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At least 451 records · Page 25Linked to original sources

USGS1989

Side-scan sonar mapping of lake trout spawning habitat in northern Lake Michigan

Native stocks of lake trout Salvelinus namaycush were virtually or completely extirpated from the lower four Great Lakes by the early 1960s. The failure of early attempts to reestablish self-sustaining populations of lake trout was attributed partly to the practice of stocking hatcheryreared juveniles at locations and over substrates that had not been used in the past for spawning by native fish. Subsequent attempts to improve the selection of stocking locations were impeded by the lack of reliable information on the distribution of substrates on historical spawning grounds. Here we demonstrate the potential of side-scan sonar to substantially expand the data base needed to pinpoint the location of substrates where lake trout eggs, fry, or juveniles could be stocked to maximize survival and help ensure that survivors returning to spawn would encounter suitable substrates. We also describe the substrates and bathymetry of large areas on historical lake trout spawning grounds in the Fox Island Lake Trout Sanctuary in northern Lake Michigan. These areas could be used to support a contemporary self-sustaining lake trout population in the sanctuary and perhaps also in adjacent waters.

Great Lakes↗

USGS1998

Gill net saturation by lake trout in Michigan waters of Lake Superior

We conducted experimental fishing for lake trout Salvelinus namaycush in Michigan waters of Lake Superior to determine the importance of soak time on catch per effort (CPE) in numbers per kilometer of standard gill net. We modeled CPE as a nonlinear function of the number of nights between setting and lifting (soak time), in which the nets fill at a certain rate toward some maximum after which the nets cannot hold more fish. We found that lake trout CPE increased with soak time at a rate that varied with lake trout density toward a saturation level that was independent of lake trout density. The CPE values of nets soaked 2–5 nights divided by the CPE of nets soaked 1 night were significantly lower than would be expected had CPE increased as a linear function of the number of nights soaked. We derived a means for correcting gill-net CPE values for differing soak times to a common base of 1 night soaked. We concluded that it is inappropriate to assume lake trout catches in gill nets will increase in direct proportion to the number of nights soaked and recommend that CPE of lake trout in gill nets be corrected for soak time.

North American Journal of Fisheries Management↗

USGS2001

Fall and winter habitat use and movement by Columbia River redband trout in a small stream in Montana

We used radiotelemetry to quantify the movements and habitat use of resident adult Columbia River redband trout Oncorhynchus mykiss gairdneri (hereafter, redband trout) from October to December 1997 in South Fork Callahan Creek, a third‐order tributary to Callahan Creek in the Kootenai River drainage in northwestern Montana. All redband trout ( N = 23) were consistently relocated in a stream reach with moderate gradient (2.3%) near the site of original capture. Some fish ( N = 13) displayed sedentary behavior, whereas others were mobile ( N = 10). The mean total distance moved during the study for all fish combined was 64 m (SD = 105 m; range, 0–362 m), and the mean home range from October through December was 67 m (SD = 99 m; range, 5–377 m). Thirteen redband trout made short upstream and downstream movements (mean total movement = 134 m; range, 8–362 m) that were related to habitat use. Mobile fish commonly migrated to complex pools that spanned the entire channel width (primary pools). Eight of 10 fish that did not change habitat location occupied primary pools, whereas the remaining 2 fish occupied lateral pools. Fish commonly overwintered in primary pools dominated by cobble and boulder substrates that contained large woody debris. As water temperatures decreased from 3.2–6.3°C in October to 0–3.8°C in November and December, we found a 29% average increase (46–75%) in the proportional use of primary pool habitats. The lack of extensive movement and small home ranges indicate that adult redband trout found suitable overwintering habitat in deep pools with extensive amounts of cover within a third‐order mountain stream. Resource managers who wish to protect overwintering habitat features preferred by redband trout throughout their limited range in streams affected by land management practices could apply strategies that protect and enhance pool habitat and stream complexity.

