wetland restoration about how best to plan for those phenomena or even whether it is really necessary to do so at all. In this groundbreaking book, Dr. Beth Middleton draws upon the latest research from around the world to build a strong case for making flood pulsing and disturbance dynamics integral to the wetland restoration planning process. While the initial chapters of the book are devoted to laying the conceptual foundations, most of the coverage is concerned with demonstrating the practical implications for wetland restoration and management of the latest ecological theory and research. It includes a fascinating case history section in which Dr. Middleton explores the restoration models used in five major North American, European, Australian, African, and Asian wetland projects, and analyzes their relative success from the perspective of flood pulsing and disturbance dynamics planning. Wetland Restoration also features a wealth of practical information useful to all those involved in wetland restoration and management, including: * A compendium of water level tolerances, seed germination, seedling recruitment, adult survival rates, and other key traits of wetland plant species * A bibliography of 1,200 articles and monographs covering all aspects of wetland restoration * A comprehensive directory of wetland restoration ftp sites worldwide * An extensive glossary of essential terms

Book↗

USGS2019

Physical controls on salmon redd site selection in restored reaches of a regulated, gravel-bed river

Large‐scale river restoration programs have emerged recently as a tool for improving spawning habitat for native salmonids in highly altered river ecosystems. Few studies have quantified the extent to which restored habitat is utilized by salmonids, which habitat features influence redd site selection, or the persistence of restored habitat over time. We investigated fall‐run Chinook salmon spawning site utilization and measured and modeled corresponding habitat characteristics in two restored reaches: a reach of channel and floodplain enhancement completed in 2013 and a reconfigured channel and floodplain constructed in 2002. Redd surveys demonstrated that both restoration projects supported a high density of salmon redds, 3 and 14 years following restoration. Salmon redds were constructed in coarse gravel substrates located in areas of high sediment mobility, as determined by measurements of gravel friction angles and a grain entrainment model. Salmon redds were located near transitions between pool‐riffle bedforms in regions of high predicted hyporheic flows. Habitat quality (quantified as a function of stream hydraulics) and hyporheic flow were both strong predictors of redd occurrence, though the relative roles of these variables differed between sites. Our findings indicate that physical controls on redd site selection in restored channels were similar to those reported for natural channels elsewhere. Our results further highlight that in addition to traditional habitat criteria (e.g., water depth, velocity, and substrate size), quantifying sediment texture and mobility, as well as intragravel flow, provides a more complete understanding of the ecological benefits provided by river restoration projects.

Water Resources Research↗

USGS2022

Natural and anthropogenic factors influencing nesting ecology of the American crocodile in Florida, United States

Nesting ecology of American crocodiles ( Crocodylus acutus ) in Florida has been both positively and negatively influenced by anthropogenic and natural factors since the species was placed on the federally endangered species list in 1975. This includes a shift in nesting sites and an expansion of nesting to anthropogenic habitat. Using a 50-year record of monitoring data (1970-2020), we assessed factors influencing nesting ecology (number of nests, nest morphology, success rate, and habitat use) from a total of 3,013 nests recorded across South Florida. We detected a change in nesting success rate, increasing from 61% in the 1970’s to near 90% since 2010. Our hot spot analysis illustrates that nesting sites in northeastern Florida Bay and Flamingo/Cape Sable (Everglades National Park) were important for American crocodiles. Anthropogenic habitats, such as canals provided vital habitat nesting in areas such as Flamingo/Cape Sable (Everglades National Park), Turkey Point Power Plant, and Crocodile Lake National Wildlife Refuge for the current Florida population. Environmental parameters suspected to affect nesting success have shown an increasing trend over the past 50 years and minimum temperature and rainfall, during the summer season, are correlated with increased nesting success and temporal variation across South Florida. The adaptive capacity that American crocodiles exhibited in Florida gave the species advantages to face changes in climate and landscape over the last 50 years, however, it does not imply that the adaptive capacity of the species to face these changes (evolutionary potential) cannot reach a limit if changes continue. Here, we document C. acutus nesting ecology population responses to ecosystem restoration efforts in Florida; and further demonstrate the value of protecting and restoring habitat to support recovery of listed species.