Montana↗

USGS2001

Body conditions and stomach contents of subadult trout during fall and winter in three Wyoming tailwaters

We studied three tailwaters in Wyoming from October 1997 through February 1998 to determine whether body conditions of stocked, subadult rainbow trout Oncorhynchus mykiss or cutthroat trout O. clarki declined from fall through winter and to assess whether lack of food in stomachs might be related to any declines. Body conditions of rainbow trout in two tailwaters remained high through the winter. Body conditions of cutthroat trout in a third tailwater declined between October and February but not to levels anticipated to affect the overwinter survival of the fish. Trout with substantial amounts of food in their stomachs were found throughout the fall and winter in all three tailwaters. In no subadult trout in any of the three tailwaters did we observe rapid declines in body conditions during fall or continuous declines in body conditions to very low levels by the end of winter in association with low biomass of food in stomachs.

North American Journal of Fisheries Management↗

USGS2002

Spawning characteristics of redband trout in a headwater stream in Montana

I investigated the spawning characteristics of redband trout Oncorhynchus mykiss gairdneri (a rainbow trout subspecies) during the spring of 1998 in Basin Creek, a third-order headwater stream located in the Kootenai River drainage in northwestern Montana. I examined the timing of spawning as related to discharge and water temperature and analyzed microhabitat selection of 30 completed redds in a low-gradient (0.5–1.5%) reach. Redband trout spawned as flow declined after peak runoff and as mean daily water temperature exceeded 6.0C and maximum daily temperature exceeded 7.0C. Redband trout began spawning on 6 June (mean daily discharge = 2.1 m3/s), 10 d after the peak discharge (8.7 m3/s) occurred. The last redd was completed on 24 June, when discharge was 1.5 m3/s. The mean total redd length was 53 cm (SD = 14; range = 31–91 cm), and the mean total area was 51 cm2 (SD = 8; range= 46– 76 cm2). Eighty percent of the redds were located in pool tailouts, 13% in runs, and 7% in riffles. Spawning redband trout selected redd sites based on substrate size and water depth but not water velocity. Fish selected substrate sizes of 2–6 mm, water depths of 20–30 cm, and water velocities of 40–70 cm/s. My results suggest that redband trout in a low-gradient, third-order mountain stream found suitable spawning habitat in pool tail-outs that contained abundant gravels.

Montana↗

USGS2003

Historic and modern abundance of wild lean lake trout in Michigan waters of Lake Superior: Implications for restoration goals

Populations of lake trout Salvelinus namaycush in Lake Superior collapsed in the late 1950s due to overfishing and predation by sea lampreys Petromyzon marinus . A binational effort to restore the lean morphotype of lake trout began with the stocking of hatchery-reared fish followed by the chemical control of sea lampreys and closure of the commercial fishery. Previous comparisons of the contemporary abundance of wild lean lake trout with that from historic commercial fishery statistics indicate that abundance was higher historically. However, this conclusion may be biased because several factors—the inclusion of siscowet (the “fat” morphotype of lake trout) in the catch statistics, the soak time of nets, seasonal effects on catch per effort, and the confounding effects of effort targeted at lake whitefish Coregonus clupeaformis —were not accounted for. We developed new indices of historic lean lake trout abundance that correct for these biases and compared them with the assessment data from 1984 to 1998 in Michigan waters of Lake Superior. The modern (1984–1998) abundance of wild lean lake trout is at least as high as that during 1929–1943 in six of eight management areas but lower in one area. Measures to promote and protect naturally reproducing populations have been more successful than previously realized.

North American Journal of Fisheries Management↗

USGS2003

Effect of swimming activity on relative weight and body composition of juvenile rainbow trout

Fisheries managers often assess body condition using relative weight (Wr) because it provides a comparative measure of fish plumpness among individuals and populations. However, it is not known whether the morphological information that Wr summarizes reflects physiological measures, such as relative lipid reserves, in rainbow trout Oncorhynchus mykiss. The purpose of this study was to determine whether swimming activity affects either the Wr or proximate body composition of juvenile (total length, 170-260 mm) rainbow trout. When rainbow trout from a hatchery were fed ad libitum for 147 d, inactive (no current) and active (15 cm/s current velocity) fish did not differ in Wr However, inactive rainbow trout maintained relatively constant lipid levels, whereas active fish declined in lipid content. Relative weight may provide a comparable measure of body form, but it is not an accurate index of lipid content between active and inactive rainbow trout fed an excess ration. For assessing the physiological condition of rainbow trout, measurement of proximate body composition appears to be more accurate than indices based on length and weight.

North American Journal of Fisheries Management↗

USGS2004

Seasonal movement of brown trout in the Clinch River, Tennessee

We used radiotelemetry to monitor the seasonal movements of trophy-size brown trout Salmo trutta in the Clinch River below Norris Dam, Tennessee, to determine whether establishing a special-regulation reach to reduce fishing mortality was a viable management option. Fifteen brown trout (size range, 430-573 mm total length) collected from the river were implanted with radio transmitters between November 1997 and May 1998. Forty-seven percent of these fish died or expelled their transmitters within 50 d postsurgery. The range of movement for surviving brown trout was significantly larger in fall (geometric mean range = 5,111 m) than in any other season. Four brown trout that were monitored for more than 1 year exhibited a limited range of movement (<2 km) during the winter, spring, and summer, but they made extensive movements (>5 km) during the fall season, presumably to spawn. Brown trout also moved more during the fall than in any other season. Harvest restrictions applied to a specific reach of the Clinch River would reduce the exploitation of brown trout in that reach for most of the year but not during the fall, when many fish undertake extensive spawning migrations.

North American Journal of Fisheries Management↗

USGS2010

Influence of drought conditions on brown trout biomass and size structure in the Black Hills, South Dakota

We evaluated the influence of drought conditions on the biomass of brown trout Salmo trutta in Spearfish Creek, upper Rapid Creek, and lower Rapid Creek in the Black Hills of western South Dakota. Stream discharge, mean summer water temperature, the biomass of juvenile and adult brown trout, and brown trout size structure were compared between two time periods: early (2000–2002) and late drought (2005–2007). Mean summer water temperatures were similar between the early- and late-drought periods in Spearfish Creek (12.4°C versus 11.5°C), lower Rapid Creek (19.2°C versus 19.3°C), and upper Rapid Creek (9.8°C in both periods). In contrast, mean annual discharge differed significantly between the two time periods in Spearfish Creek (1.95 versus 1.50 m 3 /s), lower Rapid Creek (2.01 versus 0.94 m 3 /s), and upper Rapid Creek (1.41 versus 0.84 m 3 /s). The mean biomass of adult brown trout in all three stream sections was significantly higher in the early-drought than in the late-drought period (238 versus 69 kg/ha in Spearfish Creek, 272 versus 91 kg/ha in lower Rapid Creek, and 159 versus 32 kg/ha in upper Rapid Creek). The biomass of juvenile brown trout was similar (43 versus 23 kg/ha) in Spearfish Creek in the two periods, declined from 136 to 45 kg/ha in lower Rapid Creek, and increased from 14 to 73 kg/ha in upper Rapid Creek. Size structure did not differ between the early- and late-drought periods in lower Rapid and Spearfish creeks, but it did in upper Rapid Creek. In addition to drought conditions, factors such as angler harvest, fish movements, and the nuisance algal species Didymosphenia geminata are discussed as possible contributors to the observed changes in brown trout biomass and size structure in Black Hills streams.

South Dakota↗

USGS2019

Life cycle of the trout cecal nematode, Truttaedacnitis truttae (Nematoda: Cucullanidae): Experimental and field observations