Florida↗

USGS2008

Coastal Louisiana ecosystem assessment and restoration program: The role of ecosystem forecasting in evaluating restoration planning in the Mississippi River Deltaic Plain

The development of ecosystem management plans to restore and rehabilitate natural resources requires an understanding of how specific ecological mechanisms regulate the structure and function of ecosystems. To achieve restoration goals, comprehensive plans and engineering designs must effectively change environmental drivers at the regional level to reduce stress conditions at the local environment that are responsible for ecosystem degradation. This document focuses on the Coastal Louisiana Ecosystem Assessment and Restoration (CLEAR) ecosystem forecasting framework and how it can be used to support the analysis of Louisiana’s coastal restoration plans. Specifically, the framework is designed to (1) develop and incorporate conceptual ecological models that can be used to integrate ecological needs and opportunities with engineering designs, (2) utilize wetland loss rates to describe the most likely “future without” scenario for a variety of ecosystem attributes, (3) estimate broad ecosystem responses to restoration alternatives based on processes associated with succession of geomorphic and ecological systems, and (4) calculate ecological benefits for incorporation into decision support tools associated with large-scale geomorphic and hydrologic processes. This paper provides a brief overview of the spatial framework and modular design of the CLEAR ecosystem forecasting framework and describes in greater detail the evolution of the landscape change module, concepts for its refinement, and how it was utilized in evaluating a coastal restoration alternative proposed in the Coastal Protection and Restoration Authority Preliminary Draft Master Plan. Such projections by the CLEAR forecasting framework can evaluate processes and conditions that result in sustainable coastal ecosystems with habitat functions that support higher trophic levels.

Louisiana↗

USGS2021

A structured approach to remediation site assessment: Lessons from 15 years of fish spawning habitat creation in the St. Clair‐Detroit River system

Ideally, restoration re‐establishes natural processes in degraded habitats (e.g., flow and sediment regimes). However, in altered systems where process‐based restoration is not feasible, habitat construction is another approach to mitigate degradation. Because habitat construction does not directly focus on restoring processes that build and maintain desired habitats, projects must be developed and placed within the contemporary regulatory, ecological, and hydrogeomorphic context of a system, to maximize effectiveness. Here, we develop a framework for evaluating the regulatory, ecological, and hydrogeomorphic components using 15 years of fish spawning habitat construction in the St. Clair‐Detroit River System. The process began by identifying regulatory requirements at a coarse resolution to quickly focus on locations where ecological potential and hydrogeomorphic constraints could be assessed at finer resolutions. Next, ecological potential was assessed using a lithophilic fish spawning habitat suitability index. The suitability index identified five sites for habitat construction and Lake sturgeon spawning was documented at each site following construction. However, qualitative monitoring showed fine sediments accumulated at older sites. Thus, geomorphic assessments were incorporated to identify sediment sources and model flow within targeted areas. Since geomorphic assessments required the finest resolution and had the most uncertainty, they were conducted after broad‐scale regulatory considerations and ecological assessments narrowed focus to a few candidate sites. The order of operations identified in this case study evolved from the iterative approach of the restoration team, but in retrospect, it helped develop a framework that directed project development resources to aspects with more uncertainty, where learning is most critical.