Truttaedacnitis truttae is a cucullanid nematode of primarily salmonine fishes. Brown trout ( Salmo trutta ) in Europe reportedly become parasitized by ingesting lampreys ( Lampetra planeri ) carrying infective larvae. However, our field and laboratory observations suggested that North American specimens of T. truttae have an alternative life cycle. High abundances and potential impact of T. truttae in rainbow trout, Oncorhynchus mykiss , in the Colorado River drainage in Grand Canyon, where there are no lampreys, prompted a study on the transmission dynamics of this nematode. Eggs of T. truttae , collected from live gravid females, were incubated in the laboratory. Snails, Physa gyrina and Lymnaea sp., were exposed to T. truttae larvae 3–4 wk later. Active larvae of T. truttae were observed penetrating the intestinal wall of exposed snails, and worm larvae were found in the visceral tissues when examined 1 wk after exposure. Larvae in snails showed little growth and development 2 wk later and corresponded to L3 larvae. Infected snails were fed to hatchery-reared juvenile rainbow trout. Developing stages were subsequently found in the mucosal lining and lumen of trout intestines. Adult male and female (gravid) worms were found in the ceca of trout examined 5–6 mo after consuming infected snails. Larvae found in pepsin/trypsin digests and mucosal scrapings from wild, naturally infected, trout corroborate laboratory findings. Screening of Physa sp. and gammarids collected from Colorado River, Grand Canyon, for natural infections with T. truttae using the ITS1 rDNA marker gave positive results. Truttaedacnitis truttae is the second species, after Truttaedacnitis clitellarius of lake sturgeon, capable of using a snail first intermediate/paratenic host and is similar to several other cucullanids in having a histotropic phase of development in the definitive fish host.

Arizona↗

USGS2022

Comparative assessment of laboratory-derived thermal maxima of Gila trout (oncorhynchus Gilae) with current stream temperatures

Gila trout ( Oncorhynchus gilae ) represent an iconic species of the American Southwest. The salmonid has survived extensive logging, livestock grazing, and mining, and is currently threatened by climate change, wildfire, and extended drought. Long-term conservation and recovery of the species and its unique lineages rely on stocking and translocation into historically inhabited streams. Thus, the fish's thermal tolerance is essential in determining suitable habitat and potential vulnerability to a warming climate. We compared a laboratory-derived temperature metric, critical thermal maximum (CTMax), in hatchery-reared Gila trout from three lineages (Main Diamond, South Diamond, and Whiskey Creek) to determine if CTMax differed among the lineages. The average initial (28.9°C, SD = 0.81°C) and final (29.2°C, SD = 0.74°C) temperature at loss of righting responses did not differ across the lineages. We compared the CTMax values with stream temperatures across three drainages representative of extant Gila trout populations from spring 2015 to fall 2018. The East Fork Gila River drainage was represented by more extreme stream temperatures. The maximum daily maximum temperature (i.e., single highest temperature) varied from 24.1 to 33.4°C, exceeding CTMax in four of the five streams. The maximum daily temperature varied from 12.1 to 28.6°C, and the mean weekly maximum temperature varied from 19.9 to 31.1°C. Mean weekly maximum temperature in Lower Diamond Creek exceeded CTMax on 11 occasions. Stream temperatures were cooler within the Middle and the West Fork Gila River drainages and did not exceed CTMax. Intermittency loggers within the East Fork Gila River drainage, which supports Main Diamond and South Diamond lineages of Gila trout, recorded over 300 days of intermittency during a drought. Continued long-term monitoring of stream temperature and comparison with CTMax of Gila trout could assist with decisions of which streams in the Gila Drainage are suitable for Gila trout recovery, stocking, and translocation.

New Mexico↗

USGS2013

Water temperature and baseflow discharge of streams throughout the range of Rio Grande cutthroat trout in Colorado and New Mexico—2010 and 2011

This study characterized the thermal regime in a number of Colorado and New Mexico streams that contain populations of Rio Grande cutthroat trout (Oncorhynchus clarkii virginalis) and had no previous record of continual temperature records. When compared to Colorado’s water temperature criteria (Cold Tier 1), a portion of these populations appeared to be at risk from elevated stream temperatures, as indicated by exceedance of both acute (17–22 percent) and chronic (2–9 percent) water quality metrics. Summer water temperature profiles recorded at sites within current Rio Grande cutthroat trout habitat indicated that although the majority of currently occupied conservation streams have temperatures that fall well below these biologically based acute and chronic thermal thresholds, several sites may be at or approaching water temperatures considered stressful to cutthroat trout. Further, water temperatures should be considered in decisions regarding the current and future thermal suitability of potential Rio Grande cutthroat trout restoration sites. Additionally, baseflow discharge sampling indicated that a majority of the sampled stream segments containing Rio Grande cutthroat trout have flows less than 1.0 cubic feet per second (cfs) in both 2010 (74 percent) and 2011 (77 percent). The relative drought sensitivity of these low baseflow streams containing Rio Grande cutthroat trout could be further evaluated to assess their probable sustainability under possible future drought conditions.

Colorado;New Mexico;Texas↗

USGS2015

Identifying trout refuges in the Indian and Hudson Rivers in northern New York through airborne thermal infrared remote sensing

The locations and sizes of potential cold-water refuges for trout were examined in 2005 along a 27-kilometer segment of the Indian and Hudson Rivers in northern New York to evaluate the extent of refuges, the effects of routine flow releases from an impoundment, and how these refuges and releases might influence trout survival in reaches that otherwise would be thermally stressed. This river segment supports small populations of brook trout (Salvelinus fontinalis ), brown trout ( Salmo trutta ), and rainbow trout (Oncorhynchus mykiss ) and also receives regular releases of reservoir-surface waters to support rafting during the summer, when water temperatures in both the reservoir and the river frequently exceed thermal thresholds for trout survival. Airborne thermal infrared imaging was supplemented with continuous, in-stream temperature loggers to identify potential refuges that may be associated with tributary inflows or groundwater seeps and to define the extent to which the release flows decrease the size of existing refuges. In general, the release flows overwhelmed the refuge areas and greatly decreased the size and number of the areas. Mean water temperatures were unaffected by the releases, but small-scale heterogeneity was diminished. At a larger scale, water temperatures in the upper and lower segments of the reach were consistently warmer than in the middle segment, even during passage of release waters. The inability of remote thermal infrared images to consistently distinguish land from water (in shaded areas) and to detect groundwater seeps (away from the shallow edges of the stream) limited data analysis and the ability to identify potential thermal refuge areas.

New York↗

USGS2017

Spatial and temporal distribution of bull trout ( Salvelinus confluentus )-size fish near the floating surface collector in the North Fork Reservoir, Oregon, 2016

Acoustic cameras were used to assess the behavior and abundance of bull trout ( Salvelinus confluentus )-size fish at the entrance to the North Fork Reservoir juvenile fish floating surface collector (FSC). The purpose of the FSC is to collect downriver migrating juvenile salmonids at the North Fork Dam, and safely route them around the hydroelectric projects. The objective of the acoustic camera component of this study was to assess the behaviors of bull trout-size fish observed near the FSC, and to determine if the presence of bull trout-size fish influenced the collection or abundance of juvenile salmonids. Acoustic cameras were deployed near the surface and floor of the entrance to the FSC. The acoustic camera technology was an informative tool for assessing abundance and spatial and temporal behaviors of bull trout-size fish near the entrance of the FSC. Bull trout-size fish were regularly observed near the entrance, with greater abundances on the deep camera than on the shallow camera. Additionally, greater abundances were observed during the hours of sunlight than were observed during the night. Behavioral differences also were observed at the two depths, with surface fish traveling faster and straighter with more directed movement, and fish observed on the deep camera generally showing more milling behavior. Modeling potential predator-prey interactions and influences using collected passive integrated transponder (PIT) -tagged juvenile salmonids proved largely unpredictable, although these fish provided relevant timing and collection information. Overall, the results indicate that bull trout-size fish are present near the entrance of the FSC, concomitant with juvenile salmonids, and their abundances and behaviors indicate that they may be drawn to the entrance of the FSC because of the abundance of prey-sized fish.

Oregon↗

USGS2022

Evolutionary and ecological connectivity in westslope cutthroat trout (Oncorhynchus clarkii lewisi) and mountain whitefish (Prosopium williamsoni) in relation to the potential influences of Boundary Dam, Washington, Idaho, and parts of British Columbia