Michigan, Ontario↗

USGS2022

Closing the gap on wicked urban stream restoration problems: A framework to integrate science and community values

Restoring the health of urban streams has many of the characteristics of a wicked problem. Addressing a wicked problem requires managers, academics, practitioners, and community members to make negotiated tradeoffs and compromises to satisfy the values and perspectives of diverse stakeholders involved in setting restoration project goals and objectives. We conducted a gap analysis on 11 urban stream restoration projects to identify disconnections, underperformance issues, and missing processes in the project structures used to develop restoration project goals and objectives. We examined the gap analysis results to investigate whether managers appropriately identified problem statements and met stated objectives. Projects that aimed to restore overall stream health commonly fell short for various reasons, including limited stakeholder and community input and buy-in, revealing potential limitations in the breadth of objectives, values, and stakeholder perspectives and knowledge types. Projects that emphasized integrating community values and diverse knowledge types tended to meet the expected outcomes of restoring stream processes through incremental solutions. Managers implementing more holistic solutions and values-driven approaches are more likely to consider diverse viewpoints from a variety of community local institutions. Based on these and other results, we propose a conceptual framework that integrates diverse perspectives and knowledge to enhance social and ecological outcomes of urban stream restoration. The framework also emphasizes the importance of setting objectives that support incremental solutions to foster more realistic expectations amongst stakeholders.

Freshwater Science↗

USGS2021

Summer Diet of Juvenile Lake Sturgeon Reintroduced into the Genesee and St. Regis Rivers, New York USA

The restoration of threatened species involves understanding multiple aspects of the life history and ecology of the target species. One important consideration in the restoration of threatened species is feeding ecology. We examined the summer diet of reintroduced juvenile lake sturgeon ( Acipenser fulvescens ) in the Genesee ( n = 119, ages 1 and 2) and the St. Regis rivers ( n = 40, ages 1, 2, 5, 6, and 7) of New York State, USA, in the summer of 2005. The most common taxa consumed were Diptera (88% of prey biomass) in the Genesee River and Ephemeroptera (35% of prey biomass) and Diptera (29%) in the St. Regis River. Diptera: (Chironomidae) was the major prey taxon in both benthic communities. Selectivity analysis showed a positive selection of Diptera by Genesee River lake sturgeon and an avoidance of Diptera by St. Regis River lake sturgeon. The St. Regis River lake sturgeon showed avoidance of Coleoptera, but positive selection of Ephemeroptera, Trichoptera, and Oligochaeta. Results indicate that the reintroduced juvenile lake sturgeon are growing and successfully finding prey in these two rivers and appear to actively select specific prey types.

New York↗

USGS2005

Rural land-use trends in the conterminous United States, 1950-2000

In order to understand the magnitude, direction, and geographic distribution of land-use changes, we evaluated land-use trends in U.S. counties during the latter half of the 20th century. Our paper synthesizes the dominant spatial and temporal trends in population, agriculture, and urbanized land uses, using a variety of data sources and an ecoregion classification as a frame of reference. A combination of increasing attractiveness of nonmetropolitan areas in the period 1970–2000, decreasing household size, and decreasing density of settlement has resulted in important trends in the patterns of developed land. By 2000, the area of low-density, exurban development beyond the urban fringe occupied nearly 15 times the area of higher density urbanized development. Efficiency gains, mechanization, and agglomeration of agricultural concerns has resulted in data that show cropland area to be stable throughout the Corn Belt and parts of the West between 1950 and 2000, but decreasing by about 22% east of the Mississippi River. We use a regional case study of the Mid-Atlantic and Southeastern regions to focus in more detail on the land-cover changes resulting from these dynamics. Dominating were land-cover changes associated with the timber practices in the forested plains ecoregions and urbanization in the piedmont ecoregions. Appalachian ecoregions show the slowest rates of land-cover change. The dominant trends of tremendous exurban growth, throughout the United States, and conversion and abandonment of agricultural lands, especially in the eastern United States, have important implications because they affect large areas of the country, the functioning of ecological systems, and the potential for restoration.