In this report, we consider evolutionary and ecological connectivity for westslope cutthroat trout ( Oncorhynchus clarkii lewisi ) and mountain whitefish ( Prosopium williamsoni ) within the Pend Oreille River in northeastern Washington State, northern Idaho, and adjacent portions of southeastern British Columbia, Canada. Specifically, we focused on the rationale for active translocation of individuals of these species upstream from Boundary Dam both in the context of natural patterns of pre-dam evolutionary connectivity as well as preserving contemporary ecological and evolutionary characteristics of local extant populations. Boundary Dam impounds the Pend Oreille River (called the Pend d’Oreille River in Canada) with the resulting reservoir inundating two historical barriers to upstream movement of fish (Metaline Falls and Z Canyon). Historically, it was thought these barriers impeded the upstream movement of westslope cutthroat trout and mountain whitefish, as well as Pacific salmon ( Oncorhynchus spp.), steelhead trout ( O. mykiss ), and other resident species such as bull trout ( Salvelinus confluentus ). To address connectivity, we consider historical and contemporary processes and features. This review includes an assessment of postglacial processes within the Pend Oreille River and systems upstream that include Priest Lake, Lake Pend Oreille, the Clark Fork River, features of Boundary Reservoir and its tributaries, and areas downstream in the Pend Oreille River such as the Salmo River. Based on this information, we then give a more detailed review of existing genetic and ecological data to summarize what is known about connectivity for westslope cutthroat trout and mountain whitefish. Our assessment of the collective evidence leads us to conclude that moving fish upstream over Boundary Dam is not warranted if the management objective is to maintain natural patterns of evolutionary and ecological connectivity or to conserve unique ecological and evolutionary characteristics of extant local populations of these species in the system. These findings parallel that of a previous analysis of bull trout. Although we were able to arrive at well-supported conclusions in relation to Boundary Dam, we suggest that more work on connectivity further upstream in the Pend Oreille River would help to better understand the role of historical processes and dams further up in the system.

British Columbia, Idaho, Washington↗

USGS2007

Streambed infiltration and ground-water flow from the Trout Creek drainage, an intermittent tributary to the Humboldt River, north-central Nevada

Ground water is abundant in many alluvial basins of the Basin and Range Physiographic Province of the western United States. Water enters these basins by infiltration along intermittent and ephemeral channels, which originate in the mountainous regions before crossing alluvial fans and piedmont alluvial plains. Water also enters the basins as subsurface ground-water flow directly from the mountains, where infiltrated precipitation recharges water-bearing rocks and sediments at these higher elevations. Trout Creek, a typical intermittent stream in the Middle Humboldt River Basin in north-central Nevada, was chosen to develop methods of estimating and characterizing streambed infiltration and ground-water recharge in mountainous terrains. Trout Creek has a drainage area of about 4.8 × 10 7 square meters. Stream gradients range from more than 1 × 10 –1 meter per meter in the mountains to 5 × 10 –3 meter per meter at the foot of the piedmont alluvial plain. Trout Creek is perennial in short reaches upstream of a northeast-southwest trending normal fault, where perennial springs discharge to the channel. Downstream from the fault, the water table drops below the base of the channel and the stream becomes intermittent. Snowmelt generates streamflow during March and April, when streamflow extends onto the piedmont alluvial plain for several weeks in most years. Rates of streambed infiltration become highest in the lowest reaches, at the foot of the piedmont alluvial plain. The marked increases in infiltration are attributed to increases in streambed permeability together with decreases in channel-bed armoring, the latter which increases the effective area of the channel. Large quartzite cobbles cover the streambed in the upper reaches of the stream and are absent in the lowest reach. Such changes in channel deposits are common where alluvial fans join piedmont alluvial plains. Poorly sorted coarse and fine sediments are deposited near the head of the fan, while finer-grained but better sorted gravels and sands are deposited near the foot. All flow in Trout Creek is lost to infiltration in the upper and middle reaches of the channel during years of normal to below-normal precipitation. During years of above-normal precipitation, streamflow extends beyond the piedmont alluvial plain to the lower reaches of the channel, where high rates of infiltration result in rapid stream loss. The frequency and duration of streambed infiltration is sufficient to maintain high water contents and low chloride concentrations, compared with interchannel areas, to depths of at least 6 m beneath the channel. Streamflow, streambed infiltration, and unsaturated-zone thickness are all highly variable along intermittent streams, resulting in recharge that is highly variable as well. Average annual ground-water recharge in the mountainous part of the Trout Creek drainage upstream of Marigold Mine was estimated on the basis of chloride balance to be 5.2 × 10 5 cubic meters. Combined with an average annual surface runoff exiting the mountains of 3.4 × 10 5 cubic meters, the total annual volume of inflow to alluvial-basin sediments from the mountainous part of the Trout Creek is 8.6 × 10 5 cubic meters, assuming that all runoff infiltrates the stream channel. This equates to about 7 percent of average annual precipitation, which is about the same percentage estimated for ground-water recharge using the original Maxey-Eakin method.

Nevada↗

USGS2006

Visualizing the geology of lake trout spawning sites: Northern Lake Michigan

Geologists and biologists are working together to understand the links between lake floor geology (composition and shape) and the distribution of lake trout throughout their life cycle. Lake floor geology is one of the main factors determining where lake trout spawn, feed, and hide. In support of ongoing research to study Lake Michigan trout habitats, the U.S. Geological Survey in cooperation with the U.S. Army Corps of Engineers mapped the morphology of principle lake trout spawning sites. Using the Army Corps of Engineer's SHOALS airborne lidar (Light Detection and Ranging) system we mapped six regions in Northern Lake Michigan in order to identify ideal spawning regions composed of shallow, clean, gravel/cobble substrate, adjacent to deeper water. Lidar mapping systems, which use laser pulses to measure water depths from an airplane, are now available to map the nearshore lake morphology at meter-scale detail. Maps generated from the bathymetric data are used to define regions with smooth homogeneous substrate, regions with higher relief, and mixed regions with both smooth and rough relief. This morphologic information combined with sediment samples and direct bottom observations enable geologists to map areas with rougher relief composed of rock outcrop, boulders, and cobbles, as well as smooth regions covered with sand or mud. This information helps biologists, fishery managers, and ecologists visualize the lake floor in significant detail which promotes better fishery management, species protection, and habitat identification. These maps present the maps and discuss the geology of the six lake trout spawning sites mapped by the lidar system. Where the mapping approached land, aerial photography of the land is combined with the bathymetric data to help visualize the scale of the offshore features. Map and perspective views of Boulder Reef, Hog Island Reef, and Little Traverse Bay are shown on sheet 1, whereas map and perspective views of Trout and High Island Shoal, Gull Island Reef, and Dahlia Shoal are shown on sheet 2. Additional information, bathymetric data, imagery, and metadata are available online at http://geopubs.wr.usgs.gov/open-file/of03-120/.

Michigan, Wisconsin↗

USGS2013

Emergence of MD type infectious hematopoietic necrosis virus in Washington State coastal steelhead trout

Infectious hematopoietic necrosis virus (IHNV) occurs in North America as 3 major phylogenetic groups designated U, M, and L. In coastal Washington State, IHNV has historically consisted of U genogroup viruses found predominantly in sockeye salmon Oncorhynchus nerka . M genogroup IHNV, which has host-specific virulence for rainbow and steelhead trout O. mykiss , was detected only once in coastal Washington prior to 2007, in an epidemic among juvenile steelhead trout in 1997. Beginning in 2007 and continuing through 2011, there were 8 IHNV epidemics in juvenile steelhead trout, involving 7 different fish culture facilities in 4 separate watersheds. During the same time period, IHNV was also detected in asymptomatic adult steelhead trout from 6 coastal watersheds. Genetic typing of 283 recent virus isolates from coastal Washington revealed that the great majority were in the M genogroup of IHNV and that there were 2 distinct waves of viral emergence between the years 2007 and 2011. IHNV type mG110M was dominant in coastal steelhead trout during 2007 to 2009, and type mG139M was dominant between 2010 and 2011. Phylogenetic analysis of viral isolates indicated that all coastal M genogroup viruses detected in 1997 and 2007 to 2011 were part of the MD subgroup and that several novel genetic variants related to the dominant types arose in the coastal sites. Comparison of spatial and temporal incidence of coastal MD viruses with that of the rest of the Pacific Northwest indicated that the likely source of the emergent viruses was Columbia River Basin steelhead trout.

Washington↗