Ecological Applications↗

USGS2002

Quantifying vegetation and nekton response to tidal restoration of a New England salt marsh

Tidal flow to salt marshes throughout the northeastern United States is often restricted by roads, dikes, impoundments, and inadequately sized culverts or bridge openings, resulting in altered ecological structure and function. In this study we evaluated the response of vegetation and nekton (fishes and decapod crustaceans) to restoration of full tidal flow to a portion of the Sachuest Point salt marsh, Middletown, Rhode Island. A before, after, control, impact study design was used, including evaluations of the tide-restricted marsh, the same marsh after reintroduction of tidal flow (i.e., tide-restored marsh), and an unrestricted control marsh. Before tidal restoration vegetation of the 3.7-ha tide-restricted marsh was dominated by Phragmites australis and was significantly different from the adjacent 6.3-ha Spartina -dominated unrestricted control marsh (analysis of similarities randomization test, p < 0.001). After one growing season vegetation of the tide-restored marsh had changed from its pre-restoration condition (analysis of similarities randomization test, p < 0.005). Although not similar to the unrestricted control marsh, Spartina patens and S. alterniflora abundance increased and abundance and height of Phragmites significantly declined, suggesting a convergence toward typical New England salt marsh vegetation. Before restoration shallow water habitat (creeks and pools) of the unrestricted control marsh supported a greater density of nekton compared with the tide-restricted marsh (analysis of variance, p < 0.001), but after one season of restored tidal flow nekton density was equivalent. A similar trend was documented for nekton species richness. Nekton density and species richness from marsh surface samples were similar between the tide-restored marsh and unrestricted control marsh. Fundulus heteroclitus and Palaemonetes pugio were the numerically dominant fish and decapod species in all sampled habitats. This study provides an example of a quantitative approach for assessing the response of vegetation and nekton to tidal restoration.

Rhode Island↗

USGS2006

Use of cotton gin trash to enhance denitrification in restored forested wetlands

Lower Mississippi Valley (LMV) has lost about 80% bottomland hardwood forests, mainly to agriculture. This landscape scale alteration of the LMV resulted in the loss of nitrate (NO3) removal capacity of the valley, contributing to nitrogen (N)-enhanced eutrophication and potentially hypoxia in the northern Gulf of Mexico. Restoration of hardwood forests in the LMV is a highly recommended practice to reduce NO3 load of the Mississippi River. However, restored bottomland forests take decades to develop characteristic ecological functions including denitrifier activity. One way to enhance denitrifier activity in restored wetland forests is to amend the soils with an available carbon (C) source. This research investigated the effects of cotton gin trash (CGT) amendment on denitrification rate and N2O:N2 emission ratio from a restored bottomland forest soils and compared it to those from an adjacent unamended natural forest soils. CGT amendment increased denitrification rates in the restored forest soils to the level of the natural forest soils. N2O:N2 emission ratios from the restored and natural forest soils were highly variable and were not significantly different from each other. These findings suggest that restoration of bottomland hardwood forests in the LMV will require organic carbon amendment to achieve enhanced denitrifier activity for NO3 removal while the restored forest is developing into a mature state over time. ?? 2006 Elsevier B.V. All rights reserved.

Mississippi↗

USGS2014

Testing ecological tradeoffs of a new tool for removing fine sediment in a spring-fed stream

Excessive fine sediment is a focus of stream restoration work because it can impair the structure and function of streams, but few methods exist for removing sediment in spring-fed streams. We tested a novel method of sediment removal with the potential to have minimal adverse effects on the biological community during the restoration process. The Sand Wand system, a dredgeless vacuum developed by Streamside Technologies, was used to experimentally remove fine sediment from Kackley Springs, a spring creek in southeastern Idaho. We assessed the effects of the Sand Wand on stream physical habitat and macroinvertebrate composition for up to 60 days after the treatment. We documented changes in multiple habitat variables, including stream depth, median particle size, and the frequency of embedded substrate in stream reaches that were treated with the Sand Wand. We also found that macroinvertebrate composition was altered even though common macroinvertebrate metrics changed little after the treatment. Our results suggest that the Sand Wand was effective at removing fine sediments in Kackley Springs and did minimal harm to macroinvertebrate function, but the Sand Wand was not ultimately effective in improving substrate composition to desired conditions. Additional restoration techniques are still needed to decrease the amount of fine sediment.

Ecological Restoration↗